Citrus Sinensis ID: 004164
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 771 | 2.2.26 [Sep-21-2011] | |||||||
| A5PK19 | 699 | Methyltransferase-like pr | yes | no | 0.818 | 0.902 | 0.328 | 3e-90 | |
| Q8N6R0 | 699 | Methyltransferase-like pr | yes | no | 0.813 | 0.896 | 0.329 | 4e-89 | |
| Q91YR5 | 698 | Methyltransferase-like pr | yes | no | 0.805 | 0.889 | 0.322 | 8e-88 | |
| A5WVX1 | 690 | Methyltransferase-like pr | yes | no | 0.845 | 0.944 | 0.303 | 1e-79 | |
| Q29LW1 | 673 | Methyltransferase-like pr | yes | no | 0.793 | 0.909 | 0.300 | 3e-67 | |
| Q9VIK9 | 673 | Methyltransferase-like pr | yes | no | 0.791 | 0.906 | 0.289 | 2e-65 | |
| Q6NTR1 | 693 | Methyltransferase-like pr | N/A | no | 0.479 | 0.533 | 0.316 | 2e-48 | |
| Q10711 | 883 | Endothelin-converting enz | no | no | 0.171 | 0.149 | 0.359 | 5e-15 | |
| O60344 | 883 | Endothelin-converting enz | no | no | 0.149 | 0.130 | 0.384 | 7e-15 | |
| Q80Z60 | 881 | Endothelin-converting enz | no | no | 0.166 | 0.145 | 0.366 | 2e-14 |
| >sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 333 bits (854), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 239/727 (32%), Positives = 357/727 (49%), Gaps = 96/727 (13%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVVGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E E + ++ L+EV R+L+ GG+++C++LA++HVL F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADK--ENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 252
H + Q +EP SL F + K + LQ+ F+ + + K E
Sbjct: 184 HQVASSQDQLLEAEPRFSLPVFAFIMTKFRPVTGSALQI---FELCAQEQGKPVRLESAE 240
Query: 253 ALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAV- 311
L + R++Y+ LY K + ++S +L G G+ ++ V
Sbjct: 241 QLAEAVRERQQYAWLCSQLYR--------KAGLGSVS----LDLCNGDTGEPRYTLHVVD 288
Query: 312 ---LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSH 368
+ +R+N + +FI+P+ R EWLF EEG+ + S+ RLI V L
Sbjct: 289 SPTVKPSRDN------HFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQ 342
Query: 369 ASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVED 428
MD IQ +LS V +LAP Q+PF+ G I R V HQA S L+G ++ED
Sbjct: 343 QYEGMDSIQAELSARVMELAPAGMPAQLQVPFLSVGGDIGVRIVQHQACSPLSGDYVIED 402
Query: 429 LVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTD---VETERKKA 485
+ + D + FRRL+F + +VQSEA L++D SHR + +K
Sbjct: 403 V--QGDDKRY----------FRRLIFLSNRNVVQSEARLLQD-VSHRAQKKRKKDRKKHR 449
Query: 486 SSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKA 545
+ + Q +S D YL +H +I+G L+ + + +
Sbjct: 450 PADTPEDLPAAQGQSIDK--------SYLCCEHHKAMIAGLALLKN---PELLLETPLAL 498
Query: 546 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVR 605
+V+GLG G LP+F+H+ P I AVE+D +ML +A +FGF+Q +KVHI DG+ F+
Sbjct: 499 LVVGLGGGSLPLFIHDHFPKSCIHAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDFIT 558
Query: 606 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD 665
+ A D+++ DVDS D + GM+CP
Sbjct: 559 RLAEEEA---------------------------RPHYDVIMFDVDSKDPTLGMSCPPPA 591
Query: 666 FVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLF 725
FV FL VK L+ +G+FI+NLV R KD V++ +K VF L+ ++E +VN +LF
Sbjct: 592 FVAQLFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILF 651
Query: 726 GLSSESC 732
C
Sbjct: 652 CQLHSEC 658
|
Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 329 bits (844), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 236/717 (32%), Positives = 358/717 (49%), Gaps = 90/717 (12%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M N R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E E + ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADK--ENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 252
H + Q +EP SL F + K LQ+ F+ + + K E
Sbjct: 184 HQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQI---FELCAQEQRKPVRLESAE 240
Query: 253 ALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAV- 311
L Q R++Y+ QL K + ++S +L G G+ ++ V
Sbjct: 241 RLAEAVQERQQYAWLCS--------QLRRKARLGSVS----LDLCDGDTGEPRYTLHVVD 288
Query: 312 ---LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSH 368
+ +R+N + +FI+P+ R EWLF +EG+ + S+ RLI V L
Sbjct: 289 SPTVKPSRDN------HFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQ 342
Query: 369 ASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVED 428
SMD IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED
Sbjct: 343 QYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIED 402
Query: 429 LVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSS 488
+ + D + FRRL+F + +VQSEA L++D S + +K
Sbjct: 403 V--QGDDKRY----------FRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRP 450
Query: 489 SKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVI 548
+ ++ + + YL +H +I+G L+ + + + +V+
Sbjct: 451 ADAE-------DLPAAPGQSIDKSYLCCEHHKAMIAGLALLRN---PELLLEIPLALLVV 500
Query: 549 GLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 608
GLG G LP+F+H+ P I+AVE+D +ML +A +FGF+Q +KVHI DG+ ++
Sbjct: 501 GLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYI---- 556
Query: 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 668
S+ G E R C D+++ DVDS D + GM+CP FVE
Sbjct: 557 -------ASLAGGGE-----ARPC----------YDVIMFDVDSKDPTLGMSCPPPAFVE 594
Query: 669 GSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLF 725
SFL VK L+ +G+FI+NLV R KD V++ +K VF L+ ++E +VN +LF
Sbjct: 595 QSFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILF 651
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (833), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 233/722 (32%), Positives = 358/722 (49%), Gaps = 101/722 (13%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQQRG-KTAFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT ++F D TF V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLEFPDATFQVVLDKGT 123
Query: 144 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E E+ + ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 124 LDAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRA 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADK--ENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 252
H + + S +EP SL F V K LQ+ C + Q +
Sbjct: 184 HQVASSQDRVSEAEPRFSLPVFAFVMTKFRPVPGSALQIFEL-------CTQEQGKPVR- 235
Query: 253 ALESENQ-----TRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFS 307
LES +Q R+Y Y+ QL K + ++S +L G G+ ++
Sbjct: 236 -LESADQLAEAVRERQY-------YAWLCSQLRRKAGLGSVS----LDLCSGDTGEPRYT 283
Query: 308 YRAV----LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVL 363
V + +R+N + +FI+P+ R EWLF EEG+ + S+ RL+ V
Sbjct: 284 LHVVDNPAVKPSRDN------HFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLVTVA 337
Query: 364 LDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGP 423
L A M+ IQ +LS V +LAP Q+PF+ G I R V HQ S+L+G
Sbjct: 338 LHRGQRYAGMESIQAELSARVMELAPAGLPPQQQVPFLSVGGDIGVRTVQHQDHSALSGD 397
Query: 424 IIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERK 483
++ED+ E+ W FRRL+F + +VQSEA L++D +SHR + ++
Sbjct: 398 YVIEDVQGEDR-------W-----YFRRLIFLSNRNVVQSEARLLKD-TSHRAQKKRKKD 444
Query: 484 KASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSV 543
+ + S ++ YL +H +++G L+ + + +
Sbjct: 445 RKKQRPADTSEDFPPAPGQSIDK-----SYLCCEHHKAMVAGLALLRN---PELLLETPL 496
Query: 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603
+V+GLG G LP+F+H+ P I+AVE+D TML +A +FGF+Q +KVHI DG+ +
Sbjct: 497 TLLVVGLGGGSLPLFVHDHFPKSRIDAVEIDPTMLEVATQWFGFSQSDRMKVHIADGLDY 556
Query: 604 VREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA 663
+ + + D+++ DVDS D + GM+CP
Sbjct: 557 ITSLAGEAP----------------------------PHYDVIMFDVDSKDPTLGMSCPP 588
Query: 664 ADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLV 723
FV+ FL VK L G+FI+NLV R KD V++ +K F L+ ++E +VN +
Sbjct: 589 PAFVDQVFLQKVKSILCHDGVFILNLVCRDVRLKDSVLAGLKAAFPLLYVRRIEGEVNEI 648
Query: 724 LF 725
LF
Sbjct: 649 LF 650
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 224/737 (30%), Positives = 360/737 (48%), Gaps = 85/737 (11%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F+S + W++FF RG +FEWY ++ L L I P ++LV GC
Sbjct: 4 LPRTAEEFSSADYWERFFRKRG-EKAFEWYGDYNSLCGVLHKYI-----KPRDKVLVVGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDV 137
GNS LSE LYD G+ +TN+D S+ V+S M +RN R D+ ++ +D T F +F V
Sbjct: 58 GNSELSEQLYDVGYRQLTNIDISETVVSHMNQRNAERRPDLSFQQLDATQTGFESGSFQV 117
Query: 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 197
LDKG LDA+ E G L + L+EV R+L GG++VC+TLA+ HV+ L F GW
Sbjct: 118 TLDKGTLDAMASEEDG-ALAGRMLAEVGRVLAVGGRYVCITLAQEHVIKLAVEHFVKGWA 176
Query: 198 MSVHAIP----QKSSSEPSLQTFMVVADKENSS---VVLQVTSSFDHSSLDCNKNQAFGI 250
+ VH + ++S S +L F++V K + VL++ D +
Sbjct: 177 VRVHCLTGQQNEESDSSFALPVFVLVCTKFRQAPPFAVLELCQGEDGAP------ARLAS 230
Query: 251 HEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRA 310
E L S + R+ Y+ +L+ L+ G + +P G + + +
Sbjct: 231 VEELLSAVKERQAYNL---MLHKLKG------GTDSSSTPSLTLCHAASGRPRYTLTIQD 281
Query: 311 VLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHAS 370
A+ P + +FIVP+ R +WL+ S EG+ + S+K RL++V +
Sbjct: 282 GPPSAKT---PRSNHFAIFIVPQGRESDWLYGSAEGRAQLASSAKFRRLVIVAMHRDQEY 338
Query: 371 ASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLV 430
M +Q +LSP+V +LAP Q+PF+ G + R V+ + S+LTG VED+
Sbjct: 339 EDMQAVQSELSPVVMELAPPGMPANQQVPFLSVGGDLGWREVIGRGLSALTGEYSVEDVR 398
Query: 431 YENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSK 490
E+ +RRL+F LVQSE+ L ++ + +KKA +
Sbjct: 399 GED------------GYLYRRLIFMNNSQLVQSESRLQSAAAASSASKKKNKKKAKQPAS 446
Query: 491 SKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGL 550
+ G + RS D G+L ++H +++G ++ ++++ + + V +++GL
Sbjct: 447 T---GAKDRSVD--------RGFLCCTHHEVMVAGLAMLG--MDAINNKDQPVSVLLVGL 493
Query: 551 GAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSS 610
G G LP F+ + +P +E VELD +L++A+ +FGF D LKV + DG+ + ++S
Sbjct: 494 GGGGLPQFVRDFVPCARVEVVELDPVVLDVAQTWFGFQIDDRLKVTLGDGLDHITTLESE 553
Query: 611 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670
D+++ DVDS D++ GM+CP FVE S
Sbjct: 554 G----------------------------ERYFDVIMFDVDSKDTTLGMSCPPPAFVETS 585
Query: 671 FLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 730
L V LS +GLF++NLV R A + V+ R+ VF +F +E +VN VL S
Sbjct: 586 LLKKVYSLLSPRGLFMLNLVCRDSALRKSVLDRVHSVFPCVFSRGIEGEVNEVLLCCRSS 645
Query: 731 SCIKDNSFPEAAVQLGK 747
K ++ P+ Q K
Sbjct: 646 GEHKPHTVPQTLQQTAK 662
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura pseudoobscura GN=GA15401 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 218/726 (30%), Positives = 328/726 (45%), Gaps = 114/726 (15%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLDLCDHIHKYI-----KPVDKILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDV 137
GNS+LS +YD+ + ITN+D S V + ML +N R R DM++ MD T+M F DE+F V
Sbjct: 58 GNSKLSMDMYDSEYRDITNIDISPVAVKKMLEQNARTRPDMKFLQMDATAMTFPDESFSV 117
Query: 138 ILDKGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL---FPK 191
LDKG LDAL PE + N Y E+ R +++GG++ C++L + H+L L P+
Sbjct: 118 ALDKGTLDALFVDDAPETKAVVEN-YFKEILRTMRNGGRYFCVSLLQEHILNFLVEFLPR 176
Query: 192 ----FRFGWKMSVHAIPQKSSSEPSLQ--TFMVVADKENSSVVLQVTSSFDHSSLDCNKN 245
R + V ++ +++ +++ F+V+A K S + L +K
Sbjct: 177 HNCMLRIVHCLGVEQANKEKNADDAMKMPVFVVIATKFKS-----LPMPILEFGLGNDKM 231
Query: 246 QAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGC-RFELILGGEGDF 304
Q F E S S+ + S++ L G ++ G L L +
Sbjct: 232 QRFT-------------ESSELSNAVRSVQKAALVFNGLARSSIAGHDEVTLDLYRPSEN 278
Query: 305 CFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLL 364
Y +LD G Y FIVP+ R EWLF + G+ + S+K RL +V L
Sbjct: 279 TPRYSIYILDQAAARGLNKY--AAFIVPQGREIEWLFGTPSGRKKLQASAKFQRLAVVTL 336
Query: 365 DTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPI 424
+++E+Q +L V LAP QIP++ G + R + S ++G
Sbjct: 337 HRDQVYNTLEEVQAELGDTVFSLAP--HGHIKQIPYLSLGSDVGKRETLISGFSKISGEF 394
Query: 425 IVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKK 484
+E++ + RRL+F Q +VQSEAL V+T + K
Sbjct: 395 RIEEV-------------EAGGKTLRRLIFLSNQFVVQSEAL-----------VKTIKIK 430
Query: 485 ASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVK 544
K GYLA +H+ + G L ++ V K V
Sbjct: 431 GKKERKKID-----------------FGYLACQHHLYMSVGVQLATTLQNPKKDVQKDV- 472
Query: 545 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFV 604
+VIGLG G L FLH +P I AVE+D ML +AE YF QDK V I DG+ FV
Sbjct: 473 -LVIGLGGGGLCSFLHAALPQSRITAVEIDPIMLEVAEQYFELKQDKRFHVVIDDGLAFV 531
Query: 605 REMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA 664
C + D ++ DVDS D S GM+CP
Sbjct: 532 E-----------------------------RCRNEDIHFDAVLFDVDSKDLSLGMSCPPQ 562
Query: 665 DFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVL 724
F+ LL +K+ + +GLF++NLV R + K I+ ++ VF + +LEED+N V+
Sbjct: 563 GFLAHDVLLHIKEIIGPKGLFMLNLVCRDETLKTEAIANLQKVFPAVCSYKLEEDINEVV 622
Query: 725 FGLSSE 730
+ + E
Sbjct: 623 YCANDE 628
|
Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster GN=CG2614 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 211/728 (28%), Positives = 332/728 (45%), Gaps = 118/728 (16%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ +L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLELCDQIHKYI-----KPADRILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDV 137
GNS+LS +YD GF ITN+D S + + ML N + R +M++ MD T+M F DE+F V
Sbjct: 58 GNSKLSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKFLQMDATAMTFPDESFSV 117
Query: 138 ILDKGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL---FPK 191
LDKG LDAL EPE + N Y E+ R +++GG++V ++L + H+L L PK
Sbjct: 118 SLDKGTLDALFADDEPETRAVVEN-YFKEILRTMRNGGRYVGISLLQEHILNFLLDFLPK 176
Query: 192 FRFGWKMSVHAIPQKSSSEP-------SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNK 244
++ VH + + +++ +L F+VVA K S + + F + +K
Sbjct: 177 HNCMLRI-VHCLGVEQANKEKNADDALTLPVFVVVATKFKSLPMPVLEFGFGN-----DK 230
Query: 245 NQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMK-NLSPGCRFELILGGEGD 303
Q F L S + S++ L G + N++ + L +
Sbjct: 231 MQRFTTVSELNSA-------------VSSVQKAALVCNGLARSNIAGHNEVIMDLHRPSE 277
Query: 304 FCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVL 363
Y +LD G Y FIVP+ R EW+FS+ G+ + +S+ RL +V
Sbjct: 278 QTPRYTIHILDKPPARGLGKY--AAFIVPQGREVEWIFSTPAGRKKLQDSANFQRLAVVT 335
Query: 364 LDTSHASASMDEIQKDLSPLVKQLAP-GKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTG 422
L +++DE++++L+ +K L+P G D QIP++ G + R + S ++G
Sbjct: 336 LHRDQVYSTLDEVKQELADSIKNLSPAGLTD---QIPYLSLGSDVGKRETLICGFSKISG 392
Query: 423 PIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETER 482
+E++ + RRL+F Q +VQSEAL V+T +
Sbjct: 393 DFRIEEV-------------EANGKTLRRLIFLSNQFVVQSEAL-----------VKTVK 428
Query: 483 KKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKS 542
K K GYLA +H+ + G L ++ V K
Sbjct: 429 IKGKKDRKKID-----------------FGYLACQHHLYMSVGVQLATTVQHPKRDVEKD 471
Query: 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 602
V V +G G FLH +P I AVE+D ML +AE YF QDK V I DG+
Sbjct: 472 VLVVGLGGGGLC--SFLHAALPQARITAVEIDPIMLEVAEQYFELKQDKRFHVVIDDGLD 529
Query: 603 FVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 662
FV C + D ++ DVDS D S GM+CP
Sbjct: 530 FVE-----------------------------RCRNEDIHFDAVLFDVDSKDLSLGMSCP 560
Query: 663 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNL 722
F+ L +K+ + +GLF++NLV R ++ + ++ + VF + +LEED+N
Sbjct: 561 PQSFLATKILQHIKEIIGPKGLFMLNLVCRDESLRTEALNNLHKVFPAVCSYKLEEDINE 620
Query: 723 VLFGLSSE 730
+++ + E
Sbjct: 621 IIYCANDE 628
|
Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 215/445 (48%), Gaps = 75/445 (16%)
Query: 327 GVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMDEIQKDLSPLVKQ 386
+FI+P R EWLF SE+G+ + S RLI+V L M IQ +LS V +
Sbjct: 299 AIFIIPHGRETEWLFGSEQGRKQLAGSVGFNRLIIVALHRDQQYTDMKAIQSELSAKVLE 358
Query: 387 LAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSED 446
LAP QIPF+ AG+ I R + H+ S +G +VED+ + +
Sbjct: 359 LAPPGLPDNQQIPFLSAGEDIGSRTIQHRGKSEFSGEYVVEDVRGDG------------N 406
Query: 447 LKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDDSGNQ 506
+RRL+F Q +VQSEA L+ + ++KK K + T R D S
Sbjct: 407 SSYRRLIFLSNQNVVQSEARLLPISTHIGQKKRKDKKKQQKPVKDLEQPTITRIDKS--- 463
Query: 507 LKVYHGYLASSYHMGIISGFTLISS---YLESVASVGKSVKAVVIGLGAGLLPMFLHECM 563
YL +H +ISG L+ + E ASV +VIGLG G L +F+H+
Sbjct: 464 ------YLCCEHHKAMISGLALLPNPGLLPECQASV------LVIGLGGGSLSLFIHDYF 511
Query: 564 PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 623
P +E VE+D ++L++A ++F F QD+ +KVH+ DG+ VH N
Sbjct: 512 PGSRVEVVEIDPSVLDVASNWFNFCQDERMKVHLADGL-----------------VHINS 554
Query: 624 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG 683
+ ++N +C D+++ DVDS D S GM+CP FVE FL V + L+ G
Sbjct: 555 L-ADNGEAC----------YDVIMFDVDSKDPSVGMSCPPPAFVEKMFLQNVHNILNANG 603
Query: 684 LFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAV 743
+FI+NLV R + V++ + VF ++ +++E+VN +LF C ++
Sbjct: 604 VFILNLVCRDTDLRLKVLNVLHEVFPLIYAQKIDEEVNEILF------CRPNSE------ 651
Query: 744 QLGKLVKFQHLEISQSIMDAAKKIR 768
KF LE+ +S + KK+R
Sbjct: 652 -----RKFSSLELKESAKNLEKKLR 671
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q10711|ECE2_BOVIN Endothelin-converting enzyme 2 OS=Bos taurus GN=ECE2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 12 SSSATDLLQTLGDFTSKENWDKFFTIRGIGDS--FEWYAEWPQLRDPLISLIGAPTSSPP 69
S+ +L + + + WD+ + +G DS +EW+ ++ RD L P P
Sbjct: 7 SAQVPELPEKNCGYREVQYWDQRY--QGAADSAPYEWFGDFSCFRDLL-----EPELRPL 59
Query: 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129
+ILV GCGNS LS L+ GF +T+VD+S VV++ M R + +RW MD+ ++
Sbjct: 60 DRILVLGCGNSALSYELFLGGFPDVTSVDYSSVVVAAMRARYAHVPT-LRWETMDVRALG 118
Query: 130 FMDETFDVILDKGGLDALMEPE 151
F +FDV+L+KG LDAL+ E
Sbjct: 119 FPSGSFDVVLEKGTLDALLTGE 140
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|O60344|ECE2_HUMAN Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 10/125 (8%)
Query: 29 ENWDKFFTIRGIGDS--FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
E WD+ + +G DS ++W+ ++ R L P P +ILV GCGNS LS L
Sbjct: 24 EYWDQRY--QGAADSAPYDWFGDFSSFRALL-----EPELRPEDRILVLGCGNSALSYEL 76
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146
+ GF +T+VD+S VV++ M R+ +RW MD+ + F +FDV+L+KG LDA
Sbjct: 77 FLGGFPNVTSVDYSSVVVAAMQARHAH-VPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 135
Query: 147 LMEPE 151
L+ E
Sbjct: 136 LLAGE 140
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q80Z60|ECE2_MOUSE Endothelin-converting enzyme 2 OS=Mus musculus GN=Ece2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
WD+ + +EW+ ++ R L P P +ILV GCGNS LS L+ G
Sbjct: 26 WDQRYKDAADSGPYEWFGDFASFRALL-----EPELCPEDRILVLGCGNSALSYELFLGG 80
Query: 91 FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM-- 148
F +T+VD+S VV++ M R S +RW MD+ ++ F +FDV+L+KG LDA++
Sbjct: 81 FPNVTSVDYSPVVVAAMQVRYAHVPS-LRWETMDVRALDFPSGSFDVVLEKGTLDAMLAG 139
Query: 149 EPEL------GHKLGNQYLSEV 164
EP+ G +Q LSEV
Sbjct: 140 EPDPWNVSSEGVHTVDQVLSEV 161
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 771 | ||||||
| 224060357 | 779 | predicted protein [Populus trichocarpa] | 0.993 | 0.983 | 0.711 | 0.0 | |
| 359477926 | 782 | PREDICTED: methyltransferase-like protei | 0.985 | 0.971 | 0.693 | 0.0 | |
| 255554026 | 761 | S-adenosylmethionine-dependent methyltra | 0.985 | 0.998 | 0.702 | 0.0 | |
| 356512463 | 761 | PREDICTED: methyltransferase-like protei | 0.979 | 0.992 | 0.658 | 0.0 | |
| 356512461 | 762 | PREDICTED: methyltransferase-like protei | 0.976 | 0.988 | 0.657 | 0.0 | |
| 449432402 | 752 | PREDICTED: methyltransferase-like protei | 0.972 | 0.997 | 0.677 | 0.0 | |
| 34148076 | 763 | putative spermine/spermidine synthase [G | 0.980 | 0.990 | 0.650 | 0.0 | |
| 356525225 | 763 | PREDICTED: methyltransferase-like protei | 0.976 | 0.986 | 0.650 | 0.0 | |
| 298205206 | 748 | unnamed protein product [Vitis vinifera] | 0.926 | 0.954 | 0.650 | 0.0 | |
| 297826625 | 762 | hypothetical protein ARALYDRAFT_902209 [ | 0.975 | 0.986 | 0.633 | 0.0 |
| >gi|224060357|ref|XP_002300159.1| predicted protein [Populus trichocarpa] gi|222847417|gb|EEE84964.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/784 (71%), Positives = 640/784 (81%), Gaps = 18/784 (2%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGKK K SS +S +LL TLGDFTSKENWDKFFTIRG DSFEWYAEW +L PL+SL
Sbjct: 1 MGKKDKQ--SSKASTEELLTTLGDFTSKENWDKFFTIRGTDDSFEWYAEWTELHHPLLSL 58
Query: 61 IG------APTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD 114
+ + +SSP +ILVPGCGNS+LSE+LYDAGF ITN+DFSKVVISDMLRRNVRD
Sbjct: 59 LAGNDENHSSSSSPLLKILVPGCGNSKLSENLYDAGFKEITNIDFSKVVISDMLRRNVRD 118
Query: 115 RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 174
R MRWRVMDMT MQ DE+FDV+LDKGGLDALMEPELG KLGNQYLSEVKR+L GKF
Sbjct: 119 RPGMRWRVMDMTQMQLADESFDVVLDKGGLDALMEPELGPKLGNQYLSEVKRVLNFEGKF 178
Query: 175 VCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSS 234
+CLTLAESHVL LLF KFRFGWKMSV AIPQK SS+P L+TFMVVA+KENSS + +T+
Sbjct: 179 ICLTLAESHVLALLFSKFRFGWKMSVQAIPQKPSSKPDLRTFMVVAEKENSSALHFITAL 238
Query: 235 FDHSSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRF 294
FDHSSLDC NQA G+HEALE+ENQ R+EYS G DILYSLEDL +GAKGD+ LS G RF
Sbjct: 239 FDHSSLDCIGNQAIGLHEALENENQIRKEYSIGPDILYSLEDLLIGAKGDLSKLSLGRRF 298
Query: 295 ELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESS 354
+L LGG GD FSY+A++LDA+E+S F Y+CGVFIVPKTRAHEWLFSSEEGQWLVVESS
Sbjct: 299 QLTLGGNGDSRFSYKAIVLDAKESSSQFTYHCGVFIVPKTRAHEWLFSSEEGQWLVVESS 358
Query: 355 KAARLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVH 414
KAARLIM+++D+SH +ASMD+IQKDLSPLVKQLAPGKDD AQIPFMMAGDGIK R VH
Sbjct: 359 KAARLIMIIMDSSHNNASMDDIQKDLSPLVKQLAPGKDDNSAQIPFMMAGDGIKERKTVH 418
Query: 415 QATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSH 474
+ TSSLTG IIVED+VYENV + SR +PS DL FRRLVFQR +GLVQSEALL RD SSH
Sbjct: 419 KVTSSLTGSIIVEDVVYENVADDVSRPFPSSDLIFRRLVFQRAEGLVQSEALLTRDESSH 478
Query: 475 RTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLE 534
+ E KK +SSSKSK+KG+Q+R+D S LKVYH Y+ASSYHMGI+SGFTL+SSYLE
Sbjct: 479 KI---VEEKKKTSSSKSKKKGSQKRNDASSKILKVYHDYMASSYHMGIVSGFTLMSSYLE 535
Query: 535 SVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK 594
SV S GK+V AV+IGLGAGLLPMFLH CMP + IE VELD +L+LA DYFGF +D+ LK
Sbjct: 536 SVESTGKTVNAVIIGLGAGLLPMFLHGCMPSLQIEVVELDAVVLSLARDYFGFAEDERLK 595
Query: 595 VHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSC---NGNCTASNA----RVDILI 647
VHI DGI+FVRE+K+ + D + +HG E S +T+ +G+ + + RVDILI
Sbjct: 596 VHIADGIRFVREVKNFAVADGLPAIHGIEDASGSTKPSPDESGSVSYTEGRGRPRVDILI 655
Query: 648 IDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMV 707
IDVDS DSSSGM CPAADFVE SFLLTVKD LSEQGLFIVNLVSRS A KD +ISRMK V
Sbjct: 656 IDVDSSDSSSGMACPAADFVEESFLLTVKDTLSEQGLFIVNLVSRSPAVKDTIISRMKAV 715
Query: 708 FNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKI 767
FNHLF LQLEED+N+VLFGL SE C+K++ FPEAA QL KL+KF+H EI QSI+D+ KKI
Sbjct: 716 FNHLFSLQLEEDINMVLFGLCSEVCLKEDCFPEAACQLDKLLKFKHQEIGQSIIDSTKKI 775
Query: 768 RCLK 771
R LK
Sbjct: 776 RRLK 779
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477926|ref|XP_002263181.2| PREDICTED: methyltransferase-like protein 13-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/793 (69%), Positives = 641/793 (80%), Gaps = 33/793 (4%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
M KKK+++ +LLQTLGDFTSKENWDKFFTIRG DSFEWYAEWPQL+DPL+S
Sbjct: 1 MSKKKQSEE-------ELLQTLGDFTSKENWDKFFTIRGSDDSFEWYAEWPQLKDPLLSH 53
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ + PP QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR R DMRW
Sbjct: 54 LSSTPPPPPLQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRSRPDMRW 113
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
RVMD+TSMQF D +FD ILDKGGLDALMEPELG KLG YL+EVKR+LKSGGKF+ LTLA
Sbjct: 114 RVMDITSMQFPDGSFDAILDKGGLDALMEPELGPKLGKMYLTEVKRVLKSGGKFIGLTLA 173
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVLGLLF KFRFGWKMS+H + QK S++PSL TFMVVA+KE+S+V+ Q+T+SF SSL
Sbjct: 174 ESHVLGLLFSKFRFGWKMSIHVVSQKPSNKPSLLTFMVVAEKESSTVLHQITTSFARSSL 233
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
D N NQA G++EA+E+EN+ RREYS+GSD++YSLEDLQLGAKGD+ LS G RF+L LG
Sbjct: 234 DLNGNQARGLYEAIENENRIRREYSNGSDLIYSLEDLQLGAKGDLLELSQGRRFQLTLGE 293
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
FSYRAV+LDAR+ + PF+Y+CGVF+VPKTRAHEWLFSSEEGQW+VVESSKAARLI
Sbjct: 294 YEGSRFSYRAVVLDARQMTEPFLYHCGVFLVPKTRAHEWLFSSEEGQWMVVESSKAARLI 353
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MVLLDTSH +ASMD+IQKDLSPLVK+LAP ++ GAQIPFM+AGDGIK R +VHQ TS+L
Sbjct: 354 MVLLDTSHTNASMDDIQKDLSPLVKRLAPANNNTGAQIPFMIAGDGIKQRKIVHQVTSTL 413
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG I VED+VYENVD + S + PS+ L FRRL FQR +GLVQSEALL R+G + + ET
Sbjct: 414 TGLITVEDVVYENVDGKVSHLVPSKALLFRRLTFQRAEGLVQSEALLTREGGTQKIVSET 473
Query: 481 ERKKASSSSKSKRKGTQRRSDD-----SGNQLKVYHGYLASSYHMGIISGFTLISSYLES 535
ERKK+ SSSKS++KG Q++ D S N LKVYH YLASSYHMGIISGF LISSYLES
Sbjct: 474 ERKKSISSSKSRKKGNQKKIDSLAIHGSSNNLKVYHNYLASSYHMGIISGFMLISSYLES 533
Query: 536 VASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595
VAS G++VKAVVIGLGAGLLPMFLH CMPF+ IE VELD +LNLA +YFGF +DK LKV
Sbjct: 534 VASTGRTVKAVVIGLGAGLLPMFLHGCMPFLDIEVVELDPVILNLARNYFGFCEDKHLKV 593
Query: 596 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTR--SCNGNCTASNA------RVDILI 647
HI DGI+FVR + A D +S H N + S NG+CTAS+A + DILI
Sbjct: 594 HIADGIQFVRGV----AADGVSGKHVNNDAQCDAECPSSNGSCTASHAERKVISKFDILI 649
Query: 648 IDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMV 707
IDVDS DSSSGMTCPAADFV+ SFLLTVKD+LS+QGLF+VNLVSRS+A K+MV+SRMK V
Sbjct: 650 IDVDSSDSSSGMTCPAADFVDESFLLTVKDSLSDQGLFVVNLVSRSRAIKNMVVSRMKAV 709
Query: 708 FNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLV---------KFQHLEISQ 758
F+HLFCLQLEEDVN VLF L +E CIK+ F EAAV+L KL+ K + E+SQ
Sbjct: 710 FSHLFCLQLEEDVNEVLFALRTEDCIKEEQFGEAAVELEKLLSWDRNDLPEKSKPPEMSQ 769
Query: 759 SIMDAAKKIRCLK 771
I D+ +KI+CLK
Sbjct: 770 IIRDSTEKIKCLK 782
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554026|ref|XP_002518053.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223542649|gb|EEF44186.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1048 bits (2709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/772 (70%), Positives = 642/772 (83%), Gaps = 12/772 (1%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGK+ K QS SS+ DLL+TLGDFTSKENWDKFFTIRG DSFEWYAEWPQLR PL+SL
Sbjct: 1 MGKRDKQQSQPSSN--DLLETLGDFTSKENWDKFFTIRGADDSFEWYAEWPQLRQPLLSL 58
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
S P QIL+PGCGNSRLSE+LYD GF ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 59 FANDDS--PVQILMPGCGNSRLSENLYDLGFKDITNIDFSKVVISDMLRRNVRDRPGMRW 116
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
RVMDMT MQF DETFDV+LDKGGLDALMEPELG KLG +YLSEV+R+LK GGKF+CLTLA
Sbjct: 117 RVMDMTDMQFADETFDVVLDKGGLDALMEPELGPKLGTKYLSEVQRVLKFGGKFICLTLA 176
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVLGLLF KFRFGWK+++HAIP +S+PSL+TFMV A+K N S + + SSFDH ++
Sbjct: 177 ESHVLGLLFSKFRFGWKLNIHAIPWNLASKPSLRTFMVAAEKGNLSDLHLIMSSFDHYTV 236
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
C+ NQA +HEALE+EN+ R+EYS GSDILYSLEDL+LGAKGD+ LS G R +L LGG
Sbjct: 237 GCSGNQAASLHEALENENRIRKEYSSGSDILYSLEDLRLGAKGDLTKLSQGRRIQLTLGG 296
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
+G F+Y+AVLLDA+ENS PF ++CG+FIVPKTRAHEWLF SEEGQW+VVESS+AARLI
Sbjct: 297 QGGSRFTYKAVLLDAKENSAPFSFHCGIFIVPKTRAHEWLFCSEEGQWMVVESSQAARLI 356
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MV+LD+SH S++MD+IQKDLSPLVKQLAPG+ D GAQIPFMMAGDGIK RNVVH+ TSSL
Sbjct: 357 MVILDSSHTSSTMDDIQKDLSPLVKQLAPGEGDNGAQIPFMMAGDGIKQRNVVHEVTSSL 416
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG IIVED+VYE+VD + S + PS+DL FRRLVFQRT+GLVQSE LL RD ++
Sbjct: 417 TGSIIVEDVVYEDVDDDVSCLLPSKDLIFRRLVFQRTEGLVQSEGLLKRDEFCNKIS-GI 475
Query: 481 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 540
++KK +SSSKSK++G ++++D+S NQLKVYH YLASSYH GIISGF LISSYLESV S G
Sbjct: 476 DKKKKTSSSKSKKRGNKKQNDESSNQLKVYHDYLASSYHTGIISGFMLISSYLESVESAG 535
Query: 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG 600
+V VV+GLGAGLLPMFLH C+PF+ +E VELD +L LA+DYFGF +DK LKVHITDG
Sbjct: 536 NTVNTVVVGLGAGLLPMFLHGCLPFLHLEVVELDPVVLALAKDYFGFIEDKHLKVHITDG 595
Query: 601 IKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSGM 659
I+FVRE+K+ + D NE+ S +++ C + S++ +D+LIIDVDS DSSSGM
Sbjct: 596 IRFVREVKNYAPADR------NEVASGSSKPCQNHAEGSSSPGIDVLIIDVDSSDSSSGM 649
Query: 660 TCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEED 719
TCPAADFVE SFLLTVKD+LSE+GLF+VNLVSRS A KDMVISRMK VF+HLF LQLEED
Sbjct: 650 TCPAADFVEESFLLTVKDSLSEKGLFVVNLVSRSSAIKDMVISRMKTVFSHLFSLQLEED 709
Query: 720 VNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 771
VN+VLFGL SESC+K++SFPEAA+QL KL+KF+H EI Q ++D KKI+CLK
Sbjct: 710 VNMVLFGLCSESCMKEDSFPEAALQLEKLLKFKHPEIGQKVIDTTKKIKCLK 761
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512463|ref|XP_003524938.1| PREDICTED: methyltransferase-like protein 13-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/777 (65%), Positives = 612/777 (78%), Gaps = 22/777 (2%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWDKFFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKGKKKGSPE----DILETLGDFTSKENWDKFFTLRG--DSFEWYAEWPNLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ T P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 55 L--KTVPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVISDMLRRNVRDRPLMRW 112
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
R+MDMT+MQF DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 113 RIMDMTAMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 172
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 173 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 232
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
CN Q G+HEAL++ENQ R +YS GS++LYS+EDLQ ++ LS G R +L LGG
Sbjct: 233 HCNSKQVSGLHEALQNENQIREKYSSGSNLLYSVEDLQ----EELTKLSQGRRLQLTLGG 288
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SS+AARLI
Sbjct: 289 QGYSTFSYRAVILDAEEQASPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSEAARLI 348
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MV LD SH+ SM+EIQKDLSPLV QLAP +++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 349 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENENGAKIPFMMASEGIKERNIIHKVTSSL 408
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + S + ET
Sbjct: 409 TGSIIVEDVIYENVDSEVSCIFPSRELVFRRLVFERAANLVQSEALLKDEQSPTKLVSET 468
Query: 481 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 540
RKK ++SSKS++ G+QR S + +QL VYHGY+ASSYH GIISGFTLISSY+E+VAS G
Sbjct: 469 GRKKNNASSKSRKSGSQRHSIGASSQLTVYHGYVASSYHTGIISGFTLISSYMENVASSG 528
Query: 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG 600
K VKAV+IGLGAGLL MFLH C+PF+ IE VELD ++++A DYF F +DK LKVH+ DG
Sbjct: 529 KMVKAVIIGLGAGLLSMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKRLKVHVADG 588
Query: 601 IKFVREMKSSSATDEMSVVHGNEITSNNTRSC-NGNCTASNA-----RVDILIIDVDSPD 654
I+FVRE+ SS A +HG +NT S N + T S+A +VDI+I+DVDS D
Sbjct: 589 IQFVREIDSSGAPQ----IHGKSNDPSNTESALNASSTVSHAGVKVTKVDIIIVDVDSSD 644
Query: 655 SSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 714
SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+HLFCL
Sbjct: 645 PSSGLTCPAPDFLDESFLETVKDKLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSHLFCL 704
Query: 715 QLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 771
QL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR LK
Sbjct: 705 QLDEDVNEVHFALKSESCIEDSCFSEASLKLHKLLEFKHPEIGQNIINATKKIRHLK 761
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512461|ref|XP_003524937.1| PREDICTED: methyltransferase-like protein 13-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/780 (65%), Positives = 611/780 (78%), Gaps = 27/780 (3%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWDKFFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKGKKKGSPE----DILETLGDFTSKENWDKFFTLRG--DSFEWYAEWPNLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ T P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 55 L--KTVPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVISDMLRRNVRDRPLMRW 112
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
R+MDMT+MQF DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 113 RIMDMTAMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 172
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 173 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 232
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
CN Q G+HEAL++ENQ R +YS GS++LYS+EDLQ ++ LS G R +L LGG
Sbjct: 233 HCNSKQVSGLHEALQNENQIREKYSSGSNLLYSVEDLQ----EELTKLSQGRRLQLTLGG 288
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SS+AARLI
Sbjct: 289 QGYSTFSYRAVILDAEEQASPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSEAARLI 348
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MV LD SH+ SM+EIQKDLSPLV QLAP +++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 349 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENENGAKIPFMMASEGIKERNIIHKVTSSL 408
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + S + ET
Sbjct: 409 TGSIIVEDVIYENVDSEVSCIFPSRELVFRRLVFERAANLVQSEALLKDEQSPTKLVSET 468
Query: 481 ERKKASSSSKSKRKGTQRRSDDSGNQ---LKVYHGYLASSYHMGIISGFTLISSYLESVA 537
RKK ++SSKS++ G+QR S GN L VYHGY+ASSYH GIISGFTLISSY+E+VA
Sbjct: 469 GRKKNNASSKSRKSGSQRHS--IGNYFPLLTVYHGYVASSYHTGIISGFTLISSYMENVA 526
Query: 538 SVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI 597
S GK VKAV+IGLGAGLL MFLH C+PF+ IE VELD ++++A DYF F +DK LKVH+
Sbjct: 527 SSGKMVKAVIIGLGAGLLSMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKRLKVHV 586
Query: 598 TDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSC-NGNCTASNA-----RVDILIIDVD 651
DGI+FVRE+ SS A +HG +NT S N + T S+A +VDI+I+DVD
Sbjct: 587 ADGIQFVREIDSSGAPQ----IHGKSNDPSNTESALNASSTVSHAGVKVTKVDIIIVDVD 642
Query: 652 SPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHL 711
S D SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+HL
Sbjct: 643 SSDPSSGLTCPAPDFLDESFLETVKDKLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSHL 702
Query: 712 FCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 771
FCLQL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR LK
Sbjct: 703 FCLQLDEDVNEVHFALKSESCIEDSCFSEASLKLHKLLEFKHPEIGQNIINATKKIRHLK 762
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432402|ref|XP_004133988.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] gi|449517108|ref|XP_004165588.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1013 bits (2618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/760 (67%), Positives = 605/760 (79%), Gaps = 10/760 (1%)
Query: 13 SSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQI 72
+ A ++LQTLGDFTSKENWD FFTIRG GD+FEWYAEWP+L+DPLIS + + SP PQI
Sbjct: 2 AKADNILQTLGDFTSKENWDNFFTIRGHGDAFEWYAEWPELKDPLISHLPTLSKSPSPQI 61
Query: 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMD 132
LVPGCGNS LSE LYDAGF ITN+DFSKV ISDMLRRNVR+R DMRWRVMDMT+MQF +
Sbjct: 62 LVPGCGNSSLSEQLYDAGFRCITNIDFSKVAISDMLRRNVRERPDMRWRVMDMTNMQFTN 121
Query: 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192
+TFD ++DKGGLDALMEPE+G KLG+QYLSEVKR+LK GGKF+CLTLAESHVLGLLFPKF
Sbjct: 122 DTFDAVVDKGGLDALMEPEVGSKLGSQYLSEVKRVLKPGGKFICLTLAESHVLGLLFPKF 181
Query: 193 RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 252
RFGWKMS+H IP K S+PS +TFMVV +K+ S+ Q+ SS + SSLD +Q + +
Sbjct: 182 RFGWKMSIHVIPPKPPSKPSFRTFMVVVEKDESTAWHQIESSLNFSSLDSRGDQTRELVQ 241
Query: 253 ALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVL 312
+LE+EN+ R +YS G D+L+SLEDLQLGAKGD++ L G R + LGG+G FSYRAVL
Sbjct: 242 SLENENRIREKYSSGDDLLFSLEDLQLGAKGDLQKLHRGRRVQFTLGGQGTSIFSYRAVL 301
Query: 313 LDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS 372
LDARE+SGPF Y CGVFIVPKTRAHEWLFSSEEGQW+VVESSKAARLIMVLLD + + A+
Sbjct: 302 LDAREHSGPFSYECGVFIVPKTRAHEWLFSSEEGQWMVVESSKAARLIMVLLDETQSGAN 361
Query: 373 MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYE 432
MD IQKDLSPLVKQLAPG+DD G+QIPFMMA DGIK RN V Q TSSLTG I+VED+ YE
Sbjct: 362 MDAIQKDLSPLVKQLAPGEDDSGSQIPFMMASDGIKERNCVFQGTSSLTGSIVVEDVKYE 421
Query: 433 NVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSK 492
+V + SRI+PS DL FRRLVFQRT+ LVQSEALL R+ + + +RKK+ +SSKSK
Sbjct: 422 HVSGDASRIFPSGDLIFRRLVFQRTESLVQSEALLTRERVDDKVSGQMDRKKSHASSKSK 481
Query: 493 RKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGA 552
KG +R + +S +Q+K YHGYLASSYH GIISGF LIS YL SVAS GK V AVVIGLGA
Sbjct: 482 NKGKKRLNKESSDQMKAYHGYLASSYHSGIISGFMLISQYLGSVASAGKMVNAVVIGLGA 541
Query: 553 GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSA 612
GLLPMFL CM F+ IE VELD +LNLA DYF FT+D +LKVHI DGI+FVRE ++
Sbjct: 542 GLLPMFLRACMSFLHIEVVELDSMILNLARDYFDFTEDANLKVHIADGIQFVREFRNYGT 601
Query: 613 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFL 672
+G+ + +N S N +VDILIIDVD+ DSSSGMTCPAADFVE SFL
Sbjct: 602 -------NGSTVALDNGNSS--QVEQGNKKVDILIIDVDATDSSSGMTCPAADFVEESFL 652
Query: 673 LTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSESC 732
L VKDALSEQGLFI+NLV+RS +MV++RMK VFNHLF LQLEEDVN VLF L S+ C
Sbjct: 653 LAVKDALSEQGLFIINLVTRSPTVNNMVVTRMKGVFNHLFSLQLEEDVNEVLFALPSDLC 712
Query: 733 IK-DNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 771
IK D+ F EA++QL KL+ +HLE+ QSI+DA KIRCLK
Sbjct: 713 IKEDHLFNEASLQLEKLLNLKHLEMRQSIVDATTKIRCLK 752
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|34148076|gb|AAQ62585.1| putative spermine/spermidine synthase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/778 (65%), Positives = 605/778 (77%), Gaps = 22/778 (2%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWD FFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKAKKKGSPE----DILETLGDFTSKENWDNFFTLRG--DSFEWYAEWPHLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVI DMLRRNVRDR MRW
Sbjct: 55 LKTIPLPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVIGDMLRRNVRDRPLMRW 114
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
RVMDMT MQF DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 115 RVMDMTVMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 174
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 175 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 234
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
N Q G+HEAL++ENQ R +YS GSDILYS+EDLQ ++ LS G R +L LGG
Sbjct: 235 HSNSKQVSGLHEALQNENQIREKYSSGSDILYSVEDLQ----EELTKLSQGRRLQLTLGG 290
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SSKAARLI
Sbjct: 291 QGYSTFSYRAVILDAEEQADPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSKAARLI 350
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MV LD SH+ SM+EIQKDLSPLV QLAP ++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 351 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENGNGAKIPFMMASEGIKERNIIHKVTSSL 410
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + + ET
Sbjct: 411 TGSIIVEDVIYENVDSEVSCIFPSGELMFRRLVFERAANLVQSEALLKDEQLPTKLVSET 470
Query: 481 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 540
+KK ++SSKS++ G+ R S + +QL VYHGY+ASSYH GIISGF LISS++E+VAS G
Sbjct: 471 GKKKTNASSKSRKSGSWRDSVGASSQLTVYHGYVASSYHTGIISGFMLISSHMENVASSG 530
Query: 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG 600
K VKAV+IGLGAGLLPMFLH C+PF+ IE VELD ++++A DYF F +DK +KVHI DG
Sbjct: 531 KMVKAVIIGLGAGLLPMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKHVKVHIADG 590
Query: 601 IKFVREMKSSSATDEMSVVHG--NEITSNNTRSCNGNCTASNA-----RVDILIIDVDSP 653
I+FVRE+ SS A +HG N+ + +T + N + S+A +VDI+I+DVDS
Sbjct: 591 IQFVREIDSSGAAQ----IHGKSNDPSYTDT-ALNASSAVSHADVEVTKVDIIIVDVDSS 645
Query: 654 DSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFC 713
D SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+HLFC
Sbjct: 646 DPSSGLTCPAPDFLDESFLETVKDRLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSHLFC 705
Query: 714 LQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 771
LQL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR LK
Sbjct: 706 LQLDEDVNEVHFALKSESCIEDSCFSEASLKLDKLLEFKHPEIGQNIINATKKIRRLK 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525225|ref|XP_003531227.1| PREDICTED: methyltransferase-like protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/775 (65%), Positives = 603/775 (77%), Gaps = 22/775 (2%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWD FFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKAKKKGSPE----DILETLGDFTSKENWDNFFTLRG--DSFEWYAEWPHLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVI DMLRRNVRDR MRW
Sbjct: 55 LKTIPLPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVIGDMLRRNVRDRPLMRW 114
Query: 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
RVMDMT MQF DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTLA
Sbjct: 115 RVMDMTVMQFEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTLA 174
Query: 181 ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSL 240
ESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SSL
Sbjct: 175 ESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSSL 234
Query: 241 DCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGG 300
N Q G+HEAL++ENQ R +YS GSDILYS+EDLQ ++ LS G R +L LGG
Sbjct: 235 HSNSKQVSGLHEALQNENQIREKYSSGSDILYSVEDLQ----EELTKLSQGRRLQLTLGG 290
Query: 301 EGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLI 360
+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SSKAARLI
Sbjct: 291 QGYSTFSYRAVILDAEEQADPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSKAARLI 350
Query: 361 MVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSL 420
MV LD SH+ SM+EIQKDLSPLV QLAP ++ GA+IPFMMA +GIK RN++H+ TSSL
Sbjct: 351 MVYLDASHSDTSMEEIQKDLSPLVTQLAPAENGNGAKIPFMMASEGIKERNIIHKVTSSL 410
Query: 421 TGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVET 480
TG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + + ET
Sbjct: 411 TGSIIVEDVIYENVDSEVSCIFPSGELMFRRLVFERAANLVQSEALLKDEQLPTKLVSET 470
Query: 481 ERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVG 540
+KK ++SSKS++ G+ R S + +QL VYHGY+ASSYH GIISGF LISS++E+VAS G
Sbjct: 471 GKKKNNASSKSRKSGSWRDSVGASSQLTVYHGYVASSYHTGIISGFMLISSHMENVASSG 530
Query: 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG 600
K VKAV+IGLGAGLLPMFLH C+PF+ IE VELD ++++A DYF F +DK +KVHI DG
Sbjct: 531 KMVKAVIIGLGAGLLPMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKHVKVHIADG 590
Query: 601 IKFVREMKSSSATDEMSVVHG--NEITSNNTRSCNGNCTASNA-----RVDILIIDVDSP 653
I+FVRE+ SS A +HG N+ + +T + N + S+A +VDI+I+DVDS
Sbjct: 591 IQFVREIDSSGAAQ----IHGKSNDPSYTDT-ALNASSAVSHADVEVTKVDIIIVDVDSS 645
Query: 654 DSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFC 713
D SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+HLFC
Sbjct: 646 DPSSGLTCPAPDFLDESFLETVKDRLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSHLFC 705
Query: 714 LQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIR 768
LQL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR
Sbjct: 706 LQLDEDVNEVHFALKSESCIEDSCFSEASLKLDKLLEFKHPEIGQNIINATKKIR 760
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205206|emb|CBI17265.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/805 (65%), Positives = 608/805 (75%), Gaps = 91/805 (11%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
M KKK+++ +LLQTLGDFTSKENWDKFFTIRG DSFEWYAEWPQL+DPL+S
Sbjct: 1 MSKKKQSEE-------ELLQTLGDFTSKENWDKFFTIRGSDDSFEWYAEWPQLKDPLLSH 53
Query: 61 IG--APTSSPPP----------QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108
+ AP S P QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML
Sbjct: 54 LSSTAPPSDPASEPPQPPPPPLQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 113
Query: 109 RRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL 168
RRNVR R DMRWRVMD+TSMQF D +FD ILDKGGLDALMEPELG KLG YL+EVKR+L
Sbjct: 114 RRNVRSRPDMRWRVMDITSMQFPDGSFDAILDKGGLDALMEPELGPKLGKMYLTEVKRVL 173
Query: 169 KSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVV 228
KSGGKF+ LTLAESHVLGLLF KFRFGWKMS+H + QK S++PSL TFMVVA+KE+S+V+
Sbjct: 174 KSGGKFIGLTLAESHVLGLLFSKFRFGWKMSIHVVSQKPSNKPSLLTFMVVAEKESSTVL 233
Query: 229 LQVTSSFDHSSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNL 288
Q+T+SF SSLD N NQA G++EA+E+EN+ RREYS+GSD++YSLEDLQLGAKGD+
Sbjct: 234 HQITTSFARSSLDLNGNQARGLYEAIENENRIRREYSNGSDLIYSLEDLQLGAKGDLF-- 291
Query: 289 SPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQW 348
+TRAHEWLFSSEEGQW
Sbjct: 292 --------------------------------------------QTRAHEWLFSSEEGQW 307
Query: 349 LVVESSKAARLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIK 408
+VVESSKAARLIMVLLDTSH +ASMD+IQKDLSPLVK+LAP ++ GAQIPFM+AGDGIK
Sbjct: 308 MVVESSKAARLIMVLLDTSHTNASMDDIQKDLSPLVKRLAPANNNTGAQIPFMIAGDGIK 367
Query: 409 HRNVVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLM 468
R +VHQ TS+LTG I VED+VYENVD + S + PS+ L FRRL FQR +GLVQSEALL
Sbjct: 368 QRKIVHQVTSTLTGLITVEDVVYENVDGKVSHLVPSKALLFRRLTFQRAEGLVQSEALLT 427
Query: 469 RDGSSHRTDVETERKKASSSSKSKRKGTQRRSDD-----SGNQLKVYHGYLASSYHMGII 523
R+G + + ETERKK+ SSSKS++KG Q++ D S N LKVYH YLASSYHMGII
Sbjct: 428 REGGTQKIVSETERKKSISSSKSRKKGNQKKIDSLAIHGSSNNLKVYHNYLASSYHMGII 487
Query: 524 SGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583
SGF LISSYLESVAS G++VKAVVIGLGAGLLPMFLH CMPF+ IE VELD +LNLA +
Sbjct: 488 SGFMLISSYLESVASTGRTVKAVVIGLGAGLLPMFLHGCMPFLDIEVVELDPVILNLARN 547
Query: 584 YFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTR--SCNGNCTASNA 641
YFGF +DK LKVHI DGI+FVR + A D +S H N + S NG+CTAS+A
Sbjct: 548 YFGFCEDKHLKVHIADGIQFVRGV----AADGVSGKHVNNDAQCDAECPSSNGSCTASHA 603
Query: 642 ------RVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695
+ DILIIDVDS DSSSGMTCPAADFV+ SFLLTVKD+LS+QGLF+VNLVSRS+A
Sbjct: 604 ERKVISKFDILIIDVDSSDSSSGMTCPAADFVDESFLLTVKDSLSDQGLFVVNLVSRSRA 663
Query: 696 TKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLV------ 749
K+MV+SRMK VF+HLFCLQLEEDVN VLF L +E CIK+ F EAAV+L KL+
Sbjct: 664 IKNMVVSRMKAVFSHLFCLQLEEDVNEVLFALRTEDCIKEEQFGEAAVELEKLLSWDRND 723
Query: 750 ---KFQHLEISQSIMDAAKKIRCLK 771
K + E+SQ I D+ +KI+CLK
Sbjct: 724 LPEKSKPPEMSQIIRDSTEKIKCLK 748
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826625|ref|XP_002881195.1| hypothetical protein ARALYDRAFT_902209 [Arabidopsis lyrata subsp. lyrata] gi|297327034|gb|EFH57454.1| hypothetical protein ARALYDRAFT_902209 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/781 (63%), Positives = 604/781 (77%), Gaps = 29/781 (3%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGKKK N++++SS D LQTL DFTSKENWDKFFT+RG DSFEWYAEWPQLRD L+ L
Sbjct: 1 MGKKKGNKAAASSD--DFLQTLEDFTSKENWDKFFTLRGNDDSFEWYAEWPQLRDSLLPL 58
Query: 61 IGAPTSSPPP---QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD 117
+ +SS QILVPGCGNSRLSEHLYDAGF ITNVDFSKVVISDMLRRN+R R +
Sbjct: 59 LQDSSSSSSSGSLQILVPGCGNSRLSEHLYDAGFRDITNVDFSKVVISDMLRRNIRTRPE 118
Query: 118 MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177
+RWRVMD+T MQ DE+FD +LDKG LDALMEPE+G KLGNQYLSE KR+LK GGKF+CL
Sbjct: 119 LRWRVMDITKMQLADESFDTVLDKGALDALMEPEVGTKLGNQYLSEAKRVLKPGGKFICL 178
Query: 178 TLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDH 237
TLAESHVL LLF +FRFGWKM+VH+I QK S+ L+TFMVVA+KENS ++ ++TS+FD
Sbjct: 179 TLAESHVLALLFSRFRFGWKMNVHSIAQKRSN---LKTFMVVAEKENSVLLHEITSAFDL 235
Query: 238 SSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELI 297
SL N +Q G+ EALESENQ RR+ ++GSD+LYS EDL+LG KGD+ L+ G R +
Sbjct: 236 LSLGRNDSQGSGMCEALESENQIRRDCNNGSDLLYSHEDLKLGIKGDLAALTGGRRIKFT 295
Query: 298 LGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAA 357
LGG+G FSYRAVLLDA+ + PF+Y+CGVF+VPKTRAHEWLF SEEGQW VVESS+AA
Sbjct: 296 LGGQGS-NFSYRAVLLDAQRQTEPFVYHCGVFLVPKTRAHEWLFCSEEGQWQVVESSQAA 354
Query: 358 RLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQAT 417
RLIMV LD+SH+ A+M++IQ DLSP+V QLAP DD+ A+IP+MMA DGIK R+ VH+ T
Sbjct: 355 RLIMVFLDSSHSGATMEDIQNDLSPMVTQLAPRNDDEEARIPYMMASDGIKKRDTVHEVT 414
Query: 418 SSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTD 477
SSLTG ++VED+VYE+ + PS DL FRRLVF+RT+GL+QSEALL+ DG
Sbjct: 415 SSLTGEVVVEDVVYESAPSNLEDLSPSSDLAFRRLVFKRTEGLIQSEALLVEDGEILE-- 472
Query: 478 VETERKKASSSSKSKRKGTQRRSDDSGNQL-KVYHGYLASSYHMGIISGFTLISSYLESV 536
+++++K S+SKRKG ++++ + L +V H YLASSYH GIISGFTL+SSYL+
Sbjct: 473 -QSQKEKTKDVSQSKRKGNKKQNQEPSKPLMRVSHDYLASSYHTGIISGFTLVSSYLKKA 531
Query: 537 ASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH 596
S G VK VVIGLGAGLLPMFLH C+PF IEAVELD MLN+ +DYFGFT + LKVH
Sbjct: 532 ESCGTMVKTVVIGLGAGLLPMFLHGCLPFFSIEAVELDPVMLNVGKDYFGFTHNDRLKVH 591
Query: 597 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNAR----VDILIIDVDS 652
I DGIKF+R++ +S A+ +E TSN NG+ TA N + DILIIDVDS
Sbjct: 592 IADGIKFIRDITNSEAS--------SEETSNG--GSNGDSTAHNTQGGTCPDILIIDVDS 641
Query: 653 PDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLF 712
DSS G+TCPA+DF+E +FLL+VK AL + GLF+VNLVSRSQ+ KDMV++RMK VF+HLF
Sbjct: 642 ADSSGGLTCPASDFIEETFLLSVKRALPQHGLFVVNLVSRSQSVKDMVVARMKKVFDHLF 701
Query: 713 CLQLEE--DVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCL 770
LQLEE DVN+VLFGL SES I +N PE+AV L L+K Q LE QSI+DA KK++C
Sbjct: 702 GLQLEEEDDVNVVLFGLCSESVISENDIPESAVILEGLLKCQRLETKQSIIDATKKLKCW 761
Query: 771 K 771
K
Sbjct: 762 K 762
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 771 | ||||||
| TAIR|locus:2045253 | 760 | AT2G31740 [Arabidopsis thalian | 0.976 | 0.990 | 0.606 | 5.6e-242 | |
| MGI|MGI:1918699 | 698 | Mettl13 "methyltransferase lik | 0.504 | 0.557 | 0.346 | 1.2e-85 | |
| UNIPROTKB|F1PDJ6 | 699 | METTL13 "Uncharacterized prote | 0.499 | 0.550 | 0.349 | 1e-83 | |
| UNIPROTKB|A5PK19 | 699 | METTL13 "Methyltransferase-lik | 0.499 | 0.550 | 0.351 | 1.5e-82 | |
| RGD|1311526 | 700 | Mettl13 "methyltransferase lik | 0.505 | 0.557 | 0.346 | 1.6e-82 | |
| UNIPROTKB|F1S7S8 | 699 | METTL13 "Uncharacterized prote | 0.499 | 0.550 | 0.349 | 4.8e-82 | |
| UNIPROTKB|B4E2X3 | 698 | METTL13 "cDNA FLJ56024" [Homo | 0.499 | 0.551 | 0.346 | 5.8e-80 | |
| UNIPROTKB|Q8N6R0 | 699 | METTL13 "Methyltransferase-lik | 0.499 | 0.550 | 0.346 | 6.6e-80 | |
| UNIPROTKB|F1PCU5 | 608 | F1PCU5 "Uncharacterized protei | 0.499 | 0.633 | 0.349 | 2.8e-75 | |
| FB|FBgn0032873 | 673 | CG2614 [Drosophila melanogaste | 0.259 | 0.297 | 0.375 | 2.2e-62 |
| TAIR|locus:2045253 AT2G31740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2332 (826.0 bits), Expect = 5.6e-242, P = 5.6e-242
Identities = 472/778 (60%), Positives = 584/778 (75%)
Query: 1 MGKKKKNQXXXXXXATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGKKK N+ D LQTL DFTSKENWDKFFT+RG DSFEWYAEWPQL D L+ L
Sbjct: 1 MGKKKGNKAAASTD--DFLQTLEDFTSKENWDKFFTLRGNDDSFEWYAEWPQLHDSLLPL 58
Query: 61 I--GAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM 118
+ + +SS QILVPGCGNSRL+EHLYDAGF ITNVDFSKVVISDMLRRN+R R ++
Sbjct: 59 LQDSSSSSSDSLQILVPGCGNSRLTEHLYDAGFRDITNVDFSKVVISDMLRRNIRTRPEL 118
Query: 119 RWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
RWRVMD+T MQ DE+FD +LDKG LDALMEPE+G KLGNQYLSE KR+LK GGKF+CLT
Sbjct: 119 RWRVMDITKMQLADESFDTVLDKGALDALMEPEVGTKLGNQYLSEAKRVLKPGGKFICLT 178
Query: 179 LAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHS 238
LAESHVL LLF +FRFGWKM+VH+I QK S L+T+MVVA+KENS ++ ++TS+F+
Sbjct: 179 LAESHVLALLFSRFRFGWKMNVHSIAQKRSK---LKTYMVVAEKENSVLLHEITSAFELV 235
Query: 239 SLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELIL 298
SL N +Q G+ EA+ESEN+ RR+ ++GSD+LYS EDL+LG KGD+ L+ G R + L
Sbjct: 236 SLGRNDSQGSGMREAVESENKIRRDCNNGSDLLYSHEDLKLGIKGDLAELTEGRRIKFTL 295
Query: 299 GGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAAR 358
GG+G FSYRAVLLDA++ + PF+Y CGVF+VPKTRAHEWLF SEEGQW VVESS+AAR
Sbjct: 296 GGQGSN-FSYRAVLLDAQKQTEPFVYYCGVFLVPKTRAHEWLFCSEEGQWQVVESSQAAR 354
Query: 359 LIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATS 418
LIMV LD+SH+ A+M++IQ DLSP+V QLAP DD+ A+IP+MMA DGIK R+ VH+ TS
Sbjct: 355 LIMVFLDSSHSGATMEDIQNDLSPMVTQLAPRNDDE-ARIPYMMASDGIKKRDTVHEVTS 413
Query: 419 SLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDV 478
+TG ++VED+VYE+ + S DL FRRLVF+RT+GL+QSEALL+ DG
Sbjct: 414 PMTGKVVVEDVVYESAPSNLEDLSTSSDLAFRRLVFKRTEGLIQSEALLVEDGEILE--- 470
Query: 479 ETEXXXXXXXXXXXXXGTQRRSDDSGNQL-KVYHGYLASSYHMGIISGFTLISSYLEXXX 537
+++ G ++++ + L +V H YLASSYH GIISGFTL+SSYL+
Sbjct: 471 QSQKEKTKNVSQSKRKGNKKQNQEPSRPLMRVSHDYLASSYHTGIISGFTLVSSYLKKAE 530
Query: 538 XXXXXXXXXXIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI 597
IGLGAGLLPMFLH C+PF IEAVELD ML++ +DYFGFTQ+ LKVHI
Sbjct: 531 SCGTMVKTVVIGLGAGLLPMFLHGCLPFFSIEAVELDPVMLSVGKDYFGFTQNDRLKVHI 590
Query: 598 TDGIKFVREMKSSSAT-DEMSVVHGN-EITSNNTRSCNGNCTASNARVDILIIDVDSPDS 655
DGIKF+R++ +S A+ +E S + N + T++NT+ G C DILIIDVDS DS
Sbjct: 591 ADGIKFIRDITNSEASSEESSNIGSNGDSTTHNTQG--GICP------DILIIDVDSADS 642
Query: 656 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 715
S G+TCPA+DF+E +FLL+VK AL + GLFIVNLV+RSQ+ KDMV+SRMK VF+HLF LQ
Sbjct: 643 SGGLTCPASDFIEETFLLSVKQALPQHGLFIVNLVTRSQSVKDMVVSRMKKVFDHLFGLQ 702
Query: 716 LEE--DVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 771
LEE DVN+VLFGL SES I +N PE+AV L L+K Q LE QSI+DA KK++C K
Sbjct: 703 LEEEDDVNVVLFGLCSESVISENDIPESAVILEGLLKCQRLETKQSIIDATKKLKCWK 760
|
|
| MGI|MGI:1918699 Mettl13 "methyltransferase like 13" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 1.2e-85, Sum P(3) = 1.2e-85
Identities = 145/419 (34%), Positives = 213/419 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQQRG-KTAFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT ++F D TF V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLEFPDATFQVVLDKGT 123
Query: 144 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E E+ + ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 124 LDAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRA 183
Query: 201 HAIPQK----SSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + S +EP SL F V K V F+ C + Q + L
Sbjct: 184 HQVASSQDRVSEAEPRFSLPVFAFVMTKFRP-VPGSALQIFEL----CTQEQGKPVR--L 236
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
ES +Q Y+ QL K + ++S +L G G+ ++ V
Sbjct: 237 ESADQLAEAVRERQ--YYAWLCSQLRRKAGLGSVS----LDLCSGDTGEPRYTLHVVDNP 290
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
A + S + +FI+P+ R EWLF EEG+ + S+ RL+ V L A M+
Sbjct: 291 AVKPSRDNHF--AIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLVTVALHRGQRYAGME 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYEN 433
IQ +LS V +LAP Q+PF+ G I R V HQ S+L+G ++ED+ E+
Sbjct: 349 SIQAELSARVMELAPAGLPPQQQVPFLSVGGDIGVRTVQHQDHSALSGDYVIEDVQGED 407
|
|
| UNIPROTKB|F1PDJ6 METTL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 1.0e-83, Sum P(3) = 1.0e-83
Identities = 145/415 (34%), Positives = 208/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
DF S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 DFGSVDYWEKFFQQRG-KKAFEWYGSYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 184 HQVANSQDQVLEAEPRFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQGKPVRLESAEQL 242
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
+ R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCDGDTGEPRYTLHVV--D 288
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF EEG+ + ++ RLI V L MD
Sbjct: 289 SPTVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAATAGFRRLITVALHRGQQYEGMD 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G +VED+
Sbjct: 349 SIQAELSARVMELAPAGMPSQQQVPFLSVGGDIGVRTVQHQNCSPLSGSYVVEDV 403
|
|
| UNIPROTKB|A5PK19 METTL13 "Methyltransferase-like protein 13" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 1.5e-82, Sum P(3) = 1.5e-82
Identities = 146/415 (35%), Positives = 209/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVVGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++HVL F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 184 HQVASSQDQLLEAEPRFSLPVFAFIMTKFRP-VTGSALQIFELCAQEQGKPVRLESAEQL 242
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
+ R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCNGDTGEPRYTLHVV--D 288
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF EEG+ + S+ RLI V L MD
Sbjct: 289 SPTVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQQYEGMD 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQA S L+G ++ED+
Sbjct: 349 SIQAELSARVMELAPAGMPAQLQVPFLSVGGDIGVRIVQHQACSPLSGDYVIEDV 403
|
|
| RGD|1311526 Mettl13 "methyltransferase like 13" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 1.6e-82, Sum P(3) = 1.6e-82
Identities = 145/419 (34%), Positives = 214/419 (51%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQHRG-KKTFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+F D TF V+LDKG
Sbjct: 64 EQLYDVGYQDIMNIDISEVVIKQMKERNGSRRPHMSFLKMDMTHMEFPDATFQVVLDKGT 123
Query: 144 LDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E E + ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q S +EP SL F V K V F+ C + Q + L
Sbjct: 184 HQVTNSQDQVSEAEPRFSLPVFAFVMTKFRP-VPGSALQIFEL----CTQEQGKPVR--L 236
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
ES ++ + L+ A G + ++S +L G G+ ++ V
Sbjct: 237 ESADRLAEAVRERQHYAWLCSQLRRKAAG-LGSVS----LDLCSGDTGEPRYTLHVVDNP 291
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
A + S + +FI+P+ R EWLF EEG+ + S+ RL+ V L SM+
Sbjct: 292 AVKPSRDNHF--AIFIIPQGRETEWLFGMEEGRKQLASSAGFRRLVTVALHRGQRYDSME 349
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYEN 433
IQ +LS V +LAP Q+PF+ G I R V +A S+L+G ++ED+ E+
Sbjct: 350 SIQAELSARVMELAPAGMPPKQQVPFLSVGGDIGVRTVQQRAHSALSGDYVIEDVQGED 408
|
|
| UNIPROTKB|F1S7S8 METTL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 4.8e-82, Sum P(3) = 4.8e-82
Identities = 145/415 (34%), Positives = 208/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R + + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQLSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++HVL F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q SEP SL F + K V F+ + + K E L
Sbjct: 184 HQVANSQDQLLDSEPRFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQGKPVRLESAERL 242
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
+ R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCNGDTGEPRYTLHVV--D 288
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF EEG+ + S+ RLI V L MD
Sbjct: 289 SPTVKASRDSHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQQYEGMD 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+
Sbjct: 349 SIQAELSARVMELAPAGMPAQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV 403
|
|
| UNIPROTKB|B4E2X3 METTL13 "cDNA FLJ56024" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 5.8e-80, Sum P(3) = 5.8e-80
Identities = 144/415 (34%), Positives = 208/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 9 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 62
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M N R M + MDMT M+F D +F V+LDKG
Sbjct: 63 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 122
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 123 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 182
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 183 HQVANSQDQVLEAEPQFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQRKPVRLESAERL 241
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
Q R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 242 AEAVQERQQYAW----LCS----QLRRKARLGSVS----LDLCDGDTGEPRYTLHVV--D 287
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF +EG+ + S+ RLI V L SMD
Sbjct: 288 SPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMD 347
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+
Sbjct: 348 HIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV 402
|
|
| UNIPROTKB|Q8N6R0 METTL13 "Methyltransferase-like protein 13" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 6.6e-80, Sum P(3) = 6.6e-80
Identities = 144/415 (34%), Positives = 208/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M N R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 184 HQVANSQDQVLEAEPQFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQRKPVRLESAERL 242
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
Q R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVQERQQYAW----LCS----QLRRKARLGSVS----LDLCDGDTGEPRYTLHVV--D 288
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF +EG+ + S+ RLI V L SMD
Sbjct: 289 SPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMD 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+
Sbjct: 349 HIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV 403
|
|
| UNIPROTKB|F1PCU5 F1PCU5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 2.8e-75, Sum P(3) = 2.8e-75
Identities = 145/415 (34%), Positives = 208/415 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
DF S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 DFGSVDYWEKFFQQRG-KKAFEWYGSYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQMEFPDASFQVVLDKGT 123
Query: 144 LDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW + V
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRV 183
Query: 201 HAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEAL 254
H + Q +EP SL F + K V F+ + + K E L
Sbjct: 184 HQVANSQDQVLEAEPRFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQGKPVRLESAERL 242
Query: 255 ESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLD 314
+ R++Y+ L S QL K + ++S +L G G+ ++ V D
Sbjct: 243 AEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCDGDTGEPRYTLHVV--D 288
Query: 315 ARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMD 374
+ + +FI+P+ R EWLF EEG+ + ++ RLI V L MD
Sbjct: 289 SPTVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAATAGFRRLITVALHRGQQYEGMD 348
Query: 375 EIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 429
IQ +LS V +LAP Q+PF+ G I R V HQ S L+G +VED+
Sbjct: 349 SIQAELSARVMELAPAGMPSQQQVPFLSVGGDIGVRTVQHQNCSPLSGSYVVEDV 403
|
|
| FB|FBgn0032873 CG2614 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 2.2e-62, Sum P(4) = 2.2e-62
Identities = 83/221 (37%), Positives = 125/221 (56%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ +L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLELCDQIHKYI-----KPADRILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDV 137
GNS+LS +YD GF ITN+D S + + ML N + R +M++ MD T+M F DE+F V
Sbjct: 58 GNSKLSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKFLQMDATAMTFPDESFSV 117
Query: 138 ILDKGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLF---PK 191
LDKG LDAL EPE + N Y E+ R +++GG++V ++L + H+L L PK
Sbjct: 118 SLDKGTLDALFADDEPETRAVVEN-YFKEILRTMRNGGRYVGISLLQEHILNFLLDFLPK 176
Query: 192 FRFGWKMSVHAI------PQKSSSEP-SLQTFMVVADKENS 225
++ VH + +K++ + +L F+VVA K S
Sbjct: 177 HNCMLRI-VHCLGVEQANKEKNADDALTLPVFVVVATKFKS 216
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| A5PK19 | MET13_BOVIN | 2, ., 1, ., 1, ., - | 0.3287 | 0.8184 | 0.9027 | yes | no |
| Q91YR5 | MET13_MOUSE | 2, ., 1, ., 1, ., - | 0.3227 | 0.8054 | 0.8896 | yes | no |
| A5WVX1 | MET13_DANRE | 2, ., 1, ., 1, ., - | 0.3039 | 0.8456 | 0.9449 | yes | no |
| Q8N6R0 | MET13_HUMAN | 2, ., 1, ., 1, ., - | 0.3291 | 0.8132 | 0.8969 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 771 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-14 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 8e-10 | |
| COG0421 | 282 | COG0421, SpeE, Spermidine synthase [Amino acid tra | 2e-09 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 4e-08 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-07 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-07 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-05 | |
| PRK04457 | 262 | PRK04457, PRK04457, spermidine synthase; Provision | 3e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-04 | |
| PRK00811 | 283 | PRK00811, PRK00811, spermidine synthase; Provision | 5e-04 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 0.002 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.002 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 7e-14
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135
GCG L+E L G +T VD S +ML R R+ ++ V D + F DE+F
Sbjct: 4 GCGTGLLAEALARRGGARVTGVDLSP----EMLAL-ARKRAPRKFVVGDAEDLPFPDESF 58
Query: 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
DV++ L L +PE + L E+ R+LK GGK V
Sbjct: 59 DVVVSSLVLHHLPDPE-------RALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 8e-10
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 72 ILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQF 130
+L GCG L+ L +T VD S V + + +D + D +
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 131 M-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
DE+FDVI+ D + + ++L E +RLLK GG V
Sbjct: 62 EADESFDVII----SDPPLHHLVEDLA--RFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 50/176 (28%)
Query: 544 KAVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFT----QDKSLKVH 596
+ ++IG G G L E + P I VE+D ++ LA Y D +++
Sbjct: 79 RVLIIGGGDGGT---LREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII 135
Query: 597 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS 656
I DG++F+R+ + D++I+D P
Sbjct: 136 IDDGVEFLRD--------------------------------CEEKFDVIIVDSTDPVG- 162
Query: 657 SGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLF 712
PA F + AL E G+F+ + S +D I+ + +F
Sbjct: 163 -----PAEALFTEEFYEGCRRALKEDGIFVAQ--AGSPFLQDEEIALAYRNVSRVF 211
|
Length = 282 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 22/131 (16%)
Query: 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNV 112
R LISL+G P ++L CG ++ L + G + +D S ML
Sbjct: 40 RRALISLLGIK---PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS----ESMLEVA- 91
Query: 113 RDR------SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR 166
R++ ++ + V D ++ F D +FD + GL + + + + L E+ R
Sbjct: 92 REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDID-------KALKEMYR 144
Query: 167 LLKSGGKFVCL 177
+LK GG+ + L
Sbjct: 145 VLKPGGRLLVL 155
|
Length = 238 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 72 ILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131
IL GCG R+ L AG +T VD SK + R +R+ V D + F
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60
Query: 132 DETFD-VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172
+ +FD VI LD L +L L E RLL+ GG
Sbjct: 61 EGSFDLVICAGLSLDYLSPKQLR-----ALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 66 SSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDR--SDMRWR 121
++L GCG L+ L + G + +D S+ I + N + ++ +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA-KENAKKLGYENVEFI 59
Query: 122 VMDMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
D+ + Q D +FDV++ L+ L +P+ + L E+ R+LK GG +
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHLPDPD-------KVLEEIIRVLKPGGVLIVSD 112
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126
P ++L GCG L+ L +T VD S ++ ++ R N + R +
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEML-ELARENAKLALGPRITFVQGD 59
Query: 127 SMQFMD--ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
+ +D E FD + GG L+E L + LLK GG+ V
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLE----------LLDALASLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|179854 PRK04457, PRK04457, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 541 KSVKAVV-IGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHI 597
+ ++ IGLG G L F++ +P AVE++ ++ +A ++F + +V
Sbjct: 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF-ELPENGERFEVIE 123
Query: 598 TDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIID-VDS---P 653
DG +++ + S+ D++++D D
Sbjct: 124 ADGAEYIAVHRHST--------------------------------DVILVDGFDGEGII 151
Query: 654 DSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFN-HLF 712
D F ++ALS G+F+VNL SR + D + R++ F +
Sbjct: 152 D----------ALCTQPFFDDCRNALSSDGIFVVNLWSRDKRY-DRYLERLESSFEGRVL 200
Query: 713 CLQLEEDVNLVLFGLSS 729
L E N+ +F S
Sbjct: 201 ELPAESHGNVAVFAFKS 217
|
Length = 262 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 19/122 (15%)
Query: 69 PPQILVPGCGNSRLSEHLYDAG----FHGITNVDFSKVVISDMLRRNV---RDRSDMRWR 121
++L PG G+ AG G V+ + RR + +R
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVG---VELDPEAA-ALARRRLALAGLAPRVRVV 56
Query: 122 VMDMTSM-QFMDETFDVILDKGG----LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
V D + + D +FD++L G +P+ L +++L+ RLLK GG V
Sbjct: 57 VGDARELLELPDGSFDLVL---GNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
Query: 177 LT 178
+T
Sbjct: 114 IT 115
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 31/121 (25%), Positives = 42/121 (34%), Gaps = 43/121 (35%)
Query: 571 VELDLTMLNLAEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 625
VE+D ++ + Y G D +++ I DGIKFV E T+
Sbjct: 106 VEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE------TEN---------- 149
Query: 626 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 685
D +II VDS D PA F K AL E G+F
Sbjct: 150 ----------------SFD-VII-VDSTDPVG----PAEGLFTKEFYENCKRALKEDGIF 187
Query: 686 I 686
+
Sbjct: 188 V 188
|
Length = 283 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRN 111
R + LIG ++L CG L+ L + +T VDFS S+ML
Sbjct: 28 RRRAVKLIGVF---KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS----SEMLE-V 79
Query: 112 VRDRS----DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRL 167
+ +S ++ + D ++ F D +FD + GL + + + L E+ R+
Sbjct: 80 AKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKA-------LREMYRV 132
Query: 168 LKSGGKFVCL 177
LK GG+ V L
Sbjct: 133 LKPGGRLVIL 142
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 76 GCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNVRDRSD----MRWRVMDMTSMQF 130
GCG L L +A T VD S + R +R V+D +
Sbjct: 4 GCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDP 63
Query: 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 174
+FDV++ L L +P L ++RLLK GG
Sbjct: 64 --GSFDVVVASNVLHHLADPR-------AVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 771 | |||
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 100.0 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.97 | |
| PLN02823 | 336 | spermine synthase | 99.91 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 99.9 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 99.89 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.87 | |
| PLN02366 | 308 | spermidine synthase | 99.86 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.82 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.78 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.76 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 99.73 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.72 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.7 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.69 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.65 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.62 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.62 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.61 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.58 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.58 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.58 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.57 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.55 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.54 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.52 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.51 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.5 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.5 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 99.5 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.5 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.5 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.48 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.48 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.48 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.47 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.46 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.45 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.45 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.44 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.43 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.42 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.42 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.4 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.4 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.4 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.39 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.38 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.38 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.38 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.37 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.37 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 99.36 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.35 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.33 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.33 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.32 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.32 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.32 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.32 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.31 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.31 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.29 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.29 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.28 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.26 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.26 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.26 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.25 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.25 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.25 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.25 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.24 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.23 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.23 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.23 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.23 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.22 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.22 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.21 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.21 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.2 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.2 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.2 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.18 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.18 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.17 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.17 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.16 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.16 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.16 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.15 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.14 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.14 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.13 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.11 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.11 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.11 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.09 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.09 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.09 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.09 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.08 | |
| PLN02476 | 278 | O-methyltransferase | 99.08 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.07 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.07 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.07 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.05 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.03 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.03 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.02 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.02 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.01 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.01 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.01 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.01 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.01 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.01 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.0 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.0 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.0 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.98 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.98 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.97 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.97 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.96 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.95 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.95 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.95 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.94 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.94 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.93 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.92 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.92 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.91 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.9 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.9 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.89 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.88 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.88 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.86 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.85 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.85 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.85 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.83 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.83 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.81 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.77 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.77 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.76 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.76 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.76 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.76 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.75 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.74 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.74 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.73 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.71 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.7 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.68 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.67 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.66 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.66 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.66 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.66 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.65 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.64 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.64 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.63 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.62 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.62 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.62 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.62 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.62 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.61 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.61 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.6 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.6 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.6 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.59 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.59 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.58 | |
| PLN02366 | 308 | spermidine synthase | 98.57 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.56 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.56 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.56 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.56 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.56 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.56 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.55 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.54 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.54 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.53 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.53 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.53 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.53 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.53 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.52 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.52 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.52 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.51 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.51 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.5 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.5 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.5 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.49 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.48 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 98.47 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.47 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.47 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.47 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.47 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.46 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.46 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.46 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.46 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.45 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.45 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.45 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.44 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.44 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.43 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.42 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.42 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.41 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.41 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.4 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.4 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.4 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.39 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.39 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.39 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.39 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.38 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.38 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.37 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.37 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.37 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.36 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.35 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.35 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.35 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.34 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.34 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.33 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.33 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.33 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.33 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.32 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.32 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.31 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.31 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.31 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.3 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.3 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.29 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.29 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.28 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.28 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.28 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.28 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.27 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.26 | |
| PLN02476 | 278 | O-methyltransferase | 98.26 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.25 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.24 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.23 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.23 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.23 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.22 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.22 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.21 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.21 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.21 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.2 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.19 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.18 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.18 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.18 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.18 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.18 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.17 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.15 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.15 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.15 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.14 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.14 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.14 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.14 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.14 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.14 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.13 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.13 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.13 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.12 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.11 | |
| PLN02823 | 336 | spermine synthase | 98.09 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.09 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.09 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.08 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.08 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.06 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.05 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.05 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.05 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.04 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.03 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.03 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.02 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.0 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.0 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.99 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.99 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.99 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.98 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 97.97 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.97 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.96 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 97.95 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 97.94 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 97.9 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.9 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.88 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.88 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.87 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.87 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.87 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.85 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.85 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.85 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.85 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.84 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.84 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.84 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.83 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.83 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.81 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.8 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.8 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.79 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.79 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.79 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 97.78 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.78 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.77 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.77 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.76 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.76 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.75 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.75 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.74 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.73 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.72 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 97.72 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.72 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.7 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.7 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.69 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.68 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.67 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.66 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.65 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.64 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.63 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.62 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.62 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.61 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.61 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.6 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.57 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.52 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.52 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.52 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.51 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.51 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.51 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.5 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.5 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.49 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.48 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.47 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.46 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.45 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.44 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.44 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.44 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.4 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.37 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.35 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 97.35 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.35 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.33 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.3 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.29 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.29 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.27 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.26 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.26 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.23 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.21 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.21 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.21 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.19 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.14 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.12 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.11 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.1 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.1 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.1 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.09 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.08 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.07 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.06 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.05 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.05 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.04 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.03 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.03 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.02 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.98 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 96.97 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.96 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.93 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.92 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.85 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.83 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.82 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.74 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.74 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.72 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 96.65 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.61 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.58 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.58 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.56 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 96.54 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.51 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.46 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 96.43 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.36 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.34 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 96.34 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.27 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.27 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.24 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 96.21 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 96.09 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.02 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 95.98 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 95.97 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.9 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.89 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 95.85 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.81 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 95.8 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.79 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.78 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.72 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.67 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.67 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.57 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.45 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 95.39 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.3 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.26 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.2 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 95.19 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.05 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.03 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.01 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.01 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 94.96 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 94.96 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 94.92 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 94.9 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.81 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.71 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 94.66 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 94.63 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 94.55 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 94.36 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 94.36 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 94.31 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 94.22 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.15 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 94.14 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.1 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 94.1 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.03 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 93.99 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 93.98 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 93.97 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.78 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 93.77 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 93.7 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 93.69 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 93.6 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.52 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 93.5 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 93.45 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.37 |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=563.49 Aligned_cols=451 Identities=41% Similarity=0.648 Sum_probs=411.3
Q ss_pred hhhhccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCC-eEEEEcCCcchhHHHHHhcCCCeEEE
Q 004164 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPP-QILVPGCGNSRLSEHLYDAGFHGITN 96 (771)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~-~ILDiGCG~G~ls~~La~~g~~~V~~ 96 (771)
+|++...|.+..||++||..++ ..+++||+.|..++..+..++. +.. ++|.+|||++.++..+++.|+..|+.
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~ 76 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITN 76 (482)
T ss_pred CcccccccCcchhhhhhccccC-CChHHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCcee
Confidence 7889999999999999999986 7899999999999999999985 455 99999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchH---HHHHHHHHHHHccccCeE
Q 004164 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHK---LGNQYLSEVKRLLKSGGK 173 (771)
Q Consensus 97 vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~---~~~~~l~~i~rvLkpGG~ 173 (771)
+|+|+.+++.|..++....+.+.+..+|+..+.|++++||+|+++|++|++..++.... .+..++.+++|+|++||+
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE
Confidence 99999999999999887778999999999999999999999999999999998775543 478889999999999999
Q ss_pred EEEEEcCcchhhcchhhhhccCcEEEEeecCCCCCCCCCCccEEEEEEEcCCccccccccccccCcCcCCcchHHHHHHH
Q 004164 174 FVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 253 (771)
Q Consensus 174 ~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~ 253 (771)
++.+++.+
T Consensus 157 ~~svtl~~------------------------------------------------------------------------ 164 (482)
T KOG2352|consen 157 YISVTLVQ------------------------------------------------------------------------ 164 (482)
T ss_pred EEEEEeee------------------------------------------------------------------------
Confidence 99888774
Q ss_pred HHHHHHHHHHccCCCccchhhhhhhccccccccccCCCceEEEEeCCCCCceeeEEEEEEeCCCCCCCCcccEEEEEeeC
Q 004164 254 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPK 333 (771)
Q Consensus 254 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~y~~~v~D~~~~~~~~~~~~a~fiVP~ 333 (771)
+||+
T Consensus 165 ----------------------------------------------------------------------------~vp~ 168 (482)
T KOG2352|consen 165 ----------------------------------------------------------------------------VVPQ 168 (482)
T ss_pred ----------------------------------------------------------------------------eccC
Confidence 8999
Q ss_pred CCccccccCChhhhHHHHHhcCCCEEEEEEecCCCCCCc--hHHHHHhhhHHHHhcCCCCCCCCCCccEEeccCCceeee
Q 004164 334 TRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS--MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRN 411 (771)
Q Consensus 334 gre~ewlfst~~G~~~l~~sa~~~RLi~v~l~~~~~~~~--~~~v~~el~~~v~~l~p~~~~~~~~ip~l~~~~~~~~r~ 411 (771)
||+++|+|+++.|++++..+++..||++|.+++++.+.. +++++..+++.+..+.|+++++..+.|+++.|+++
T Consensus 169 ~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g~~~~~q~~~ls~g~d~---- 244 (482)
T KOG2352|consen 169 GRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQYSTPQEDEVQDPLSPFRRQLDPKGEPTQQQREILSIGEDV---- 244 (482)
T ss_pred CCCeeeeecCccchhhhhhhccCcceEEEEeccCccccchHHhhhccccccceeecccccCChhhhhccccccccc----
Confidence 999999999999999999999999999999999999998 89999999999999999999888899999877533
Q ss_pred EEEEEecCCccCEEEEEeecccCCCCcccCCCCCCceeeEEEecCCCCceeeeeEeeccCCCCCcchhhhhhhccccccc
Q 004164 412 VVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKS 491 (771)
Q Consensus 412 ~~~~~~s~~~g~~~Vedv~~e~~~~~~~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~ 491 (771)
..|||.+..|.|++|||++..
T Consensus 245 ------------------------------------~~~~l~~~~n~nv~q~~~k~~----------------------- 265 (482)
T KOG2352|consen 245 ------------------------------------GVRRLPPCGNMNVVQSEAKKD----------------------- 265 (482)
T ss_pred ------------------------------------ccccccCCCCcceecCchhcc-----------------------
Confidence 356677777999999996110
Q ss_pred cccCcccCCCCCCCceeecCCccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEE
Q 004164 492 KRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAV 571 (771)
Q Consensus 492 ~~~~~~~~~~~~~~~~~vd~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~V 571 (771)
...||+|+||+.|++|++|+..... ...+...++||+|+|||.|++||+.++|..++++|
T Consensus 266 ------------------r~~~l~s~~h~~m~~g~aL~~n~~~--~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~v 325 (482)
T KOG2352|consen 266 ------------------RKPELASQYHQMMIGGLALIMNRPP--QKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAV 325 (482)
T ss_pred ------------------cCcccCcchhhhhhccceeccccCc--hhccccCcEEEEecCCCccccceeeecCccceeEE
Confidence 1228999999999999999876553 23467789999999999999999999999999999
Q ss_pred EcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCC
Q 004164 572 ELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD 651 (771)
Q Consensus 572 EiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~ 651 (771)
|+||.|+++|++||||.++.|.+||+.||++|+++..+.. .++.+||+|++|+|
T Consensus 326 e~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~--------------------------~~~~~~dvl~~dvd 379 (482)
T KOG2352|consen 326 EIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQ--------------------------QEDICPDVLMVDVD 379 (482)
T ss_pred EEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhcc--------------------------ccccCCcEEEEECC
Confidence 9999999999999999988899999999999999987421 23578999999999
Q ss_pred CCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEecCCC
Q 004164 652 SPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSES 731 (771)
Q Consensus 652 s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~~ 731 (771)
++| +.||+|||+.|++..+|..++..|.|.|+|++|+++|+..++++++..|+++|+++|.+++++++|.|++|...+.
T Consensus 380 s~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~~~~~~~N~il~~~~~~~ 458 (482)
T KOG2352|consen 380 SKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQLYHHQLEEDVNEILIGQMPPK 458 (482)
T ss_pred CCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhHHHhhhhccCCCceeEEeecChh
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred c
Q 004164 732 C 732 (771)
Q Consensus 732 ~ 732 (771)
.
T Consensus 459 ~ 459 (482)
T KOG2352|consen 459 Q 459 (482)
T ss_pred c
Confidence 4
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=265.78 Aligned_cols=213 Identities=22% Similarity=0.341 Sum_probs=183.1
Q ss_pred eeeEEEecCCCCceeeeeEeeccCCCCCcchhhhhhhccccccccccCcccCCCCCCCceeecCCccchhHHHHHHHHhh
Q 004164 448 KFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFT 527 (771)
Q Consensus 448 ~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~L~~~Y~~~m~~~l~ 527 (771)
-+|.|.| +.+.+||.+.+. ||..|.++|+++|++++.
T Consensus 26 ~~R~L~f--~~~~~qs~~~~~-----------------------------------------~P~~l~~~y~~~m~~~l~ 62 (262)
T PRK04457 26 GVRSLHL--GSDTVQSSMRID-----------------------------------------DPSELELAYTRAMMGFLL 62 (262)
T ss_pred CEEEEEE--CCCcceeeeecC-----------------------------------------CcccccCHHHHHHHHHHh
Confidence 4999999 667999997764 467788999999997765
Q ss_pred hhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeeEEEcchHHHHHh
Q 004164 528 LISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVRE 606 (771)
Q Consensus 528 l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-~~r~~v~i~Dg~~~l~~ 606 (771)
+. +.+.+||+||+|+|+++.+++..+|..+|++||+||+|+++|+++|++.. +++++++++||.+|+.+
T Consensus 63 ~~----------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 63 FN----------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV 132 (262)
T ss_pred cC----------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh
Confidence 43 45678999999999999999999999999999999999999999998864 58999999999999976
Q ss_pred hccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 607 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
.. .+||+|++|.++... +|..+.+.+|++.++++|+|||+|+
T Consensus 133 ~~--------------------------------~~yD~I~~D~~~~~~------~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 133 HR--------------------------------HSTDVILVDGFDGEG------IIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred CC--------------------------------CCCCEEEEeCCCCCC------CccccCcHHHHHHHHHhcCCCcEEE
Confidence 43 579999999876531 4778999999999999999999999
Q ss_pred EEeccCChhHHHHHHHHHHHhccc-eEEeeecCCccEEEEEecC-CCcCCCCCHHHHHHHHhhhhcCC
Q 004164 687 VNLVSRSQATKDMVISRMKMVFNH-LFCLQLEEDVNLVLFGLSS-ESCIKDNSFPEAAVQLGKLVKFQ 752 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~vF~~-v~~~~~~~~~N~Vl~a~~~-~~~~~~~~l~~~a~~l~~~~~~~ 752 (771)
+|++.++.. ...++++++++|++ ++.++..+++|.|+||++. +.......|.++|+.+++.++++
T Consensus 175 in~~~~~~~-~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~~~~~~~~~~l~~~a~~l~~~~~~~ 241 (262)
T PRK04457 175 VNLWSRDKR-YDRYLERLESSFEGRVLELPAESHGNVAVFAFKSAPKELRWDKLRKRAKKLENEHGLD 241 (262)
T ss_pred EEcCCCchh-HHHHHHHHHHhcCCcEEEEecCCCccEEEEEECCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 999988765 45679999999985 7888888889999999985 43556677999999999888776
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=224.71 Aligned_cols=182 Identities=15% Similarity=0.225 Sum_probs=141.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC----CCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~----~~~ 591 (771)
+.||..|+ ++++..+ +.+++||+||+|+|++++.+..+.+..+|++|||||.|+++|++||.+. .++
T Consensus 87 ~~YhE~l~-h~~l~~~--------~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dp 157 (336)
T PLN02823 87 FVYHESLV-HPALLHH--------PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDK 157 (336)
T ss_pred HHHHHHHH-hHHHhhC--------CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCC
Confidence 45988555 4444443 5678999999999999998888877779999999999999999999764 479
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
|++++++||++||++.. .+||+||+|+..+ .. .+|+..|++.+|
T Consensus 158 rv~v~~~Da~~~L~~~~--------------------------------~~yDvIi~D~~dp--~~--~~~~~~Lyt~eF 201 (336)
T PLN02823 158 RLELIINDARAELEKRD--------------------------------EKFDVIIGDLADP--VE--GGPCYQLYTKSF 201 (336)
T ss_pred ceEEEEChhHHHHhhCC--------------------------------CCccEEEecCCCc--cc--cCcchhhccHHH
Confidence 99999999999997643 6799999998543 22 135788999999
Q ss_pred HH-HHHHccCCCcEEEEEeccC----ChhHHHHHHHHHHHhccceEEeee--c--CCccEEEEEecCCCc-CCCCCHHHH
Q 004164 672 LL-TVKDALSEQGLFIVNLVSR----SQATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSESC-IKDNSFPEA 741 (771)
Q Consensus 672 l~-~~~~~L~~~Gilv~Nl~~~----~~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~Vl~a~~~~~~-~~~~~l~~~ 741 (771)
|+ .++++|+|+|++++|..+. .......++++|+++|++++.+.. + .+....++|++.+.. ++...+.++
T Consensus 202 ~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~~w~f~~aS~~~~~~~~~~~~~~~ 281 (336)
T PLN02823 202 YERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVPSFADTWGWVMASDHPFADLSAEELDSR 281 (336)
T ss_pred HHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecCCCCCceEEEEEeCCccccCChhHHHHh
Confidence 99 9999999999999998653 245677899999999999877653 2 223567888886532 333334444
Q ss_pred H
Q 004164 742 A 742 (771)
Q Consensus 742 a 742 (771)
.
T Consensus 282 ~ 282 (336)
T PLN02823 282 I 282 (336)
T ss_pred h
Confidence 3
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=212.99 Aligned_cols=187 Identities=21% Similarity=0.392 Sum_probs=141.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC----CC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----DK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~----~~ 591 (771)
+.|| .|++++++.++ +.+++||+||+|.|++++.+.++.+..++++|||||.|+++||+||+... |+
T Consensus 60 ~~yh-Eml~h~~~~ah--------~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dp 130 (282)
T COG0421 60 FIYH-EMLAHVPLLAH--------PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDP 130 (282)
T ss_pred HHHH-HHHHhchhhhC--------CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCC
Confidence 4554 57778887776 77789999999999999999999988899999999999999999997655 89
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
|++++++||.+||++.. .+||+||+|.+.+. + |.+.|++.+|
T Consensus 131 Rv~i~i~Dg~~~v~~~~--------------------------------~~fDvIi~D~tdp~--g----p~~~Lft~eF 172 (282)
T COG0421 131 RVEIIIDDGVEFLRDCE--------------------------------EKFDVIIVDSTDPV--G----PAEALFTEEF 172 (282)
T ss_pred ceEEEeccHHHHHHhCC--------------------------------CcCCEEEEcCCCCC--C----cccccCCHHH
Confidence 99999999999999875 47999999876552 2 7899999999
Q ss_pred HHHHHHccCCCcEEEEEe---ccCChhHHHHHHHHHHHhccce--EEeeecC--Cc-cEEEEEecCCC-cCC-CCCHHHH
Q 004164 672 LLTVKDALSEQGLFIVNL---VSRSQATKDMVISRMKMVFNHL--FCLQLEE--DV-NLVLFGLSSES-CIK-DNSFPEA 741 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl---~~~~~~~~~~v~~~l~~vF~~v--~~~~~~~--~~-N~Vl~a~~~~~-~~~-~~~l~~~ 741 (771)
++.|+++|+++|+++.|. +... +....+...++++|+.+ |...++. .. ..+.+++.... ... .+..+.+
T Consensus 173 y~~~~~~L~~~Gi~v~q~~~~~~~~-~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~~~~~~~~~~~~~~~~ 251 (282)
T COG0421 173 YEGCRRALKEDGIFVAQAGSPFLQD-EEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAHPLKSLDALQAR 251 (282)
T ss_pred HHHHHHhcCCCcEEEEecCCcccch-HHHHHHHHHHHhhccccccceeccceecCCceEEEEeecCCCCcccchhHHHHH
Confidence 999999999999999993 2222 33456678899999843 3333333 22 34666663332 222 2234445
Q ss_pred HHHHhhhhcC
Q 004164 742 AVQLGKLVKF 751 (771)
Q Consensus 742 a~~l~~~~~~ 751 (771)
+..+ ..+++
T Consensus 252 ~~~~-~~~~y 260 (282)
T COG0421 252 ALAL-LTLKY 260 (282)
T ss_pred Hhhh-hhhcc
Confidence 5555 44454
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=209.90 Aligned_cols=169 Identities=24% Similarity=0.383 Sum_probs=132.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~~ 591 (771)
..||+.|+ ++++..+ +++++||+||+|+|++++.+.++.+..+|++|||||.|+++|++||+. ..|+
T Consensus 60 ~~y~e~l~-h~~~~~~--------~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~ 130 (246)
T PF01564_consen 60 FIYHEMLV-HPPLLLH--------PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDP 130 (246)
T ss_dssp HHHHHHHH-HHHHHHS--------SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGST
T ss_pred HHHHHHHh-hhHhhcC--------CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCC
Confidence 57888665 4455544 678999999999999999999987778999999999999999999954 2589
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
|++++++||+.||++.. ..+||+||+|+..++. |+..+++.+|
T Consensus 131 r~~i~~~Dg~~~l~~~~-------------------------------~~~yDvIi~D~~dp~~------~~~~l~t~ef 173 (246)
T PF01564_consen 131 RVRIIIGDGRKFLKETQ-------------------------------EEKYDVIIVDLTDPDG------PAPNLFTREF 173 (246)
T ss_dssp TEEEEESTHHHHHHTSS-------------------------------ST-EEEEEEESSSTTS------CGGGGSSHHH
T ss_pred ceEEEEhhhHHHHHhcc-------------------------------CCcccEEEEeCCCCCC------CcccccCHHH
Confidence 99999999999999865 1289999999977532 4556999999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEe--eecCC-ccEEEEEecCC
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCL--QLEED-VNLVLFGLSSE 730 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~--~~~~~-~N~Vl~a~~~~ 730 (771)
++.++++|+|+|++++|..+. .......+.++++++|+++..+ .++.. .+...|+..+.
T Consensus 174 ~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~ 237 (246)
T PF01564_consen 174 YQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASK 237 (246)
T ss_dssp HHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEES
T ss_pred HHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeC
Confidence 999999999999999998443 4566678889999999976554 44443 34455555444
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=203.72 Aligned_cols=167 Identities=24% Similarity=0.339 Sum_probs=134.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQD 590 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg-----~~~~ 590 (771)
+.||. |++++++..+ +.+.+||+||+|+|.+++.+..+.+..+|++|||||.|+++|++||. ..++
T Consensus 60 ~~Y~e-~l~h~~~~~~--------~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d 130 (283)
T PRK00811 60 FIYHE-MMTHVPLFAH--------PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDD 130 (283)
T ss_pred hhHHH-HhhhHHHhhC--------CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccC
Confidence 57887 5556666654 67889999999999999988887666699999999999999999993 3368
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
+|++++++||++|+++.. .+||+||+|+..+. +|+..+++.+
T Consensus 131 ~rv~v~~~Da~~~l~~~~--------------------------------~~yDvIi~D~~dp~------~~~~~l~t~e 172 (283)
T PRK00811 131 PRVELVIGDGIKFVAETE--------------------------------NSFDVIIVDSTDPV------GPAEGLFTKE 172 (283)
T ss_pred CceEEEECchHHHHhhCC--------------------------------CcccEEEECCCCCC------CchhhhhHHH
Confidence 999999999999997632 67999999875432 3677899999
Q ss_pred HHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEeee--cC---CccEEEEEecC
Q 004164 671 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--EE---DVNLVLFGLSS 729 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~~---~~N~Vl~a~~~ 729 (771)
|++.++++|+|||++++|..+. +......++++|+++|+++..+.. +. +....++|++.
T Consensus 173 f~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 173 FYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKN 238 (283)
T ss_pred HHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEeecC
Confidence 9999999999999999987543 355667889999999999866653 22 22345778774
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=199.99 Aligned_cols=169 Identities=21% Similarity=0.329 Sum_probs=133.4
Q ss_pred chhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCC
Q 004164 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 590 (771)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~ 590 (771)
.+.||. |++++++..+ +.+.+||+||+|+|++++.+.++.+..+|++||||+.|+++|++||.. ..+
T Consensus 74 e~~Y~e-~l~h~~l~~~--------~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~d 144 (308)
T PLN02366 74 ECAYQE-MITHLPLCSI--------PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDD 144 (308)
T ss_pred HHHHHH-HHHHHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCC
Confidence 356866 6667777654 678999999999999999998885556999999999999999999942 258
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
+|++++++||++|+++.. +.+||+||+|++.+. .|+..+++.+
T Consensus 145 pRv~vi~~Da~~~l~~~~-------------------------------~~~yDvIi~D~~dp~------~~~~~L~t~e 187 (308)
T PLN02366 145 PRVNLHIGDGVEFLKNAP-------------------------------EGTYDAIIVDSSDPV------GPAQELFEKP 187 (308)
T ss_pred CceEEEEChHHHHHhhcc-------------------------------CCCCCEEEEcCCCCC------CchhhhhHHH
Confidence 899999999999998753 257999999875542 2678899999
Q ss_pred HHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhcc-ceEE--eeecC---CccEEEEEecC
Q 004164 671 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFN-HLFC--LQLEE---DVNLVLFGLSS 729 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~-~v~~--~~~~~---~~N~Vl~a~~~ 729 (771)
||+.++++|+|||+++.|.-+. .......++++|+++|+ .+.. ..++. +....++|++.
T Consensus 188 f~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 188 FFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred HHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 9999999999999999876432 34556788999999994 5433 23332 23557788776
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=191.28 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=131.1
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-------
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 588 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~------- 588 (771)
+.||..|+. .++..+ +.+.+||+||+|+|.+++.+.++.+..+|++|||||+|+++|+++|.+.
T Consensus 134 ~iYHE~Lvh-p~m~~h--------~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~ 204 (374)
T PRK01581 134 QIYHEALVH-PIMSKV--------IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF 204 (374)
T ss_pred HHHHHHHHH-HHHHhC--------CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence 458886664 444443 6788999999999999888888766679999999999999999976543
Q ss_pred CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc
Q 004164 589 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 668 (771)
Q Consensus 589 ~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~ 668 (771)
.++|++++++||++|++... .+||+||+|+..+ .. .++..+++
T Consensus 205 ~DpRV~vvi~Da~~fL~~~~--------------------------------~~YDVIIvDl~DP--~~---~~~~~LyT 247 (374)
T PRK01581 205 FDNRVNVHVCDAKEFLSSPS--------------------------------SLYDVIIIDFPDP--AT---ELLSTLYT 247 (374)
T ss_pred CCCceEEEECcHHHHHHhcC--------------------------------CCccEEEEcCCCc--cc---cchhhhhH
Confidence 57999999999999998643 5799999997543 21 24688999
Q ss_pred HHHHHHHHHccCCCcEEEEEeccCC--hhHHHHHHHHHHHhccceEEeee--c--CCccEEEEEecCCC
Q 004164 669 GSFLLTVKDALSEQGLFIVNLVSRS--QATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSES 731 (771)
Q Consensus 669 ~~fl~~~~~~L~~~Gilv~Nl~~~~--~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~Vl~a~~~~~ 731 (771)
.+||+.++++|+|||+|+++.-+.. ......+..+|+++|..+..+.. + .+....++|++.+.
T Consensus 248 ~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~ 316 (374)
T PRK01581 248 SELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAY 316 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCcc
Confidence 9999999999999999998854432 22335578999999997655543 2 23356777877653
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=176.66 Aligned_cols=167 Identities=21% Similarity=0.316 Sum_probs=131.4
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~~ 591 (771)
..||. |++++++..+ +.+.+||+||+|+|.++..+..+.+..++++||+|+.|++.|+++|.. ..++
T Consensus 56 ~~y~e-~l~~~~l~~~--------~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~ 126 (270)
T TIGR00417 56 FIYHE-MIAHVPLFTH--------PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDP 126 (270)
T ss_pred HHHHH-HhhhhHhhcC--------CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCC
Confidence 56876 4555555544 567799999999999998888876667999999999999999999832 3578
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
+++++++||++|+++.. .+||+||+|...+. .|+..+++.+|
T Consensus 127 ~v~i~~~D~~~~l~~~~--------------------------------~~yDvIi~D~~~~~------~~~~~l~~~ef 168 (270)
T TIGR00417 127 RVDLQIDDGFKFLADTE--------------------------------NTFDVIIVDSTDPV------GPAETLFTKEF 168 (270)
T ss_pred ceEEEECchHHHHHhCC--------------------------------CCccEEEEeCCCCC------CcccchhHHHH
Confidence 99999999999998643 57999999875432 24677899999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEeee--c---CCccEEEEEecC
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E---EDVNLVLFGLSS 729 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~---~~~N~Vl~a~~~ 729 (771)
++.++++|+|||++++|..+. .......+.++++++|+++..+.. + .+....++|++.
T Consensus 169 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~ 233 (270)
T TIGR00417 169 YELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN 233 (270)
T ss_pred HHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence 999999999999999985443 245566778999999998755543 2 334678888873
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-18 Score=173.32 Aligned_cols=127 Identities=24% Similarity=0.434 Sum_probs=111.0
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEee
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMD 124 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D 124 (771)
++....+++.+...+.. .++.+|||+|||||.++..+++. |.++|+++|+|+.|++.++++....+ .+++|+.+|
T Consensus 33 ~g~~~~Wr~~~i~~~~~---~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~d 109 (238)
T COG2226 33 FGLHRLWRRALISLLGI---KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGD 109 (238)
T ss_pred CcchHHHHHHHHHhhCC---CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEec
Confidence 44455556667777664 47999999999999999999987 66799999999999999999987654 349999999
Q ss_pred cCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 125 MTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 125 ~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
++++||+|++||+|.+...|+++.+. +++|+|++|+|||||+++|.+++++.
T Consensus 110 Ae~LPf~D~sFD~vt~~fglrnv~d~-------~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 110 AENLPFPDNSFDAVTISFGLRNVTDI-------DKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred hhhCCCCCCccCEEEeeehhhcCCCH-------HHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99999999999999999999999874 49999999999999999999998764
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-17 Score=169.05 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=122.6
Q ss_pred ceeecCCcc-----chhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHH
Q 004164 506 QLKVYHGYL-----ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL 580 (771)
Q Consensus 506 ~~~vd~~~L-----~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~v 580 (771)
++.+| ..+ .+-||. |+++.+|.+| +.|++|||||+|.|++.+-+.++ |. +|+.||||++|+++
T Consensus 42 ~LvLD-~~~~te~dEfiYHE-mLvHppl~~h--------~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~ 109 (262)
T PRK00536 42 IAMLN-KQLLFKNFLHIESE-LLAHMGGCTK--------KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDS 109 (262)
T ss_pred EEEEe-eeeeecchhhhHHH-HHHHHHHhhC--------CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHH
Confidence 45566 433 356765 6777888877 88999999999999998877777 44 99999999999999
Q ss_pred HHhhc-----CCCCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCC
Q 004164 581 AEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 655 (771)
Q Consensus 581 A~~~F-----g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~ 655 (771)
||+|| ++ +|+|+++++ ++.+.. .++||+||+|. .
T Consensus 110 ~k~~lP~~~~~~-~DpRv~l~~-----~~~~~~-------------------------------~~~fDVIIvDs--~-- 148 (262)
T PRK00536 110 FISFFPHFHEVK-NNKNFTHAK-----QLLDLD-------------------------------IKKYDLIICLQ--E-- 148 (262)
T ss_pred HHHHCHHHHHhh-cCCCEEEee-----hhhhcc-------------------------------CCcCCEEEEcC--C--
Confidence 99998 33 789999997 333321 25799999973 1
Q ss_pred CCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEee--ecC-CccEEEEEecCC
Q 004164 656 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSE 730 (771)
Q Consensus 656 ~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~Vl~a~~~~ 730 (771)
.+++|++.++++|+|+|+++...-+. .......+.++++++|+.+..+. ++. +....++|++..
T Consensus 149 -----------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~g~wgf~~aS~~~ 217 (262)
T PRK00536 149 -----------PDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_pred -----------CChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecCCCcchhhhheecCCC
Confidence 34899999999999999999876444 35666788999999999764443 222 345577787653
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=156.34 Aligned_cols=172 Identities=29% Similarity=0.448 Sum_probs=128.5
Q ss_pred hhhhccCCCCHhhHHHHHhhcC-----CCCcc-ccccchhHHHHHHHHhhCC----CC-CCCCCeEEEEcCCcchhHHHH
Q 004164 18 LLQTLGDFTSKENWDKFFTIRG-----IGDSF-EWYAEWPQLRDPLISLIGA----PT-SSPPPQILVPGCGNSRLSEHL 86 (771)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~-----~~~~~-ew~~~~~~l~~~l~~~l~~----~~-~~~~~~ILDiGCG~G~ls~~L 86 (771)
++.+. .+.++||++.|.... +++.- -|++.-. ...+..|+.. .+ .....+|||+|||||.+...|
T Consensus 10 l~~S~--LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~a--e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L 85 (227)
T KOG1271|consen 10 LGQSK--LGTKSYWDAAYELELTNFREHGDEGEVWFGEDA--EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQL 85 (227)
T ss_pred ccccc--cchHHHHHHHHHHHHhhcccCCCccceecCCcH--HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHH
Confidence 44443 678999999997652 12222 2888643 3345555432 11 123459999999999999999
Q ss_pred HhcCCCe-EEEEcCCHHHHHHHHHHhhcCC-CC-cEEEEeecCCCCCCCCCccEEEeccccccccCcccchHH-HHHHHH
Q 004164 87 YDAGFHG-ITNVDFSKVVISDMLRRNVRDR-SD-MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKL-GNQYLS 162 (771)
Q Consensus 87 a~~g~~~-V~~vDiS~~~i~~~~~~~~~~~-~~-i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~-~~~~l~ 162 (771)
++.|+.. .+|+|+|+.+++.|+..+.... ++ |+|.+.|+.+..+..++||+|+++|+++++.-..++... ...++.
T Consensus 86 ~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d 165 (227)
T KOG1271|consen 86 AKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLD 165 (227)
T ss_pred HHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehh
Confidence 9999844 9999999999998876665544 33 999999999988888999999999999998744323222 367899
Q ss_pred HHHHccccCeEEEEEEcCcchhhcchhhhhccC
Q 004164 163 EVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFG 195 (771)
Q Consensus 163 ~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~ 195 (771)
.+.++|+|||+|+|.+.. +...++...+..+
T Consensus 166 ~v~~ll~~~gifvItSCN--~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 166 SVEKLLSPGGIFVITSCN--FTKDELVEEFENF 196 (227)
T ss_pred hHhhccCCCcEEEEEecC--ccHHHHHHHHhcC
Confidence 999999999999998865 6667777777543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-15 Score=170.54 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=94.1
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC--CCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS--MQFMDE 133 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~--l~~~~~ 133 (771)
.+.+.+.. .++.+|||+|||+|.++..|++.+. +|+++|+|+.+++.+++.. ...+++.++++|+.+ ++++++
T Consensus 28 ~il~~l~~---~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 28 EILSLLPP---YEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred HHHhhcCc---cCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccCCCCC
Confidence 35555543 4567999999999999999998854 8999999999998765433 334689999999963 577889
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+||+|++..+++++.+.+ ...+++++.++|||||++++.+.
T Consensus 103 ~fD~I~~~~~l~~l~~~~-----~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKE-----VENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CEEEEehhhhHHhCCHHH-----HHHHHHHHHHhcCCCeEEEEEec
Confidence 999999999999987644 67999999999999999988764
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.9e-17 Score=166.76 Aligned_cols=121 Identities=26% Similarity=0.448 Sum_probs=89.9
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~ 129 (771)
++..+.+.+.. .++.+|||+|||||.++..+++. + .++|+++|+|+.|++.++++....+ .+++|+++|++++|
T Consensus 35 wr~~~~~~~~~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp 111 (233)
T PF01209_consen 35 WRRKLIKLLGL---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP 111 (233)
T ss_dssp --SHHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--
T ss_pred HHHHHHhccCC---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc
Confidence 33445555543 57889999999999999999886 3 3699999999999999998876543 58999999999999
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
+++++||+|++...++.+.+. .++++|++|+|||||++++++++.+.
T Consensus 112 ~~d~sfD~v~~~fglrn~~d~-------~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 112 FPDNSFDAVTCSFGLRNFPDR-------ERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp S-TT-EEEEEEES-GGG-SSH-------HHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CCCCceeEEEHHhhHHhhCCH-------HHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 999999999999999998764 48999999999999999999998654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=174.09 Aligned_cols=168 Identities=17% Similarity=0.254 Sum_probs=124.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-------C
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------T 588 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-------~ 588 (771)
..||..++ +.++..+ +++++||+||+|+|.+++.+.++.+..+|++|||||+|+++|+++|.+ .
T Consensus 281 ~~y~e~l~-~~~l~~~--------~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~ 351 (521)
T PRK03612 281 YRYHEALV-HPAMAAS--------ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGAL 351 (521)
T ss_pred HHHHHHHH-HHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcccc
Confidence 34776544 4444433 567899999999999999888764336999999999999999996533 2
Q ss_pred CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc
Q 004164 589 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 668 (771)
Q Consensus 589 ~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~ 668 (771)
+++|++++++||++|+++.. ++||+||+|...+... .+..+++
T Consensus 352 ~dprv~vi~~Da~~~l~~~~--------------------------------~~fDvIi~D~~~~~~~-----~~~~L~t 394 (521)
T PRK03612 352 DDPRVTVVNDDAFNWLRKLA--------------------------------EKFDVIIVDLPDPSNP-----ALGKLYS 394 (521)
T ss_pred CCCceEEEEChHHHHHHhCC--------------------------------CCCCEEEEeCCCCCCc-----chhccch
Confidence 46899999999999997643 5799999986443210 1467999
Q ss_pred HHHHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHh-ccceEEe--eecCC-ccEEEEEecCC
Q 004164 669 GSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMV-FNHLFCL--QLEED-VNLVLFGLSSE 730 (771)
Q Consensus 669 ~~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~v-F~~v~~~--~~~~~-~N~Vl~a~~~~ 730 (771)
.+|++.++++|+|||++++|..+. .......+.++++++ | .+..+ .++.. .....+|++..
T Consensus 395 ~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~g~w~f~~as~~~ 461 (521)
T PRK03612 395 VEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPSFGEWGFVLAGAGA 461 (521)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCCcchhHHHeeeCCC
Confidence 999999999999999999997544 244556788999999 8 44332 22322 22366676653
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-15 Score=156.43 Aligned_cols=121 Identities=25% Similarity=0.335 Sum_probs=100.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhh----cCCCCcEEEEeecC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNV----RDRSDMRWRVMDMT 126 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~----~~~~~i~~~~~D~~ 126 (771)
++..+.+++.. .++.+|||+|||+|.++..+++. + .++|+|+|+|+.|++.++++.. ....+++++++|+.
T Consensus 61 ~r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~ 137 (261)
T PLN02233 61 WKRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT 137 (261)
T ss_pred HHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc
Confidence 34444455543 56889999999999999988876 4 3589999999999998876642 12357999999999
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
++|+++++||+|++..+++++.++ ..++++++|+|||||++++.++..+.
T Consensus 138 ~lp~~~~sfD~V~~~~~l~~~~d~-------~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 138 DLPFDDCYFDAITMGYGLRNVVDR-------LKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred cCCCCCCCEeEEEEecccccCCCH-------HHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999999999999999999998764 48999999999999999999987543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-15 Score=151.59 Aligned_cols=140 Identities=19% Similarity=0.293 Sum_probs=105.1
Q ss_pred hhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHH
Q 004164 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108 (771)
Q Consensus 29 ~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~ 108 (771)
+||+++|+.. ..-|... .....+.+++......++.+|||+|||.|..+..|++.|+ +|+|+|+|+.+++.+.
T Consensus 1 ~~Wd~ry~~~----~~~w~~~--~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 1 EFWHERWQEG----QIGFHQS--EVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFF 73 (213)
T ss_pred ChHHHHHhcC----CCCCccC--CCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHH
Confidence 4899999765 2345422 1222333333321113568999999999999999999999 9999999999999764
Q ss_pred HHhhc-------------CCCCcEEEEeecCCCCCC-CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEE
Q 004164 109 RRNVR-------------DRSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 174 (771)
Q Consensus 109 ~~~~~-------------~~~~i~~~~~D~~~l~~~-~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ 174 (771)
+++.. ...++++.++|+.+++.. .+.||.|++.+++++++... +..+++.+.++|||||++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~-----R~~~~~~l~~lLkpgG~~ 148 (213)
T TIGR03840 74 AENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEM-----RQRYAAHLLALLPPGARQ 148 (213)
T ss_pred HHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHH-----HHHHHHHHHHHcCCCCeE
Confidence 43311 234789999999988643 46799999999999886443 789999999999999998
Q ss_pred EEEEcC
Q 004164 175 VCLTLA 180 (771)
Q Consensus 175 ii~~~~ 180 (771)
+++++.
T Consensus 149 ll~~~~ 154 (213)
T TIGR03840 149 LLITLD 154 (213)
T ss_pred EEEEEE
Confidence 887764
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-15 Score=133.01 Aligned_cols=95 Identities=29% Similarity=0.513 Sum_probs=81.2
Q ss_pred EEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCccc
Q 004164 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPEL 152 (771)
Q Consensus 73 LDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~ 152 (771)
||+|||+|..+..|++.+..+|+++|+|+.+++.++++... ..+.+.++|++++|+++++||+|++.++++++.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCccccccccccccccceeeccC---
Confidence 89999999999999999555999999999999988777633 4566999999999999999999999999999832
Q ss_pred chHHHHHHHHHHHHccccCeEEEE
Q 004164 153 GHKLGNQYLSEVKRLLKSGGKFVC 176 (771)
Q Consensus 153 ~~~~~~~~l~~i~rvLkpGG~~ii 176 (771)
..++++++.|+|||||++++
T Consensus 76 ----~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 ----PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----HHHHHHHHHHHEEEEEEEEE
T ss_pred ----HHHHHHHHHHHcCcCeEEeC
Confidence 56999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=146.10 Aligned_cols=134 Identities=22% Similarity=0.339 Sum_probs=109.1
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CC------CeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEe
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRDR----SDMRWRVM 123 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~------~~V~~vDiS~~~i~~~~~~~~~~~----~~i~~~~~ 123 (771)
..+...+.. .++.++||++||||.++..+.+. +. .+|+.+|||+.|++.++++..+.. ..+.|+++
T Consensus 90 d~~v~~L~p---~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 90 DMFVSKLGP---GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHhhhccCC---CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 345555543 67899999999999999888876 22 689999999999999988875433 34899999
Q ss_pred ecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEE
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 200 (771)
|++++||++.+||.....+.+.+..+.+ +++++.+|+|||||+|.|.++++ ...+.+..+-..|...+
T Consensus 167 dAE~LpFdd~s~D~yTiafGIRN~th~~-------k~l~EAYRVLKpGGrf~cLeFsk--v~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTIAFGIRNVTHIQ-------KALREAYRVLKPGGRFSCLEFSK--VENEPLKWFYDQYSFDV 234 (296)
T ss_pred CcccCCCCCCcceeEEEecceecCCCHH-------HHHHHHHHhcCCCcEEEEEEccc--cccHHHHHHHHhhhhhh
Confidence 9999999999999999999999988754 99999999999999999999983 33344555555555554
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=149.37 Aligned_cols=141 Identities=20% Similarity=0.300 Sum_probs=106.1
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~ 106 (771)
+.+||+++|.... ..|... .....+.+++......++.+|||+|||.|..+..|++.|+ +|+|+|+|+.+|+.
T Consensus 2 ~~~~Wd~rw~~~~----~~~~~~--~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~ 74 (218)
T PRK13255 2 DPDFWHEKWAENQ----IGFHQE--EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ 74 (218)
T ss_pred CHhHHHHHHcCCC----CCCCCC--CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence 3679999997652 234322 2334455555322224568999999999999999999999 89999999999997
Q ss_pred HHHHhhc-------------CCCCcEEEEeecCCCCCC-CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCe
Q 004164 107 MLRRNVR-------------DRSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (771)
Q Consensus 107 ~~~~~~~-------------~~~~i~~~~~D~~~l~~~-~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG 172 (771)
+.++... ...++++.++|+.+++.. ...||+|++..++++++... +..++..+.++|+|||
T Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~-----R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 75 FFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEM-----RERYVQQLAALLPAGC 149 (218)
T ss_pred HHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHH-----HHHHHHHHHHHcCCCC
Confidence 6543211 135789999999988533 36899999999999986443 7899999999999998
Q ss_pred EEEEEEc
Q 004164 173 KFVCLTL 179 (771)
Q Consensus 173 ~~ii~~~ 179 (771)
+++++++
T Consensus 150 ~~~l~~~ 156 (218)
T PRK13255 150 RGLLVTL 156 (218)
T ss_pred eEEEEEE
Confidence 7666544
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.4e-14 Score=144.22 Aligned_cols=143 Identities=15% Similarity=0.263 Sum_probs=112.4
Q ss_pred CCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHH
Q 004164 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (771)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~ 105 (771)
.+.+||+++|+... ..|... .....|.+++......++.+||++|||.|....+|++.|+ +|+|+|+|+.+|+
T Consensus 7 ~~~~fW~~rw~~~~----~~f~~~--~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~ 79 (226)
T PRK13256 7 NNNQYWLDRWQNDD----VGFCQE--SPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVL 79 (226)
T ss_pred CCHHHHHHHHhcCC----CCCccC--CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHH
Confidence 46789999999762 345443 2334455555443334568999999999999999999999 8999999999999
Q ss_pred HHHHHhh-------------cCCCCcEEEEeecCCCCCC---CCCccEEEeccccccccCcccchHHHHHHHHHHHHccc
Q 004164 106 DMLRRNV-------------RDRSDMRWRVMDMTSMQFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 169 (771)
Q Consensus 106 ~~~~~~~-------------~~~~~i~~~~~D~~~l~~~---~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLk 169 (771)
.+.+++. ..+.++++.++|+.+++.. .+.||+|++.++|.+++... +.++.+.+.++|+
T Consensus 80 ~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~-----R~~Y~~~l~~lL~ 154 (226)
T PRK13256 80 SFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDL-----RTNYAKMMLEVCS 154 (226)
T ss_pred HHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHH-----HHHHHHHHHHHhC
Confidence 8766431 1235799999999998632 26899999999999996543 8899999999999
Q ss_pred cCeEEEEEEcC
Q 004164 170 SGGKFVCLTLA 180 (771)
Q Consensus 170 pGG~~ii~~~~ 180 (771)
|||.++++++.
T Consensus 155 pgg~llll~~~ 165 (226)
T PRK13256 155 NNTQILLLVME 165 (226)
T ss_pred CCcEEEEEEEe
Confidence 99999998874
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=156.60 Aligned_cols=107 Identities=19% Similarity=0.322 Sum_probs=93.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||||||+|.++..|++....+|+|+|+|+.+++.++++....+ ++++|+++|+.++++++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 4678999999999999999998733399999999999998877665443 47999999999999999999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+.+. ..++++++++|||||+|++.++.
T Consensus 197 ~h~~d~-------~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 197 EHMPDK-------RKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hccCCH-------HHHHHHHHHHcCCCcEEEEEEec
Confidence 998763 48999999999999999998865
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-14 Score=143.96 Aligned_cols=114 Identities=24% Similarity=0.354 Sum_probs=93.7
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDET 134 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~s 134 (771)
.+.+.+.. .++.+|||+|||+|..+..|++.|. +|+++|+|+.+++.+++.....+ .++++.+.|+.+++++ ++
T Consensus 21 ~l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 95 (197)
T PRK11207 21 EVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GE 95 (197)
T ss_pred HHHHhccc---CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CC
Confidence 34555543 4568999999999999999999987 99999999999998877665444 4589999999888775 67
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
||+|++..+++++...+ ...+++++.++|+|||++++++.
T Consensus 96 fD~I~~~~~~~~~~~~~-----~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 96 YDFILSTVVLMFLEAKT-----IPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred cCEEEEecchhhCCHHH-----HHHHHHHHHHHcCCCcEEEEEEE
Confidence 99999999998875433 67999999999999999766553
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-14 Score=129.00 Aligned_cols=106 Identities=28% Similarity=0.388 Sum_probs=86.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhh--cCCCCcEEEEeec-CCCCCCCCCccEEEecc-
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDM-TSMQFMDETFDVILDKG- 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~--~~~~~i~~~~~D~-~~l~~~~~sFDlVi~~~- 142 (771)
|+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.. ...+++++++.|+ ..... .+.||+|++.+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 5789999999999999999993 44489999999999999988873 3447999999999 33333 35699999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+++++...+ ....+++.+.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~----~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLD----ERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchh----HHHHHHHHHHHhcCCCcEEEEEE
Confidence 666554321 26789999999999999999875
|
... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=137.20 Aligned_cols=131 Identities=24% Similarity=0.385 Sum_probs=99.7
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~ 106 (771)
..+||.+.|... ...+. +.+.++. .++.++||+|||.|+.+.+|++.|+ +|+++|+|+.+++.
T Consensus 5 ~~~y~~kky~~~---------~~hs~----v~~a~~~---~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~ 67 (192)
T PF03848_consen 5 PEDYFHKKYGLT---------PTHSE----VLEAVPL---LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEK 67 (192)
T ss_dssp STTHHHHHHTB-------------HH----HHHHCTT---S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred HHHHHHHhhCCC---------CCcHH----HHHHHhh---cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 356777766543 12222 3444443 3568999999999999999999999 99999999999999
Q ss_pred HHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 107 MLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 107 ~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.+.+....-.++..+.|+.+..++ +.||+|++..+++++.... +.++++.+...++|||++++.++.
T Consensus 68 l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~-----~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 68 LQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQREL-----RPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGG-----HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred HHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHH-----HHHHHHHHHhhcCCcEEEEEEEec
Confidence 8877767777799999999998875 6899999988898887554 789999999999999999887653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=141.92 Aligned_cols=127 Identities=23% Similarity=0.323 Sum_probs=102.7
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEe
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVM 123 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~ 123 (771)
+......+..+...+.. .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.++++..... ++++++++
T Consensus 27 ~~~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~ 103 (231)
T TIGR02752 27 FQRHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG 103 (231)
T ss_pred CCchHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe
Confidence 33444445556666654 56789999999999999999876 3 3589999999999998877764333 57899999
Q ss_pred ecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
|+.++++++++||+|++..+++++.+. .++++++.++|+|||++++.+...+.
T Consensus 104 d~~~~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 104 NAMELPFDDNSFDYVTIGFGLRNVPDY-------MQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred chhcCCCCCCCccEEEEecccccCCCH-------HHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 999988888999999999999887653 48999999999999999998876543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=134.43 Aligned_cols=106 Identities=27% Similarity=0.420 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHh-cC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYD-AG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~-~g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDlVi~~ 141 (771)
+.+.+|||+|||+|.++..|++ .+ ..+++|+|+|+.+++.+++++...+ ++++|.++|+.+++ ++ ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 3578999999999999999994 32 3589999999999999988765444 57999999999987 55 899999999
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++++++.+. ..+++++.++|++||.+++.++.
T Consensus 81 ~~l~~~~~~-------~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDP-------EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHH-------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCH-------HHHHHHHHHHcCCCcEEEEEECC
Confidence 999888754 38999999999999999999876
|
... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=141.38 Aligned_cols=141 Identities=26% Similarity=0.379 Sum_probs=105.2
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~ 106 (771)
+.+||+++|+... ..+......+.+...+.. +.. .++.+||.+|||.|.....|++.|+ +|+|+|+|+.+|+.
T Consensus 2 ~~~~W~~~w~~~~--~~w~~~~~~p~L~~~~~~-l~~---~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 2 DPEFWEERWQEGQ--TPWDQGEPNPALVEYLDS-LAL---KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQ 74 (218)
T ss_dssp HHHHHHHHHHTT----TT--TTSTHHHHHHHHH-HTT---STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHH
T ss_pred CHHHHHHHHhcCC--CCCCCCCCCHHHHHHHHh-cCC---CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence 3689999999762 333333344555555555 222 5678999999999999999999999 99999999999998
Q ss_pred HHHHhhc-------------CCCCcEEEEeecCCCCCCC-CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCe
Q 004164 107 MLRRNVR-------------DRSDMRWRVMDMTSMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (771)
Q Consensus 107 ~~~~~~~-------------~~~~i~~~~~D~~~l~~~~-~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG 172 (771)
+.+++.. ...++++.++|+.+++... ++||+|++.++|.+++... +.++.+.+.++|+|||
T Consensus 75 ~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~-----R~~Ya~~l~~ll~p~g 149 (218)
T PF05724_consen 75 AFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEM-----RERYAQQLASLLKPGG 149 (218)
T ss_dssp HHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGG-----HHHHHHHHHHCEEEEE
T ss_pred HHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHH-----HHHHHHHHHHHhCCCC
Confidence 8555421 1136789999999986433 5899999999999997554 8899999999999999
Q ss_pred EEEEEEc
Q 004164 173 KFVCLTL 179 (771)
Q Consensus 173 ~~ii~~~ 179 (771)
.++++++
T Consensus 150 ~~lLi~l 156 (218)
T PF05724_consen 150 RGLLITL 156 (218)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 9554443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=144.34 Aligned_cols=155 Identities=20% Similarity=0.246 Sum_probs=118.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-------CCCCCCCeeEEEcchHHHHHhhccCCc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-------GFTQDKSLKVHITDGIKFVREMKSSSA 612 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-------g~~~~~r~~v~i~Dg~~~l~~~~~~~~ 612 (771)
....+||+||+|.|...+-|.+.....+|+-||+||.|+++|++.- |--.|+|++|+++||.+|++..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~---- 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA---- 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc----
Confidence 4568999999999999888888744679999999999999998543 22368999999999999999865
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 613 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..||+||+|+-+++..+ ...+++.||+..++++|+++|++|+.--+.
T Consensus 364 ----------------------------~~fD~vIVDl~DP~tps-----~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 364 ----------------------------DMFDVVIVDLPDPSTPS-----IGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred ----------------------------ccccEEEEeCCCCCCcc-----hhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 58999999995554221 467899999999999999999999987543
Q ss_pred --ChhHHHHHHHHHHHhccceEEee--ecC-CccEEEEEecCCC
Q 004164 693 --SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSES 731 (771)
Q Consensus 693 --~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~Vl~a~~~~~ 731 (771)
.+...-.+.++++++=-.++-+. ++. +..-.++|.+.+.
T Consensus 411 y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~~~ 454 (508)
T COG4262 411 YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPGDA 454 (508)
T ss_pred ccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccccC
Confidence 34444567788887644333332 233 2344677776664
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-14 Score=143.89 Aligned_cols=106 Identities=25% Similarity=0.403 Sum_probs=98.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||-|.++..||+.|. +|+|+|+++.+|+.++.++.+.+-.+.|.+..++++....++||+|++..++.|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 789999999999999999999996 9999999999999999888777777889999999887666899999999999999
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++++ .++..+.+++||||.+++++..+
T Consensus 138 ~dp~-------~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 138 PDPE-------SFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred CCHH-------HHHHHHHHHcCCCcEEEEecccc
Confidence 9876 89999999999999999999874
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=138.80 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=92.8
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCc
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (771)
.+.+.+.. .++.+|||+|||+|.++..|++.|. +|+++|+|+.+++.++++....+-++.+.+.|+...+++ ++|
T Consensus 21 ~l~~~~~~---~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~f 95 (195)
T TIGR00477 21 AVREAVKT---VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDY 95 (195)
T ss_pred HHHHHhcc---CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCC
Confidence 34555543 3567999999999999999999887 999999999999988776655554578888888776654 689
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|+|++..+++++.... ...++++++++|+|||++++++.
T Consensus 96 D~I~~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGR-----VPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CEEEEecccccCCHHH-----HHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999998875433 67999999999999999777654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=143.19 Aligned_cols=114 Identities=20% Similarity=0.351 Sum_probs=95.4
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDET 134 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~s 134 (771)
..+.+.+.. .+..+|||+|||+|.++..++..+. +++++|+|+.+++.++++. ....++++|+.++++++++
T Consensus 32 ~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~----~~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 32 DALLAMLPQ---RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKD----AADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHhcCc---cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC----CCCCEEEcCcccCcCCCCc
Confidence 344444442 4568999999999999999988775 9999999999998776553 2457899999999999999
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
||+|++..+++++.+. ..++.++.++|+|||.+++.++....
T Consensus 104 fD~V~s~~~l~~~~d~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 104 FDLAWSNLAVQWCGNL-------STALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred EEEEEECchhhhcCCH-------HHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 9999999999987664 48999999999999999999987554
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=144.26 Aligned_cols=109 Identities=16% Similarity=0.251 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||||||+|..+..++.....+|+++|+|+.+++.+++++.. ..++.+.++|+.+.++++++||+|++..+++|
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAILH 129 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhHHh
Confidence 67899999999999999988775223899999999999988777643 46799999999999999999999999888888
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+...+ ...++++++++|||||++++.++..
T Consensus 130 ~~~~d-----~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 130 LSYAD-----KKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CCHHH-----HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 65323 5699999999999999999998764
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-13 Score=149.65 Aligned_cols=107 Identities=20% Similarity=0.242 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||||||+|.++..|++.|. +|+|+|+|+.+++.++++..... .++.++++|++++++++++||+|++.+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3567999999999999999998776 89999999999998876653322 47999999999998888899999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+|+.++. .+++++.++|||||.+++.+...
T Consensus 209 eHv~d~~-------~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 209 EHVANPA-------EFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HhcCCHH-------HHHHHHHHHcCCCcEEEEEECCc
Confidence 9998755 89999999999999999998764
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=134.01 Aligned_cols=141 Identities=20% Similarity=0.280 Sum_probs=102.1
Q ss_pred CCHhhHHHHHhhcCCCCccc----cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCH
Q 004164 26 TSKENWDKFFTIRGIGDSFE----WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (771)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~e----w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~ 101 (771)
.+.++|++.++.. +++. ||... .....+...+.. ..-.++||+|||+|.++..|+... .+++++|+|+
T Consensus 4 ~~~~~l~~~la~~---DPW~~~~~~YE~~-K~~~~l~aaLp~---~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~ 75 (201)
T PF05401_consen 4 DNYQLLNRELAND---DPWGFETSWYERR-KYRATLLAALPR---RRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISP 75 (201)
T ss_dssp SHHHHHHHHHTSS---SGGGTTT-HHHHH-HHHHHHHHHHTT---SSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-H
T ss_pred cHHHHHHHHhCCC---CCCCCCCCHHHHH-HHHHHHHHhcCc---cccceeEecCCCccHHHHHHHHhh-CceEEEeCCH
Confidence 3567888888765 4433 44331 111123334544 456799999999999999999985 4899999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 102 VVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 102 ~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.+|+.++++.. ..++++|.++|+.+. .++++||+|++..++|++.+.+ .+..++..+...|+|||.+++.+..
T Consensus 76 ~Al~~Ar~Rl~-~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~----~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 76 RALARARERLA-GLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAE----DLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHHHHHHHHTT-T-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHH----HHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHHHhcC-CCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHH----HHHHHHHHHHHHhCCCCEEEEEEec
Confidence 99999998885 447999999999885 4679999999999999997633 2788999999999999999998865
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-13 Score=142.84 Aligned_cols=148 Identities=22% Similarity=0.321 Sum_probs=108.7
Q ss_pred hhhhhhccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC----C
Q 004164 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG----F 91 (771)
Q Consensus 16 ~~lP~~~~~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g----~ 91 (771)
..+|..........+|.+.+..+ ..|-+.+.|..+...+...+......+..+|||+|||+|.++..+++.. .
T Consensus 36 ~ll~~~~~~~~~~~d~~~~~~ar---~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~ 112 (272)
T PRK11088 36 NLLPVQHKRSKDPGDNKEMMQAR---RAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITT 112 (272)
T ss_pred EeccccccCCCCCCcCHHHHHHH---HHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccC
Confidence 33554444445556777777655 3444455666676666555543212356789999999999999988752 2
Q ss_pred CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccC
Q 004164 92 HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSG 171 (771)
Q Consensus 92 ~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpG 171 (771)
..++|+|+|+.+++.+.++ .+++.|.++|+.++|+++++||+|++..+ + ..+++++|+||||
T Consensus 113 ~~v~giD~s~~~l~~A~~~----~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------~--------~~~~e~~rvLkpg 174 (272)
T PRK11088 113 MQLFGLDISKVAIKYAAKR----YPQVTFCVASSHRLPFADQSLDAIIRIYA------P--------CKAEELARVVKPG 174 (272)
T ss_pred CeEEEECCCHHHHHHHHHh----CCCCeEEEeecccCCCcCCceeEEEEecC------C--------CCHHHHHhhccCC
Confidence 3799999999999877554 36799999999999999999999997432 1 2368899999999
Q ss_pred eEEEEEEcCcchh
Q 004164 172 GKFVCLTLAESHV 184 (771)
Q Consensus 172 G~~ii~~~~~~~~ 184 (771)
|+|++++....+.
T Consensus 175 G~li~~~p~~~~l 187 (272)
T PRK11088 175 GIVITVTPGPRHL 187 (272)
T ss_pred CEEEEEeCCCcch
Confidence 9999998876664
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-13 Score=124.44 Aligned_cols=96 Identities=30% Similarity=0.477 Sum_probs=81.1
Q ss_pred EEEEcCCcchhHHHHHhc---CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccc-ccc
Q 004164 72 ILVPGCGNSRLSEHLYDA---GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG-LDA 146 (771)
Q Consensus 72 ILDiGCG~G~ls~~La~~---g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~-l~~ 146 (771)
|||+|||+|..+..+++. +. .+++++|+|+.|++.++++....+.+++|++.|+.++++.+++||+|++.+. +++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999886 32 5999999999999999888876667999999999999988899999999554 888
Q ss_pred ccCcccchHHHHHHHHHHHHccccCe
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGG 172 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG 172 (771)
+...+ +..+++++.++|+|||
T Consensus 81 ~~~~~-----~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEE-----LEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHH-----HHHHHHHHHHTEEEEE
T ss_pred CCHHH-----HHHHHHHHHHHhCCCC
Confidence 66544 8899999999999998
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.3e-13 Score=140.40 Aligned_cols=107 Identities=18% Similarity=0.309 Sum_probs=92.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC-CCCCCccEEEecccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~-~~~~sFDlVi~~~~l 144 (771)
++.+|||+|||+|.++..|++.+. +|+++|+|+.+++.++++....+ ++++++++|+.+++ +.+++||+|++..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 567999999999999999999876 99999999999998887765443 57899999998874 567899999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+++.++. .++.++.++|||||++++..+...
T Consensus 123 ~~~~~~~-------~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 123 EWVADPK-------SVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HhhCCHH-------HHHHHHHHHcCCCeEEEEEEECcc
Confidence 9987654 899999999999999998876643
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-13 Score=143.09 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=88.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHH--HhhcCCCCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~--~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..++..|...|+|+|+|+.|+.++.. +......++.+..+++.+++.. .+||+|++.+++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 5678999999999999999988887789999999999976432 2222335788899999988764 589999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+.++. .+|++++++|+|||.+++.++.
T Consensus 199 ~H~~dp~-------~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 199 YHRKSPL-------EHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred hccCCHH-------HHHHHHHHhcCCCCEEEEEEEE
Confidence 9987654 8999999999999999998753
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.6e-13 Score=144.12 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=93.1
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHH--hhcCCCCcEEEEeecCCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~--~~~~~~~i~~~~~D~~~l~~~~~ 133 (771)
.+...+.. .++.+|||||||+|.++..++..|...|+|+|+|+.++.++... ......++.++.+|+.++++ ++
T Consensus 113 ~l~~~l~~---l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 113 RVLPHLSP---LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHhhCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 34445542 46789999999999999999999877899999999998765432 22223579999999999988 78
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+||+|++.++++|+.++. .+++++++.|+|||.+++.++
T Consensus 189 ~FD~V~s~~vl~H~~dp~-------~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPL-------DHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CcCEEEECChhhccCCHH-------HHHHHHHHhcCCCcEEEEEEE
Confidence 999999999999987644 899999999999999998764
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-13 Score=145.29 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||+|..+..|++.|+ +|+|+|+|+.+++.+++++...+.++++.+.|+...++ +++||+|++..+++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 346999999999999999999887 99999999999998887776666688999999987665 5789999999999987
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.... +..+++++.++|+|||+++++.
T Consensus 198 ~~~~-----~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 NRER-----IPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CHHH-----HHHHHHHHHHhcCCCcEEEEEE
Confidence 5433 6799999999999999977654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=149.64 Aligned_cols=108 Identities=22% Similarity=0.339 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||||||+|..+..|++....+|+|+|+|+.+++.++++......+++|.++|+.+.++++++||+|++.++++|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 46789999999999999999886334899999999999988776644446799999999999888889999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+.++. .++++++++|||||++++.++..
T Consensus 345 ~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 345 IQDKP-------ALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred cCCHH-------HHHHHHHHHcCCCeEEEEEEecc
Confidence 97644 89999999999999999998753
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=135.76 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc---CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~---g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
.++.+|||+|||+|..+..+++. +..+++++|+|+.|++.++++....+ .+++++++|+.+++++ .+|+|++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 36789999999999999888762 33599999999999999988875433 3799999999988764 59999999
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.+++++...+ ...++++++++|||||.|++.+.
T Consensus 133 ~~l~~l~~~~-----~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSE-----RQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHH-----HHHHHHHHHHhcCCCCEEEEEEe
Confidence 9999986543 56899999999999999999874
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=132.36 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||+|||+|..+..|+.. +..+++|+|+|+.+++.++++. +++.+.++|+.+ ++++++||+|++.++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 35679999999999999999886 4459999999999999886543 467889999988 88899999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+.... +.++++++.+++ ++++++.++-
T Consensus 117 hl~p~~-----~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 117 HINPDN-----LPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred hCCHHH-----HHHHHHHHHhhc--CcEEEEEEee
Confidence 985332 779999999998 4677777654
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.9e-10 Score=131.61 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=83.6
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+||.+|+|+|+++..+... +..+|++||+++..+++|++.+.+. ..++++++.+|..+|++...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~----------- 606 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAR----------- 606 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcC-----------
Confidence 478999999999999988876 3347999999999999999999432 22589999999999987642
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc-CCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC-PAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~-pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
.+||+||+|...-.....+.- ....=.-.+++..+.++|+|||++++-...
T Consensus 607 ---------------------~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 607 ---------------------EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred ---------------------CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 579999997532211100000 000001245778888999999999875433
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=137.70 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||+|||+|.++..|++.. ..+|+|+|+|+.|++.++++ +++++++|+.+++ ++++||+|++..+++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC-CCCCceEEEEehhhh
Confidence 577899999999999999998872 34899999999999877542 5889999998874 567999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++.+. ..++++++++|||||++++...
T Consensus 101 ~~~d~-------~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 101 WVPEH-------ADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hCCCH-------HHHHHHHHHhCCCCcEEEEEcC
Confidence 98754 4899999999999999998754
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=125.79 Aligned_cols=110 Identities=31% Similarity=0.511 Sum_probs=90.0
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~ 132 (771)
+.+.+..+... ..++.+|||+|||+|.++..|++.|+ +++++|+++.+++. ..+.....+....+.++
T Consensus 9 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~~ 76 (161)
T PF13489_consen 9 YADLLERLLPR--LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNVVFDNFDAQDPPFPD 76 (161)
T ss_dssp HHHHHHHHHTC--TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTSEEEEEECHTHHCHS
T ss_pred HHHHHHHHhcc--cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhhhhhhhhhhhhhccc
Confidence 34445555531 14788999999999999999988888 99999999998875 34556666555656678
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++||+|++..+++|+.++ ..+++++.++|||||++++.+...
T Consensus 77 ~~fD~i~~~~~l~~~~d~-------~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLPDP-------EEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SSEEEEEEESSGGGSSHH-------HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cchhhHhhHHHHhhcccH-------HHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999999999999999853 499999999999999999999764
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=132.84 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||||.++..+++....+|+|+|+|+.|++.++++ ..++++|+.++|+++++||+|++..+++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------DDKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------cceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 4689999999999999999887323899999999999977543 246789999999999999999999999988
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
.+. ++++++++|+|||. +++++++.
T Consensus 124 ~d~-------~~~l~e~~RvLkp~--~~ile~~~ 148 (226)
T PRK05785 124 DNI-------EKVIAEFTRVSRKQ--VGFIAMGK 148 (226)
T ss_pred CCH-------HHHHHHHHHHhcCc--eEEEEeCC
Confidence 764 48999999999994 33455543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=8e-12 Score=125.44 Aligned_cols=118 Identities=19% Similarity=0.091 Sum_probs=91.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.++++....+ .+++++++|+.+++. +++||+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 4789999999999999998874 44599999999999998877665544 459999999999876 679999998642
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh-ccCcEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 199 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~ 199 (771)
.+ ...+++.+.++|+|||++++.... +....+.... ..+|.+.
T Consensus 122 --~~-------~~~~l~~~~~~LkpGG~lv~~~~~--~~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 --AS-------LSDLVELCLPLLKPGGRFLALKGR--DPEEEIAELPKALGGKVE 165 (187)
T ss_pred --cC-------HHHHHHHHHHhcCCCeEEEEEeCC--ChHHHHHHHHHhcCceEe
Confidence 21 458999999999999999998754 3323333222 2388765
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=134.38 Aligned_cols=179 Identities=20% Similarity=0.272 Sum_probs=122.7
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHH--HHhhcCCCCcEEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML--RRNVRDRSDMRWRV 122 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~--~~~~~~~~~i~~~~ 122 (771)
||...+. -..+...+.. -.+.+|||||||+|..+..|+..|.+.|+|+|.++....+.. +++......+.+..
T Consensus 97 EWrSd~K--W~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp 171 (315)
T PF08003_consen 97 EWRSDWK--WDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP 171 (315)
T ss_pred cccccch--HHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC
Confidence 4654431 1234455533 478899999999999999999999989999999998887643 33322223344444
Q ss_pred eecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhc-chhhhhccCcEEEEe
Q 004164 123 MDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG-LLFPKFRFGWKMSVH 201 (771)
Q Consensus 123 ~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~-~l~~~~~~~w~~~~~ 201 (771)
.-+++++. .+.||+|++.|+|||..++- ..|.+++..|++||.+++-++.-+.-.. .+...-+..=+-.+.
T Consensus 172 lgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl-------~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~ 243 (315)
T PF08003_consen 172 LGVEDLPN-LGAFDTVFSMGVLYHRRSPL-------DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW 243 (315)
T ss_pred cchhhccc-cCCcCEEEEeeehhccCCHH-------HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE
Confidence 67888887 68999999999999999887 8899999999999999998875332211 222222222222344
Q ss_pred ecCCCCC-----CCCCCccEEEEEEEcCCccccccccccc
Q 004164 202 AIPQKSS-----SEPSLQTFMVVADKENSSVVLQVTSSFD 236 (771)
Q Consensus 202 ~i~~~~~-----~~~~l~~f~~v~~k~~~~~~l~~~~~~~ 236 (771)
.+++... .+..|....++....+....+..++|+.
T Consensus 244 FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~T~Wm~ 283 (315)
T PF08003_consen 244 FIPSVAALKNWLERAGFKDVRCVDVSPTTIEEQRKTDWMD 283 (315)
T ss_pred EeCCHHHHHHHHHHcCCceEEEecCccCCHHHhccCCCcC
Confidence 4443332 3455666777776666666677788854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=138.97 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++.++++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 35789999999999999888775 44589999999999998876542 3578999999999999889999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++.+.+ .++++++++|+|||+++++...
T Consensus 190 ~~~d~~-------~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 190 YWPDPQ-------RGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred hCCCHH-------HHHHHHHHhcCCCcEEEEEEec
Confidence 887644 8899999999999999887643
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=134.36 Aligned_cols=146 Identities=23% Similarity=0.358 Sum_probs=116.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 590 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-----g~~~~ 590 (771)
+.| +-|++++++..+ .+++++||||.|.|...+-...|-..-.|+.+|||..|+++.++|| |+ ++
T Consensus 105 ~~Y-qemi~~l~l~s~--------~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy-~~ 174 (337)
T KOG1562|consen 105 FAY-QEMIAHLALCSH--------PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY-EG 174 (337)
T ss_pred ccc-eeeeeccccccC--------CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc-CC
Confidence 556 668888888776 7899999999999988665555532348999999999999999999 54 78
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
+++.+++|||..|++..+ .+.|||||+|. +|+.. |...++...
T Consensus 175 ~~v~l~iGDG~~fl~~~~-------------------------------~~~~dVii~ds--sdpvg----pa~~lf~~~ 217 (337)
T KOG1562|consen 175 KKVKLLIGDGFLFLEDLK-------------------------------ENPFDVIITDS--SDPVG----PACALFQKP 217 (337)
T ss_pred CceEEEeccHHHHHHHhc-------------------------------cCCceEEEEec--CCccc----hHHHHHHHH
Confidence 999999999999999975 26799999965 44433 788999999
Q ss_pred HHHHHHHccCCCcEEEEEeccCChhHH----HHHHHHHHHhccc
Q 004164 671 FLLTVKDALSEQGLFIVNLVSRSQATK----DMVISRMKMVFNH 710 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv~Nl~~~~~~~~----~~v~~~l~~vF~~ 710 (771)
|++.+++.|+++|+.+..- .+-+++ +...+.-+.+|+.
T Consensus 218 ~~~~v~~aLk~dgv~~~q~--ec~wl~~~~i~e~r~~~~~~f~~ 259 (337)
T KOG1562|consen 218 YFGLVLDALKGDGVVCTQG--ECMWLHLDYIKEGRSFCYVIFDL 259 (337)
T ss_pred HHHHHHHhhCCCcEEEEec--ceehHHHHHHHHHHHhHHHhcCc
Confidence 9999999999999998653 333333 4445566677874
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-12 Score=130.97 Aligned_cols=107 Identities=23% Similarity=0.347 Sum_probs=92.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
...+|||+|||+|.++..+++.+. .+++++|+++.+++.++++.. +++.++.+|+.+.++++++||+|++..++++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQW 110 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhh
Confidence 347999999999999999988853 579999999999987876653 4789999999999988899999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
+.+. ..++.++.++|+|||.+++.++....+
T Consensus 111 ~~~~-------~~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 111 CDDL-------SQALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred ccCH-------HHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 8664 489999999999999999998765543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=129.56 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=89.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc---CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~---g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
.++.+|||+|||+|.++..+++. +..+++++|+|+.|++.++++..... .+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 36789999999999999999875 23589999999999998887764432 4689999999998765 58999999
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.+++++...+ ...++++++++|+|||.+++.+..
T Consensus 130 ~~l~~~~~~~-----~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 130 FTLQFLPPED-----RIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred cchhhCCHHH-----HHHHHHHHHHhcCCCeEEEEeecc
Confidence 9999986433 568999999999999999998753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.4e-12 Score=131.92 Aligned_cols=100 Identities=23% Similarity=0.355 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||||||+|.++..+++. +..+|+++|+|+.+++.++++. +++.++.+|+.++. ++++||+|++..+++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQ-PPQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccC-CCCCccEEEEccChh
Confidence 56789999999999999999886 3459999999999998876553 56899999998765 456999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++.+. ..+++++.++|+|||++++..
T Consensus 105 ~~~d~-------~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 105 WLPDH-------LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hCCCH-------HHHHHHHHHhcCCCcEEEEEC
Confidence 98754 489999999999999998864
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=127.10 Aligned_cols=118 Identities=23% Similarity=0.376 Sum_probs=97.9
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
++..+...+.. .++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++.....+++.+...|+.++++
T Consensus 7 ~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 7 YRARTFELLAV---QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC
Confidence 33445555543 578899999999999999998863 3689999999999998876633445689999999999888
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++++||+|++..+++++.+.. .+++++.++|+|||.+++.+..
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~-------~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPA-------RALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCceEEEEechhhccCCHH-------HHHHHHHHHhcCCcEEEEEecC
Confidence 889999999999999987644 8999999999999999988753
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=130.88 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=90.3
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~ 132 (771)
.+..++.+...+++.+|||||||-|.++..+++. |. +|+|+.+|+...+.++++....+ .++++...|..+++.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~-- 126 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG-- 126 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--
Confidence 4445555566689999999999999999999998 77 99999999999999988887666 468999999988753
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+||.|++-+++.|+.... ...+++++.++|+|||++++...+
T Consensus 127 -~fD~IvSi~~~Ehvg~~~-----~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 127 -KFDRIVSIEMFEHVGRKN-----YPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp -S-SEEEEESEGGGTCGGG-----HHHHHHHHHHHSETTEEEEEEEEE
T ss_pred -CCCEEEEEechhhcChhH-----HHHHHHHHHHhcCCCcEEEEEecc
Confidence 899999999999986544 779999999999999999976654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=132.29 Aligned_cols=107 Identities=18% Similarity=0.306 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.+++.....+ .++++..+|+.++++++++||+|++..+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 57899999999999988777665 43 479999999999998877654433 5789999999999988889999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++..+. ..+++++.++|||||+|++.++.
T Consensus 156 ~~~~~d~-------~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 156 INLSPDK-------ERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred ccCCCCH-------HHHHHHHHHHcCCCcEEEEEEee
Confidence 9887653 48999999999999999998764
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=142.71 Aligned_cols=112 Identities=19% Similarity=0.254 Sum_probs=91.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--CCCCCccEEEecccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--FMDETFDVILDKGGL 144 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l 144 (771)
++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.++++....+.++.++++|+.+++ +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 5789999999999999888875 3459999999999999988776544567888999999887 788999999999998
Q ss_pred ccccCc----c--cchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 145 DALMEP----E--LGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 145 ~~l~~~----~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|++.+. . .......++++++.++|||||++++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 875321 0 0112367999999999999999999874
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.1e-12 Score=122.61 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=91.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcE-EEEeecCCCC-CCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMR-WRVMDMTSMQ-FMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~-~~~~D~~~l~-~~~~sFDlVi~~~~ 143 (771)
.....+||+|||||..-..+-.....+||++|.++.|-+.+.+++++.. +++. |++++.++++ .+++++|+|++..+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 4556789999999999776654444599999999999998888876654 4666 9999999997 88999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|....++. +.|+++.|+|+|||++++++..
T Consensus 155 LCSve~~~-------k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 155 LCSVEDPV-------KQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EeccCCHH-------HHHHHHHHhcCCCcEEEEEecc
Confidence 99887654 9999999999999999999865
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.2e-12 Score=125.40 Aligned_cols=148 Identities=22% Similarity=0.293 Sum_probs=108.5
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC---CeEEEEcCCHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKVV 103 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~---~~V~~vDiS~~~ 103 (771)
.+.|||.+|.... ..| +.+..-+...+..++.... ++..+|||+|||.|.....+.+... -.|.++|+|+.+
T Consensus 35 ~~k~wD~fy~~~~--~rF--fkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~A 109 (264)
T KOG2361|consen 35 ASKYWDTFYKIHE--NRF--FKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA 109 (264)
T ss_pred hhhhhhhhhhhcc--ccc--cchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHH
Confidence 5679999998762 333 3333334344444544311 2334899999999999988877521 379999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEeecCCC----CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 104 ISDMLRRNVRDRSDMRWRVMDMTSM----QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 104 i~~~~~~~~~~~~~i~~~~~D~~~l----~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|+..++.....-.++...+.|++.. +.+.+++|+|.+..+|.++.... ...++++++++|||||.+++-+|
T Consensus 110 i~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-----~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 110 IELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-----MQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred HHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-----HHHHHHHHHHHhCCCcEEEEeec
Confidence 9876554332334566667777653 46779999999999999987655 88999999999999999999999
Q ss_pred Ccchh
Q 004164 180 AESHV 184 (771)
Q Consensus 180 ~~~~~ 184 (771)
+...+
T Consensus 185 g~~Dl 189 (264)
T KOG2361|consen 185 GRYDL 189 (264)
T ss_pred ccchH
Confidence 86553
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-11 Score=127.19 Aligned_cols=118 Identities=20% Similarity=0.335 Sum_probs=100.5
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~ 133 (771)
+...+.++...|+.+|||||||-|.++..+++. +. +|+|+++|+++.+.++++....+ .++++...|..+++ +
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e 136 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---E 136 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---c
Confidence 333444445589999999999999999999998 55 99999999999999998877666 36899999988874 4
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.||-|++-+++.|+.... ...+|+.++++|+|||++++.+...++
T Consensus 137 ~fDrIvSvgmfEhvg~~~-----~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 137 PFDRIVSVGMFEHVGKEN-----YDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ccceeeehhhHHHhCccc-----HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 599999999999997654 789999999999999999998887554
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=125.16 Aligned_cols=108 Identities=24% Similarity=0.369 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDlVi~~~ 142 (771)
.++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++++.... ..++.+..+|+.+.+++.++||+|++..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 467899999999999999998875 369999999999999887765432 3578999999999888788999999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++++.+. ..++.++.++|+|||++++.+...
T Consensus 130 ~l~~~~~~-------~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 130 GLRNVPDI-------DKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccccCCCH-------HHHHHHHHHhccCCcEEEEEEecC
Confidence 99887653 488999999999999999987653
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=125.32 Aligned_cols=131 Identities=16% Similarity=0.128 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec-CCCC--CCCCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM-TSMQ--FMDETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~-~~l~--~~~~sFDlVi~~~ 142 (771)
++.+|||+|||+|..+..+++. +..+|+++|+|+.+++.++++..... +++.++++|+ ..++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5789999999999999999876 34589999999999998887665443 6799999999 7665 7788999999865
Q ss_pred ccccccCccc-chHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh-ccCcEEE
Q 004164 143 GLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 199 (771)
Q Consensus 143 ~l~~l~~~~~-~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~ 199 (771)
...+...... .......++++++++|+|||+|++.+.....+. .+...+ ..+|...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE-YMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH-HHHHHHHhCccccc
Confidence 4433221110 000135889999999999999999876544433 333333 3466544
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.4e-11 Score=108.83 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=86.1
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC-CCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS-MQF 130 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~-l~~ 130 (771)
...+...+.. .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++...... .++.++..|+.. ++.
T Consensus 8 ~~~~~~~~~~---~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 8 RALTLSKLRL---RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence 3344444432 45679999999999999999987 34689999999999998876654432 578888888765 333
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..++||+|++.+.... ...+++++.++|+|||+|++..+
T Consensus 85 ~~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 85 SLPEPDRVFIGGSGGL----------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hcCCCCEEEECCcchh----------HHHHHHHHHHHcCCCCEEEEEec
Confidence 3468999998654332 45899999999999999998653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-11 Score=117.76 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++.....+ .+++++++|+.+++ .+++||+|++.. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 47899999999999999988664 3589999999999987765544433 46999999999874 357999999865 33
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+ ...+++.+.++|+|||++++..-
T Consensus 120 ~----------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 120 S----------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred C----------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 34788999999999999998753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=116.85 Aligned_cols=111 Identities=21% Similarity=0.296 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+.++++..+|+.+.. .++||+|+++..+++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 567899999999999999999877 8999999999999887776555567888999987653 4589999998877655
Q ss_pred cCccc--------------chHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 148 MEPEL--------------GHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 148 ~~~~~--------------~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
.+... +......++.++.++|+|||+++++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 43211 12236789999999999999999987653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=128.99 Aligned_cols=106 Identities=18% Similarity=0.173 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCcch----hHHHHHhcC------CCeEEEEcCCHHHHHHHHHHhhc------------------------
Q 004164 68 PPPQILVPGCGNSR----LSEHLYDAG------FHGITNVDFSKVVISDMLRRNVR------------------------ 113 (771)
Q Consensus 68 ~~~~ILDiGCG~G~----ls~~La~~g------~~~V~~vDiS~~~i~~~~~~~~~------------------------ 113 (771)
++.+|||+|||+|. ++..+++.+ ..+|+|+|+|+.||+.|++..-.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 445555531 13899999999999988764210
Q ss_pred ----CCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 114 ----DRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 114 ----~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
-..++.|.+.|+.+.+++.++||+|++..+++++..+. ..+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-----~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-----QRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-----HHHHHHHHHHHhCCCeEEEEEC
Confidence 01368999999999887788999999999999986544 6799999999999999999854
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-11 Score=111.35 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=84.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
..+||+||+|+|.++..+.+.+|..+|++||++|.+++.|++.+ .....++++++.+|+ .+....
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------------- 67 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------------- 67 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-------------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-------------
Confidence 46899999999999999999889999999999999999999998 223468999999999 432222
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+++...... + ...--...+|+.+++.|+|||+|+++.
T Consensus 68 -------------------~~~~D~v~~~~~~~~~---~---~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 -------------------LEPFDLVICSGFTLHF---L---LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -------------------SSCEEEEEECSGSGGG---C---CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCCCEEEECCCcccc---c---cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2569999995411100 0 000123578999999999999999974
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-11 Score=126.62 Aligned_cols=101 Identities=24% Similarity=0.412 Sum_probs=86.5
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC--------CcEEEEeecCCCCCCCCCccEEEe
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--------DMRWRVMDMTSMQFMDETFDVILD 140 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~--------~i~~~~~D~~~l~~~~~sFDlVi~ 140 (771)
+.+|||+|||+|.+++.|++.|. +|+|||+++.+|+.|++.. ...| ++.+.+.|++.+. +.||.|++
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~-~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHK-KMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhh-hcCchhccccceeeehhhcchhhcc---cccceeee
Confidence 47899999999999999999997 9999999999999888773 3322 3567777777753 45999999
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
..+++|+.++. .++..+.++|||||++++.+...
T Consensus 165 sevleHV~dp~-------~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 165 SEVLEHVKDPQ-------EFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHHhCHH-------HHHHHHHHHhCCCCceEeeehhh
Confidence 99999998765 89999999999999999998764
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-09 Score=122.80 Aligned_cols=130 Identities=15% Similarity=0.089 Sum_probs=93.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+-+|.||+|.|.....++...|+..+.+||+....+.-|-+...-..-.+++++.+|+..+.....
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~------------- 414 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP------------- 414 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC-------------
Confidence 3558999999999988899999999999999998877655444311112568888888765544443
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHH
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 701 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 701 (771)
+..+|.|.+-- +||..--.-.-..+++++||+.+.+.|+|||.+- +.+.+..+.+..+
T Consensus 415 ------------------~~sv~~i~i~F--PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~--~~TD~~~y~~~~~ 472 (506)
T PRK01544 415 ------------------NNSLDGIYILF--PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV--FASDIENYFYEAI 472 (506)
T ss_pred ------------------cccccEEEEEC--CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE--EEcCCHHHHHHHH
Confidence 35689998843 4443211223456999999999999999999887 4566777766666
Q ss_pred HHHHH
Q 004164 702 SRMKM 706 (771)
Q Consensus 702 ~~l~~ 706 (771)
..+.+
T Consensus 473 ~~~~~ 477 (506)
T PRK01544 473 ELIQQ 477 (506)
T ss_pred HHHHh
Confidence 66554
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-11 Score=122.93 Aligned_cols=107 Identities=21% Similarity=0.400 Sum_probs=90.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
.++++||.||.|+|..+.++...+| +.+|++||+||...++|+++| |+ +++++++.+||.+++.++...
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~~----- 116 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELAND----- 116 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHHT-----
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHhc-----
Confidence 3678999999999999999999887 479999999999999999998 55 579999999999999987621
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
.+...||+||+|++...+ .++|+.+.++|++||++++.
T Consensus 117 ----------------------~~~~~fD~VFiDa~K~~y-------------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 117 ----------------------GEEGQFDFVFIDADKRNY-------------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp ----------------------TTTTSEEEEEEESTGGGH-------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------------cCCCceeEEEEcccccch-------------hhHHHHHhhhccCCeEEEEc
Confidence 112579999999976543 78999999999999999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-12 Score=116.74 Aligned_cols=95 Identities=26% Similarity=0.343 Sum_probs=61.9
Q ss_pred EEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCCccEEEecccccccc
Q 004164 73 LVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALM 148 (771)
Q Consensus 73 LDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l~~l~ 148 (771)
||+|||+|.++..+.+. +..+++++|+|+.|++.++++..... ........+..+.. ...++||+|++..+++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999887 44599999999999987777765544 23444444444331 1225999999999999994
Q ss_pred CcccchHHHHHHHHHHHHccccCeEE
Q 004164 149 EPELGHKLGNQYLSEVKRLLKSGGKF 174 (771)
Q Consensus 149 ~~~~~~~~~~~~l~~i~rvLkpGG~~ 174 (771)
+ ...++++++++|+|||+|
T Consensus 81 ~-------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D-------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------HHHHHHHHTTT-TSS-EE
T ss_pred h-------HHHHHHHHHHHcCCCCCC
Confidence 3 569999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=120.02 Aligned_cols=114 Identities=25% Similarity=0.403 Sum_probs=95.3
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (771)
.+...+.. .++.+|||+|||+|..+..+++... .+++++|+++.+++.+.++.. ...++.+..+|+.+++++++
T Consensus 30 ~~~~~~~~---~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~ 105 (223)
T TIGR01934 30 RAVKLIGV---FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDN 105 (223)
T ss_pred HHHHHhcc---CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCC
Confidence 34444443 4678999999999999999988754 489999999999998877654 44579999999999888788
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+||+|++..+++++.+ ...+++++.++|+|||++++.++.
T Consensus 106 ~~D~i~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTD-------IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred cEEEEEEeeeeCCccc-------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999999998888765 348999999999999999998865
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-11 Score=120.36 Aligned_cols=101 Identities=20% Similarity=0.299 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.+..+|.|+|||+|..+..|+++ +...|+|+|-|+.||+.++++. ++++|..+|+.+.. ++..+|+++++.+|+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~-p~~~~dllfaNAvlq 103 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWK-PEQPTDLLFANAVLQ 103 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcC-CCCccchhhhhhhhh
Confidence 56789999999999999999998 5579999999999998886554 89999999999985 457899999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++++-. .+|..+...|.|||.+.+.-.
T Consensus 104 WlpdH~-------~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 104 WLPDHP-------ELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred hccccH-------HHHHHHHHhhCCCceEEEECC
Confidence 998755 899999999999999988653
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-11 Score=123.51 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=87.2
Q ss_pred eEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 71 QILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
+|||||||+|.++..+++.. ..+++++|+|+.+++.++++....+ .++++...|+...+++ ++||+|++..+++++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 79999999999999998873 3589999999999998887765433 5689999999777665 589999999999998
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.+ ...++++++++|+|||++++.++.
T Consensus 81 ~~-------~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 81 KD-------KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CC-------HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 65 349999999999999999998764
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.9e-11 Score=119.85 Aligned_cols=126 Identities=17% Similarity=0.315 Sum_probs=102.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEE-cchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHI-TDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i-~Dg~~~l~~~~~~~~~~ 614 (771)
..+++||.||.+.|.-+.++....| +.++++||+||+..+.|+++| |+ ++++.++. +|+++.+.+..
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal~~l~~~~------ 129 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDALDVLSRLL------ 129 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHHHHHHhcc------
Confidence 4678999999999999999999998 779999999999999999999 54 67899999 69999998732
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE-EeccCC
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLVSRS 693 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~-Nl~~~~ 693 (771)
...||+||+|++.+++ ++||+.+-++|+|||++|+ |+....
T Consensus 130 -------------------------~~~fDliFIDadK~~y-------------p~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 130 -------------------------DGSFDLVFIDADKADY-------------PEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred -------------------------CCCccEEEEeCChhhC-------------HHHHHHHHHHhCCCcEEEEeecccCC
Confidence 3679999999988854 8999999999999999997 554331
Q ss_pred ----h--hHHHHHHHHHHHhccce
Q 004164 694 ----Q--ATKDMVISRMKMVFNHL 711 (771)
Q Consensus 694 ----~--~~~~~v~~~l~~vF~~v 711 (771)
+ .-.+..+..+++.+..+
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
T COG4122 172 RVADPSIRDARTQVRGVRDFNDYL 195 (219)
T ss_pred ccCCccchhHHHHHHHHHHHHHHH
Confidence 2 23445566666666543
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8e-11 Score=131.18 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=88.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||||||+|.++..+++. |. +|+++|+|+.+++.++++.. +..+++...|..++ +++||+|++.++++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l---~~~fD~Ivs~~~~e 239 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL---NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc---CCCCCEEEEeCchh
Confidence 67899999999999999999886 55 89999999999998877763 33578888888765 47899999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
++.... ...+++++.++|||||++++.++..+
T Consensus 240 hvg~~~-----~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 240 HVGPKN-----YRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred hCChHH-----HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 885433 56899999999999999999887643
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=118.34 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=86.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~ 126 (771)
+.+...+.+.+.. .++.+|||+|||+|..+..+++. + .++|+++|+++.+++.++++....+ .+++++.+|+.
T Consensus 58 p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 58 PHMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 3444455555543 57889999999999999888875 2 3589999999999998877665444 35899999998
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+.....++||+|++..++.++ ..++.+.|+|||++++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchh-------------hHHHHHhcCcCcEEEEEE
Confidence 764456799999998776654 356889999999998754
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=115.79 Aligned_cols=120 Identities=22% Similarity=0.310 Sum_probs=91.8
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCC-eEEEEcCCHHHHHHHHHHhhcCCCC-cEEEEeecCCCCCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH-GITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQFMD 132 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~-~V~~vDiS~~~i~~~~~~~~~~~~~-i~~~~~D~~~l~~~~ 132 (771)
..|.+++.. .+..+|||+|||+|.++..++..+.. +|+++|+++.+++.+++........ ++++..|..+. .++
T Consensus 21 ~lL~~~l~~---~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~ 96 (170)
T PF05175_consen 21 RLLLDNLPK---HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPD 96 (170)
T ss_dssp HHHHHHHHH---HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCT
T ss_pred HHHHHHHhh---ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccc
Confidence 356666654 36789999999999999999998653 7999999999999887666555433 89999998764 347
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++||+|+++-.++.-. +.+....+.++.+..+.|+|||.++++...
T Consensus 97 ~~fD~Iv~NPP~~~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGG--DDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TCEEEEEE---SBTTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cceeEEEEccchhccc--ccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 8999999998766533 223345889999999999999999776654
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=120.27 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=86.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc----CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~----g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
.++.+|||+|||+|.++..|++. |. .+|+|+|+|+.|++.++++. ...++.+.+.+...+++++++||+|++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~--~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP--RRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc--ccCCCeEEEEecccccccCCCccEEEEC
Confidence 45689999999999999888752 32 48999999999999886654 2346888888888887778899999999
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
.+++|+.+++ ...+++++.++++ |.+++.++..+
T Consensus 137 ~~lhh~~d~~-----~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 137 HFLHHLDDAE-----VVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CeeecCChHH-----HHHHHHHHHHhcC--eeEEEeccccC
Confidence 9999997654 5689999999998 66677776644
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-10 Score=111.99 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=88.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (771)
.+..+..+...+.. .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+++.....+ .+++++.+|+..
T Consensus 16 ~~~~r~~~~~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 16 KEEVRALALSKLEL---HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred hHHHHHHHHHhcCC---CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence 34455556666654 467899999999999999998874 3589999999999998876554332 468899888743
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++ .++||+|++.+.... ...++..+.++|+|||++++....
T Consensus 93 -~~-~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 93 -EL-PGKADAIFIGGSGGN----------LTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred -hc-CcCCCEEEECCCccC----------HHHHHHHHHHhcCCCeEEEEEEec
Confidence 33 368999998765433 347899999999999999886543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=119.92 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=95.0
Q ss_pred HhhHHHHHhhcCCCCcc--ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHH
Q 004164 28 KENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (771)
Q Consensus 28 ~~yWd~~y~~~~~~~~~--ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~ 105 (771)
.+.|+..|.... -..+ .+...+......+..++......++.+|||+|||+|.++..|++.+. .|+++|+|+.+++
T Consensus 22 ~~~w~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~ 99 (230)
T PRK07580 22 FDRWARIYSDAP-VSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVE 99 (230)
T ss_pred cchHHHhhCcCc-hhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHH
Confidence 457888776531 1111 01122233344455555421124678999999999999999998876 7999999999999
Q ss_pred HHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeE
Q 004164 106 DMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 173 (771)
Q Consensus 106 ~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~ 173 (771)
.++++....+ .++.+..+|+. ..+++||+|++..+++++..+. ...+++++.+.+++++.
T Consensus 100 ~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 100 EARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVLIHYPQED-----AARMLAHLASLTRGSLI 161 (230)
T ss_pred HHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchhhcCCHHH-----HHHHHHHHHhhcCCeEE
Confidence 9987765444 37899998843 3468899999999998876544 66888888887754443
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=119.14 Aligned_cols=137 Identities=19% Similarity=0.276 Sum_probs=100.4
Q ss_pred HhhHHHHHhhcCCCCccccc-----cchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHH
Q 004164 28 KENWDKFFTIRGIGDSFEWY-----AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (771)
Q Consensus 28 ~~yWd~~y~~~~~~~~~ew~-----~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~ 102 (771)
...|+..|... ....|. .....+...+.+++.. ...++.+|||+|||+|.++..++..+. +|+|+|+|+.
T Consensus 14 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~ 88 (219)
T TIGR02021 14 FQRWARIYGSG---DPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQ 88 (219)
T ss_pred HHHHHHhhCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHH
Confidence 45787777643 112221 1122344456666652 114678999999999999999998766 8999999999
Q ss_pred HHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 103 VISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 103 ~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
+++.++++..... .++.|.++|+.+++ ++||+|++..+++++.... ...++.++.+++++++++.+.
T Consensus 89 ~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~-----~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 89 MVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASD-----MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHH-----HHHHHHHHHHHhCCCEEEEEC
Confidence 9999888775444 37899999998875 7899999999988875433 668899999999877665543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=116.78 Aligned_cols=114 Identities=13% Similarity=0.063 Sum_probs=89.5
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec
Q 004164 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM 125 (771)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~ 125 (771)
..+.+...+.+.+.. .++.+|||+|||+|.++..+++. +. ++|+++|+++.+++.++++....+ .+++++++|+
T Consensus 60 ~~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~ 136 (212)
T PRK13942 60 SAIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG 136 (212)
T ss_pred CcHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence 345555566666654 68899999999999999988876 32 589999999999998887765544 5799999999
Q ss_pred CCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 126 ~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.....+.+.||+|++.+.+.. +...+.+.|||||++++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~-------------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPD-------------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCccc-------------chHHHHHhhCCCcEEEEEE
Confidence 876656789999998765543 2356778999999988854
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-10 Score=116.50 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=96.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (771)
+++.+|||+|||+|.++..+++.. .+.|+++|+++ +. ..++++++++|+.+.+ +.+++||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 467899999999999999998873 25899999998 21 2357999999999853 6678999
Q ss_pred EEEeccccccccCcccc----hHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCCCCCCCCC
Q 004164 137 VILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPS 212 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~----~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~ 212 (771)
+|++..+.++...+..+ ......+++++.++|+|||.|++..+....+.+ ++......|.. +..+...+....+
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~-~l~~l~~~f~~-v~~~Kp~ssr~~s 197 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDE-YLREIRSLFTK-VKVRKPDSSRARS 197 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHH-HHHHHHhCceE-EEEECCccccccC
Confidence 99998776664432111 011367999999999999999998776544332 33444443433 2223334444445
Q ss_pred CccEEE
Q 004164 213 LQTFMV 218 (771)
Q Consensus 213 l~~f~~ 218 (771)
.+.|++
T Consensus 198 ~e~~~~ 203 (209)
T PRK11188 198 REVYIV 203 (209)
T ss_pred ceeEEE
Confidence 555554
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-10 Score=124.26 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=84.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC------CCCcEEEEeec
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMDM 125 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~------~~~i~~~~~D~ 125 (771)
.....+.+++......++.+|||+|||+|.++..|++.|. +|+++|+|+.|++.++++.... ..++.|.+.|+
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 4445556666431112568999999999999999999886 8999999999999988876543 24578889988
Q ss_pred CCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 126 ~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
.++ +++||+|++..+++|+++.. ...++..+.+ +.+||.++
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~-----~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDK-----ADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHH-----HHHHHHHHHh-hcCCEEEE
Confidence 664 47899999999998876543 4466666665 45555544
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=120.87 Aligned_cols=131 Identities=14% Similarity=0.203 Sum_probs=96.3
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHh--c-CCCeEEEEcCCHHHHHHHHHHhhc-C--CC
Q 004164 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD--A-GFHGITNVDFSKVVISDMLRRNVR-D--RS 116 (771)
Q Consensus 43 ~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~--~-g~~~V~~vDiS~~~i~~~~~~~~~-~--~~ 116 (771)
.|-+|..|..+.+.-...+......++.+|+|||||.|.++..+.. . ..++++++|+++.+++.+++.+.. . ..
T Consensus 98 ~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~ 177 (296)
T PLN03075 98 LFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSK 177 (296)
T ss_pred cCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccC
Confidence 3556777776665444444332123678999999998866544333 2 335899999999999988777633 2 35
Q ss_pred CcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 117 DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 117 ~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+++|..+|+.+..-..+.||+|++. +++++...+ ..++++++++.|+|||.+++-..
T Consensus 178 rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~-----k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 178 RMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEE-----KVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred CcEEEECchhhcccccCCcCEEEEe-ccccccccc-----HHHHHHHHHHhcCCCcEEEEecc
Confidence 7999999998864335789999999 777664333 56999999999999999999873
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=116.74 Aligned_cols=112 Identities=17% Similarity=0.086 Sum_probs=87.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (771)
+.....+.+++.. .++.+|||+|||+|.++..|++... ++|+++|+++.+++.+++++...+ .+++++++|+.+
T Consensus 63 p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 63 PHMVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 3344556666654 6789999999999999999988732 469999999999998887765544 579999999987
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.....++||+|+......+ +...+.+.|+|||++++..
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~-------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPK-------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCccc-------------ccHHHHHhcCcCcEEEEEE
Confidence 6444578999997665433 3456788999999998854
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-10 Score=116.22 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..++..+..+++++|+++.+++.+++.....+.++.++.+|+.+. +++++||+|+++.....
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCC
Confidence 46789999999999999999988766999999999999988766554445688899998763 45679999998753322
Q ss_pred ccC--------------cccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 147 LME--------------PELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 147 l~~--------------~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
... ...+....+.++.++.++||+||+++++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 111 0111223677899999999999999986543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.4e-10 Score=111.77 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=87.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (771)
.++......+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++....+ .++.++.+|+.+
T Consensus 27 ~~r~~~l~~l~~---~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 27 EIRALALSKLRL---RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHHcCC---CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 444444444443 67899999999999999988765 3 3589999999999998877665443 578999999876
Q ss_pred C-CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 128 M-QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 128 l-~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
. +...+.||+|++.+... . ...+++.+.++|+|||++++....
T Consensus 104 ~l~~~~~~~D~V~~~~~~~-----~-----~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 104 ILFTINEKFDRIFIGGGSE-----K-----LKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred hHhhcCCCCCEEEECCCcc-----c-----HHHHHHHHHHHcCCCcEEEEEeec
Confidence 4 32346899999854221 1 458899999999999999875443
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=122.71 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=101.3
Q ss_pred chhhhhhccCCC--CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCC--CCCCCCeEEEEcCCcchhHHHHHhcC
Q 004164 15 ATDLLQTLGDFT--SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAP--TSSPPPQILVPGCGNSRLSEHLYDAG 90 (771)
Q Consensus 15 ~~~lP~~~~~f~--~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~--~~~~~~~ILDiGCG~G~ls~~La~~g 90 (771)
++.||..+- |+ ..+-|++.+... ++|....+ ...+..+.... ...++.+|||+|||+|..+..|++..
T Consensus 14 ~k~lp~~~~-yd~~G~~lf~~i~~~p------eYy~tr~E-~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l 85 (301)
T TIGR03438 14 PKTLPPKYF-YDARGSELFEQICELP------EYYPTRTE-AAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDAL 85 (301)
T ss_pred CCCCCchhc-ccchHHHHHHHHHCCC------ccccHHHH-HHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhh
Confidence 356766663 33 245677765432 34543322 22222222210 01356799999999999999998873
Q ss_pred --CCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCC-CCCCCC----CccEEEeccccccccCcccchHHHHHHH
Q 004164 91 --FHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTS-MQFMDE----TFDVILDKGGLDALMEPELGHKLGNQYL 161 (771)
Q Consensus 91 --~~~V~~vDiS~~~i~~~~~~~~~~~~~--i~~~~~D~~~-l~~~~~----sFDlVi~~~~l~~l~~~~~~~~~~~~~l 161 (771)
..+|+++|+|+.|++.++++.....+. +.++++|+.+ +++... ...+++...+++++...+ ...+|
T Consensus 86 ~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e-----~~~~L 160 (301)
T TIGR03438 86 RQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEE-----AVAFL 160 (301)
T ss_pred ccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHH-----HHHHH
Confidence 248999999999999998887655544 6678999987 344332 233555556777775444 67999
Q ss_pred HHHHHccccCeEEEEEEc
Q 004164 162 SEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 162 ~~i~rvLkpGG~~ii~~~ 179 (771)
++++++|+|||.|++...
T Consensus 161 ~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 161 RRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred HHHHHhcCCCCEEEEecc
Confidence 999999999999987553
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.4e-10 Score=114.68 Aligned_cols=138 Identities=18% Similarity=0.098 Sum_probs=96.6
Q ss_pred CCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHH
Q 004164 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (771)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i 104 (771)
|-...||+..|......-...-+-..+.+...+..++.. .++.+|||+|||+|..+..|+.... +++++|+++.++
T Consensus 38 f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~ 113 (212)
T PRK00312 38 FVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQ 113 (212)
T ss_pred cCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHH
Confidence 444456666666542111111112234555566666654 6789999999999999998887753 899999999999
Q ss_pred HHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 105 SDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 105 ~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+.+++++...+ .++++..+|+.+...+.++||+|++...+.+ +...+.+.|+|||++++...
T Consensus 114 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 114 WEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE-------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-------------hhHHHHHhcCCCcEEEEEEc
Confidence 98877765443 4689999998664333478999998765543 34567899999999988754
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.9e-10 Score=115.34 Aligned_cols=122 Identities=17% Similarity=0.264 Sum_probs=88.1
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~ 123 (771)
.|......+...+..-+......++.+|||+|||+|.++..+++. +.+.|+++|+++.|++.+.+++.. ..++.++.+
T Consensus 49 ~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-~~nv~~i~~ 127 (226)
T PRK04266 49 EWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-RKNIIPILA 127 (226)
T ss_pred EECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-cCCcEEEEC
Confidence 355554555555554222233468899999999999999999886 345899999999999977666533 378999999
Q ss_pred ecCCC----CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 124 DMTSM----QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 124 D~~~l----~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
|+.+. ++. ++||+|+... ..+. ....++.+++++|||||++++.
T Consensus 128 D~~~~~~~~~l~-~~~D~i~~d~-----~~p~----~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 128 DARKPERYAHVV-EKVDVIYQDV-----AQPN----QAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCCCcchhhhcc-ccCCEEEECC-----CChh----HHHHHHHHHHHhcCCCcEEEEE
Confidence 98752 223 5699999532 2221 1346789999999999999993
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-10 Score=122.41 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=92.0
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM 128 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~----~~i~~~~~D~~~l 128 (771)
...+.+.+.. ....+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+++...... .++++...|+.+.
T Consensus 217 trllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 4567777754 345799999999999999998874 4599999999999998876654333 3678888888653
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++.++||+|+++-.+|...... .....+++..++++|+|||.++++..
T Consensus 294 -~~~~~fDlIlsNPPfh~~~~~~--~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 294 -VEPFRFNAVLCNPPFHQQHALT--DNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred -CCCCCEEEEEECcCcccCccCC--HHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 3456899999988777542111 12367899999999999999999864
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-10 Score=105.15 Aligned_cols=111 Identities=24% Similarity=0.342 Sum_probs=86.7
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--CCCCCccEEEecccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--FMDETFDVILDKGGL 144 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l 144 (771)
+.+|||+|||+|.++..+++.+..+++++|+++.+++.++....... .+++++++|+.+.. +++++||+|+.+-..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 46899999999999999999885599999999999998776665443 57999999998875 778999999998777
Q ss_pred ccccCc-ccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 145 DALMEP-ELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 145 ~~l~~~-~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
...... .........+++++.++|+|||.++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 643221 11223467899999999999999998763
|
... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=112.44 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=117.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||.|.|.++.+|....+.++|++|||++.+.+.|++...+. ..+|++|+.+|--+|.+...
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~---------- 112 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV---------- 112 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc----------
Confidence 4578999999999999999999988899999999999999999998663 47899999999999977654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCC-cCCcC---------cccHHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAAD---------FVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s-~pp~~---------f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||+||+. .+-...+-. |+.+. ..-+++++.++.+|+|+|.|.+=
T Consensus 113 ---------------------~~~fD~Ii~N--PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 113 ---------------------FASFDLIICN--PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred ---------------------ccccCEEEeC--CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 2469999983 332222222 44432 44588999999999999999853
Q ss_pred eccCChhHHHHHHHHHHH-hcc---ceEEee-ecCCccEEEEEecCCC
Q 004164 689 LVSRSQATKDMVISRMKM-VFN---HLFCLQ-LEEDVNLVLFGLSSES 731 (771)
Q Consensus 689 l~~~~~~~~~~v~~~l~~-vF~---~v~~~~-~~~~~N~Vl~a~~~~~ 731 (771)
.|... ...++..|++ -|. -++.++ .+...|.||+......
T Consensus 170 --~r~er-l~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 170 --HRPER-LAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred --ecHHH-HHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 35444 3457888887 444 233333 3556889988866553
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-10 Score=114.91 Aligned_cols=116 Identities=15% Similarity=0.144 Sum_probs=87.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDlVi~~~ 142 (771)
...+|||||||+|.++..++.. +..+++|+|+++.+++.++++....+ .+++++++|+.+++ ++++++|.|+...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999987 34589999999999998877664433 58999999998753 5567999999875
Q ss_pred ccccccCccc-chHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 143 GLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 143 ~l~~l~~~~~-~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
...+...... ..-....++++++++|||||.+++.+.....
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~ 137 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL 137 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 4433221100 0001257899999999999999998866443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=118.64 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.+..+|||||||+|.++..+++.. ..+++++|. +.+++.++++....+ .+++++.+|+.+.+++ .+|+|+...+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh
Confidence 567899999999999999998873 358999997 788988776655443 5799999999876665 3799999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+..+.. ..++++++++.|+|||++++.++.
T Consensus 225 lh~~~~~~-----~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 225 LYSANEQL-----STIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhcCChHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 98765433 568999999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.7e-10 Score=115.12 Aligned_cols=106 Identities=23% Similarity=0.316 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-CCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-FMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.......+.+...|+.+.+ ..+++||+|++..+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4678999999999999999988876 8999999999999887766544456788888887764 3457999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+..+. ..+++.+.++|+|||++++....
T Consensus 126 ~~~~~-------~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HVPDP-------ASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccCCH-------HHHHHHHHHHcCCCcEEEEEecC
Confidence 88764 38899999999999999987654
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=108.33 Aligned_cols=124 Identities=22% Similarity=0.328 Sum_probs=96.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-CCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQFM 131 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~-l~~~ 131 (771)
....-++++..+. ....-|||||||+|..+..|.+.|. ..+|+|||+.|++.+.++-.+ -.++.+||-. +||.
T Consensus 36 m~eRaLELLalp~-~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e----gdlil~DMG~Glpfr 109 (270)
T KOG1541|consen 36 MAERALELLALPG-PKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE----GDLILCDMGEGLPFR 109 (270)
T ss_pred HHHHHHHHhhCCC-CCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh----cCeeeeecCCCCCCC
Confidence 3444455554421 2467899999999999999999996 899999999999988764322 4677888854 6999
Q ss_pred CCCccEEEeccccccccCcccc----hHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 132 DETFDVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~~~----~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
.++||-+|+..++.|+.+.+.. ...+..++..++.+|++|++.++.-|...
T Consensus 110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 9999999999999888764422 12377889999999999999999887643
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=116.42 Aligned_cols=104 Identities=16% Similarity=0.291 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..++..|..+|+++|+++.+++.+++.....+ ..+.+...+.. +..+++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCH
Confidence 3678999999999999999988887799999999999998877654433 23555555532 3346789999987543
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+. +..++.++.++|+|||+++++.+...
T Consensus 236 ~~----------l~~ll~~~~~~LkpgG~li~sgi~~~ 263 (288)
T TIGR00406 236 EV----------IKELYPQFSRLVKPGGWLILSGILET 263 (288)
T ss_pred HH----------HHHHHHHHHHHcCCCcEEEEEeCcHh
Confidence 32 45889999999999999999887643
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-10 Score=117.15 Aligned_cols=107 Identities=15% Similarity=0.265 Sum_probs=90.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
..+++||.||.|+|..+.++....| ..+|+++|+||+..++|+++| |+ .++++++.||+.+++.+...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~L~~l~~------ 188 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAESLKSMIQ------ 188 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh------
Confidence 4578999999999999998888765 558999999999999999999 65 46899999999999987631
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
......||+||+|.+.... .++++.+.++|++||+++++
T Consensus 189 ---------------------~~~~~~FD~VFIDa~K~~Y-------------~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 189 ---------------------NGEGSSYDFAFVDADKRMY-------------QDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred ---------------------cccCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCcEEEEe
Confidence 0112579999999876532 88999999999999999975
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=118.76 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=104.8
Q ss_pred CCCCHhhHHHHHhhcC-----CCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEE
Q 004164 24 DFTSKENWDKFFTIRG-----IGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNV 97 (771)
Q Consensus 24 ~f~~~~yWd~~y~~~~-----~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~v 97 (771)
.|...+||.. |.... ....|.|-. ...-...+...+.. ....+|||+|||+|.++..+++.. ..+|+++
T Consensus 152 ~~~~~~~~~~-y~~~~l~i~~~pgvFs~~~-lD~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~v 226 (342)
T PRK09489 152 VFDADKFWKE-YQVDGLTVKTLPGVFSRDG-LDVGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLS 226 (342)
T ss_pred CCccccccee-eecCCEEEEeCCCCCCCCC-CCHHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEE
Confidence 3666677764 33221 123344422 22333456666653 345689999999999999999874 3589999
Q ss_pred cCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 98 DiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
|+|+.+++.+++.....+...++...|+... .+++||+|+++..+|..... .......++.++.+.|+|||.++++
T Consensus 227 Dis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~--~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 227 DVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDGIQT--SLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred ECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCCccc--cHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 9999999988777665555567788887653 35789999999888864322 1234679999999999999999988
Q ss_pred EcC
Q 004164 178 TLA 180 (771)
Q Consensus 178 ~~~ 180 (771)
...
T Consensus 303 an~ 305 (342)
T PRK09489 303 ANA 305 (342)
T ss_pred EeC
Confidence 754
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=115.86 Aligned_cols=149 Identities=12% Similarity=0.129 Sum_probs=103.9
Q ss_pred CCCcEEEEecccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC--CCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg--~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+.+|+.||+|.| +...+++.++|..+++++|+||++++.||+++. ..-.++++++.+|+.+....
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---------- 192 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---------- 192 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc----------
Confidence 6789999999966 444455678899999999999999999999993 22367999999999885211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
..+||+|++++--. +.-+ --.++|+.+.+.|+|||+|++-....-..+
T Consensus 193 -----------------------l~~FDlVF~~ALi~-----~dk~----~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~ 240 (296)
T PLN03075 193 -----------------------LKEYDVVFLAALVG-----MDKE----EKVKVIEHLGKHMAPGALLMLRSAHGARAF 240 (296)
T ss_pred -----------------------cCCcCEEEEecccc-----cccc----cHHHHHHHHHHhcCCCcEEEEecccchHhh
Confidence 14699999985111 1000 128899999999999999998763222222
Q ss_pred HHH-HHHHHHHhccceEEeeecCC-ccEEEEEecCCC
Q 004164 697 KDM-VISRMKMVFNHLFCLQLEED-VNLVLFGLSSES 731 (771)
Q Consensus 697 ~~~-v~~~l~~vF~~v~~~~~~~~-~N~Vl~a~~~~~ 731 (771)
... +-...-+-|..+..+...++ +|.|+|+.+...
T Consensus 241 LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~~ 277 (296)
T PLN03075 241 LYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGG 277 (296)
T ss_pred cCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeecC
Confidence 111 11222236776666665544 589999988653
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-09 Score=117.98 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=94.9
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF 130 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~ 130 (771)
.+...+..+... .++.+|||+|||+|.++..++..+. +++|+|+++.|+..+++.+...+ .++.+.++|+.++++
T Consensus 169 ~la~~~~~l~~~---~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~ 244 (329)
T TIGR01177 169 KLARAMVNLARV---TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHHHHhCC---CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc
Confidence 344455555443 5788999999999999988777666 89999999999997766654333 457899999999988
Q ss_pred CCCCccEEEeccccccccC--cccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 131 MDETFDVILDKGGLDALME--PELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~--~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.+++||+|+++-....... ..........++.++.++|+|||++++.......
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 8889999998644322111 0111133679999999999999999988765433
|
This family is found exclusively in the Archaea. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.4e-10 Score=113.58 Aligned_cols=105 Identities=25% Similarity=0.373 Sum_probs=88.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC-CcEEEEeecCCCCCC-CCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQFM-DETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~-~i~~~~~D~~~l~~~-~~sFDlVi~~~~l~ 145 (771)
.+.+|||+|||+|.++..+++.+. +++++|+++.+++.++++...... ++++...|+.+.+.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 478999999999999999988776 799999999999988777655444 688999998877644 37899999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+..++ ..++.++.++|+|||.+++.+..
T Consensus 124 ~~~~~-------~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 124 HVPDP-------QAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hCCCH-------HHHHHHHHHhcCCCcEEEEEecC
Confidence 88764 48999999999999999887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.9e-09 Score=104.97 Aligned_cols=140 Identities=18% Similarity=0.191 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (771)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+ ..+++.++++|+.+.+ ++.++||
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 578999999999999999888763 3579999999843 1256889999987643 4567899
Q ss_pred EEEecccccccc----CcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhcc-CcEEEEeecCCCCCCCC
Q 004164 137 VILDKGGLDALM----EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKMSVHAIPQKSSSEP 211 (771)
Q Consensus 137 lVi~~~~l~~l~----~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~-~w~~~~~~i~~~~~~~~ 211 (771)
+|++.++.+... +........+.++.++.++|+|||++++..+..+.+. .++..... .|...+.. ...+...
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~-~~l~~l~~~~~~~~~~~--~~~~~~~ 177 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEID-EYLNELRKLFEKVKVTK--PQASRKR 177 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHH-HHHHHHHhhhceEEEeC--CCCCCcc
Confidence 999876432111 1000011246899999999999999998765433332 23333322 33344332 2223344
Q ss_pred CCccEEEE
Q 004164 212 SLQTFMVV 219 (771)
Q Consensus 212 ~l~~f~~v 219 (771)
.-+.|.+.
T Consensus 178 ~~~~~~~~ 185 (188)
T TIGR00438 178 SAEVYIVA 185 (188)
T ss_pred cceEEEEE
Confidence 55556553
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=113.54 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.+.+|||+|||+|.++..++.. +..+++++|+++.+++.+++.....+ .++.++++|+.+ ++++++||+|+++-...
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 4569999999999999999987 33589999999999998877665433 368999999977 45678999999864433
Q ss_pred cccCc-------------------ccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 146 ALMEP-------------------ELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 146 ~l~~~-------------------~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..... ..+......++.++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 21100 0011224578999999999999988864
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=114.77 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhh-cCCCCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~-~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..++... ..+++++|+|+.+++.+++... ....++.++.+|+.+. +.+++||+|+++-..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCc
Confidence 467899999999999999998874 4689999999999998876654 2335799999998653 335789999985322
Q ss_pred cc-------------------ccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 145 DA-------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 145 ~~-------------------l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.. +....++......++.++.++|+|||++++..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 11 11111223346889999999999999998854
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-09 Score=113.13 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=91.7
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~ 122 (771)
.|......+...+..-+......++.+|||+|||+|.++..+++. + ...|+++|+++.+++.+.+.+. ..+++.++.
T Consensus 109 ~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~ 187 (293)
T PTZ00146 109 VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPII 187 (293)
T ss_pred eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEE
Confidence 366666666656655555555578899999999999999999987 3 3689999999988877766553 337899999
Q ss_pred eecCCC---CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 123 MDMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 123 ~D~~~l---~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
.|+... .+..++||+|++... .+ + ..+.++.+++++|||||.|++.
T Consensus 188 ~Da~~p~~y~~~~~~vDvV~~Dva---~p--d----q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 188 EDARYPQKYRMLVPMVDVIFADVA---QP--D----QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCccChhhhhcccCCCCEEEEeCC---Cc--c----hHHHHHHHHHHhccCCCEEEEE
Confidence 998642 223468999997653 12 2 1456677899999999999984
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=112.73 Aligned_cols=108 Identities=16% Similarity=0.288 Sum_probs=87.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
..+.+||.||+|+|+.+.++....+ ..+|+++|+||..+++|+++| |+ +++++++.+|+.+++.+...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~L~~l~~------ 138 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSALDQLLN------ 138 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHHHHHHHh------
Confidence 4578999999999988777777654 579999999999999999998 54 47899999999999987641
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE-Ee
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NL 689 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~-Nl 689 (771)
......||+|++|++.... ..+++.+.++|+|||++++ |+
T Consensus 139 ---------------------~~~~~~fD~VfiDa~k~~y-------------~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 139 ---------------------NDPKPEFDFAFVDADKPNY-------------VHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred ---------------------CCCCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCeEEEEEcC
Confidence 0012579999999865422 5789999999999999986 44
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=112.68 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=90.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
..+++||.||.+.|..+.++....| ..+|+++|+||...++|+++| |+ .+++++++||+.++|.++...
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~L~~l~~~----- 150 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPVLDQMIED----- 150 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHHHHHHHhc-----
Confidence 4678999999999988888877664 679999999999999999999 55 579999999999999986510
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE-Eec
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLV 690 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~-Nl~ 690 (771)
......||+||+|++...+ ..+|+.+.++|++||++++ |+.
T Consensus 151 ---------------------~~~~~~fD~iFiDadK~~Y-------------~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 151 ---------------------GKYHGTFDFIFVDADKDNY-------------INYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred ---------------------cccCCcccEEEecCCHHHh-------------HHHHHHHHHhcCCCeEEEEcCCC
Confidence 0012579999999875532 7899999999999999986 443
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-09 Score=113.40 Aligned_cols=111 Identities=19% Similarity=0.127 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
+..+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .+++++++|+.+. +++++||+|+++-..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCC
Confidence 45799999999999999999873 3589999999999998877665443 4689999998652 345689999986221
Q ss_pred ------cccc------------CcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 145 ------DALM------------EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 145 ------~~l~------------~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..+. ..+++......++.++.++|+|||++++..-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 1112234468899999999999999887653
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-09 Score=98.31 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=85.5
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+||++|+|+|.+...+.... ..++++||+||..+++|+..+... .+++++++++|..++.+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~------------- 67 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP------------- 67 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-------------
Confidence 479999999999999999887 679999999999999999998432 25689999999999875443
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+.|..-.... +. -....-....|++.+.++|+|+|++++-+
T Consensus 68 ------------------~~~~D~Iv~npP~~~~~-~~-~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 68 ------------------DGKFDLIVTNPPYGPRS-GD-KAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ------------------TT-EEEEEE--STTSBT-T-----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CceeEEEEECCCCcccc-cc-chhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 37899999976332110 00 01112255799999999999999999865
|
... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=117.89 Aligned_cols=111 Identities=11% Similarity=0.057 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC-CCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF-MDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~-~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|.++..++.. +..+++++|+|+.+++.+++.....+.+++++++|+.+..+ ..++||+|+++-...
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 4569999999999999998875 44589999999999998877765555679999999976433 246899999865321
Q ss_pred ------------------cccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 146 ------------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 146 ------------------~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++...+++....+.++..+.+.|+|||.+++..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 111122233447799999999999999987643
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-09 Score=117.87 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=91.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC--CCCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--QFMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--~~~~~sFDlVi~~~ 142 (771)
..+..+||||||+|..+..++.. +..+++|+|+++.+++.+.++....+ .++.++++|+..+ .++++++|.|+...
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 45679999999999999999987 34689999999999999988775544 6899999999765 57889999999865
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
...|..... ..-....++.+++|+|+|||.+.+.+-..+.+
T Consensus 201 PdPW~KkrH-RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 201 PVPWDKKPH-RRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred CCCccccch-hhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 544422111 00013589999999999999999988775544
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=107.82 Aligned_cols=96 Identities=23% Similarity=0.333 Sum_probs=79.9
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDE 133 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~ 133 (771)
.+.+++. |+.+|||+|||.|.+..+|.+....+..|+|+++..+..+.++ .+.++++|+.+- .|+++
T Consensus 6 ~I~~~I~-----pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 6 IIAEWIE-----PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HHHHHcC-----CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCCC
Confidence 4667774 7899999999999999999886434899999999888766543 478899999874 59999
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccc
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 169 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLk 169 (771)
+||.|+.+.+|.++..++ .+|.++.|+-+
T Consensus 75 sFD~VIlsqtLQ~~~~P~-------~vL~EmlRVgr 103 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRPD-------EVLEEMLRVGR 103 (193)
T ss_pred CccEEehHhHHHhHhHHH-------HHHHHHHHhcC
Confidence 999999999999998776 88888877733
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=103.17 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=86.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC-
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS- 127 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~- 127 (771)
......+..++.. .++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++....+ .+++++.+|+.+
T Consensus 26 ~~v~~~l~~~l~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRL---EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH
Confidence 3455556666653 57789999999999999999865 33589999999999998876654333 578999999865
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
++.....+|.|+..+. .. ...++.++.++|+|||++++......
T Consensus 103 ~~~~~~~~d~v~~~~~------~~-----~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 103 LAQLAPAPDRVCIEGG------RP-----IKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred HhhCCCCCCEEEEECC------cC-----HHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 2222234677654221 11 46899999999999999999887643
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.8e-09 Score=103.45 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC-C--cEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-D--MRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~-~--i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.++.+|||+|||+|.++..++..+. +++++|+|+.+++.+++.....+. + +.++..|+.+. +.+.+||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCC
Confidence 4678999999999999999998864 999999999999988766544332 2 88999998763 45568999998765
Q ss_pred cccccC--------------cccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALME--------------PELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~--------------~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+..... ...+......+++++.++|+|||.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 432110 0011223567899999999999998877543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=117.82 Aligned_cols=120 Identities=23% Similarity=0.267 Sum_probs=90.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc-------CC----CCcEEEEeecCCCC----CCC
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------DR----SDMRWRVMDMTSMQ----FMD 132 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~-------~~----~~i~~~~~D~~~l~----~~~ 132 (771)
++.+|||+|||.|.....+...+...++|+|+++..|+++++|+.. .. -...|+.+|..... +.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7899999999999999888888888999999999999999999821 11 23567777776431 333
Q ss_pred --CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhh
Q 004164 133 --ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 190 (771)
Q Consensus 133 --~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~ 190 (771)
..||+|-+-.++|+....+. .++.+|.++...|+|||+||.++.....+...+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~---~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEE---KARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHH---HHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred cCCCcceeehHHHHHHhcCCHH---HHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 59999999999999886553 48899999999999999999999886666444433
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-09 Score=111.42 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~--~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.....+- .+.+ +..+.+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~--------~~~~~~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYL--------PQGDLKADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEE--------ccCCCCcCEEEEcCcH
Confidence 36789999999999999988888876799999999999988776644332 1221 1112379999986432
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+. ...++.++.++|||||++++..+..
T Consensus 190 ~~----------~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 190 NP----------LLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred HH----------HHHHHHHHHHhcCCCcEEEEEECcH
Confidence 21 4588999999999999999987653
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-09 Score=113.75 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=98.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---C----CcEEEEeecCC------CCCCCC
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---S----DMRWRVMDMTS------MQFMDE 133 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~----~i~~~~~D~~~------l~~~~~ 133 (771)
+++..+|++|||-|......-++|...++++||++..|+++++|+.... . .+.|+++|... +++++.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 4789999999999999998888899999999999999999999876432 1 36788998865 245666
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhh
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 190 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~ 190 (771)
+||+|-+-.++|+....+ ..++.+|.++.+.|+|||+||-+....+.+...+-.
T Consensus 196 ~fDivScQF~~HYaFete---e~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETE---ESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred CcceeeeeeeEeeeeccH---HHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence 799999999999866544 238899999999999999999888776666555444
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.8e-09 Score=112.66 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=82.1
Q ss_pred CeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc---
Q 004164 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG--- 143 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~--- 143 (771)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .++.++++|+.+ +++..+||+|+++-.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 699999999999999999874 3589999999999998876654433 349999999876 344458999998621
Q ss_pred ----------cc-----cccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 144 ----------LD-----ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 144 ----------l~-----~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+. ++...+++....+.++.++.++|+|||++++..-
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11 1111222334588999999999999999887553
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6e-09 Score=110.48 Aligned_cols=125 Identities=17% Similarity=0.252 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~--i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++...++.|...++|+|++|.+++.+++....++-. +.....+....+ ..+.||+|+++=..
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANILA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANILA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehhhH
Confidence 378999999999999999999999989999999999999887765444422 223333333322 23699999986533
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh-ccCcEEEEeec
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAI 203 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~i 203 (771)
+- +..+...+.+.|||||+++++-....+ .+.....+ ..+|.+.-...
T Consensus 240 ~v----------l~~La~~~~~~lkpgg~lIlSGIl~~q-~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 240 EV----------LVELAPDIKRLLKPGGRLILSGILEDQ-AESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred HH----------HHHHHHHHHHHcCCCceEEEEeehHhH-HHHHHHHHHhCCCeEeEEEe
Confidence 22 568999999999999999999876554 33333444 45666654443
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.5e-09 Score=112.12 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=82.0
Q ss_pred CeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc--
Q 004164 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL-- 144 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l-- 144 (771)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .+++++++|+.+. +++++||+|+++-..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999999998873 4589999999999998877665443 4699999998652 345689999986211
Q ss_pred ----cc------------ccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 145 ----DA------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 145 ----~~------------l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.. +...+++......++.++.++|+|||++++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 10 111122334578999999999999999988543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-09 Score=107.23 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-C-CCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-M-QFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~-l-~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|.++..+++....+++++|+|+.+++.+.+ .+++++++|+.+ + ++++++||+|++..+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 567999999999999999987644478999999999987643 247889999876 4 46778999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHcccc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKS 170 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkp 170 (771)
++.++. .+++++.+.+++
T Consensus 87 ~~~d~~-------~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 ATRNPE-------EILDEMLRVGRH 104 (194)
T ss_pred cCcCHH-------HHHHHHHHhCCe
Confidence 987644 788888887664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.8e-09 Score=96.28 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=82.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||+||+|.|.++..+...+|..+|++||+++.+++.|++++....-++++++.+|+..++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 85 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS-------------- 85 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh--------------
Confidence 458999999999999999999888899999999999999998763222246899989877543322
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
..+||+|+++.. ... ..++++.+.+.|+|||.|++++.
T Consensus 86 ------------------~~~~D~v~~~~~-----------~~~--~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 ------------------LPEPDRVFIGGS-----------GGL--LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ------------------cCCCCEEEECCc-----------chh--HHHHHHHHHHHcCCCCEEEEEec
Confidence 147999999431 111 25899999999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=102.94 Aligned_cols=146 Identities=13% Similarity=0.128 Sum_probs=100.0
Q ss_pred hHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEE
Q 004164 517 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH 596 (771)
Q Consensus 517 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~ 596 (771)
-+++.++..+.+.. .+ +.+.+||+||+|+|.++..+....|..+|++||+++.+++.|++...-..-++++++
T Consensus 28 ~~~~~~~d~l~l~~-~l------~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 28 LWERHILDSLAIAP-YL------PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHh-hc------CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 35566655544432 12 235789999999999999888888889999999999999999987622111339999
Q ss_pred EcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHH
Q 004164 597 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK 676 (771)
Q Consensus 597 i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~ 676 (771)
.+|+.++-. ..+||+|++.... . -..+++.+.
T Consensus 101 ~~d~~~~~~----------------------------------~~~fDlV~~~~~~-----~---------~~~~l~~~~ 132 (187)
T PRK00107 101 HGRAEEFGQ----------------------------------EEKFDVVTSRAVA-----S---------LSDLVELCL 132 (187)
T ss_pred eccHhhCCC----------------------------------CCCccEEEEcccc-----C---------HHHHHHHHH
Confidence 999877411 2579999985311 0 167999999
Q ss_pred HccCCCcEEEEEeccCChhHHHHHHHHHHHhccceEEeeec
Q 004164 677 DALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLE 717 (771)
Q Consensus 677 ~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~ 717 (771)
+.|+|||.|++-...........+...+.-.-..+|.+.++
T Consensus 133 ~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (187)
T PRK00107 133 PLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLP 173 (187)
T ss_pred HhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecC
Confidence 99999999997654433333333333333334456666654
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-09 Score=111.59 Aligned_cols=121 Identities=17% Similarity=0.294 Sum_probs=86.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++...++.|..+|+++|+++.+++.+++.+..++-.-.+...... ....+.||+|+++=..+-
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~--~~~~~~~dlvvANI~~~v 237 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE--DLVEGKFDLVVANILADV 237 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS--CTCCS-EEEEEEES-HHH
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec--ccccccCCEEEECCCHHH
Confidence 367899999999999999999999989999999999999887766555533233333222 233589999998754443
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEE
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 200 (771)
+..++..+.++|+|||+++++-+..... ..+...+..+|.+.-
T Consensus 238 ----------L~~l~~~~~~~l~~~G~lIlSGIl~~~~-~~v~~a~~~g~~~~~ 280 (295)
T PF06325_consen 238 ----------LLELAPDIASLLKPGGYLILSGILEEQE-DEVIEAYKQGFELVE 280 (295)
T ss_dssp ----------HHHHHHHCHHHEEEEEEEEEEEEEGGGH-HHHHHHHHTTEEEEE
T ss_pred ----------HHHHHHHHHHhhCCCCEEEEccccHHHH-HHHHHHHHCCCEEEE
Confidence 4578899999999999999988764332 334444444665543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.6e-09 Score=91.90 Aligned_cols=101 Identities=29% Similarity=0.351 Sum_probs=82.0
Q ss_pred eEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhh-cCCCCcEEEEeecCCCCC-CCCCccEEEecccccccc
Q 004164 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQF-MDETFDVILDKGGLDALM 148 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~-~~~~~i~~~~~D~~~l~~-~~~sFDlVi~~~~l~~l~ 148 (771)
+|||+|||+|..+..++..+..+++++|+++.+++.+++... ....++.+...|..+... ..++||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 589999999999999988555699999999999987763332 233678999999988753 56789999999998874
Q ss_pred CcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 149 ~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
.. ....+++.+.+.|++||.+++.
T Consensus 80 ~~-----~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VE-----DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hh-----HHHHHHHHHHHHcCCCCEEEEE
Confidence 11 2669999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-09 Score=108.32 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=76.7
Q ss_pred CeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~--~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
..++|+|||||..+.-++.. +.+|+|+|+|+.||+.+.+.....+. ..+....++.++.-.+++.|+|++..++|++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 38999999999777777766 77999999999999877554322222 2233333444443348999999999999998
Q ss_pred cCcccchHHHHHHHHHHHHccccCe-EEEEEEcCc
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLAE 181 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG-~~ii~~~~~ 181 (771)
. .+++.+++.|+||+.| .+.+-.+.+
T Consensus 114 d--------le~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 114 D--------LERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred c--------hHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 5 5699999999999866 666666664
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=102.60 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=95.5
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM 125 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~ 125 (771)
+..-+.+...+.+++.. .++.+|||||||+|..+..|++... +|+.+|..+...+.|++++...+ .++.+.++|.
T Consensus 54 tis~P~~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG 129 (209)
T COG2518 54 TISAPHMVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 (209)
T ss_pred eecCcHHHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc
Confidence 33445566677777765 7899999999999999999999855 89999999999999988776655 5899999999
Q ss_pred CCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 126 ~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..---+...||.|+..++...++ +.+.+.|++||++++-.-
T Consensus 130 ~~G~~~~aPyD~I~Vtaaa~~vP-------------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 130 SKGWPEEAPYDRIIVTAAAPEVP-------------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ccCCCCCCCcCEEEEeeccCCCC-------------HHHHHhcccCCEEEEEEc
Confidence 87543458999999988887765 456788999999998765
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-08 Score=96.14 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=96.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~-~~~i~~~~~D~~~l 128 (771)
.+++...+..|.. .+++.++|||||+|..+.+++..+ .++|+++|-++.+++...+...+- .+++..+.+|+.+.
T Consensus 20 ~EIRal~ls~L~~---~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRP---RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCC---CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 3555555555543 789999999999999999999654 379999999999998654433222 37899999999875
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCc
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 196 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w 196 (771)
--...+||.|+..|. -. ++.+++.+...|||||+++..-...+.....+-..-+.++
T Consensus 97 L~~~~~~daiFIGGg-~~----------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 97 LPDLPSPDAIFIGGG-GN----------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred hcCCCCCCEEEECCC-CC----------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 222237999999887 33 4589999999999999999877665444332222224466
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-09 Score=105.30 Aligned_cols=131 Identities=16% Similarity=0.242 Sum_probs=93.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|.|.++..+....|..+|++||+++..++.|++.+....-+.++++.+|..+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--------------- 95 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--------------- 95 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC---------------
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc---------------
Confidence 55789999999999999999999998999999999999999998843222229999999876432
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
..+||+|+... +-. .|. ......-..|++.++++|+|+|.|++.. .+.... +.
T Consensus 96 -------------------~~~fD~Iv~NP--P~~-~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~-~~~~~~-~~- 148 (170)
T PF05175_consen 96 -------------------DGKFDLIVSNP--PFH-AGG--DDGLDLLRDFIEQARRYLKPGGRLFLVI-NSHLGY-ER- 148 (170)
T ss_dssp -------------------TTCEEEEEE-----SB-TTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEE-ETTSCH-HH-
T ss_pred -------------------ccceeEEEEcc--chh-ccc--ccchhhHHHHHHHHHHhccCCCEEEEEe-ecCCCh-HH-
Confidence 26799999943 110 000 0011235889999999999999997644 333332 22
Q ss_pred HHHHHHhccceEEee
Q 004164 701 ISRMKMVFNHLFCLQ 715 (771)
Q Consensus 701 ~~~l~~vF~~v~~~~ 715 (771)
.+++.|..+-.+.
T Consensus 149 --~l~~~f~~~~~~~ 161 (170)
T PF05175_consen 149 --LLKELFGDVEVVA 161 (170)
T ss_dssp --HHHHHHS--EEEE
T ss_pred --HHHHhcCCEEEEE
Confidence 2888998776654
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-08 Score=100.50 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=98.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...++|+||+|.|.+...+....|...+++||+++.+++.|++...-..-.+++++.+|+.++.....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~------------ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF------------ 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC------------
Confidence 44689999999999999999999999999999999999999876521112479999999998875532
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
....+|.|+++.. |+...-......++..++++.+.+.|+|||.|.+.. ........+
T Consensus 84 ------------------~~~~~d~v~~~~p--dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t--d~~~~~~~~ 141 (194)
T TIGR00091 84 ------------------PDGSLSKVFLNFP--DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT--DNEPLFEDM 141 (194)
T ss_pred ------------------CCCceeEEEEECC--CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe--CCHHHHHHH
Confidence 1247999999653 321111111234667899999999999999998654 455555556
Q ss_pred HHHHHHhc
Q 004164 701 ISRMKMVF 708 (771)
Q Consensus 701 ~~~l~~vF 708 (771)
++.+.+..
T Consensus 142 ~~~~~~~~ 149 (194)
T TIGR00091 142 LKVLSEND 149 (194)
T ss_pred HHHHHhCC
Confidence 66666653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=4e-09 Score=103.51 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=70.6
Q ss_pred EEEcCCHHHHHHHHHHhhcC----CCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHcccc
Q 004164 95 TNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (771)
Q Consensus 95 ~~vDiS~~~i~~~~~~~~~~----~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkp 170 (771)
+|+|+|+.|++.++++.... ..+++|+++|+.++|+++++||+|++..+++++.+ ...++++++|+|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d-------~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD-------RLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC-------HHHHHHHHHHHcCc
Confidence 58999999999887665321 24799999999999999999999999999999865 45999999999999
Q ss_pred CeEEEEEEcCcch
Q 004164 171 GGKFVCLTLAESH 183 (771)
Q Consensus 171 GG~~ii~~~~~~~ 183 (771)
||.+++.++..+.
T Consensus 74 GG~l~i~d~~~~~ 86 (160)
T PLN02232 74 GSRVSILDFNKSN 86 (160)
T ss_pred CeEEEEEECCCCC
Confidence 9999999988543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-08 Score=105.26 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=98.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQ 129 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~ 129 (771)
.-.+.|.+.+.. ....+|||+|||+|.++..|++.. ..+++.+|+|..+|+.+++......... .+...|+.+ +
T Consensus 145 ~GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~ 220 (300)
T COG2813 145 KGSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-P 220 (300)
T ss_pred hHHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-c
Confidence 344567777765 456699999999999999999984 5799999999999998876665555443 566666655 3
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~ 192 (771)
..+ +||+|+++-.+|.=... ......+++....+.|++||.+.++-.........+-+.|
T Consensus 221 v~~-kfd~IisNPPfh~G~~v--~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 221 VEG-KFDLIISNPPFHAGKAV--VHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred ccc-cccEEEeCCCccCCcch--hHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 333 99999999999863322 2234669999999999999999998875444433333333
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=105.24 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=100.5
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCC--CC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ--FM 131 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~--~~ 131 (771)
|..+... ....+|||+|||+|.++..++++ ...+|++||+.+.+.+.|++..... ..+++++++|+.++. ..
T Consensus 36 L~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPV---PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhccc---ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 4455543 44889999999999999999998 5479999999999999776554332 268999999999873 44
Q ss_pred CCCccEEEeccccccccCcc-cch----------HHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhcc-CcEE
Q 004164 132 DETFDVILDKGGLDALMEPE-LGH----------KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKM 198 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~-~~~----------~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~-~w~~ 198 (771)
..+||+|+++-..+...... ..+ ...+.+++...++||+||.+.++.-. .....+....+. .|..
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~--erl~ei~~~l~~~~~~~ 189 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP--ERLAEIIELLKSYNLEP 189 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH--HHHHHHHHHHHhcCCCc
Confidence 45799999998877655440 011 12889999999999999999998654 333344444433 4433
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-08 Score=99.98 Aligned_cols=131 Identities=12% Similarity=0.167 Sum_probs=93.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHh-hccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE-MKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~-~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..|...+|..+|++||+++.+++.|++.+....-++++++++|+.+.+.. ..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~----------- 108 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP----------- 108 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC-----------
Confidence 457899999999999999998889889999999999999999887332225699999999554442 21
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
...||+|++..- ++.......-.......+|+.+.+.|+|||.|++- +........
T Consensus 109 --------------------~~~~D~V~~~~~--~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~--~~~~~~~~~ 164 (202)
T PRK00121 109 --------------------DGSLDRIYLNFP--DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA--TDWEGYAEY 164 (202)
T ss_pred --------------------ccccceEEEECC--CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE--cCCHHHHHH
Confidence 256999998431 11100000011234588999999999999999964 344555555
Q ss_pred HHHHHHH
Q 004164 700 VISRMKM 706 (771)
Q Consensus 700 v~~~l~~ 706 (771)
+++.+++
T Consensus 165 ~~~~~~~ 171 (202)
T PRK00121 165 MLEVLSA 171 (202)
T ss_pred HHHHHHh
Confidence 5555554
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-08 Score=99.14 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
..+||+||+|+|.++..+....|..+|++||+++.+++.|++.. ++ ++++++.+|+.++. .
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d~~~~~---~---------- 106 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGRAEDFQ---H---------- 106 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecchhhcc---c----------
Confidence 57899999999999998888888889999999999999988764 43 35999999988751 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+.+. - .. -..+++.+.+.|+|||.+++-.
T Consensus 107 ---------------------~~~fD~I~s~~--~---~~---------~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 107 ---------------------EEQFDVITSRA--L---AS---------LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ---------------------cCCccEEEehh--h---hC---------HHHHHHHHHHhcCCCCEEEEEc
Confidence 25799999854 1 11 1568899999999999999754
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-08 Score=112.37 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--CCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--FMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--~~~~sFDlVi~~~~ 143 (771)
.++.+|||+|||+|..+..+++.+. ..|+++|+++.+++.+++++...+.+++++++|+.+++ ++.++||.|++...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 5789999999999999999988743 58999999999999998877666656789999998764 34578999995432
Q ss_pred cccc------------cCcccc---hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDAL------------MEPELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l------------~~~~~~---~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.... ...++- .....+++..+.++|||||++++++.+
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2110 010000 012568999999999999999988864
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=104.25 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=86.9
Q ss_pred cchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEee
Q 004164 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMD 124 (771)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D 124 (771)
-..+.+...+.+++.. .|+.+|||||||+|..+..|+.. |. ..|+++|+.+...+.++++....+ .++.++++|
T Consensus 55 is~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 55 ISAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp E--HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred chHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 3455666677777775 79999999999999999999886 43 479999999999999988876544 589999999
Q ss_pred cCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 125 MTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 125 ~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
....--+...||.|+..+....++ ..|.+.|++||++++.--
T Consensus 132 g~~g~~~~apfD~I~v~~a~~~ip-------------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 132 GSEGWPEEAPFDRIIVTAAVPEIP-------------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGGTTGGG-SEEEEEESSBBSS---------------HHHHHTEEEEEEEEEEES
T ss_pred hhhccccCCCcCEEEEeeccchHH-------------HHHHHhcCCCcEEEEEEc
Confidence 876544557899999988776542 558888999999998654
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=108.31 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=85.4
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-C-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-F-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMT 126 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~ 126 (771)
.+.+...+.+.+.. .++.+|||+|||+|.++..+++.. . +.|+++|+++.+++.++++....+ .++.++++|..
T Consensus 65 ~p~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~ 141 (322)
T PRK13943 65 QPSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY 141 (322)
T ss_pred cHHHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh
Confidence 34444555555543 577899999999999999998863 2 469999999999998877665433 56899999987
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+.....++||+|++...+.. ....+.+.|+|||++++..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~-------------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDE-------------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchHH-------------hHHHHHHhcCCCCEEEEEe
Confidence 76555578999998654443 3455788999999988754
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-08 Score=97.20 Aligned_cols=102 Identities=11% Similarity=0.095 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++... .++++++.+|+.++++++.+||.|+++-..+.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence 467899999999999999999985 4899999999999988766633 46899999999999887778999998755442
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.. ..+.++++.. .+.++|.+++..
T Consensus 90 -~~-----~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 90 -ST-----PILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred -HH-----HHHHHHHhcC--CCcceEEEEEEH
Confidence 21 1133443321 234677776643
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-08 Score=103.54 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=79.8
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-C-CCCCCccEEEeccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-Q-FMDETFDVILDKGGLD 145 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l-~-~~~~sFDlVi~~~~l~ 145 (771)
..+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++.+...+ .+++++|+.+. + ...++||+|+++-...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 458999999999999999876 33489999999999998766654332 58899998763 2 1135799999874322
Q ss_pred c-------------------ccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 A-------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~-------------------l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
. +....++...++.++..+.++|+|||++++..-.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1 1111122334678999999999999999987643
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.6e-08 Score=109.64 Aligned_cols=114 Identities=21% Similarity=0.304 Sum_probs=87.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDlVi~~~ 142 (771)
.++.+|||+|||+|..+..++.. +.++|+++|+|+.+++.+++++...+ .++.+.++|+..++ +.+++||.|++..
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 57889999999999999999876 24589999999999999987776554 45889999998875 4567899999643
Q ss_pred ccccccC----ccc-------c----hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 143 GLDALME----PEL-------G----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 143 ~l~~l~~----~~~-------~----~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
....+.. ++. . .....++|.++.++|||||+++.++.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2221111 110 0 012578899999999999999999876
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-08 Score=104.97 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc------CCCCcEEEEeecCCC-CCCCCCccEEE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSM-QFMDETFDVIL 139 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~------~~~~i~~~~~D~~~l-~~~~~sFDlVi 139 (771)
...+||+||||+|..+.++.+. +..+|+++|+++.+++.+++.+.. ..++++++.+|+... ...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887 567999999999999988765532 247899999998764 33467899999
Q ss_pred eccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+..+-....... -.-..+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~---l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEG---LFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhh---hhHHHHHHHHHHhcCCCcEEEEeC
Confidence 854322211100 013578899999999999998753
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.2e-08 Score=109.68 Aligned_cols=114 Identities=23% Similarity=0.242 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC----CCCCCccEEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----FMDETFDVIL 139 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~----~~~~sFDlVi 139 (771)
.++.+|||+|||+|..+..+++. + .+.|+++|+++.+++.++++....+ .+++++++|+.+++ +..++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 57899999999999999999886 2 3589999999999998877765554 46899999998875 4467899999
Q ss_pred ec------cccccccCccc-----c----hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 140 DK------GGLDALMEPEL-----G----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 140 ~~------~~l~~l~~~~~-----~----~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.. |++...++..- . .....++|.++.++|||||+++.++.+
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 63 33333222100 0 012568999999999999999988765
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.1e-08 Score=97.01 Aligned_cols=116 Identities=10% Similarity=0.125 Sum_probs=85.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..+....|..+|++||+++.+++.|++.+....-++++++.+|+... .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~---~------------- 94 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE---L------------- 94 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---c-------------
Confidence 456899999999999999998888889999999999999999875211114699999986321 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
..+||+|+++.... .-.++++.+.+.|+|||.++++.+.... ...+
T Consensus 95 -------------------~~~~D~v~~~~~~~-------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~~ 140 (187)
T PRK08287 95 -------------------PGKADAIFIGGSGG-------------NLTAIIDWSLAHLHPGGRLVLTFILLEN--LHSA 140 (187)
T ss_pred -------------------CcCCCEEEECCCcc-------------CHHHHHHHHHHhcCCCeEEEEEEecHhh--HHHH
Confidence 14699999853110 1167899999999999999998654322 2344
Q ss_pred HHHHHH
Q 004164 701 ISRMKM 706 (771)
Q Consensus 701 ~~~l~~ 706 (771)
+..+++
T Consensus 141 ~~~l~~ 146 (187)
T PRK08287 141 LAHLEK 146 (187)
T ss_pred HHHHHH
Confidence 555554
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.4e-08 Score=108.94 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=87.9
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE--EEeecCCCCC--
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRW--RVMDMTSMQF-- 130 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~--~~~D~~~l~~-- 130 (771)
.+...+.. .++.+|||+|||+|..+..+++. +.++|+++|+++.+++.++++....+-.+.+ ..+|....++
T Consensus 229 ~~~~~L~~---~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 229 WVATWLAP---QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHhCC---CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 34444543 57899999999999999999886 4458999999999999887777655533333 6666665443
Q ss_pred CCCCccEEEec------cccccccCcc------c---chHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 131 MDETFDVILDK------GGLDALMEPE------L---GHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 131 ~~~sFDlVi~~------~~l~~l~~~~------~---~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.++||.|+.. |+++..++.. + -......+|.++.++|||||+++.++.+
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 56789999953 3444332210 0 0012578999999999999999999876
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.5e-08 Score=101.90 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.++.+|||+|||+|..+..+++. + .+.|+++|+++.+++.++++....+ .++.+.+.|+..++...++||+|+....
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 57889999999999999998875 2 3589999999999998887775554 4689999998877655567999996322
Q ss_pred cccc----cCcccc-----------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDAL----MEPELG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l----~~~~~~-----------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.... .+++.. .....++|.++.++|||||+++.++.+
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2111 111100 012467999999999999999988876
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.5e-08 Score=101.70 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCC-CCCCCCccEEEeccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSM-QFMDETFDVILDKGG 143 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l-~~~~~sFDlVi~~~~ 143 (771)
+..+|||||||+|.++..++.. +..+|+++|+++.+++.+++.+... .++++++.+|+.+. .-..++||+|+...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 4578999999999999999876 4458999999999999887765432 36899999998654 22236899999643
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
++....+. ......+++++.+.|+|||++++..+..+
T Consensus 145 ~~~~~~~~--~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 145 FDGEGIID--ALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCCcc--ccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 21110000 00135899999999999999998655443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=9e-08 Score=109.24 Aligned_cols=114 Identities=23% Similarity=0.155 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEec--
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDK-- 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~-- 141 (771)
.++.+|||+|||+|..+..+++. +.++|+++|+|+.+++.+++++...+ .+++++++|+.+++ ++++||+|+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 57789999999999999888875 23589999999999998887776554 46899999998875 45789999952
Q ss_pred ----ccccccc------Ccccc---hHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 142 ----GGLDALM------EPELG---HKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 142 ----~~l~~l~------~~~~~---~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
|++..-+ +++.- ......+|.++.++|||||+++..+.+-
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2222111 10000 0124579999999999999999999763
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.9e-08 Score=101.39 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
+..+|||+|||+|.++..++... ..+|+++|+++.+++.++++. +++.++++|+.+... +.+||+|+++-.+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFES-NEKFDVVISNPPFGK 138 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhcc-cCCCcEEEEcCCccc
Confidence 45799999999999998887752 358999999999998775542 578999999998753 468999999988887
Q ss_pred ccCcccch-----------HH--HHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 147 LMEPELGH-----------KL--GNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 147 l~~~~~~~-----------~~--~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
+...+... .. +...+.....+|+|+|.+++.-.+.+.+
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y 189 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYY 189 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccc
Confidence 65432111 00 3678889999999999887775444443
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-08 Score=94.87 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=84.8
Q ss_pred CCCcEEEEeccccHHHHHHH-HhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~-~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
+..+||+||+|+|.+...|. ...|..++++||+++.+++.|++.+ ++ ++++++++|..+ +...-
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~-l~~~~-------- 70 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIED-LPQEL-------- 70 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTC-GCGCS--------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhc-ccccc--------
Confidence 45789999999999999998 5667889999999999999999965 55 389999999987 33210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc-HHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~-~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
...||+|+....- ..+-+ ..+|+.+.+.|+++|++++.......+
T Consensus 71 -----------------------~~~~D~I~~~~~l-----------~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 71 -----------------------EEKFDIIISNGVL-----------HHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp -----------------------STTEEEEEEESTG-----------GGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred -----------------------CCCeeEEEEcCch-----------hhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 1579999995211 22222 478999999999999999887663444
Q ss_pred HH
Q 004164 696 TK 697 (771)
Q Consensus 696 ~~ 697 (771)
..
T Consensus 117 ~~ 118 (152)
T PF13847_consen 117 LP 118 (152)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=97.86 Aligned_cols=120 Identities=19% Similarity=0.326 Sum_probs=97.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+|+..|.|.|.|+++|.... |.-+|+.+|++++-++.|++.| |+ .+++++..+|..+++..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~~~~--------- 161 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREGIDE--------- 161 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEeccccccccc---------
Confidence 345799999999999999999754 5579999999999999999987 55 56689999998876432
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
..||+|++|+-.+ .++++.+++.|+|||.+++-+ +.-+
T Consensus 162 -------------------------~~vDav~LDmp~P---------------W~~le~~~~~Lkpgg~~~~y~--P~ve 199 (256)
T COG2519 162 -------------------------EDVDAVFLDLPDP---------------WNVLEHVSDALKPGGVVVVYS--PTVE 199 (256)
T ss_pred -------------------------cccCEEEEcCCCh---------------HHHHHHHHHHhCCCcEEEEEc--CCHH
Confidence 3699999988544 889999999999999999765 4444
Q ss_pred HHHHHHHHHHHh-ccceE
Q 004164 696 TKDMVISRMKMV-FNHLF 712 (771)
Q Consensus 696 ~~~~v~~~l~~v-F~~v~ 712 (771)
..+..+..|++. |-++-
T Consensus 200 Qv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 200 QVEKTVEALRERGFVDIE 217 (256)
T ss_pred HHHHHHHHHHhcCccchh
Confidence 456678888888 66543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-07 Score=93.60 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=88.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~-~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
...+||++|+|+|.++..+.... +..+|++||+++.+++.|++.+.... .+++.++.+|+.+++....
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~---------- 109 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN---------- 109 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC----------
Confidence 45689999999999988877654 55699999999999999988752211 3678999999988765532
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHH
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 698 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 698 (771)
..||+|++..... .-..+++.+.+.|+|||.+++.... .+...
T Consensus 110 ----------------------~~~D~V~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~ 152 (198)
T PRK00377 110 ----------------------EKFDRIFIGGGSE-------------KLKEIISASWEIIKKGGRIVIDAIL--LETVN 152 (198)
T ss_pred ----------------------CCCCEEEECCCcc-------------cHHHHHHHHHHHcCCCcEEEEEeec--HHHHH
Confidence 4699999843111 1167899999999999999986542 23334
Q ss_pred HHHHHHHHh
Q 004164 699 MVISRMKMV 707 (771)
Q Consensus 699 ~v~~~l~~v 707 (771)
.+...|++.
T Consensus 153 ~~~~~l~~~ 161 (198)
T PRK00377 153 NALSALENI 161 (198)
T ss_pred HHHHHHHHc
Confidence 556666543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.6e-09 Score=103.91 Aligned_cols=112 Identities=24% Similarity=0.328 Sum_probs=83.3
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDET 134 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~s 134 (771)
+.+.|......+-.++||+|||||..+..|.+.-. +++|+|+|+.|++.+.++- .+. +..+.|+..+ ...++.
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg--~YD--~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKG--LYD--TLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhcc--chH--HHHHHHHHHHhhhccCCc
Confidence 44444443334578999999999999999977644 8999999999998776542 111 2233333322 145688
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
||+|.+..++-++... +.++.-+...|+|||.|.++.-.
T Consensus 189 ~DLi~AaDVl~YlG~L-------e~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 189 FDLIVAADVLPYLGAL-------EGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred ccchhhhhHHHhhcch-------hhHHHHHHHhcCCCceEEEEecc
Confidence 9999999999998874 48999999999999999997643
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-07 Score=96.97 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=103.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||++|.|.|..+.++...++. ..|++||+++..++.+++.+.-..-.+++++.+|+..+-..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~------------- 137 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA------------- 137 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh-------------
Confidence 4468999999999999998887753 58999999999999999887321113589999999775221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCCCcEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLF 685 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~~Gil 685 (771)
...||+|++|+-.+. .|+....+.. ...++|+.+.+.|+|||.+
T Consensus 138 --------------------~~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~l 195 (264)
T TIGR00446 138 --------------------VPKFDAILLDAPCSG--EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVL 195 (264)
T ss_pred --------------------ccCCCEEEEcCCCCC--CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 135999999984431 2322222221 3467899999999999999
Q ss_pred EEEeccCChhHHHHHHHHHHHhccceE
Q 004164 686 IVNLVSRSQATKDMVISRMKMVFNHLF 712 (771)
Q Consensus 686 v~Nl~~~~~~~~~~v~~~l~~vF~~v~ 712 (771)
++-..+...+..+.+++.+.+.++...
T Consensus 196 vYstcs~~~~Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 196 VYSTCSLEPEENEAVVDYLLEKRPDVV 222 (264)
T ss_pred EEEeCCCChHHHHHHHHHHHHhCCCcE
Confidence 998888888888889999888777543
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-07 Score=97.74 Aligned_cols=116 Identities=16% Similarity=0.255 Sum_probs=84.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+.+||++|+|+|+++..+....|..+|++||+++.++++|++..... -+++++++.+|..+.+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~-------------- 186 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP-------------- 186 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--------------
Confidence 346899999999999999999999899999999999999999987321 14689999999866431
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CCC-----CcCCcCc--------ccHHHHHHHHHccCCCcE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM-----TCPAADF--------VEGSFLLTVKDALSEQGL 684 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~--~g~-----s~pp~~f--------~~~~fl~~~~~~L~~~Gi 684 (771)
..+||+|+.|.--.... ..+ .-|...+ .-..+++.+.+.|+|||.
T Consensus 187 --------------------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 187 --------------------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred --------------------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 14699999963110000 001 0011111 125678999999999999
Q ss_pred EEEEec
Q 004164 685 FIVNLV 690 (771)
Q Consensus 685 lv~Nl~ 690 (771)
+++.+.
T Consensus 247 l~~e~g 252 (284)
T TIGR03533 247 LVVEVG 252 (284)
T ss_pred EEEEEC
Confidence 999875
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=99.35 Aligned_cols=118 Identities=21% Similarity=0.238 Sum_probs=83.8
Q ss_pred eEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc---
Q 004164 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD--- 145 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~--- 145 (771)
+|||+|||+|.++..++.... .+|+++|+|+.+++.|++.+...+ .++.++..|...- .. ++||+|+++-.-=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-LR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-cC-CceeEEEeCCCCCCCc
Confidence 799999999999999998854 599999999999998866665554 4556666665542 22 4899999763210
Q ss_pred ---------------cccCcccchHHHHHHHHHHHHccccCeEEEEEEc-Ccchhhcchhh
Q 004164 146 ---------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL-AESHVLGLLFP 190 (771)
Q Consensus 146 ---------------~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~-~~~~~~~~l~~ 190 (771)
++....++.....+++.++.+.|+|||.+++..- .+......++.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~ 251 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFE 251 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence 1112223345689999999999999999888664 44443333333
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=99.01 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=79.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+.+||+||+|+|.++..|...+|..+|++||+++.+++.|++. +++++++|+.++. .
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~----------- 86 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK---P----------- 86 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC---C-----------
Confidence 355789999999999999999998888999999999999999863 4788889986541 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
...||+|+... . ..-+ | -...+++.+.+.|+|||.|++++..
T Consensus 87 --------------------~~~fD~v~~~~--~--l~~~--~----d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 87 --------------------KPDTDVVVSNA--A--LQWV--P----EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred --------------------CCCceEEEEeh--h--hhhC--C----CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 25799999832 1 0111 1 1277899999999999999998654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=94.17 Aligned_cols=105 Identities=19% Similarity=0.141 Sum_probs=81.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..+....|..+|++||+||.+++.|++++.-..-++++++.+|+.+.+....
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~------------ 107 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA------------ 107 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC------------
Confidence 44689999999999999888777878999999999999999987521111469999999977544322
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
..+|.|++|... . -..+++.+.+.|+|||.|+++...
T Consensus 108 --------------------~~~d~v~~~~~~-----~---------~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 108 --------------------PAPDRVCIEGGR-----P---------IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --------------------CCCCEEEEECCc-----C---------HHHHHHHHHHhcCCCeEEEEEeec
Confidence 346778875311 0 168999999999999999998754
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=106.23 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=87.4
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--C
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--F 130 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~ 130 (771)
.+...+.. .++.+|||+|||+|..+..+++. +.++|+++|+++.+++.++++....+ .+++++++|+.++. +
T Consensus 241 lv~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDP---KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 34444443 57789999999999999999886 34689999999999998877665544 46899999998763 3
Q ss_pred CCCCccEEEecccccccc----Cccc-------c----hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 131 MDETFDVILDKGGLDALM----EPEL-------G----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~----~~~~-------~----~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+ ++||+|++........ .++. . ......++..+.++|||||+++..+.+
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 7899999754321110 0100 0 012457899999999999999977654
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=98.42 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=83.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.+..+|||||+|.|.++..+++. +..+++..|. |.+++.+.+ .++++++.+|+. -+++. +|+++.+.+||
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 45679999999999999999887 4458999998 778877755 578999999999 56765 99999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccC--eEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSG--GKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpG--G~~ii~~~~ 180 (771)
...+.+ ...+|+++++.|+|| |++++.+..
T Consensus 170 ~~~d~~-----~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 170 DWSDED-----CVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GS-HHH-----HHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hcchHH-----HHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 987655 789999999999999 999999865
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-07 Score=110.65 Aligned_cols=151 Identities=16% Similarity=0.036 Sum_probs=99.4
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEE
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~ 122 (771)
+|-+....+..+.++. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.+...+ .++++++
T Consensus 522 ~flDqr~~R~~~~~~~------~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~ 595 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA------KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ 595 (702)
T ss_pred ECHHHHHHHHHHHHhc------CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE
Confidence 4544444455555543 467999999999999999999887789999999999998877665443 3689999
Q ss_pred eecCCCC-CCCCCccEEEeccccccccCc----ccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcE
Q 004164 123 MDMTSMQ-FMDETFDVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 197 (771)
Q Consensus 123 ~D~~~l~-~~~~sFDlVi~~~~l~~l~~~----~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~ 197 (771)
+|+.+.- -..++||+|++.-.-..-... .........++..+.++|+|||.+++.+... ++..........++.
T Consensus 596 ~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-~~~~~~~~~~~~g~~ 674 (702)
T PRK11783 596 ADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-GFKMDEEGLAKLGLK 674 (702)
T ss_pred ccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-cCChhHHHHHhCCCe
Confidence 9987631 114689999975322111000 0011236688999999999999998876542 222221111234566
Q ss_pred EEEeec
Q 004164 198 MSVHAI 203 (771)
Q Consensus 198 ~~~~~i 203 (771)
+.....
T Consensus 675 ~~~i~~ 680 (702)
T PRK11783 675 AEEITA 680 (702)
T ss_pred EEEEec
Confidence 665443
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.3e-07 Score=96.84 Aligned_cols=150 Identities=13% Similarity=0.161 Sum_probs=98.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..+...+|..+++++|+++.+++.|++.+......+++++.+|..+.+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--------------- 172 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--------------- 172 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC---------------
Confidence 45689999999999999999999989999999999999999998752234679999998743211
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC--CC------CcCCcCcc--------cHHHHHHHHHccCCCcE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS--GM------TCPAADFV--------EGSFLLTVKDALSEQGL 684 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~--g~------s~pp~~f~--------~~~fl~~~~~~L~~~Gi 684 (771)
..+||+|+.+.--..... .+ .-|...+. -..+++.+.+.|+|||.
T Consensus 173 -------------------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 173 -------------------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred -------------------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCE
Confidence 257999998531110000 00 01111222 25688888899999999
Q ss_pred EEEEeccCChhHHHHHHHHHHH-hccceEEeeecCCccEEEEEe
Q 004164 685 FIVNLVSRSQATKDMVISRMKM-VFNHLFCLQLEEDVNLVLFGL 727 (771)
Q Consensus 685 lv~Nl~~~~~~~~~~v~~~l~~-vF~~v~~~~~~~~~N~Vl~a~ 727 (771)
+++..-.... ..+...+++ -|..+....--.+...++++.
T Consensus 234 l~~e~g~~~~---~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 234 LLLEIGYDQG---EAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred EEEEECchHH---HHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 9997633222 233444443 355444443233455666653
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.1e-07 Score=89.03 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=96.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh---cCCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---FGFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~---Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+..++++||+|+|+++..+....|..+|+++|-|++.++..++. ||+ +++.++.+||-+++.+.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~~L~~~--------- 100 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPEALPDL--------- 100 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchHhhcCC---------
Confidence 345689999999999999888888999999999999999988766 564 68999999999998764
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
.++|+||+ +-+ .++ ++.|+.+...|++||.+|+|.+.-...
T Consensus 101 ------------------------~~~daiFI----GGg-~~i---------~~ile~~~~~l~~ggrlV~naitlE~~- 141 (187)
T COG2242 101 ------------------------PSPDAIFI----GGG-GNI---------EEILEAAWERLKPGGRLVANAITLETL- 141 (187)
T ss_pred ------------------------CCCCEEEE----CCC-CCH---------HHHHHHHHHHcCcCCeEEEEeecHHHH-
Confidence 26999999 211 333 899999999999999999999765433
Q ss_pred HHHHHHHHHHhcc-ceEEee
Q 004164 697 KDMVISRMKMVFN-HLFCLQ 715 (771)
Q Consensus 697 ~~~v~~~l~~vF~-~v~~~~ 715 (771)
..+++.+++.=- ++..+.
T Consensus 142 -~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 142 -AKALEALEQLGGREIVQVQ 160 (187)
T ss_pred -HHHHHHHHHcCCceEEEEE
Confidence 234555544422 444443
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.6e-07 Score=99.72 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=92.3
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC---CCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg---~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+||+||+|.|.++..+...+|..+|++||+++.+++.|++.+. .....+++++.+|+...+ .
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~---~----------- 295 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---E----------- 295 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC---C-----------
Confidence 58999999999999999999999999999999999999998862 211247899999986532 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
..+||+|+++ .+-.. +.. ... -....++..++++|+|||.|.+-. .+.-.
T Consensus 296 --------------------~~~fDlIlsN--PPfh~-~~~-~~~-~ia~~l~~~a~~~LkpGG~L~iV~-nr~l~---- 345 (378)
T PRK15001 296 --------------------PFRFNAVLCN--PPFHQ-QHA-LTD-NVAWEMFHHARRCLKINGELYIVA-NRHLD---- 345 (378)
T ss_pred --------------------CCCEEEEEEC--cCccc-Ccc-CCH-HHHHHHHHHHHHhcccCCEEEEEE-ecCcC----
Confidence 2479999993 22111 100 011 124678999999999999888643 33333
Q ss_pred HHHHHHHhccceEEe
Q 004164 700 VISRMKMVFNHLFCL 714 (771)
Q Consensus 700 v~~~l~~vF~~v~~~ 714 (771)
....|++.|..+-.+
T Consensus 346 y~~~L~~~fg~~~~v 360 (378)
T PRK15001 346 YFHKLKKIFGNCTTI 360 (378)
T ss_pred HHHHHHHHcCCceEE
Confidence 346677789876554
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.7e-07 Score=93.14 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=84.6
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc----CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~----g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~ 120 (771)
+-|.....+...+... . ..+.+|||+|||+|.++..++.. +..+|+++|+++.+++.+++.. +++.+
T Consensus 31 GqFfTP~~iAr~~~i~--~---~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~ 101 (241)
T PHA03412 31 GAFFTPIGLARDFTID--A---CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATW 101 (241)
T ss_pred CccCCCHHHHHHHHHh--c---cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEE
Confidence 4455555665544322 1 24679999999999999988764 2348999999999998776443 46899
Q ss_pred EEeecCCCCCCCCCccEEEeccccccccCccc-----chHHHHHHHHHHHHccccCeE
Q 004164 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPEL-----GHKLGNQYLSEVKRLLKSGGK 173 (771)
Q Consensus 121 ~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~-----~~~~~~~~l~~i~rvLkpGG~ 173 (771)
+..|+...++ +++||+|+++-.+..+...+. +......++....+++++|+.
T Consensus 102 ~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 102 INADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999987665 468999999877765442221 112356788888887776664
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-07 Score=101.88 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=90.8
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWR 121 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~ 121 (771)
.||-+....+..+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.+...+ .+++++
T Consensus 203 G~flDqr~~R~~~~~~~------~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i 276 (396)
T PRK15128 203 GYYLDQRDSRLATRRYV------ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV 276 (396)
T ss_pred CcChhhHHHHHHHHHhc------CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 35555444444444443 468999999999999988776676799999999999998876665443 368999
Q ss_pred EeecCCCC--C--CCCCccEEEeccccccccCcc--cchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 122 VMDMTSMQ--F--MDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 122 ~~D~~~l~--~--~~~sFDlVi~~~~l~~l~~~~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++|+.+.- + ..++||+|++.-....-.... .....+..++....++|+|||.+++.+.+
T Consensus 277 ~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99997741 2 246899999764432211000 00112567777889999999999987754
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=95.05 Aligned_cols=130 Identities=19% Similarity=0.234 Sum_probs=101.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+-+.|-|..+....+.. ..+|..||-||.|+++|+-.- ++ .+.+++++.||+.+++++..
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~-------- 202 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFD-------- 202 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCC--------
Confidence 456799999999998877666663 239999999999999997554 33 24479999999999999976
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC----
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR---- 692 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~---- 692 (771)
+..||+||.|- +--+ -+.++++.+|++.+.+.|++||-+.--+-.+
T Consensus 203 -----------------------D~sfDaIiHDP--PRfS-----~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry 252 (287)
T COG2521 203 -----------------------DESFDAIIHDP--PRFS-----LAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY 252 (287)
T ss_pred -----------------------ccccceEeeCC--Cccc-----hhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc
Confidence 47799999964 2111 2558999999999999999999887555333
Q ss_pred -ChhHHHHHHHHHHHh-cc
Q 004164 693 -SQATKDMVISRMKMV-FN 709 (771)
Q Consensus 693 -~~~~~~~v~~~l~~v-F~ 709 (771)
.......+..+|+++ |.
T Consensus 253 rG~d~~~gVa~RLr~vGF~ 271 (287)
T COG2521 253 RGLDLPKGVAERLRRVGFE 271 (287)
T ss_pred ccCChhHHHHHHHHhcCce
Confidence 334567889999988 54
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-06 Score=90.19 Aligned_cols=104 Identities=12% Similarity=0.152 Sum_probs=78.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..+.+.. |..+|++||+++.+++.|++.+.-..-++++++.+|+.++- .
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~------------ 110 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--F------------ 110 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--C------------
Confidence 45789999999999999888775 56799999999999999998863212257899999986541 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
...+||+|++...-. .+. . ...+|+.+.+.|+|||.+++
T Consensus 111 -------------------~~~~fD~V~~~~~l~----~~~----~--~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 111 -------------------DDNSFDYVTIGFGLR----NVP----D--YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred -------------------CCCCccEEEEecccc----cCC----C--HHHHHHHHHHHcCcCeEEEE
Confidence 125799999842111 111 1 25789999999999999986
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=95.25 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=86.7
Q ss_pred ccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCC
Q 004164 513 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKS 592 (771)
Q Consensus 513 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r 592 (771)
++.-||..+++..+.-. ....+||.||+|.|..+..|.+... +|..||+++...+.|++.|.--.-.+
T Consensus 54 tis~P~~vA~m~~~L~~----------~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 54 TISAPHMVARMLQLLEL----------KPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN 121 (209)
T ss_pred eecCcHHHHHHHHHhCC----------CCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence 56667766666544321 4568999999999999999999874 89999999999999999882111234
Q ss_pred eeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHH
Q 004164 593 LKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFL 672 (771)
Q Consensus 593 ~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl 672 (771)
+.|+++||..-..+ ...||.|++-+-... .|..
T Consensus 122 V~v~~gDG~~G~~~---------------------------------~aPyD~I~Vtaaa~~-------vP~~------- 154 (209)
T COG2518 122 VTVRHGDGSKGWPE---------------------------------EAPYDRIIVTAAAPE-------VPEA------- 154 (209)
T ss_pred eEEEECCcccCCCC---------------------------------CCCcCEEEEeeccCC-------CCHH-------
Confidence 99999999875333 256999999653332 2433
Q ss_pred HHHHHccCCCcEEEEEec
Q 004164 673 LTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 673 ~~~~~~L~~~Gilv~Nl~ 690 (771)
+.+.|++||.+++-+-
T Consensus 155 --Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 155 --LLDQLKPGGRLVIPVG 170 (209)
T ss_pred --HHHhcccCCEEEEEEc
Confidence 3455999999998775
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-07 Score=95.86 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-----CCCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-----FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-----~~~~sFD 136 (771)
.+..+|||+|||+|..+..++.. +.++|+++|+++.+++.+++.+...+ .+++++.+|+.+. + .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 35789999999999998888775 34699999999999998877765544 4699999999764 1 1246899
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+|+.... ......++..+.++|+|||.+++-.
T Consensus 147 ~VfiDa~----------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD----------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC----------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9986321 1125688999999999999977754
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.7e-07 Score=101.50 Aligned_cols=137 Identities=13% Similarity=0.190 Sum_probs=104.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||++|+|.|+.+.++...++ ..+|+++|+++..++.+++.+ |+ ..++++.+|+..+-...
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~~~--------- 304 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTEYV--------- 304 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhhhh---------
Confidence 446899999999999998888873 469999999999999999886 54 34899999998763221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~~ 682 (771)
..+||.|++|+-.+. .|+..-.++. +..+.|..+.+.|+||
T Consensus 305 -----------------------~~~fD~Vl~DaPCsg--~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 305 -----------------------QDTFDRILVDAPCTS--LGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred -----------------------hccCCEEEECCCCCC--CccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 246999999985442 2332222221 3467799999999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhccceEEe
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 714 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~ 714 (771)
|.+++-..+..++..+.++..+-+-++.....
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~ 391 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQKDAEVI 391 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCCCcEEe
Confidence 99999998888888888888877666654433
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-07 Score=96.35 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=81.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..+...+|..+|++||+++.+++.|++.+ +++.++.+|+.++. .
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~---~----------- 90 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ---P----------- 90 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC---C-----------
Confidence 3457899999999999999999888889999999999999999886 35889999987652 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
..+||+|+... .- ..+ + -...+|+.+.+.|+|||.|++.+..
T Consensus 91 --------------------~~~fD~v~~~~--~l--~~~---~---d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 91 --------------------PQALDLIFANA--SL--QWL---P---DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred --------------------CCCccEEEEcc--Ch--hhC---C---CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 24799999842 10 111 1 1368999999999999999997643
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.3e-07 Score=97.82 Aligned_cols=147 Identities=14% Similarity=0.197 Sum_probs=98.0
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+||++|+|+|+++..+...+|..+|++||+++.++++|++..... ..++++++.+|..+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~---------------- 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP---------------- 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----------------
Confidence 6899999999999999999999999999999999999999987321 24679999999876431
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCC-CCCC-CCCC-----CcCCcCcc--------cHHHHHHHHHccCCCcEEE
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDS-SSGM-----TCPAADFV--------EGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~-s~d~-~~g~-----s~pp~~f~--------~~~fl~~~~~~L~~~Gilv 686 (771)
..+||+|+.+.- .+.. ...+ ..|...+. -..+++.+.+.|+|||.++
T Consensus 199 ------------------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 199 ------------------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred ------------------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 146999998631 0000 0000 11222221 2578899999999999999
Q ss_pred EEeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEecC
Q 004164 687 VNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSS 729 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~ 729 (771)
+.+... .. .+.+.+.. . ...++....+.-.+++++..
T Consensus 261 ~E~g~~-~~---~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 297 (307)
T PRK11805 261 VEVGNS-RV---HLEEAYPD-V-PFTWLEFENGGDGVFLLTRE 297 (307)
T ss_pred EEECcC-HH---HHHHHHhh-C-CCEEEEecCCCceEEEEEHH
Confidence 986432 22 23333332 1 12334555566667776644
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.9e-07 Score=88.32 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=77.8
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 004164 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (771)
Q Consensus 44 ~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~ 123 (771)
.|.|.....+...+.........-.+.+|+|+|||||.++...+-.|...|+++|+++.+++.+++...+...++.|.++
T Consensus 21 LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~ 100 (198)
T COG2263 21 LEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVA 100 (198)
T ss_pred ceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEc
Confidence 33444555555545444422222456789999999999999998889889999999999999887776665678999999
Q ss_pred ecCCCCCCCCCccEEEecccccccc
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALM 148 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~ 148 (771)
|+.++. ..||.++.+-.+....
T Consensus 101 dv~~~~---~~~dtvimNPPFG~~~ 122 (198)
T COG2263 101 DVSDFR---GKFDTVIMNPPFGSQR 122 (198)
T ss_pred chhhcC---CccceEEECCCCcccc
Confidence 999874 6789999887776553
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.4e-07 Score=94.25 Aligned_cols=101 Identities=11% Similarity=0.174 Sum_probs=77.1
Q ss_pred CCCcEEEEeccccHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHE--CMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~--~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.++..+.. ..|..++++||++|.|++.|++.+.- ....+++++.+|..++ .
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~----~--------- 122 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----A--------- 122 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC----C---------
Confidence 457899999999998887777 35788999999999999999998732 2245899999997653 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc----cHHHHHHHHHccCCCcEEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~----~~~fl~~~~~~L~~~Gilv~N 688 (771)
...+|+|++-. .-+++ -..+++.+.+.|+|||.|++-
T Consensus 123 ----------------------~~~~D~vv~~~------------~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 123 ----------------------IENASMVVLNF------------TLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred ----------------------CCCCCEEehhh------------HHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 13488877521 11122 257999999999999999874
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.1e-07 Score=97.62 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC--CCCCCCccEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM--QFMDETFDVI 138 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l--~~~~~sFDlV 138 (771)
+...+||+||||.|.++.++++.. ..+|+.+|+++.+++.+++.+.. ..++++++.+|+... ..++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 356899999999999999999884 46899999999999988776532 246899999997653 2235789999
Q ss_pred EeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 139 i~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
+....-...+.. .-.-..+++.+++.|+|||+++..
T Consensus 170 i~D~~dp~~~~~---~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQ---ELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchh---hhhHHHHHHHHHHhcCCCcEEEEC
Confidence 975432221110 001357899999999999998764
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-08 Score=97.36 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=95.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
+....++|||||-|.+...|...+..+++-+|.|-.|++.++. .....-.+.+.+.|-+.++|.+++||+|++...+||
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 3567999999999999999999998899999999999986643 222233567888999999999999999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhc
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~ 186 (771)
..+.. ..+.+++..|||+|.|+..-++.+.+.+
T Consensus 150 ~NdLP-------g~m~~ck~~lKPDg~FiasmlggdTLyE 182 (325)
T KOG2940|consen 150 TNDLP-------GSMIQCKLALKPDGLFIASMLGGDTLYE 182 (325)
T ss_pred hccCc-------hHHHHHHHhcCCCccchhHHhccccHHH
Confidence 98755 7899999999999999998888665443
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.7e-07 Score=95.74 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=81.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+.+||+||+|+|.++..|.... .+|++||+++.+++.|++...- ...++++++.+|..+.....
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------------ 109 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------------ 109 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------------
Confidence 45799999999999999888863 5899999999999999988631 12467999999998753221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCCh
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 694 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 694 (771)
...||+|++.. ....+.-| ..+|+.+.+.|+|||.+++-.+..+.
T Consensus 110 --------------------~~~fD~V~~~~----vl~~~~~~------~~~l~~~~~~LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 110 --------------------ETPVDLILFHA----VLEWVADP------KSVLQTLWSVLRPGGALSLMFYNANG 154 (255)
T ss_pred --------------------CCCCCEEEehh----HHHhhCCH------HHHHHHHHHHcCCCeEEEEEEECccH
Confidence 25799999731 10111111 57899999999999999876555443
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-07 Score=94.44 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=75.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..+.+..+ ..+|++||++|.+++.|++.+.-..-++++++.+|+.....
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-------------- 141 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-------------- 141 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------------
Confidence 457899999999999988888764 46999999999999999998732222579999999865311
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....||+|+++.... +..+.+.+.|+|||.|++.+
T Consensus 142 -------------------~~~~fD~I~~~~~~~----------------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 142 -------------------ENAPYDRIYVTAAGP----------------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred -------------------cCCCcCEEEECCCcc----------------cchHHHHHhhCCCcEEEEEE
Confidence 125699999964321 12245667899999999876
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.3e-07 Score=102.33 Aligned_cols=132 Identities=9% Similarity=0.117 Sum_probs=89.2
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC---
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--- 128 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--- 128 (771)
+...+.+++.. .++.+|||+|||+|.++..|+..+ .+|+++|+|+.+++.+++.+...+ .+++|+++|+.+.
T Consensus 285 l~~~vl~~l~~---~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 285 MVARALEWLDP---QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHhcC---CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 33344455542 567899999999999999999886 499999999999998876654433 4799999998653
Q ss_pred -CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEE
Q 004164 129 -QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (771)
Q Consensus 129 -~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 200 (771)
++.+++||+|+..-.-.. ....+..+.+ ++|++.++++. ....+...+......+|.+..
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g----------~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~~L~~~gY~l~~ 421 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAG----------AAEVMQALAK-LGPKRIVYVSC-NPATLARDAGVLVEAGYRLKR 421 (443)
T ss_pred hhhhcCCCCEEEECcCCcC----------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHHHHhhCCcEEEE
Confidence 344578999986432111 2345555554 68877766554 334444444444455676653
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8e-07 Score=98.13 Aligned_cols=130 Identities=13% Similarity=0.164 Sum_probs=99.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
..+.+|.||+|.|.....+....|...+++||+++.+++.|.+......-++++++.+|+..++....
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~------------ 189 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP------------ 189 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC------------
Confidence 45689999999999999999999999999999999999998877632222469999999998765443
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
+..+|.|++- -+|+...- +...++.+.|++.+++.|+|||.+.+. +.+..+...+
T Consensus 190 -------------------~~s~D~I~ln--FPdPW~Kk--rHRRlv~~~fL~e~~RvLkpGG~l~l~--TD~~~y~~~~ 244 (390)
T PRK14121 190 -------------------SNSVEKIFVH--FPVPWDKK--PHRRVISEDFLNEALRVLKPGGTLELR--TDSELYFEFS 244 (390)
T ss_pred -------------------CCceeEEEEe--CCCCcccc--chhhccHHHHHHHHHHHcCCCcEEEEE--EECHHHHHHH
Confidence 3679999983 34442111 234577899999999999999999865 3556666666
Q ss_pred HHHHHHh
Q 004164 701 ISRMKMV 707 (771)
Q Consensus 701 ~~~l~~v 707 (771)
+..+.+.
T Consensus 245 ~e~~~~~ 251 (390)
T PRK14121 245 LELFLKL 251 (390)
T ss_pred HHHHHhC
Confidence 6666554
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-07 Score=95.25 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=77.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++.+|....+ ..+|++||++|.+++.|++.+.-..-++++++.+|+.+....
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~------------ 143 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP------------ 143 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc------------
Confidence 3457899999999999999988865 357999999999999999987322225699999999764211
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
...||+|+++.... ...+.+.+.|+|||.|++.+.
T Consensus 144 ---------------------~~~fD~Ii~~~~~~----------------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 144 ---------------------LAPYDRIYVTAAGP----------------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ---------------------cCCCCEEEEcCCcc----------------cccHHHHHhcCcCcEEEEEEc
Confidence 24699999964211 123457788999999999764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=94.36 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCC-cEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~-i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
...+.||.|||-|+.|..+.-.-+.+|-.+|..+.+++.|++.......+ ..+.+..+.++..+.++||+||+-.++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 46799999999999999887666789999999999999998766442333 67888999888666689999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+.+.+ +-.+|+.+...|+|||.+++-+.
T Consensus 135 LTD~d-----lv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 135 LTDED-----LVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp S-HHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHH-----HHHHHHHHHHhCcCCcEEEEEec
Confidence 98876 88999999999999999998654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.8e-07 Score=92.35 Aligned_cols=111 Identities=12% Similarity=0.196 Sum_probs=77.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|||.|+..++... ..|+++|+++..+++|+.|--- ..-.+........+ +.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e-~gv~i~y~~~~~ed----l~------------ 119 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALE-SGVNIDYRQATVED----LA------------ 119 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhh-ccccccchhhhHHH----HH------------
Confidence 35789999999999999999886 7999999999999999988621 00112233232222 22
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
..+++||+|++ -+.-.-+.-| ..|++.|.++++|||++++-.+.|+...+
T Consensus 120 -----------------~~~~~FDvV~c----mEVlEHv~dp------~~~~~~c~~lvkP~G~lf~STinrt~ka~ 169 (243)
T COG2227 120 -----------------SAGGQFDVVTC----MEVLEHVPDP------ESFLRACAKLVKPGGILFLSTINRTLKAY 169 (243)
T ss_pred -----------------hcCCCccEEEE----hhHHHccCCH------HHHHHHHHHHcCCCcEEEEeccccCHHHH
Confidence 01368999986 2211111111 56999999999999999988887775543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=93.49 Aligned_cols=148 Identities=14% Similarity=0.219 Sum_probs=98.2
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+||++|+|+|.++..+...+|..+|++||+++.++++|++.... ...++++++.+|..+.+ .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---~------------- 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---A------------- 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---c-------------
Confidence 689999999999999999999988999999999999999998621 12357999999976532 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CCC-----CcCCcCc--------ccHHHHHHHHHccCCCcEEE
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM-----TCPAADF--------VEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~--~g~-----s~pp~~f--------~~~~fl~~~~~~L~~~Gilv 686 (771)
..+||+|+.+.---... ..+ ..|...+ .-..++..+.+.|+|||+++
T Consensus 180 ------------------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 180 ------------------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred ------------------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 13699999853110000 000 1122222 23568888999999999999
Q ss_pred EEeccCChhHHHHHHHHHHH--hccceEEeeecCCccEEEEEe
Q 004164 687 VNLVSRSQATKDMVISRMKM--VFNHLFCLQLEEDVNLVLFGL 727 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~--vF~~v~~~~~~~~~N~Vl~a~ 727 (771)
+.+...... .+.+.+.. -|..+-.++--.+...++++.
T Consensus 242 ~e~g~~q~~---~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 242 CEIGNWQQK---SLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred EEECccHHH---HHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 988543332 33444442 355554444334556777764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-06 Score=95.03 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=97.9
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||+||+|+|.++..+....|..+|++||+|+.++++|++..... ..+++++.+|..+.. ..
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-g~rV~fi~gDl~e~~--l~------------- 315 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-GARVEFAHGSWFDTD--MP------------- 315 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEcchhccc--cc-------------
Confidence 35899999999999999998888899999999999999999987321 237999999975531 00
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCC-CCCCCCC------cCCcCcc--------cHHHHHHHHHccCCCcEEE
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSP-DSSSGMT------CPAADFV--------EGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~-d~~~g~s------~pp~~f~--------~~~fl~~~~~~L~~~Gilv 686 (771)
...+||+|+.+.--- .....+. -|...+. -..+++.+.+.|+|+|.++
T Consensus 316 -----------------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 316 -----------------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred -----------------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 014699999954110 0000000 0111121 2366777788999999998
Q ss_pred EEeccCChhHHHHHHHHHHHh-ccceEEeeecCCccEEEEEec
Q 004164 687 VNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLS 728 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~ 728 (771)
+-+-.. ..+.+.+.+.+. |..+-..+--.+..+++++..
T Consensus 379 lEiG~~---Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 379 LEHGFD---QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred EEECcc---HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 755322 233455555553 555544443445567777754
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.8e-07 Score=93.65 Aligned_cols=111 Identities=11% Similarity=0.064 Sum_probs=81.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCC---CCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~---~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||+||+|+|.++..|...+ |..+|++||+++.|++.|++..... ..++++++.+|+.+. .
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l----p------- 140 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL----P------- 140 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC----C-------
Confidence 345789999999999998888775 5569999999999999998775321 135799999997653 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
..+..||+|++-.. ...+ | --..+|+.+.+.|+|||.|++--+...
T Consensus 141 ----------------------~~~~sfD~V~~~~~----l~~~--~----d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 141 ----------------------FDDCYFDAITMGYG----LRNV--V----DRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred ----------------------CCCCCEeEEEEecc----cccC--C----CHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 12367999987211 0111 1 126799999999999999887655543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.2e-07 Score=98.91 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=81.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..|... +.+|++||+++.+++.|++++... ...+++++.+|+.++...
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~------------- 195 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE------------- 195 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc-------------
Confidence 3458999999999998888764 468999999999999999987542 235799999998665211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
..+||+|+. .+...-+. -...||+.+++.|+|||.+++..+.+.
T Consensus 196 --------------------~~~FD~Vi~----~~vLeHv~------d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 196 --------------------GRKFDAVLS----LEVIEHVA------NPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred --------------------cCCCCEEEE----hhHHHhcC------CHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 257999997 11111111 126899999999999999999876654
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=98.08 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
-.+..|||+|||+|.++..-+++|..+|+++|.|..+ +.+.+.....+ ..++++.+.++++.+|.++.|+|++.+.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 3578999999999999999999999999999999866 55655544443 34899999999987778999999999888
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
+++.-. ..+..+|-.=-+.|+|||.++
T Consensus 138 y~Ll~E----sMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYE----SMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHh----hhhhhhhhhhhhccCCCceEc
Confidence 877521 124455555568999999865
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-07 Score=91.59 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=76.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
...+||+||+|+|.++..+.+..+ ..+|++||+++.+++.|++.+.- ...++++++.+|+.+.+..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------------ 139 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------------ 139 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc------------
Confidence 346899999999999988888764 45899999999999999987731 1235799999999764221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
...||+|+++.... .+...+.+.|+|||.|++.+.
T Consensus 140 ---------------------~~~fD~Ii~~~~~~----------------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 ---------------------HAPFDAIIVTAAAS----------------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ---------------------CCCccEEEEccCcc----------------hhhHHHHHhcCcCcEEEEEEc
Confidence 24799999964221 122457788999999998763
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.4e-07 Score=93.53 Aligned_cols=116 Identities=12% Similarity=0.190 Sum_probs=82.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||++|+|+|.++..+...+|..+++++|+++.+++.|++.+....-++++++.+|+.+.+ .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~------------ 151 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---P------------ 151 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---c------------
Confidence 3468999999999999999999998899999999999999998863222246999999987632 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC--CCC------cCCcCc--------ccHHHHHHHHHccCCCcE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS--GMT------CPAADF--------VEGSFLLTVKDALSEQGL 684 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~--g~s------~pp~~f--------~~~~fl~~~~~~L~~~Gi 684 (771)
..+||+|+.+.--..... .+. .|...+ .-..+++.+.+.|+|||.
T Consensus 152 -------------------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 152 -------------------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGW 212 (251)
T ss_pred -------------------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCE
Confidence 257999998531100000 000 000000 114788999999999999
Q ss_pred EEEEec
Q 004164 685 FIVNLV 690 (771)
Q Consensus 685 lv~Nl~ 690 (771)
+++...
T Consensus 213 ~~~~~~ 218 (251)
T TIGR03534 213 LLLEIG 218 (251)
T ss_pred EEEEEC
Confidence 999864
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-06 Score=89.97 Aligned_cols=105 Identities=12% Similarity=0.244 Sum_probs=77.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.+...+...+ |..++++||+++.|++.|++.+. .....+++++.+|..++ .
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~----~--------- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----E--------- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----C---------
Confidence 45689999999999988888764 67899999999999999999863 22345799999998764 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
...+|+|++.. . ..- +++.. -..+|+.+.+.|+|||.|++-
T Consensus 120 ----------------------~~~~d~v~~~~--~--l~~--~~~~~--~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 120 ----------------------IKNASMVILNF--T--LQF--LPPED--RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred ----------------------CCCCCEEeeec--c--hhh--CCHHH--HHHHHHHHHHhcCCCeEEEEe
Confidence 12478776521 1 000 11111 257999999999999999976
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=92.79 Aligned_cols=128 Identities=17% Similarity=0.179 Sum_probs=88.3
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
+.+||++|+|.|.++..+...+|..+|++||+||.+++.|++.+.. ..++++.+|..+++....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---~~~~~~~~D~~~~l~~~~------------- 150 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---AGGTVHEGDLYDALPTAL------------- 150 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH---cCCEEEEeechhhcchhc-------------
Confidence 4589999999999999999888888999999999999999998743 125789999877654321
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc--------Cc--------ccHHHHHHHHHccCCCcEE
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA--------DF--------VEGSFLLTVKDALSEQGLF 685 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~--------~f--------~~~~fl~~~~~~L~~~Gil 685 (771)
..+||+|++|.---.....-..+|. .+ +-..++..+.+.|+|+|.+
T Consensus 151 ------------------~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l 212 (251)
T TIGR03704 151 ------------------RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHL 212 (251)
T ss_pred ------------------CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 1469999997521100000000111 11 1257888889999999999
Q ss_pred EEEeccCChhHHHHHHHHHHH
Q 004164 686 IVNLVSRSQATKDMVISRMKM 706 (771)
Q Consensus 686 v~Nl~~~~~~~~~~v~~~l~~ 706 (771)
++-.... ....+...|++
T Consensus 213 ~l~~~~~---~~~~v~~~l~~ 230 (251)
T TIGR03704 213 LVETSER---QAPLAVEAFAR 230 (251)
T ss_pred EEEECcc---hHHHHHHHHHH
Confidence 9765322 23456666655
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-06 Score=88.63 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=97.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH--HHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~--l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|..+..+.+..+ ...|++||++|. . . .+.++++.+|.... +.++..
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~-------~---~~~v~~i~~D~~~~~~~~~i~~-------- 111 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-D-------P---IVGVDFLQGDFRDELVLKALLE-------- 111 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-c-------C---CCCcEEEecCCCChHHHHHHHH--------
Confidence 346899999999999998888764 469999999992 1 1 24589999997753 332210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-----ccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
......||+|+.|....- .|. |..+. +...+|+.+.+.|+|||.|++-++..
T Consensus 112 -------------------~~~~~~~D~V~S~~~~~~--~g~--~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 112 -------------------RVGDSKVQVVMSDMAPNM--SGT--PAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred -------------------HhCCCCCCEEecCCCCcc--CCC--hHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 001367999999763221 111 11110 12578999999999999999976543
Q ss_pred ChhHHHHHHHHHHHhccceEEeeec----CCccEEEEEec
Q 004164 693 SQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLS 728 (771)
Q Consensus 693 ~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~~ 728 (771)
. ....++..++..|..+..++.. +.....++|.+
T Consensus 169 ~--~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~ 206 (209)
T PRK11188 169 E--GFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 206 (209)
T ss_pred c--CHHHHHHHHHhCceEEEEECCccccccCceeEEEeec
Confidence 2 2345789999999998888753 33455666654
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-06 Score=89.19 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=94.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||++|+|+|.++..|....+..+|.+||+++.|++.+.+...- .+++.++.+|+..-.....
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~~~~~----------- 137 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPERYAH----------- 137 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcchhhh-----------
Confidence 345689999999999999999988756899999999988866555421 2468888898753100000
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC------
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------ 693 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~------ 693 (771)
-..+||+|+.|+..++ ....+++.+++.|+|||.|++.+..+.
T Consensus 138 -------------------l~~~~D~i~~d~~~p~------------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~ 186 (226)
T PRK04266 138 -------------------VVEKVDVIYQDVAQPN------------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD 186 (226)
T ss_pred -------------------ccccCCEEEECCCChh------------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCC
Confidence 0145999998753221 014468999999999999998644321
Q ss_pred -hhHHHHHHHHHHHh-ccceEEeeecC--CccEEEEE
Q 004164 694 -QATKDMVISRMKMV-FNHLFCLQLEE--DVNLVLFG 726 (771)
Q Consensus 694 -~~~~~~v~~~l~~v-F~~v~~~~~~~--~~N~Vl~a 726 (771)
....+..++.++++ |..+....... ..+..+++
T Consensus 187 ~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~ 223 (226)
T PRK04266 187 PKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVA 223 (226)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEE
Confidence 12233455777665 77666555432 23444544
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-06 Score=86.66 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=94.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
++.+||.+|+|.|.++..+....+ +|++||++|.+++.|++.+... .-+++++.+|..+..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~---------------- 79 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV---------------- 79 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------------
Confidence 346899999999999998888765 8999999999999999987532 235788888865431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC-----------cCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA-----------ADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp-----------~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+.+.--.........++ ..-.-..|++.+.+.|+|||.+++..
T Consensus 80 -------------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 -------------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred -------------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 146999998531100000000000 01123678999999999999999876
Q ss_pred ccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEe
Q 004164 690 VSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGL 727 (771)
Q Consensus 690 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~ 727 (771)
.+... ...++..|++.-=++-......-.++.+++-
T Consensus 141 ~~~~~--~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 141 SSLNG--EPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred eccCC--hHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 44332 2345666665432333333334445666554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=100.27 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=96.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||++|+|.|..+..+.... +..+|++||+++.+++.+++.+ |+ ..++++.+|+.++.....
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~-------- 318 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHEKFA-------- 318 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccchhc--------
Confidence 34689999999999998888876 5679999999999999999876 44 249999999987633221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC-CcCCcC-c------------ccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-TCPAAD-F------------VEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~-s~pp~~-f------------~~~~fl~~~~~~L~~~ 682 (771)
..||+|++|...+. .|+ ...|.. + +..++|+.+.+.|+||
T Consensus 319 ------------------------~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 319 ------------------------EKFDKILVDAPCSG--LGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred ------------------------ccCCEEEEcCCCCC--CeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46999999974321 121 111111 1 2357899999999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhcc
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFN 709 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 709 (771)
|.+++...+-..+..+.++..+.+-.+
T Consensus 373 G~lvystcs~~~~Ene~vv~~~l~~~~ 399 (444)
T PRK14902 373 GILVYSTCTIEKEENEEVIEAFLEEHP 399 (444)
T ss_pred CEEEEEcCCCChhhhHHHHHHHHHhCC
Confidence 999998877766666667766555444
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.8e-07 Score=94.90 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=78.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
.+.+||+||||+|.++..+.+.+ ..+++++|+++.+++.+++.+.. ..++++++.+|..+. ....++||+|+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999999888875 56899999999999988765422 235788888887553 222478999997
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..+...... . .-....+++.+++.|+|||++++..
T Consensus 152 D~~~~~~~~-~--~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPA-E--TLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcc-c--chhHHHHHHHHHHHhCCCcEEEEcC
Confidence 654221111 1 0013578899999999999999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.1e-07 Score=79.74 Aligned_cols=94 Identities=15% Similarity=0.237 Sum_probs=71.2
Q ss_pred EEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccccc
Q 004164 546 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 625 (771)
Q Consensus 546 LviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (771)
|+||+|.|..+..|... +..+++++|+++.+++.|++.+. ...+.+..+|..++ .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~---~~~~~~~~~d~~~l--~------------------- 55 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK---NEGVSFRQGDAEDL--P------------------- 55 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT---TSTEEEEESBTTSS--S-------------------
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc---ccCchheeehHHhC--c-------------------
Confidence 78999999999999999 77899999999999999999985 35566888886554 1
Q ss_pred cCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-ccHHHHHHHHHccCCCcEEEE
Q 004164 626 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 626 ~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-~~~~fl~~~~~~L~~~Gilv~ 687 (771)
.++..||+|+.- .. -..+ --..+++.+++.|+|||.+++
T Consensus 56 ------------~~~~sfD~v~~~--~~---------~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 56 ------------FPDNSFDVVFSN--SV---------LHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ------------S-TT-EEEEEEE--SH---------GGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------cccccccccccc--cc---------eeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 124789999871 11 0111 236799999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=101.22 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=100.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
+.+||+||+|+|+++..+...+|..+|++||++|.++++|++.... ..+++++++.+|..+.+.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------------- 203 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------------- 203 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc---------------
Confidence 4689999999999999998888989999999999999999988621 124689999999865421
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CCC------CcCCcCcc--------cHHHHHHHHHccCCCcE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM------TCPAADFV--------EGSFLLTVKDALSEQGL 684 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~--~g~------s~pp~~f~--------~~~fl~~~~~~L~~~Gi 684 (771)
..+||+|+.+.---... ..+ .-|..+++ -..+++.+.+.|+|||.
T Consensus 204 -------------------~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~ 264 (506)
T PRK01544 204 -------------------KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGK 264 (506)
T ss_pred -------------------CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCE
Confidence 14699999853100000 000 00122222 23466788889999999
Q ss_pred EEEEeccCChhHHHHHHHHHHHh-ccceEEeeecCCccEEEEEecCC
Q 004164 685 FIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 730 (771)
Q Consensus 685 lv~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~~~ 730 (771)
+++-+- .+. .+.+.+.+.+. |..+..++--.+...++++....
T Consensus 265 l~lEig-~~q--~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~~ 308 (506)
T PRK01544 265 IILEIG-FKQ--EEAVTQIFLDHGYNIESVYKDLQGHSRVILISPIN 308 (506)
T ss_pred EEEEEC-Cch--HHHHHHHHHhcCCCceEEEecCCCCceEEEecccc
Confidence 998653 222 23444555443 44444444344567888887766
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-06 Score=91.35 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=84.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|-++..+.+..+..+|+++|+++.|+++|++...=..-..++++++||.+-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L----------------- 113 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL----------------- 113 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC-----------------
Confidence 578999999999999999999998889999999999999999998421112299999999774
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
+.++..||++.+.- ....+. --+..|+.+.+.|+|||.+++.=.+.
T Consensus 114 ----------------Pf~D~sFD~vt~~f----glrnv~------d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 114 ----------------PFPDNSFDAVTISF----GLRNVT------DIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred ----------------CCCCCccCEEEeee----hhhcCC------CHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 12357899998832 111111 12779999999999999888765444
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=98.70 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=98.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||++|+|.|+.+..+....+..+|+++|+++.+++.+++.+ |+. .++.++.+|+.......
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~~---------- 305 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQWA---------- 305 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeccccccccccc----------
Confidence 446899999999999999999887679999999999999998886 542 23444556654321000
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc-CCcCc-------------ccHHHHHHHHHccCCCc
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC-PAADF-------------VEGSFLLTVKDALSEQG 683 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~-pp~~f-------------~~~~fl~~~~~~L~~~G 683 (771)
....||.|++|+-.+. .|+.. .|... +..++|..+.+.|+|||
T Consensus 306 ---------------------~~~~fD~VllDaPcSg--~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG 362 (426)
T TIGR00563 306 ---------------------ENEQFDRILLDAPCSA--TGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGG 362 (426)
T ss_pred ---------------------cccccCEEEEcCCCCC--CcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1257999999974432 23211 12111 14679999999999999
Q ss_pred EEEEEeccCChhHHHHHHHHHHHhccce
Q 004164 684 LFIVNLVSRSQATKDMVISRMKMVFNHL 711 (771)
Q Consensus 684 ilv~Nl~~~~~~~~~~v~~~l~~vF~~v 711 (771)
.|++..++-.++..+.++..+.+-++..
T Consensus 363 ~lvystcs~~~~Ene~~v~~~l~~~~~~ 390 (426)
T TIGR00563 363 TLVYATCSVLPEENSEQIKAFLQEHPDF 390 (426)
T ss_pred EEEEEeCCCChhhCHHHHHHHHHhCCCC
Confidence 9999998888887888888887777653
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6e-07 Score=90.84 Aligned_cols=106 Identities=23% Similarity=0.298 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcE---------------------------
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMR--------------------------- 119 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~--------------------------- 119 (771)
.+..+|||||-+|.++..+++. |...|.|+||.+..|+.|++.... .....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~-~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF-PCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc-cccccccccCCCcccccccccccccccccccc
Confidence 4678999999999999999998 777899999999999988766532 11111
Q ss_pred -----------------EEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 120 -----------------WRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 120 -----------------~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
+...|+. .+....||+|+|-..--|+. ...+.+++..+|..+.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIH-LNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIH-LNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEe-cccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1111222 23457899999765444332 2223445999999999999999998875
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-06 Score=91.28 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=95.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEe-ecCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVM-DMTS 127 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~-D~~~ 127 (771)
.+.+...+.++... .++..|||.=||||....+..-.|. +++|+|++..|+.-++..+..-+ ....+..+ |+++
T Consensus 182 ~P~lAR~mVNLa~v---~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 182 DPRLARAMVNLARV---KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred CHHHHHHHHHHhcc---ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 44566667777655 6889999999999999988877788 99999999999987755443222 34545555 9999
Q ss_pred CCCCCCCccEEEeccccccccCcccc--hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELG--HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~--~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+++.+||.|+.--.-.--...... ..++.++|+.++++|++||++++...-
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~ 312 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR 312 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 99998899999964332221111111 245889999999999999999998763
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.1e-07 Score=97.76 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHH--h------hcCCCCcEEEEeecCCC-CCCCCCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRR--N------VRDRSDMRWRVMDMTSM-QFMDETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~--~------~~~~~~i~~~~~D~~~l-~~~~~sFDl 137 (771)
...+||++|||.|..+..+.+.+ ..+|++||+++.+++.+++. . .-..++++++.+|+.+. ....++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 45799999999999998888874 46999999999999977641 1 11347899999999874 334578999
Q ss_pred EEeccccccccCcccchHH-HHHHHHHHHHccccCeEEEEEEcC
Q 004164 138 ILDKGGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~-~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+.... +..... .... -..+++.+++.|+|||+|++..-+
T Consensus 230 IIvDl~-DP~~~~--~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 230 IIIDFP-DPATEL--LSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEcCC-Cccccc--hhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 997632 111000 0011 357899999999999999887543
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-06 Score=93.98 Aligned_cols=142 Identities=14% Similarity=0.162 Sum_probs=96.0
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||+||+|.|.++..+....|..+|++||+++.+++.|++.+... .-..+++.+|+...+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-~l~~~~~~~D~~~~~----------------- 258 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-GLEGEVFASNVFSDI----------------- 258 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCEEEEccccccc-----------------
Confidence 34799999999999999999999889999999999999999887421 123467777775421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHH
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 701 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 701 (771)
..+||+|+.+. +-. .|+. ...-....|++.+.+.|+|||.|++-. .+.-. +.
T Consensus 259 ------------------~~~fDlIvsNP--PFH-~g~~--~~~~~~~~~i~~a~~~LkpgG~L~iVa-n~~l~-y~--- 310 (342)
T PRK09489 259 ------------------KGRFDMIISNP--PFH-DGIQ--TSLDAAQTLIRGAVRHLNSGGELRIVA-NAFLP-YP--- 310 (342)
T ss_pred ------------------CCCccEEEECC--Ccc-CCcc--ccHHHHHHHHHHHHHhcCcCCEEEEEE-eCCCC-hH---
Confidence 25699999942 111 0110 000123789999999999999886522 23222 22
Q ss_pred HHHHHhccceEEeeecCCccEEEEEecCC
Q 004164 702 SRMKMVFNHLFCLQLEEDVNLVLFGLSSE 730 (771)
Q Consensus 702 ~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~ 730 (771)
..+.+.|.++-.+. .+..=.|+-|.+..
T Consensus 311 ~~l~~~Fg~~~~la-~~~~f~v~~a~~~~ 338 (342)
T PRK09489 311 DLLDETFGSHEVLA-QTGRFKVYRAIMTR 338 (342)
T ss_pred HHHHHHcCCeEEEE-eCCCEEEEEEEccC
Confidence 34556898875554 44445667666543
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.8e-07 Score=90.55 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=82.9
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCC---CCCCCCccEEEeccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM---QFMDETFDVILDKGG 143 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~-~~~i~~~~~D~~~l---~~~~~sFDlVi~~~~ 143 (771)
...+||||||.|.+...+|.. +-.+++|+|++...+..+.++.... ..|+.++++|+..+ -++++++|-|+....
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 348999999999999999987 4469999999999999888777554 47999999999883 256789999986443
Q ss_pred cccccCcccc-hHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 144 LDALMEPELG-HKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 144 l~~l~~~~~~-~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
=-|....... .-.-..++..++++|+|||.+.+.|-..+..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~ 139 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYA 139 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHH
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 2221110000 0115689999999999999999998765443
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-06 Score=89.50 Aligned_cols=116 Identities=21% Similarity=0.250 Sum_probs=92.8
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (771)
..+..++.. .|+.+|||.|.|+|.++..|+.. | .++|+..|+.+...+.|++.+...+ .++++...|+.+.-+
T Consensus 84 ~~I~~~~gi---~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 84 GYIVARLGI---SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHHcCC---CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 345566554 79999999999999999999975 4 4899999999999999987776533 348999999999766
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhc
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~ 186 (771)
++ .||.|+. + ++++- +++..+...|+|||.++|...+-+.+.+
T Consensus 161 ~~-~vDav~L----D-mp~PW-------~~le~~~~~Lkpgg~~~~y~P~veQv~k 203 (256)
T COG2519 161 EE-DVDAVFL----D-LPDPW-------NVLEHVSDALKPGGVVVVYSPTVEQVEK 203 (256)
T ss_pred cc-ccCEEEE----c-CCChH-------HHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence 65 8999984 3 34444 8899999999999999998876555443
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-07 Score=81.14 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=69.6
Q ss_pred EEEEeccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 545 AVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 545 vLviGlG~G~l~~~L~~~~---p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
||+||+|+|...+.+...+ |..++++||+|+.+++.|++++.- ...+++++++|..++- ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~~~~~~~~D~~~l~-~~-------------- 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGPKVRFVQADARDLP-FS-------------- 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTTTSEEEESCTTCHH-HH--------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCCceEEEECCHhHCc-cc--------------
Confidence 7999999999999999887 447999999999999999999832 2237899999998752 21
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc---cHHHHHHHHHccCCCc
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQG 683 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~---~~~fl~~~~~~L~~~G 683 (771)
..+||+|+. . +. ....|. -..+|+.+.++|+|||
T Consensus 65 ------------------~~~~D~v~~----~----~~--~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 ------------------DGKFDLVVC----S----GL--SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ------------------SSSEEEEEE---------TT--GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ------------------CCCeeEEEE----c----CC--ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 258999998 1 00 012222 2678999999999998
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.8e-07 Score=91.50 Aligned_cols=106 Identities=23% Similarity=0.256 Sum_probs=70.1
Q ss_pred CCCeEEEEcCCcchhH----HHHHhc-----C-CCeEEEEcCCHHHHHHHHHHh------h-------------cC----
Q 004164 68 PPPQILVPGCGNSRLS----EHLYDA-----G-FHGITNVDFSKVVISDMLRRN------V-------------RD---- 114 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls----~~La~~-----g-~~~V~~vDiS~~~i~~~~~~~------~-------------~~---- 114 (771)
+..+|+..||++|.-. ..|.+. + .-+|+|+|+|+.+|+.|++-. . ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5689999999999654 333341 2 138999999999999886421 0 00
Q ss_pred ------CCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 115 ------RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 115 ------~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
...++|...|+.+.+...+.||+|+|..+|-++.... ..++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-----QQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-----HHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-----HHHHHHHHHHHcCCCCEEEEec
Confidence 1468999999999444568999999999999986544 7899999999999999998853
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-06 Score=98.17 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=99.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||++|+|.|..+.++....+ ..+|++||+++.+++.+++.+ |+ ++++++.+|+..+. .
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~---~-------- 315 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS---P-------- 315 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc---c--------
Confidence 346899999999999888887764 358999999999999999887 44 36899999997752 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC---c-----------ccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD---F-----------VEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~---f-----------~~~~fl~~~~~~L~~~ 682 (771)
...||+|++|+-.+. .|+.+-.+. . ....+|..+.+.|+||
T Consensus 316 -----------------------~~~fD~Vl~D~Pcsg--~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 316 -----------------------EEQPDAILLDAPCTG--TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred -----------------------CCCCCEEEEcCCCCC--cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 246999999874331 222211111 1 1346899999999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhccc
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFNH 710 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 710 (771)
|.+++...+-.++..+.++..+.+..+.
T Consensus 371 G~lvystcs~~~~Ene~~v~~~l~~~~~ 398 (445)
T PRK14904 371 GVLVYATCSIEPEENELQIEAFLQRHPE 398 (445)
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 9999999888888878888877766554
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=90.52 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=82.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|.|.++..+...+|..++++||+++.+++.|++.+. ++++++.+|..+..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~---------------- 93 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP---------------- 93 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC----------------
Confidence 4578999999999999999999998899999999999999999875 37888889876531
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....+||+|+....-. .. . -...+|+.+++.|+|||.+++.....
T Consensus 94 -----------------~~~~~fD~vi~~~~l~----~~----~--~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 94 -----------------LEDSSFDLIVSNLALQ----WC----D--DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred -----------------CCCCceeEEEEhhhhh----hc----c--CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 0135799999842111 00 0 12679999999999999999876544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.6e-07 Score=94.07 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=77.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|+++.++.+.+ +++|++|.++++-.+.|++.. |+ .++++|..+|-.++ .
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~----~-------- 125 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDL----P-------- 125 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG--------------
T ss_pred CCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeecccc----C--------
Confidence 456799999999999999999998 579999999999999999887 44 57899999997654 2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
.+||.|+. .+|...-..=.-+.|++.+.+.|+|||.+++..++....
T Consensus 126 ------------------------~~fD~IvS--------i~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 126 ------------------------GKFDRIVS--------IEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDP 172 (273)
T ss_dssp -------------------------S-SEEEE--------ESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred ------------------------CCCCEEEE--------EechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 47999885 122111111123789999999999999999987765443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-06 Score=86.96 Aligned_cols=120 Identities=11% Similarity=0.101 Sum_probs=82.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC-
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM- 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l- 128 (771)
..+.+.+..++.. ..++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++.+...+ .+++++++|+.+.
T Consensus 38 d~v~e~l~~~l~~--~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 38 DRVRETLFNWLAP--VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred HHHHHHHHHHHhh--hcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 3444445555532 12567999999999999987666666799999999999987765543333 4689999998763
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHH--ccccCeEEEEEEcC
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLA 180 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~r--vLkpGG~~ii~~~~ 180 (771)
+...++||+|+..-.... . ....++..+.. +|+|+|.+++....
T Consensus 116 ~~~~~~fDlV~~DPPy~~--g------~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRK--G------LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred hhcCCCceEEEECCCCCC--C------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 222457999997665321 1 13455565555 47899988877654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=86.91 Aligned_cols=105 Identities=22% Similarity=0.217 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC----CCCcEEEEeecCCCC----CCCCCccE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQ----FMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~----~~~i~~~~~D~~~l~----~~~~sFDl 137 (771)
.++.+|||+|||+|..+..++.. +..+|+..|.++ .++.++...... ..++.+...|..+.. .+..+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 46789999999999999999998 667999999999 888775554433 256888888775521 34568999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|+...++|.-. ....++.-+.++|+++|.+++..-
T Consensus 123 IlasDv~Y~~~-------~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDEE-------LFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-GG-------GHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchHH-------HHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999999632 267999999999999988655543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=94.72 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC-CCCCccEEEec
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF-MDETFDVILDK 141 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~-~~~sFDlVi~~ 141 (771)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.+++.....+ .+++|+++|+.++.. ..+.||+|+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 468999999999999999999874 99999999999998876664444 479999999987532 23579999975
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=92.02 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=80.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++..|...+ ..+|++||+++.+++.|++.+.. .++++++.+|..+. .
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~----~----------- 112 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK----D----------- 112 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC----C-----------
Confidence 345789999999999988887765 45999999999999999998753 46799999987531 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
..+..||+|+. ++... + +... -..+|+.+.+.|+|||.|++.-+.
T Consensus 113 ------------------~~~~~FD~V~s~~~l~h-----~--~~~d--~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 113 ------------------FPENTFDMIYSRDAILH-----L--SYAD--KKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred ------------------CCCCCeEEEEEhhhHHh-----C--CHHH--HHHHHHHHHHHcCCCcEEEEEEec
Confidence 11367999997 32111 0 0111 267999999999999999987553
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-06 Score=91.88 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=79.6
Q ss_pred CCeEEEEcCCcchhH----HHHHhc-C----CCeEEEEcCCHHHHHHHHHHh------------------hc--------
Q 004164 69 PPQILVPGCGNSRLS----EHLYDA-G----FHGITNVDFSKVVISDMLRRN------------------VR-------- 113 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls----~~La~~-g----~~~V~~vDiS~~~i~~~~~~~------------------~~-------- 113 (771)
..+|+..||+||.-. ..+.+. + .-+|+|+|+|+.+|+.|++-. ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999654 333332 1 137999999999999886531 00
Q ss_pred ------CCCCcEEEEeecCCCCCC-CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 114 ------DRSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 114 ------~~~~i~~~~~D~~~l~~~-~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
-...+.|...|+.+.+++ .+.||+|+|.+++.++.... ..+++..+++.|+|||+|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT-----QERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH-----HHHHHHHHHHHhCCCcEEEEeC
Confidence 013578999999886543 57899999999999886544 7899999999999999877653
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.1e-06 Score=83.64 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=92.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH--HHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~--l~~~~~~~~~~~~ 616 (771)
....+||+||+|+|.++..+...+ +..+|++||++|.+ .. +.++++.+|..+. +.....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~---~~i~~~~~d~~~~~~~~~l~~------- 92 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI---ENVDFIRGDFTDEEVLNKIRE------- 92 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC---CCceEEEeeCCChhHHHHHHH-------
Confidence 345689999999999988888776 45689999999964 11 3578888886532 111110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc----ccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f----~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.....+||+|+.|... +..|..+. ... ....++..+.+.|+|||.+++.....
T Consensus 93 --------------------~~~~~~~D~V~~~~~~--~~~g~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 93 --------------------RVGDDKVDVVMSDAAP--NISGYWDI-DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred --------------------HhCCCCccEEEcCCCC--CCCCCccc-cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 0013579999997521 11111000 001 12578999999999999999976432
Q ss_pred ChhHHHHHHHHHHHhccceEEeee--cCCcc--EEEEEe
Q 004164 693 SQATKDMVISRMKMVFNHLFCLQL--EEDVN--LVLFGL 727 (771)
Q Consensus 693 ~~~~~~~v~~~l~~vF~~v~~~~~--~~~~N--~Vl~a~ 727 (771)
.....++..++..|..+...+. ..+.| .+++|.
T Consensus 150 --~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 150 --EEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred --ccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 2234578888888976666553 33444 466664
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-06 Score=91.07 Aligned_cols=119 Identities=12% Similarity=0.177 Sum_probs=84.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||++|+|+|.++..+... +..+|++||+||.+++.|++.+... -.+++.++.+|... ..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~----~~----------- 222 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ----PI----------- 222 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc----cc-----------
Confidence 3478999999999999887765 4458999999999999999987432 13456666665211 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
..+||+|+.++... . -..++..+.+.|+|||.|++--+.. .....
T Consensus 223 --------------------~~~fDlVvan~~~~-----------~--l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~ 267 (288)
T TIGR00406 223 --------------------EGKADVIVANILAE-----------V--IKELYPQFSRLVKPGGWLILSGILE--TQAQS 267 (288)
T ss_pred --------------------CCCceEEEEecCHH-----------H--HHHHHHHHHHHcCCCcEEEEEeCcH--hHHHH
Confidence 25799999854211 1 1578999999999999999865433 33456
Q ss_pred HHHHHHHhccc
Q 004164 700 VISRMKMVFNH 710 (771)
Q Consensus 700 v~~~l~~vF~~ 710 (771)
+.+.+++.|.-
T Consensus 268 v~~~~~~~f~~ 278 (288)
T TIGR00406 268 VCDAYEQGFTV 278 (288)
T ss_pred HHHHHHccCce
Confidence 67777766543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-06 Score=81.95 Aligned_cols=119 Identities=16% Similarity=0.203 Sum_probs=98.2
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~ 127 (771)
-+-+++.+..-+.. ..+.-|||+|.|||.++..+..+|. .+++++++|+.......++. +...++.+|+.+
T Consensus 33 Ss~lA~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----p~~~ii~gda~~ 105 (194)
T COG3963 33 SSILARKMASVIDP---ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----PGVNIINGDAFD 105 (194)
T ss_pred cHHHHHHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----CCccccccchhh
Confidence 34456666666664 6778999999999999999999864 68999999999998776554 777899999988
Q ss_pred CC-----CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 128 MQ-----FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 128 l~-----~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+. +.+..||.|++.-.+-.++... .-++++.+...|.+||.++..+|+
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~-----~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHR-----RIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHH-----HHHHHHHHHHhcCCCCeEEEEEec
Confidence 74 6678899999988777776443 668999999999999999999998
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-08 Score=87.88 Aligned_cols=96 Identities=19% Similarity=0.265 Sum_probs=58.0
Q ss_pred EEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCC---CeeEEEcchHHHHHhhccCCccccccccccc
Q 004164 546 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDK---SLKVHITDGIKFVREMKSSSATDEMSVVHGN 622 (771)
Q Consensus 546 LviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~---r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 622 (771)
|+||+|+|.+...+...+|..++++||++|.+++.|++.+.-.... ++++...|..+. .
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------- 62 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY---D--------------- 62 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C---C---------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc---c---------------
Confidence 6899999999999999999999999999999999998888422222 233322222211 0
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEE
Q 004164 623 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 685 (771)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gil 685 (771)
...+||+|+. .+. ..-+ + --..+|+++++.|+|||+|
T Consensus 63 ----------------~~~~fD~V~~--~~v--l~~l----~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 63 ----------------PPESFDLVVA--SNV--LHHL----E--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----------------C----SEEEE--E-T--TS------S---HHHHHHHHTTT-TSS-EE
T ss_pred ----------------cccccceehh--hhh--Hhhh----h--hHHHHHHHHHHHcCCCCCC
Confidence 1258999997 111 1111 1 2268999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-06 Score=94.56 Aligned_cols=110 Identities=11% Similarity=0.158 Sum_probs=79.0
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-C-CCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-D-KSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-~-~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+||++|+|+|+++..+... +..+|++||+++.+++.|++.+.+.. + ++++++.+|+.+++++...
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---------- 289 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------- 289 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh----------
Confidence 478999999999986554432 34599999999999999999984421 2 4799999999999977541
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-----cHHHHHHHHHccCCCcEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-----~~~fl~~~~~~L~~~Gilv~ 687 (771)
.+.+||+||+|...-... ...+. -.++++.+.++|+|||+|+.
T Consensus 290 -------------------~~~~fDlVilDPP~f~~~------k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 290 -------------------RGEKFDVIVMDPPKFVEN------KSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred -------------------cCCCCCEEEECCCCCCCC------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 135799999975322110 00111 13456678899999999986
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=89.12 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=73.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||++|+|.|.++.+|.+. ..+|++||+++.+++.|++...-..-.+++++++|..++ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--~~------------- 92 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL--TF------------- 92 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC--Cc-------------
Confidence 3478999999999999999886 358999999999999999876322223578888886543 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
...||+|+.=. . .. .+++.. ...+++.+++.|+|||.+++
T Consensus 93 -------------------~~~fD~I~~~~--~--~~--~~~~~~--~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 93 -------------------DGEYDFILSTV--V--LM--FLEAKT--IPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -------------------CCCcCEEEEec--c--hh--hCCHHH--HHHHHHHHHHHcCCCcEEEE
Confidence 14699998611 1 00 001111 26899999999999998543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-06 Score=95.15 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=79.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+.+||+||+|.|.++..|...+ ..+|++||+++.+++.|++...- ...++++++++|+.+. .
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~----~----------- 181 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ----P----------- 181 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC----C-----------
Confidence 45789999999999999999877 56999999999999999887521 1245799999998653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
..+..||+|+.-. +. .-+ + -...+++.+.+.|+|||.|++-.++
T Consensus 182 ------------------~~~~~FD~V~s~~-~~---~h~----~--d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 182 ------------------FEDGQFDLVWSME-SG---EHM----P--DKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred ------------------CCCCCccEEEECC-ch---hcc----C--CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 1136799998711 11 101 1 1267999999999999999986543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=106.55 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=81.3
Q ss_pred CCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC-----------------CCcEEEEeecCCCCC
Q 004164 69 PPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-----------------SDMRWRVMDMTSMQF 130 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~-----------------~~i~~~~~D~~~l~~ 130 (771)
+.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.+.... .+++|+++|+.+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999998874 3689999999999998765553321 368999999987431
Q ss_pred C-CCCccEEEecccc----------------------------ccccC---cccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 131 M-DETFDVILDKGGL----------------------------DALME---PELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 131 ~-~~sFDlVi~~~~l----------------------------~~l~~---~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
. ..+||+|+++-.- .++.. .+++...+++++.+..++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 1369999975321 01111 13445568999999999999999888654
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.7e-07 Score=94.31 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=72.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
..+.+||++|+|+|.++..|.+.. |..+|++||+++.|+++|++...-....+++++++|+.+. .
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l--p------------ 111 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL--P------------ 111 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----------------
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh--c------------
Confidence 456799999999999998888775 5679999999999999999886321124899999999764 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-cHHHHHHHHHccCCCcEEEEEeccC
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+..||+|.+=- |+ ..+- -...|+.+.+.|+|||.|++-=.++
T Consensus 112 -------------------~~d~sfD~v~~~f-------gl----rn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 112 -------------------FPDNSFDAVTCSF-------GL----RNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp -------------------S-TT-EEEEEEES--------G----GG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred -------------------CCCCceeEEEHHh-------hH----HhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 1247899999721 11 1111 3679999999999999888643333
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.5e-07 Score=90.68 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=73.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||.||.|+|..+..|...... ..|++||++|.+++.|++.+.-..-.++.++++||..-...
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~------------ 138 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE------------ 138 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG------------
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc------------
Confidence 34579999999999999999988654 47999999999999999998321224799999999764322
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
...||.|++..-..+ .| ..+.+.|++||.+|+-+-.
T Consensus 139 ---------------------~apfD~I~v~~a~~~-------ip---------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 139 ---------------------EAPFDRIIVTAAVPE-------IP---------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp ---------------------G-SEEEEEESSBBSS------------------HHHHHTEEEEEEEEEEESS
T ss_pred ---------------------CCCcCEEEEeeccch-------HH---------HHHHHhcCCCcEEEEEEcc
Confidence 246999999542221 11 3355669999999998753
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=91.42 Aligned_cols=88 Identities=9% Similarity=0.158 Sum_probs=70.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
+.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... .++++++++|+.++++
T Consensus 15 ~~~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCc
Confidence 3445555555543 5678999999999999999999865 899999999999988766633 4689999999998876
Q ss_pred CCCCccEEEeccccc
Q 004164 131 MDETFDVILDKGGLD 145 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~ 145 (771)
+ .||.|+++-..+
T Consensus 90 ~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 P--EFNKVVSNLPYQ 102 (258)
T ss_pred h--hceEEEEcCCcc
Confidence 5 489999876654
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.8e-06 Score=93.97 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=95.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|.|..+..+....+..+|+++|+++.+++.+++.+.-. +-+++++.+|+.+......
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-g~~~~~~~~D~~~~~~~~~------------ 310 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-GLKATVIVGDARDPAQWWD------------ 310 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEcCcccchhhcc------------
Confidence 456899999999999999998887679999999999999999887321 1236899999976422111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCCCcEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~~Gilv 686 (771)
..+||.|++|.-.+. .|.....+.. ....+|+.+.+.|+|||.++
T Consensus 311 -------------------~~~fD~Vl~D~Pcs~--~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv 369 (427)
T PRK10901 311 -------------------GQPFDRILLDAPCSA--TGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL 369 (427)
T ss_pred -------------------cCCCCEEEECCCCCc--ccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 256999999984331 2221111111 12478999999999999999
Q ss_pred EEeccCChhHHHHHHHHHHHhcc
Q 004164 687 VNLVSRSQATKDMVISRMKMVFN 709 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~vF~ 709 (771)
+...+-.....+.++..+.+-.+
T Consensus 370 ystcs~~~~Ene~~v~~~l~~~~ 392 (427)
T PRK10901 370 YATCSILPEENEQQIKAFLARHP 392 (427)
T ss_pred EEeCCCChhhCHHHHHHHHHhCC
Confidence 98876666555566655554333
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=91.23 Aligned_cols=123 Identities=19% Similarity=0.213 Sum_probs=91.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....++|+||+|.|++..++.+.+ +++|++|.++++..+.|++.+ |+ ..+++|...|=.++
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~------------- 134 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDF------------- 134 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEecccccc-------------
Confidence 456899999999999999999998 789999999999999999977 65 35899998987776
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
.++||-|+. .++.--... .-+.|++.+++.|+|||.+++..+.....
T Consensus 135 -----------------------~e~fDrIvSvgmfEhvg~~---------~~~~ff~~~~~~L~~~G~~llh~I~~~~~ 182 (283)
T COG2230 135 -----------------------EEPFDRIVSVGMFEHVGKE---------NYDDFFKKVYALLKPGGRMLLHSITGPDQ 182 (283)
T ss_pred -----------------------ccccceeeehhhHHHhCcc---------cHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence 245999984 222211111 23899999999999999999887765432
Q ss_pred HH-HHHHHHHHHhccc
Q 004164 696 TK-DMVISRMKMVFNH 710 (771)
Q Consensus 696 ~~-~~v~~~l~~vF~~ 710 (771)
.. ....-..+-+||.
T Consensus 183 ~~~~~~~~i~~yiFPg 198 (283)
T COG2230 183 EFRRFPDFIDKYIFPG 198 (283)
T ss_pred ccccchHHHHHhCCCC
Confidence 21 2222333556774
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.9e-06 Score=89.19 Aligned_cols=95 Identities=24% Similarity=0.354 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
...++||||+|.|..+..|+.. +.+|++++.|+.|....+++ + .+ +.|..+..-.+.+||+|.+-.+|+..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g--~~--vl~~~~w~~~~~~fDvIscLNvLDRc 164 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G--FT--VLDIDDWQQTDFKFDVISCLNVLDRC 164 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C--Ce--EEehhhhhccCCceEEEeehhhhhcc
Confidence 4578999999999999999765 67999999999876655433 2 22 23333333335689999999999988
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..|. .+|+.+++.|+|+|++++.-
T Consensus 165 ~~P~-------~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 165 DRPL-------TLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CCHH-------HHHHHHHHHhCCCCEEEEEE
Confidence 7766 89999999999999988764
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=101.54 Aligned_cols=110 Identities=18% Similarity=0.128 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHH--hh------cCCCCcEEEEeecCCC-CCCCCCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRR--NV------RDRSDMRWRVMDMTSM-QFMDETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~--~~------~~~~~i~~~~~D~~~l-~~~~~sFDl 137 (771)
+..+|||+|||+|..+.++.+.+. .+|+++|+++.+++.+++. .. -..++++++..|..+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 467999999999999999988754 6999999999999988662 11 1236899999998874 233478999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|++...-....... .-.-+.+++.+++.|+|||++++...
T Consensus 377 Ii~D~~~~~~~~~~--~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 377 IIVDLPDPSNPALG--KLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEeCCCCCCcchh--ccchHHHHHHHHHhcCCCeEEEEecC
Confidence 99864322211000 00124688999999999999988653
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-06 Score=92.81 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=67.9
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (771)
.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... ++++++++|+.+++++
T Consensus 29 ~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 29 NILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCHH
Confidence 444555565543 5778999999999999999999876 999999999999988765532 6899999999998765
Q ss_pred CCCccEEEeccc
Q 004164 132 DETFDVILDKGG 143 (771)
Q Consensus 132 ~~sFDlVi~~~~ 143 (771)
+-.+|.|+++-.
T Consensus 103 ~~~~~~vv~NlP 114 (272)
T PRK00274 103 ELQPLKVVANLP 114 (272)
T ss_pred HcCcceEEEeCC
Confidence 433588887644
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.5e-06 Score=88.06 Aligned_cols=113 Identities=13% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++..+....+ .+|++||+||.+++.|++.+.... ..++.+..+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------------------- 176 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------------------- 176 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------------
Confidence 3467899999999999988777543 379999999999999999874311 112222111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHH
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 698 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 698 (771)
+.+||+|+.++... .-..++..+.+.|+|||.|++.-+.. ....
T Consensus 177 ---------------------~~~fD~Vvani~~~-------------~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~ 220 (250)
T PRK00517 177 ---------------------DLKADVIVANILAN-------------PLLELAPDLARLLKPGGRLILSGILE--EQAD 220 (250)
T ss_pred ---------------------CCCcCEEEEcCcHH-------------HHHHHHHHHHHhcCCCcEEEEEECcH--hhHH
Confidence 12599999854221 12578899999999999999864333 2234
Q ss_pred HHHHHHHHh-cc
Q 004164 699 MVISRMKMV-FN 709 (771)
Q Consensus 699 ~v~~~l~~v-F~ 709 (771)
.+...+++. |.
T Consensus 221 ~v~~~l~~~Gf~ 232 (250)
T PRK00517 221 EVLEAYEEAGFT 232 (250)
T ss_pred HHHHHHHHCCCE
Confidence 566666665 44
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.9e-06 Score=95.56 Aligned_cols=121 Identities=9% Similarity=0.101 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC----CCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM----QFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l----~~~~~sFDlVi~~ 141 (771)
.++.+|||+|||+|.++..|++... +|+++|+++.+++.+++.+...+ .+++|+.+|+.+. ++.+++||+|+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 4568999999999999999998754 89999999999998877654433 5799999998753 2345679999953
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEE
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMS 199 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~ 199 (771)
-.=..+ ...+++.+.+ ++|++.++++ .....+...+......+|.+.
T Consensus 370 PPr~G~---------~~~~l~~l~~-l~~~~ivyvs-c~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 PPRKGC---------AAEVLRTIIE-LKPERIVYVS-CNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred cCCCCC---------CHHHHHHHHh-cCCCEEEEEc-CCHHHHHHHHHHHHHCCeeEE
Confidence 321110 1355665554 7888765554 333333333333334456554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-06 Score=89.94 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=77.6
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
++||+||+|.|.+...+...+|..+++++|+++.+++.|++.+.- ..+++++++.+|..+. .
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~------------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----P------------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----C-------------
Confidence 369999999999999998888888999999999999999998721 1256789998886432 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...+||+|+.-- +.+.... ...+|+.+++.|+|||.+++--
T Consensus 64 -----------------~~~~fD~I~~~~--------~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 -----------------FPDTYDLVFGFE--------VIHHIKD--KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred -----------------CCCCCCEeehHH--------HHHhCCC--HHHHHHHHHHHcCCCCEEEEEE
Confidence 014699998511 1111111 3789999999999999999754
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.8e-06 Score=87.73 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=90.1
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCC-CcEEEEeecCCC---CCCCCCccEEEeccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSM---QFMDETFDVILDKGG 143 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~-~i~~~~~D~~~l---~~~~~sFDlVi~~~~ 143 (771)
...+||||||.|.+...+|.. +-.+++||++....+..+.++..+.+- |+.+++.|+..+ -+++++.|-|.....
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 368999999999999999988 447899999999999999999888776 999999999875 245569999986543
Q ss_pred cccccCccc-chHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 144 LDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 144 l~~l~~~~~-~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
=-|.-.-.. -.-.....++.+.++|+|||.+.+.|-..+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~ 170 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYF 170 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHH
Confidence 322211110 00125689999999999999999998765443
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-05 Score=85.60 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=92.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHH----HHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLT----MLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~----v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
....+||.||+|.|.++..+..... .-.|.+||+++. ++++|++. +++..+++|+..-. ...
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------~NI~~I~~Da~~p~-~y~------ 197 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------PNIVPIIEDARYPQ-KYR------ 197 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCCEEEECCccChh-hhh------
Confidence 3446899999999999999999874 348999999986 55666533 45788999976321 111
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC-
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS- 693 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~- 693 (771)
.....+|+|++|+...|. ...++.+++..|+|+|.|++-+-.++
T Consensus 198 -----------------------~~~~~vDvV~~Dva~pdq------------~~il~~na~r~LKpGG~~vI~ika~~i 242 (293)
T PTZ00146 198 -----------------------MLVPMVDVIFADVAQPDQ------------ARIVALNAQYFLKNGGHFIISIKANCI 242 (293)
T ss_pred -----------------------cccCCCCEEEEeCCCcch------------HHHHHHHHHHhccCCCEEEEEEecccc
Confidence 001469999999843221 14566789999999999998432221
Q ss_pred -----h-hHHHHHHHHHHHh-ccceEEeeec--CCccEEEEEecC
Q 004164 694 -----Q-ATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGLSS 729 (771)
Q Consensus 694 -----~-~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~~~ 729 (771)
+ +....-++.|++. |..+-.+.++ ...+.++++...
T Consensus 243 d~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 243 DSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYR 287 (293)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence 1 1122235778887 8854444433 334555665443
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-06 Score=87.05 Aligned_cols=132 Identities=20% Similarity=0.319 Sum_probs=92.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeec
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~ 125 (771)
|+.=...+..++.. .|+.+|||.|.|+|.++..|+.. +.++|+..|+.+...+.|++.+...+ .++++...|+
T Consensus 25 YpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 25 YPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp -HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred eCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 33334556677665 79999999999999999999976 34799999999999999988876655 4789999999
Q ss_pred CCCCCC---CCCccEEEeccccccccCcccchHHHHHHHHHHHHcc-ccCeEEEEEEcCcchhhcchhhhhccCc
Q 004164 126 TSMQFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL-KSGGKFVCLTLAESHVLGLLFPKFRFGW 196 (771)
Q Consensus 126 ~~l~~~---~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvL-kpGG~~ii~~~~~~~~~~~l~~~~~~~w 196 (771)
.+..|+ +..||.|+. | ++++- .++..+.+.| ++||++++...+-+.+.+.+...-..+|
T Consensus 102 ~~~g~~~~~~~~~DavfL----D-lp~Pw-------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFL----D-LPDPW-------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp GCG--STT-TTSEEEEEE----E-SSSGG-------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred ecccccccccCcccEEEE----e-CCCHH-------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 865453 367999984 3 34444 6799999999 8999999988775554443333223354
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-05 Score=82.42 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=79.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+.+||++|+|.|.++..+....|. .+++++|+++.+++.+++.+. ...+++++.+|..+.. .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~--~------------ 102 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP--F------------ 102 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC--C------------
Confidence 5679999999999998888888775 699999999999999999886 3567899999887642 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
...+||+|++...-. . ... -..+++.+++.|+|||.+++-
T Consensus 103 -------------------~~~~~D~i~~~~~~~----~----~~~--~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 103 -------------------EDNSFDAVTIAFGLR----N----VTD--IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred -------------------CCCcEEEEEEeeeeC----C----ccc--HHHHHHHHHHHcCCCcEEEEE
Confidence 125799998732111 1 111 257999999999999999863
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.3e-06 Score=86.71 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=74.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++.++.... .++++||+++.+++.|++.+.-..-.+++++.+|+.+.+.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------------- 140 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-------------- 140 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC--------------
Confidence 345789999999999888887775 3799999999999999998732112348999999754211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
....||+|+++... ..+.+.+.+.|+|||.+++.+.
T Consensus 141 -------------------~~~~fD~I~~~~~~----------------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 -------------------AYAPFDRILVTAAA----------------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -------------------cCCCcCEEEEccCc----------------hhhhHHHHHhcCCCcEEEEEEc
Confidence 12569999996411 1223556789999999999875
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.2e-06 Score=84.99 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=75.7
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|+|+++..+..... .+|++||+|+..+++|++.+....-++++++.+|..+++...
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~-------------- 118 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP-------------- 118 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc--------------
Confidence 35899999999999875333332 599999999999999999863222246999999999887532
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHc--cCCCcEEEEEec
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDA--LSEQGLFIVNLV 690 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~--L~~~Gilv~Nl~ 690 (771)
...||+|++|.- ...| +..+.++.+... |.++|++++-..
T Consensus 119 ------------------~~~fDlV~~DPP---y~~g--------~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 119 ------------------GTPHNVVFVDPP---FRKG--------LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ------------------CCCceEEEECCC---CCCC--------hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 145999999531 0111 245666766664 789999997653
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8e-06 Score=79.53 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
...-+||||||+|..+..|+.. +...+.++|+++.+++..++.+..++-++..++.|+..- ...++.|+++.+-..-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 3567999999999999999887 445788999999999877777766667788899988763 2348889888543221
Q ss_pred --------------cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEee
Q 004164 146 --------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 202 (771)
Q Consensus 146 --------------~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~ 202 (771)
+.....++.+...+++..+-.+|.|.|.|++.....+...+-+...-..+|..++..
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEE
Confidence 112223344457889999999999999999998875554333322224467666543
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.9e-06 Score=76.68 Aligned_cols=110 Identities=11% Similarity=0.163 Sum_probs=76.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcch-hHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSR-LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~-ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
.+...+.+.+.. ..+.+|||||||.|. ++..|++.|+ +|+++|+++.+++.+++. .+.+++.|+.+-++
T Consensus 3 ~i~~~l~~~~~~---~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 3 TIAEFIAENYEK---GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHHhccc---ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh------CCeEEECcCCCCCH
Confidence 345556665543 356899999999995 8899998888 999999999998877544 37889999988653
Q ss_pred C-CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 131 M-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 131 ~-~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
. -+.+|+|.+.. +.++ +...+-++.+.+ |.-+++..++.+.
T Consensus 73 ~~y~~a~liysir-----pp~e-----l~~~~~~la~~~--~~~~~i~~l~~e~ 114 (134)
T PRK04148 73 EIYKNAKLIYSIR-----PPRD-----LQPFILELAKKI--NVPLIIKPLSGEE 114 (134)
T ss_pred HHHhcCCEEEEeC-----CCHH-----HHHHHHHHHHHc--CCCEEEEcCCCCC
Confidence 3 35688888532 2222 344455555444 4457777776544
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.5e-06 Score=86.05 Aligned_cols=125 Identities=19% Similarity=0.246 Sum_probs=91.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHH--HHHhhccCCcc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIK--FVREMKSSSAT 613 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~--~l~~~~~~~~~ 613 (771)
....+||.-|.|.|+|+.+|... .|.-+|...|+.++-++.|++.| |+ ++++++++.|-.+ |..+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl--~~~v~~~~~Dv~~~g~~~~------- 109 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL--DDNVTVHHRDVCEEGFDEE------- 109 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--CTTEEEEES-GGCG--STT-------
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--CCCceeEecceeccccccc-------
Confidence 45679999999999999988864 57779999999999999999998 55 5689999999752 2011
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHcc-CCCcEEEEEeccC
Q 004164 614 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL-SEQGLFIVNLVSR 692 (771)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L-~~~Gilv~Nl~~~ 692 (771)
-...+|+||+|+-++ .+.+..+.+.| ++||.+++-+ +
T Consensus 110 -------------------------~~~~~DavfLDlp~P---------------w~~i~~~~~~L~~~gG~i~~fs--P 147 (247)
T PF08704_consen 110 -------------------------LESDFDAVFLDLPDP---------------WEAIPHAKRALKKPGGRICCFS--P 147 (247)
T ss_dssp --------------------------TTSEEEEEEESSSG---------------GGGHHHHHHHE-EEEEEEEEEE--S
T ss_pred -------------------------ccCcccEEEEeCCCH---------------HHHHHHHHHHHhcCCceEEEEC--C
Confidence 125799999999555 56789999999 8999999665 4
Q ss_pred ChhHHHHHHHHHHH-hccceEEee
Q 004164 693 SQATKDMVISRMKM-VFNHLFCLQ 715 (771)
Q Consensus 693 ~~~~~~~v~~~l~~-vF~~v~~~~ 715 (771)
.-+.....+..|++ -|.++-.++
T Consensus 148 ~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 148 CIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCeeeEEEE
Confidence 44444556777776 466554443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.2e-06 Score=92.94 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=98.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||++|+|.|+.+.++....+ ..+|+++|+++.+++.+++.+ |+ .+++++.+|+.++.....
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~-------- 320 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLLELKP-------- 320 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcccccc--------
Confidence 446899999999999988888764 358999999999999998876 54 358999999987632110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-CcC-c------------ccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AAD-F------------VEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p-p~~-f------------~~~~fl~~~~~~L~~~ 682 (771)
.....||.|++|+-.+. .|+..- |.. + +..++|..+.+.|+||
T Consensus 321 ---------------------~~~~~fD~Vl~DaPCSg--~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 321 ---------------------QWRGYFDRILLDAPCSG--LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred ---------------------cccccCCEEEEeCCCCc--ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 01256999999985432 122111 111 1 1468899999999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhccc
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFNH 710 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 710 (771)
|.||+...+-.++..+.++..+.+-++.
T Consensus 378 G~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 378 GTLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred CEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 9999988777777777777766665554
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=6e-06 Score=87.21 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=67.6
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
..+...+.+.+.. .++.+|||+|||+|.++..|++.+. .++++|+++.+++.++++... .++++++.+|+.++++
T Consensus 15 ~~i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 15 ESVIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCCh
Confidence 3445555555543 5678999999999999999999875 799999999999988766532 5689999999999876
Q ss_pred CCCCcc---EEEecccc
Q 004164 131 MDETFD---VILDKGGL 144 (771)
Q Consensus 131 ~~~sFD---lVi~~~~l 144 (771)
+ +|| +|+++-..
T Consensus 90 ~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 90 P--DFPKQLKVVSNLPY 104 (253)
T ss_pred h--HcCCcceEEEcCCh
Confidence 5 466 77765443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-06 Score=85.97 Aligned_cols=137 Identities=16% Similarity=0.243 Sum_probs=85.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCee----EEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK----VHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~----v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
-.+..+|+||+-.|.|+..++..|....|.+||||+..++.|+++..+..+.... ..++++..|..=.. ...++.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~-~~~a~~ 135 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ-RNEADR 135 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-cccccc
Confidence 3567899999999999999999998889999999999999999998765433222 23444444422111 111111
Q ss_pred ccccc-ccccccCCCCCCCCCC---CCCCCceeEEEE-------eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcE
Q 004164 616 MSVVH-GNEITSNNTRSCNGNC---TASNARVDILII-------DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL 684 (771)
Q Consensus 616 ~~~~~-~~~~~~~~~~~~~~~~---~~~~~~yDvIi~-------D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gi 684 (771)
..... +.+.....+...+... .....+||+|++ -++-+| .|| ..||+.+.++|.|||+
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD--~GL---------~~ff~kis~ll~pgGi 204 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGD--DGL---------RRFFRKISSLLHPGGI 204 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccccc--HHH---------HHHHHHHHHhhCcCcE
Confidence 00000 0000000000111100 234578999984 334444 356 8999999999999999
Q ss_pred EEEE
Q 004164 685 FIVN 688 (771)
Q Consensus 685 lv~N 688 (771)
||+-
T Consensus 205 LvvE 208 (288)
T KOG2899|consen 205 LVVE 208 (288)
T ss_pred EEEc
Confidence 9974
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.7e-06 Score=88.55 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=94.1
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 623 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 623 (771)
+||+||+|+|+++..|....|+.+|+++||+|..+++|++......-.++.++.+ ++.....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~---dlf~~~~--------------- 174 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQS---DLFEPLR--------------- 174 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEee---ecccccC---------------
Confidence 7999999999999999999999999999999999999998862211034444444 4444433
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCC--CC--------------CCCCcCCcC-cccHHHHHHHHHccCCCcEEE
Q 004164 624 ITSNNTRSCNGNCTASNARVDILIIDVDSPD--SS--------------SGMTCPAAD-FVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d--~~--------------~g~s~pp~~-f~~~~fl~~~~~~L~~~Gilv 686 (771)
++||+|+..- +- .. ..+-.-+.. -+-..|+..+.+.|+|+|+++
T Consensus 175 -----------------~~fDlIVsNP--PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~ 235 (280)
T COG2890 175 -----------------GKFDLIVSNP--PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLI 235 (280)
T ss_pred -----------------CceeEEEeCC--CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEE
Confidence 3799999722 10 00 000000000 134678889999999999999
Q ss_pred EEeccCChhHHHHHHHHHHHhc--cceEEeeecCCccEEEEEecC
Q 004164 687 VNLVSRSQATKDMVISRMKMVF--NHLFCLQLEEDVNLVLFGLSS 729 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~vF--~~v~~~~~~~~~N~Vl~a~~~ 729 (771)
+-.-....+ .+.+.+.+.. ..+...+-..+.+.|+.+...
T Consensus 236 le~g~~q~~---~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 236 LEIGLTQGE---AVKALFEDTGFFEIVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred EEECCCcHH---HHHHHHHhcCCceEEEEEecCCCceEEEEEEec
Confidence 876433333 3444444444 344555544556667766543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.9e-06 Score=89.63 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc----C-CCeEEEEcCCHHHHHHHHHHhh-cCCCCcEE--EEeecCCC----CC--CC
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNV-RDRSDMRW--RVMDMTSM----QF--MD 132 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~----g-~~~V~~vDiS~~~i~~~~~~~~-~~~~~i~~--~~~D~~~l----~~--~~ 132 (771)
.++..|+|+|||+|.-+..|.+. + ...++++|+|..+++.+.++.. ...+.+.+ +++|..+. +- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 35668999999999988776654 2 2479999999999999988887 56677666 78888663 21 12
Q ss_pred CCccEEEecc-ccccccCcccchHHHHHHHHHHHH-ccccCeEEEEEE
Q 004164 133 ETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKR-LLKSGGKFVCLT 178 (771)
Q Consensus 133 ~sFDlVi~~~-~l~~l~~~~~~~~~~~~~l~~i~r-vLkpGG~~ii~~ 178 (771)
....+|+.-| ++.++...+ ...+|+++++ .|+|||.|++.-
T Consensus 155 ~~~r~~~flGSsiGNf~~~e-----a~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPE-----AAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHH-----HHHHHHHHHHhhCCCCCEEEEec
Confidence 3456777655 888877655 7799999999 999999887743
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-06 Score=83.80 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=86.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCc-EEEEeecCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDM-RWRVMDMTS 127 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i-~~~~~D~~~ 127 (771)
..+...|.+++.. .+.+|||||||||..+.+++.. +.-...-.|..+..+..........+ +++ .-+..|+..
T Consensus 12 ~pIl~vL~~~l~~----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 12 DPILEVLKQYLPD----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred hHHHHHHHHHhCc----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence 3566678888753 3336999999999999999987 33366678998887654444332222 332 345677776
Q ss_pred CCCC--------CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 128 MQFM--------DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 128 l~~~--------~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.+.+ .++||.|++..++|.++... .+.+|+...++|++||.|++--
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~-----~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINMLHISPWSA-----VEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CCCccccccccCCCCcceeeehhHHHhcCHHH-----HHHHHHHHHHhCCCCCEEEEeC
Confidence 5322 45899999999999876544 7899999999999999988753
|
The function of this family is unknown. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-06 Score=86.16 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-----CCCCCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-----FMDETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-----~~~~sFDl 137 (771)
...+||||||++|..+.+|++. + .++|+.+|+++...+.+++.+...+ .+++++.+|+.+. + .+.++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4579999999999999999986 3 3699999999999998877665544 5799999999763 1 12358999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
|+.-+.= .....++..+.++|+|||.+++-.
T Consensus 125 VFiDa~K----------~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDADK----------RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEESTG----------GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcccc----------cchhhHHHHHhhhccCCeEEEEcc
Confidence 9953311 126789999999999999988754
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=80.19 Aligned_cols=141 Identities=14% Similarity=0.195 Sum_probs=95.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
+.-.++|.+|+|.|.|+..|..+. .+++++|+++..++.||+..+ .-++++++++|--++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~--------------- 102 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFW--------------- 102 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT-----------------
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCC---------------
Confidence 344689999999999999998885 489999999999999999985 3478999999876652
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc-----HHHHHHHHHccCCCcEEEEEeccC--
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-----GSFLLTVKDALSEQGLFIVNLVSR-- 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~-----~~fl~~~~~~L~~~Gilv~Nl~~~-- 692 (771)
+..+||+|++ +. -..|++ ..++..+...|+|||.||+--+..
T Consensus 103 -------------------P~~~FDLIV~----SE--------VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~ 151 (201)
T PF05401_consen 103 -------------------PEGRFDLIVL----SE--------VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN 151 (201)
T ss_dssp --------------------SS-EEEEEE----ES---------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred -------------------CCCCeeEEEE----eh--------HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc
Confidence 1368999998 22 123343 247889999999999999854311
Q ss_pred -----ChhHHHHHHHHHHHhccceEEeeecC---CccEEEEEecCC
Q 004164 693 -----SQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLFGLSSE 730 (771)
Q Consensus 693 -----~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~Vl~a~~~~ 730 (771)
+..-.+.++..|++.|..|-.+.+.. +.+-++..+.++
T Consensus 152 c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 152 CRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLARFRNP 197 (201)
T ss_dssp HHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEEEE--
T ss_pred ccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEeeeecCC
Confidence 12234788899999999877776532 334455555443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.2e-06 Score=83.52 Aligned_cols=109 Identities=13% Similarity=0.257 Sum_probs=87.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
+++++|+||.=+|.-+......+| .-+|+++|+|+.-.+++.+.-.+. -+..+++++++|.+-|.++-.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~--------- 143 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA--------- 143 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh---------
Confidence 578999999999966555555555 469999999999999997765322 367899999999999998763
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+...||.+|+|.|.... ..+++.+-++|++||+++++-
T Consensus 144 ------------------~~~~~tfDfaFvDadK~nY-------------~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 144 ------------------DGESGTFDFAFVDADKDNY-------------SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred ------------------cCCCCceeEEEEccchHHH-------------HHHHHHHHhhcccccEEEEec
Confidence 1235789999999877632 389999999999999999853
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6e-06 Score=82.52 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=84.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+.+|..||||.|..+..|++.+|...|+++|-||+|++-|++.. +.+++..+|...|=.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p-------------- 89 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKP-------------- 89 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCC--------------
Confidence 4568999999999999999999999999999999999999998875 468999999999811
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....|+|+..+ . ...+ | -..+.|..+-..|.|||+|++.+...
T Consensus 90 --------------------~~~~dllfaNA--v--lqWl---p---dH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 90 --------------------EQPTDLLFANA--V--LQWL---P---DHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred --------------------CCccchhhhhh--h--hhhc---c---ccHHHHHHHHHhhCCCceEEEECCCc
Confidence 25688887632 1 1111 1 13678899999999999999998665
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.5e-06 Score=86.90 Aligned_cols=102 Identities=9% Similarity=0.033 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C----CCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F----MDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~----~~~sFD 136 (771)
.+..+|||||||+|..+.+++.. + .+.|+.+|.++...+.+++.+.+.+ ++++++.+|+.+. + + ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 35689999999999999999875 2 3579999999999998877765554 4799999998663 2 1 136899
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+|+.-+. ......+++.+.++|+|||.+++-.
T Consensus 197 ~VFIDa~----------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDAD----------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECCC----------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 9995321 1236799999999999999987753
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.2e-06 Score=96.39 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=81.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|.+...|...+|..++++||+++.|++.|++.... ...+++++.+|+.++-....
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-~g~~ie~I~gDa~dLp~~fe------------ 484 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-EGRSWNVIKGDAINLSSSFE------------ 484 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-cCCCeEEEEcchHhCccccC------------
Confidence 35789999999999988888888999999999999999999987532 23468889999887411111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeC-----CCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDV-----DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~-----~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
+..||+|+... .+--+..+...++. .-..+|+.+.+.|+|||.+++.-
T Consensus 485 -------------------deSFDvVVsn~vLH~L~syIp~~g~~f~~e--dl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 485 -------------------KESVDTIVYSSILHELFSYIEYEGKKFNHE--VIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred -------------------CCCEEEEEEchHHHhhhhhcccccccccHH--HHHHHHHHHHHHcCCCcEEEEEe
Confidence 35799998621 00000000000001 22688999999999999999863
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.9e-06 Score=83.74 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=97.2
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 623 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 623 (771)
-+|.||+|.|.....++...|+..+.+||+....+..|.+......-.++.++.+||..++...-.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~-------------- 85 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFP-------------- 85 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHST--------------
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhccc--------------
Confidence 689999999999999999999999999999999999887776222337899999999999988651
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHH
Q 004164 624 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISR 703 (771)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~ 703 (771)
+...|-|.+-- +||..--.-.-..+++++||+.+.++|+|||.+- +.+.+..+.+.+++.
T Consensus 86 ----------------~~~v~~i~i~F--PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~--~~TD~~~y~~~~~~~ 145 (195)
T PF02390_consen 86 ----------------PGSVDRIYINF--PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY--FATDVEEYAEWMLEQ 145 (195)
T ss_dssp ----------------TTSEEEEEEES-------SGGGGGGSTTSHHHHHHHHHHEEEEEEEE--EEES-HHHHHHHHHH
T ss_pred ----------------CCchheEEEeC--CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE--EEeCCHHHHHHHHHH
Confidence 36799998833 4443211112356899999999999999999876 556778887777777
Q ss_pred HHHh
Q 004164 704 MKMV 707 (771)
Q Consensus 704 l~~v 707 (771)
+.+.
T Consensus 146 ~~~~ 149 (195)
T PF02390_consen 146 FEES 149 (195)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7774
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.8e-06 Score=82.92 Aligned_cols=123 Identities=19% Similarity=0.319 Sum_probs=73.9
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (771)
.+.+.+++... ++...|-|+|||.+.++..+. .+. .|...|.-. .+-.+..+||.+.|.+++
T Consensus 60 vd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva--------------~n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 60 VDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA--------------PNPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S----EEEEESS---------------SSTTEEES-TTS-S--TT
T ss_pred HHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC--------------CCCCEEEecCccCcCCCC
Confidence 34577777651 345799999999999996653 344 799999855 122467899999999999
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh-hcchhhhh-ccCcEEEEee
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHA 202 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~-~~~l~~~~-~~~w~~~~~~ 202 (771)
+.|+++..-+|-. .. +..++.|..|+||+||.+.+.+...... .+.+.... ..|+.+....
T Consensus 122 svDv~VfcLSLMG---Tn-----~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 122 SVDVAVFCLSLMG---TN-----WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp -EEEEEEES---S---S------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred ceeEEEEEhhhhC---CC-----cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 9999997554433 22 7799999999999999999998653211 12233333 3366666544
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.6e-06 Score=89.09 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..+.+..+. ..|++||+++.+++.|++.+.-..-+++.++.+|+.+.+..
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~------------- 146 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE------------- 146 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-------------
Confidence 4568999999999999988887753 47999999999999999875211124689999998765332
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...||+|+++... .+....+.+.|+|||.+++.+
T Consensus 147 --------------------~~~fD~Ii~~~g~----------------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 --------------------FAPYDVIFVTVGV----------------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred --------------------cCCccEEEECCch----------------HHhHHHHHHhcCCCCEEEEEe
Confidence 1359999996321 112234567899999988765
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.1e-06 Score=93.16 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=73.6
Q ss_pred CCeEEEEcCCcchhHHHHHhcC-----CCeEEEEcCCHHHHHHHHHHhh--cCCCCcEEEEeecCCCCCCCCCccEEEec
Q 004164 69 PPQILVPGCGNSRLSEHLYDAG-----FHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g-----~~~V~~vDiS~~~i~~~~~~~~--~~~~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
+..|||+|||+|.++...++++ ..+|++|+-++.++..++++.. ....+++++.+||++...+ +++|+|++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 4689999999999998777664 4699999999988876655422 2347899999999999765 589999987
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
..- .+.+.+ +....|....|.|||||+++
T Consensus 266 lLG-sfg~nE----l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNE----LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTT----SHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-Cccccc----cCHHHHHHHHhhcCCCCEEe
Confidence 543 344433 25567889999999999987
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.2e-06 Score=89.27 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=76.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.+...+...++..++++||+++.+++.|++.+. .++++++.+|+.+. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~l----p------------ 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDL----P------------ 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhC----C------------
Confidence 3468999999999988888887777899999999999999999875 35688899998653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+..||+|+... . ..-+ | -....|+.+.+.|+|||.+++
T Consensus 174 -----------------~~~~sFDvVIs~~--~--L~~~--~----d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 174 -----------------FPTDYADRYVSAG--S--IEYW--P----DPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred -----------------CCCCceeEEEEcC--h--hhhC--C----CHHHHHHHHHHhcCCCcEEEE
Confidence 1135799998721 1 0000 1 125689999999999999876
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.2e-06 Score=87.47 Aligned_cols=106 Identities=14% Similarity=0.191 Sum_probs=75.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.....+.... +..+|++||+++.+++.|++.+.-..-++++++.+|..+. .
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l----~---------- 141 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL----P---------- 141 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC----C----------
Confidence 455799999999998776666554 4558999999999999999875211124788888986432 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+..||+|+....-. . .+. ...+++.+.+.|+|||.|++.
T Consensus 142 -------------------~~~~~fD~Vi~~~v~~-----~---~~d--~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 142 -------------------VADNSVDVIISNCVIN-----L---SPD--KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred -------------------CCCCceeEEEEcCccc-----C---CCC--HHHHHHHHHHHcCCCcEEEEE
Confidence 1135799999743110 0 111 267899999999999999874
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-05 Score=83.52 Aligned_cols=129 Identities=16% Similarity=0.235 Sum_probs=91.8
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|.|.|...|....|..+|+.||+|..-++.||+......-++..|+.+|..+=
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------------------ 220 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------------------ 220 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc------------------
Confidence 34999999999999999999999999999999999999999998432222225666654331
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHH
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 701 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 701 (771)
. ..+||+||. +.+-. .|.. ....+..+++..++++|++||-|-+-.- +... .-
T Consensus 221 ----------------v-~~kfd~Iis--NPPfh-~G~~--v~~~~~~~~i~~A~~~L~~gGeL~iVan-~~l~----y~ 273 (300)
T COG2813 221 ----------------V-EGKFDLIIS--NPPFH-AGKA--VVHSLAQEIIAAAARHLKPGGELWIVAN-RHLP----YE 273 (300)
T ss_pred ----------------c-cccccEEEe--CCCcc-CCcc--hhHHHHHHHHHHHHHhhccCCEEEEEEc-CCCC----hH
Confidence 1 137999998 22322 1221 1223445999999999999996654221 3333 35
Q ss_pred HHHHHhccceEEee
Q 004164 702 SRMKMVFNHLFCLQ 715 (771)
Q Consensus 702 ~~l~~vF~~v~~~~ 715 (771)
..|+++|.++..+.
T Consensus 274 ~~L~~~Fg~v~~la 287 (300)
T COG2813 274 KKLKELFGNVEVLA 287 (300)
T ss_pred HHHHHhcCCEEEEE
Confidence 67889999887765
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=80.87 Aligned_cols=118 Identities=22% Similarity=0.282 Sum_probs=83.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC--CC--------eEEEEcCCHHHHHHHHHHhhcCC--CCc
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FH--------GITNVDFSKVVISDMLRRNVRDR--SDM 118 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g--~~--------~V~~vDiS~~~i~~~~~~~~~~~--~~i 118 (771)
+.+...|..+... .++..+||.-||+|.+..+.+..+ .. +++|+|+++.+++.+++.+...+ ..+
T Consensus 14 ~~lA~~ll~la~~---~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 14 PTLAAALLNLAGW---RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHHHhCC---CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 4555566666554 578899999999999997776552 22 38899999999998877665444 358
Q ss_pred EEEEeecCCCCCCCCCccEEEeccccccccCcc-cchHHHHHHHHHHHHccccC
Q 004164 119 RWRVMDMTSMQFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRLLKSG 171 (771)
Q Consensus 119 ~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~-~~~~~~~~~l~~i~rvLkpG 171 (771)
.+.+.|+.++++.++++|+|+++-....-.... ........+++++.++|++.
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence 899999999998788999999887666543322 22456889999999999993
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-05 Score=70.05 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=77.2
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 623 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 623 (771)
+++++|.|.|.+...+.. .+..++.++|+++..++.+++........+++++.+|..++... .
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------- 63 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-A--------------- 63 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-c---------------
Confidence 489999999998887777 56679999999999999998433222356799999998887541 1
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 624 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||+|+.+..-... .-....+++.+.+.|+++|.+++-
T Consensus 64 ----------------~~~~d~i~~~~~~~~~---------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 ----------------DESFDVIISDPPLHHL---------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ----------------CCceEEEEEccceeeh---------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2569999995422110 124488899999999999999864
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=85.20 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=75.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..|... ..+++++|++|.+++.|++.+. ...++++|+... .
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~----~------------ 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL----P------------ 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC----c------------
Confidence 4578999999999998888765 3689999999999999998753 246777887542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+.+||+|+....- ..+ + . -..+|..+.+.|+|||.|++.....
T Consensus 99 -----------------~~~~~fD~V~s~~~l----~~~--~--d--~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 99 -----------------LATATFDLAWSNLAV----QWC--G--N--LSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred -----------------CCCCcEEEEEECchh----hhc--C--C--HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 113579999873210 000 1 1 2688999999999999999887654
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.5e-06 Score=83.03 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=70.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||++|+|.|.++.+|... ..+|++||++|.+++.|++...- .+-.+++.+.|...+ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~--~~------------- 91 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAR-ENLPLRTDAYDINAA--AL------------- 91 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHH-hCCCceeEeccchhc--cc-------------
Confidence 3578999999999999999885 35899999999999999876631 111256666665332 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||+|+.-. . ..-+ ++. ....+++.+++.|+|||.+++.
T Consensus 92 -------------------~~~fD~I~~~~--~--~~~~--~~~--~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 -------------------NEDYDFIFSTV--V--FMFL--QAG--RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -------------------cCCCCEEEEec--c--cccC--CHH--HHHHHHHHHHHHhCCCcEEEEE
Confidence 14699998621 0 0000 111 1257899999999999985543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.6e-06 Score=88.83 Aligned_cols=162 Identities=15% Similarity=0.249 Sum_probs=98.0
Q ss_pred CceeecCC-ccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHh
Q 004164 505 NQLKVYHG-YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (771)
Q Consensus 505 ~~~~vd~~-~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~ 583 (771)
..+.+||+ -...-+|..--..+-++..+. ....+||++|+|+|.|+....... ..+|.+||+||..++.|++
T Consensus 130 ~~I~idPg~AFGTG~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~ 202 (295)
T PF06325_consen 130 IVIEIDPGMAFGTGHHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARE 202 (295)
T ss_dssp EEEEESTTSSS-SSHCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHH
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHH
Confidence 45778886 445555532222222222211 344699999999999999888875 3489999999999999999
Q ss_pred hcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC
Q 004164 584 YFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 662 (771)
Q Consensus 584 ~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p 662 (771)
...+. -.+++.++. . .+ ....+||+|+..+...
T Consensus 203 N~~~N~~~~~~~v~~--~----~~-------------------------------~~~~~~dlvvANI~~~--------- 236 (295)
T PF06325_consen 203 NAELNGVEDRIEVSL--S----ED-------------------------------LVEGKFDLVVANILAD--------- 236 (295)
T ss_dssp HHHHTT-TTCEEESC--T----SC-------------------------------TCCS-EEEEEEES-HH---------
T ss_pred HHHHcCCCeeEEEEE--e----cc-------------------------------cccccCCEEEECCCHH---------
Confidence 98332 123565531 0 01 1126899999866443
Q ss_pred CcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEec
Q 004164 663 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 728 (771)
Q Consensus 663 p~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 728 (771)
.-......+.++|+|||.|++.=+-. +..+.+.+.+++-|. ........+++.+..+
T Consensus 237 ----vL~~l~~~~~~~l~~~G~lIlSGIl~--~~~~~v~~a~~~g~~---~~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 237 ----VLLELAPDIASLLKPGGYLILSGILE--EQEDEVIEAYKQGFE---LVEEREEGEWVALVFK 293 (295)
T ss_dssp ----HHHHHHHHCHHHEEEEEEEEEEEEEG--GGHHHHHHHHHTTEE---EEEEEEETTEEEEEEE
T ss_pred ----HHHHHHHHHHHhhCCCCEEEEccccH--HHHHHHHHHHHCCCE---EEEEEEECCEEEEEEE
Confidence 11456677788899999999864333 334567777765333 2222334456655543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=83.54 Aligned_cols=127 Identities=14% Similarity=0.152 Sum_probs=81.9
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|.|.++..+... +..+|++||+|+.+++.|++.+... ..++.++.+|..+++.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~~~~~~d~~~~~~---------------- 98 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA-GVDVDVRRGDWARAVE---------------- 98 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh-CCeeEEEECchhhhcc----------------
Confidence 468999999999998888775 3358999999999999999876321 1257888898766421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCC-CCCCCCCCCc--CCcCc--------ccHHHHHHHHHccCCCcEEEEEec
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDSSSGMTC--PAADF--------VEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~-s~d~~~g~s~--pp~~f--------~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
...||+|+.+.- ......+... |...+ .-..+++.+.+.|++||.+++-..
T Consensus 99 ------------------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 99 ------------------FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ------------------CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 256999999641 1110000000 00000 125688899999999999996432
Q ss_pred cCChhHHHHHHHHHHH
Q 004164 691 SRSQATKDMVISRMKM 706 (771)
Q Consensus 691 ~~~~~~~~~v~~~l~~ 706 (771)
... ....++..+++
T Consensus 161 ~~~--~~~~~~~~l~~ 174 (223)
T PRK14967 161 ELS--GVERTLTRLSE 174 (223)
T ss_pred ccc--CHHHHHHHHHH
Confidence 221 12344555543
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=82.49 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=86.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEE-eecC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRV-MDMT 126 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~-~D~~ 126 (771)
..-..|..++.. ....+|||||.+.|..+.+|+.. + .+++|.+|+++.+.+.|++...+.+ +++..+. +|..
T Consensus 46 e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 333444444443 46789999999999999999987 3 4689999999999999988776655 4577777 4665
Q ss_pred CC-C-CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 127 SM-Q-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 127 ~l-~-~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+. . ...++||+|+. ++- +.....++..+.++|+|||.+++-...
T Consensus 123 ~~l~~~~~~~fDliFI----Dad------K~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 123 DVLSRLLDGSFDLVFI----DAD------KADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred HHHHhccCCCccEEEE----eCC------hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 53 2 34689999994 321 122569999999999999998886543
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=82.21 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=78.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++..+...+ |..+++++|+++.+++.|++.... ...+++++.+|...+- .
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~--~----------- 83 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLP--F----------- 83 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCC--C-----------
Confidence 445789999999999988888877 677999999999999999988321 2457888888875421 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....||+|+....-.. + . -...+++.+.+.|+|||.+++-.
T Consensus 84 --------------------~~~~~D~v~~~~~~~~----~----~--~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 --------------------PDGSFDAVRSDRVLQH----L----E--DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred --------------------CCCCceEEEEechhhc----c----C--CHHHHHHHHHHHhcCCcEEEEEe
Confidence 1357999998431110 1 0 12678999999999999988643
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-05 Score=78.43 Aligned_cols=128 Identities=14% Similarity=0.197 Sum_probs=81.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
+..+||++|+|.|.++..+... ..+|+++|+++.+++.|++.+... .+.++.++.+|..+.+ .
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~---------- 87 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---R---------- 87 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---c----------
Confidence 3468999999999999888887 469999999999999998877321 1222888888865421 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC----------CCCCcCC-cCcccHHHHHHHHHccCCCcEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS----------SGMTCPA-ADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~----------~g~s~pp-~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+||+|+.+.--.... ....+.. ....-..+++.+.+.|+|+|.+++
T Consensus 88 ---------------------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 88 ---------------------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred ---------------------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 13699999843100000 0000000 011236789999999999999988
Q ss_pred EeccCChhHHHHHHHHHHH
Q 004164 688 NLVSRSQATKDMVISRMKM 706 (771)
Q Consensus 688 Nl~~~~~~~~~~v~~~l~~ 706 (771)
.+.+... .+.+.+.+.+
T Consensus 147 ~~~~~~~--~~~l~~~~~~ 163 (188)
T PRK14968 147 LQSSLTG--EDEVLEYLEK 163 (188)
T ss_pred EEcccCC--HHHHHHHHHH
Confidence 7644321 2334444544
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=84.79 Aligned_cols=164 Identities=13% Similarity=0.144 Sum_probs=102.9
Q ss_pred CceeecCC-ccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHh
Q 004164 505 NQLKVYHG-YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (771)
Q Consensus 505 ~~~~vd~~-~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~ 583 (771)
..+++||+ -...-||-.-...+-++ +... .++.+||++|+|+|.|+....... ..++.++||||.-+++|++
T Consensus 131 ~~i~lDPGlAFGTG~HpTT~lcL~~L----e~~~--~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 131 LNIELDPGLAFGTGTHPTTSLCLEAL----EKLL--KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARE 203 (300)
T ss_pred eEEEEccccccCCCCChhHHHHHHHH----HHhh--cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHH
Confidence 56788987 44555664333222222 2221 367899999999999988877775 3489999999999999999
Q ss_pred hcCCCCCC-CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC
Q 004164 584 YFGFTQDK-SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 662 (771)
Q Consensus 584 ~Fg~~~~~-r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p 662 (771)
...+..-+ ..++-..+..+. ....+||+|+..+-..
T Consensus 204 Na~~N~v~~~~~~~~~~~~~~----------------------------------~~~~~~DvIVANILA~--------- 240 (300)
T COG2264 204 NARLNGVELLVQAKGFLLLEV----------------------------------PENGPFDVIVANILAE--------- 240 (300)
T ss_pred HHHHcCCchhhhcccccchhh----------------------------------cccCcccEEEehhhHH---------
Confidence 88441111 111111111111 1235899999866332
Q ss_pred CcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHHH-HHhccceEEeeecCCccEEEEEe
Q 004164 663 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRM-KMVFNHLFCLQLEEDVNLVLFGL 727 (771)
Q Consensus 663 p~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l-~~vF~~v~~~~~~~~~N~Vl~a~ 727 (771)
.-..+...++.+|+|||.+++.=+-. ...++|.+.+ ++-|..+-... ...++.+..
T Consensus 241 ----vl~~La~~~~~~lkpgg~lIlSGIl~--~q~~~V~~a~~~~gf~v~~~~~---~~eW~~i~~ 297 (300)
T COG2264 241 ----VLVELAPDIKRLLKPGGRLILSGILE--DQAESVAEAYEQAGFEVVEVLE---REEWVAIVG 297 (300)
T ss_pred ----HHHHHHHHHHHHcCCCceEEEEeehH--hHHHHHHHHHHhCCCeEeEEEe---cCCEEEEEE
Confidence 11578889999999999999764433 3356777777 44676554443 234555443
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.9e-06 Score=87.97 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=68.9
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~ 129 (771)
.+...+.+.+.. .++.+|||||||+|.++..+++.+. +|+++|+++.+++.+++++... .++++++.+|+.+.+
T Consensus 23 ~i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 344445555543 5788999999999999999998865 8999999999999888776543 367999999998876
Q ss_pred CCCCCccEEEeccccc
Q 004164 130 FMDETFDVILDKGGLD 145 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~ 145 (771)
+ ..||+|+++-..+
T Consensus 99 ~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 99 F--PYFDVCVANVPYQ 112 (294)
T ss_pred c--cccCEEEecCCcc
Confidence 5 3689998764444
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-05 Score=80.93 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=84.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (771)
++.+.+.+.+....-..+..|||+|||+|..+..++.. +...++++|.|+.+|..+.+.+.... ..+..+..+|+..
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccc
Confidence 33344444443311124568999999999999988776 55689999999999987765543322 4566665555542
Q ss_pred -----CCCCCCccEEEeccccc-------------------cccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 129 -----QFMDETFDVILDKGGLD-------------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 129 -----~~~~~sFDlVi~~~~l~-------------------~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+..++.+|+++++-..- ++....++...+..++.-+.|.|+|||.+.+...
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 34568899999763221 1111112223477888999999999999887664
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-05 Score=82.74 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCCC-----CCCCccEEEe
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQF-----MDETFDVILD 140 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~~-----~~~sFDlVi~ 140 (771)
.++.++||+|||+|.++..+++.|..+|+++|+++.++....+. .+++ .+...|+..+.. +-..+|+++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~----~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ----DERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc----CCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 35779999999999999999999888999999999888642222 2332 234445443321 1124555553
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
. +..++..+.+.|++ |.+++.
T Consensus 150 S---------------~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 150 S---------------LISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred e---------------hHhHHHHHHHHhCc-CeEEEE
Confidence 2 22568889999999 765544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.8e-05 Score=79.68 Aligned_cols=107 Identities=13% Similarity=0.132 Sum_probs=82.8
Q ss_pred ccCCCCcEEEEeccccHHHHHHHHhCCC------CcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhc
Q 004164 538 SVGKSVKAVVIGLGAGLLPMFLHECMPF------VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 538 ~~~~~~~vLviGlG~G~l~~~L~~~~p~------~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
.++...++|++++|+|-++--+.++.+. .+|+++||+|.|+.++++.- ++..+.++.++.+||.+. +
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L----p 172 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL----P 172 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC----C
Confidence 4566689999999999877766666665 69999999999999999988 888888999999999874 1
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+..||+..+- +.- .. |+ --+..|+.+.+.|+|||.|..
T Consensus 173 -----------------------------Fdd~s~D~yTia-fGI---RN--~t----h~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 173 -----------------------------FDDDSFDAYTIA-FGI---RN--VT----HIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred -----------------------------CCCCcceeEEEe-cce---ec--CC----CHHHHHHHHHHhcCCCcEEEE
Confidence 124678887761 111 11 11 116789999999999999884
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=89.70 Aligned_cols=119 Identities=9% Similarity=0.095 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC-CCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF-MDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~-~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++.+...+ .+++|.++|+.+... ..++||+|+..-.-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999999876 489999999999998876654433 479999999976421 124699998653311
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 200 (771)
.+ ...+++.+. .++|++.++++.. ...+...+... .+|.+..
T Consensus 312 G~---------~~~~l~~l~-~~~p~~ivyvsc~-p~TlaRDl~~L--~gy~l~~ 353 (374)
T TIGR02085 312 GI---------GKELCDYLS-QMAPKFILYSSCN-AQTMAKDIAEL--SGYQIER 353 (374)
T ss_pred CC---------cHHHHHHHH-hcCCCeEEEEEeC-HHHHHHHHHHh--cCceEEE
Confidence 11 234455554 4788877776653 23333333322 4666653
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-06 Score=89.02 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=73.0
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 622 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 622 (771)
.+||++|+|||.|..-|.... ..|++||+.+.++++|++|-.. ++-..--+.=-++|+....
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~--dP~~~~~~~y~l~~~~~~~-------------- 152 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKM--DPVLEGAIAYRLEYEDTDV-------------- 152 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhc--Cchhccccceeeehhhcch--------------
Confidence 679999999999999888875 6899999999999999999533 2211110000122332221
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 623 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
+....+||+|++ .+.-.-+.- -.+|++.+.++|+|+|.+.+-.+.|.
T Consensus 153 --------------E~~~~~fDaVvc----sevleHV~d------p~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 153 --------------EGLTGKFDAVVC----SEVLEHVKD------PQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred --------------hhcccccceeee----HHHHHHHhC------HHHHHHHHHHHhCCCCceEeeehhhh
Confidence 112356999987 211000000 17899999999999999998766553
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=82.72 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=80.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
...+||+||+|.|.++..+...+| ..+++++|+++.+++.|++.+.-. ..++++++.+|..+.. .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~----------- 117 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F----------- 117 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----------
Confidence 347899999999999999988887 679999999999999999998431 2457889888876531 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....||+|++...-. .+ + -...+|+.+.+.|+|||.+++.-
T Consensus 118 --------------------~~~~~D~I~~~~~l~----~~----~--~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 118 --------------------PDNSFDAVTIAFGLR----NV----P--DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred --------------------CCCCccEEEEecccc----cC----C--CHHHHHHHHHHhccCCcEEEEEE
Confidence 125799998732111 01 1 13688999999999999887643
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.4e-06 Score=86.17 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
-.+..|||+|||+|.++...+.+|.++|++++.|+ |.+.+++..+... .+++++.+-+++..+| ++.|+||+.-.-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 35778999999999999999999999999999887 4455655443333 6799999999998877 679999987655
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
+.+.+. ..++.++- .++.|+|.|.++
T Consensus 254 ~mL~NE----RMLEsYl~-Ark~l~P~GkMf 279 (517)
T KOG1500|consen 254 YMLVNE----RMLESYLH-ARKWLKPNGKMF 279 (517)
T ss_pred hhhhhH----HHHHHHHH-HHhhcCCCCccc
Confidence 554432 12444443 459999999865
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.6e-05 Score=80.23 Aligned_cols=105 Identities=10% Similarity=-0.077 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-CC-CCccEEEec
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-MD-ETFDVILDK 141 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-~~-~sFDlVi~~ 141 (771)
.+.++||++||+|.++.+++.+|...|+++|.++.+++.+++.....+ .+++++++|+.+. . + .. ..||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 468999999999999999999988899999999999987765544333 3688999999553 2 2 12 247888864
Q ss_pred cccccccCcccchHHHHHHHHHHH--HccccCeEEEEEEcC
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLA 180 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~--rvLkpGG~~ii~~~~ 180 (771)
-.... .....++..+. .+|+++|.+++....
T Consensus 129 PPy~~--------~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFN--------GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCC--------CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 43321 11334454443 468888887776543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.7e-05 Score=82.13 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=78.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|.|.++..+....+..+|++||++|.+++.|++.+ ++++++.+|.+++..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---------------- 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---------------- 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----------------
Confidence 46899999999999888877766679999999999999999864 368999999988742
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCC---CCCCCcC------CcCcc-cHHHHHHHHHccCCCcEEEEEec
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDV-DSPDS---SSGMTCP------AADFV-EGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~-~s~d~---~~g~s~p------p~~f~-~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
..+||+||.+. +.... ...+ .. .-..+ -..|+..+...|.|+|.+.+-..
T Consensus 124 ------------------~~kFDlIIsNPPF~~l~~~d~~~~-~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 124 ------------------NEKFDVVISNPPFGKINTTDTKDV-FEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred ------------------cCCCcEEEEcCCccccCchhhhhh-hhhccCccccccccHHHHHhhhHheecCCceEEEEEe
Confidence 14699999844 11100 0000 00 00112 26899999999999997776543
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.4e-05 Score=86.72 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=76.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....++|+||+|.|.++..+.+.+|..+++++|+ |.+++.|++...- ...+|++++.+|..+. ..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~~----------- 213 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY----------- 213 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--CC-----------
Confidence 4457999999999999999999999999999998 7899999887521 1256899999997642 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+|+|++-- . +...+. -....+|+++.+.|+|||.+++-
T Consensus 214 ----------------------~~~D~v~~~~--~-----lh~~~~-~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 ----------------------PEADAVLFCR--I-----LYSANE-QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred ----------------------CCCCEEEeEh--h-----hhcCCh-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 2369887611 0 000000 01146899999999999999765
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.6e-06 Score=78.07 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=80.6
Q ss_pred ccccccchhHHHHHHHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEE
Q 004164 43 SFEWYAEWPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWR 121 (771)
Q Consensus 43 ~~ew~~~~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~ 121 (771)
-.|.|...+.+..-+...++. ...-.+.+++|+|||.|.++....-.+...|+|+|+.+.+++.+.+.+.+---++.+.
T Consensus 22 ~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlL 101 (185)
T KOG3420|consen 22 LLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLL 101 (185)
T ss_pred hhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhhee
Confidence 345677778887777666654 1224688999999999999966655566789999999999997755544444578999
Q ss_pred EeecCCCCCCCCCccEEEecccccc
Q 004164 122 VMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 122 ~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
++|+.++.+..+.||.++.+-.+..
T Consensus 102 qcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 102 QCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred eeeccchhccCCeEeeEEecCCCCc
Confidence 9999999888899999998776654
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.2e-05 Score=87.87 Aligned_cols=105 Identities=18% Similarity=0.284 Sum_probs=77.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++.++...+ ..+|++||+++.+++.|++... +..+++..+|..+. .
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~---~l~v~~~~~D~~~l----~----------- 226 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA---GLPVEIRLQDYRDL----N----------- 226 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc---cCeEEEEECchhhc----C-----------
Confidence 345689999999999999998876 4599999999999999998763 22478888886442 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..||+|+.- ++......-.-..+++.+.+.|+|||.+++..+..
T Consensus 227 ---------------------~~fD~Ivs~--------~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 227 ---------------------GQFDRIVSV--------GMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred ---------------------CCCCEEEEe--------CchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 469999751 11000000112578999999999999999876544
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=86.00 Aligned_cols=94 Identities=13% Similarity=0.224 Sum_probs=71.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC---CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF---VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~---~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.++..|...++. ..+++||+++.+++.|++.+ +++.++++|+.+. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~l----p--------- 146 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRL----P--------- 146 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccC----C---------
Confidence 3467999999999999888887764 37999999999999998875 3578888886542 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+..||+|+.- ++ +.+++.+++.|+|||.|++-.
T Consensus 147 --------------------~~~~sfD~I~~~-~~----------------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 147 --------------------FADQSLDAIIRI-YA----------------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred --------------------CcCCceeEEEEe-cC----------------CCCHHHHHhhccCCCEEEEEe
Confidence 113679999851 11 123577889999999999754
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=86.25 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
...+||.||+|.|..+.++.+. +..+|+.+|+++.+++.+++.+.. ..++++++..|.... ....++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999998886 457899999999999988765532 247899999999875 334578999996
Q ss_pred ccccccccCcccchHH-HHHHHH-HHHHccccCeEEEEEE
Q 004164 141 KGGLDALMEPELGHKL-GNQYLS-EVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~-~~~~l~-~i~rvLkpGG~~ii~~ 178 (771)
... +-..... ...+ -..+++ .+++.|+|||++++..
T Consensus 183 D~~-dp~~~~~-~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGP-CYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCc-chhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 521 1110000 0001 236677 8999999999987653
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.3e-05 Score=77.45 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=51.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...++|+||+|.|.++..+... ..++++||+|+.+++.+++.+.- .++++++.+|+.++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~ 71 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKF 71 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcC
Confidence 4468999999999999999887 35899999999999999999853 46899999999886
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.1e-05 Score=85.44 Aligned_cols=134 Identities=13% Similarity=0.189 Sum_probs=103.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||+++.|.|+-+..|...+.+ ..|+++|+++.-++..++.+ |+ .++.+...|+..+-....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~~------- 181 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAALP------- 181 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhch-------
Confidence 34568999999999998889888754 48999999999998887665 65 458889999987643322
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 681 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~ 681 (771)
..||.|++|+-.+. .||..-.+.. +..+.|..+.+.|+|
T Consensus 182 -------------------------~~fD~ILvDaPCSG--~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp 234 (470)
T PRK11933 182 -------------------------ETFDAILLDAPCSG--EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP 234 (470)
T ss_pred -------------------------hhcCeEEEcCCCCC--CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46999999995552 2333222221 247889999999999
Q ss_pred CcEEEEEeccCChhHHHHHHHHHHHhccc
Q 004164 682 QGLFIVNLVSRSQATKDMVISRMKMVFNH 710 (771)
Q Consensus 682 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 710 (771)
||++|....+-+++..+.++..+.+-++.
T Consensus 235 GG~LVYSTCT~~~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 235 GGTLVYSTCTLNREENQAVCLWLKETYPD 263 (470)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCC
Confidence 99999999888888888889887766654
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.5e-06 Score=87.02 Aligned_cols=46 Identities=35% Similarity=0.473 Sum_probs=38.9
Q ss_pred CCCCcEEEEecccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhhc
Q 004164 540 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDYF 585 (771)
Q Consensus 540 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiD~~v~~vA~~~F 585 (771)
+.+.+|+++|+|+| ++++.|.+.++ ..+|+++|||+.+++.|++-.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 45679999999999 57888888765 468999999999999999853
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-05 Score=80.81 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=49.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 602 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~ 602 (771)
+.+.+||+||+|+|.+...|...+|..++++||+++.+++.|++.+ ++++++.+|+.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 3456899999999999999999888889999999999999999875 246788888654
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-05 Score=82.98 Aligned_cols=133 Identities=16% Similarity=0.082 Sum_probs=93.2
Q ss_pred CCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CC
Q 004164 41 GDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SD 117 (771)
Q Consensus 41 ~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~ 117 (771)
+....+|-+....+..+.++. .+.+|||+=|=||.++...+..|..+|++||.|..+++.+++.+.-.+ .+
T Consensus 102 gqktGlFlDqR~nR~~v~~~~------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~ 175 (286)
T PF10672_consen 102 GQKTGLFLDQRENRKWVRKYA------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDR 175 (286)
T ss_dssp SSSTSS-GGGHHHHHHHHHHC------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTC
T ss_pred CCcceEcHHHHhhHHHHHHHc------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 344567877777777777774 468999999999999999888888899999999999998877665444 46
Q ss_pred cEEEEeecCCC-C--CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 118 MRWRVMDMTSM-Q--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 118 i~~~~~D~~~l-~--~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++|+++|+.+. . -..++||+|+.--.-.. .....-.....+++..+.++|+|||.+++++.+
T Consensus 176 ~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~-k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 176 HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA-KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EEEEES-HHHHHHHHHHTT-EEEEEE--SSEE-SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred eEEEecCHHHHHHHHhcCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 89999999763 1 12468999995332221 111111223778899999999999999888766
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=82.19 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=72.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeeEEEcchHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~------------~~~r~~v~i~Dg~~~l~~~~ 608 (771)
...+||++|+|.|.-+.+|+.+. .+|++||++|..++.|.+.-++. ...+++++++|..++-...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD- 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence 34699999999999999998863 58999999999999875544442 2356888899887762110
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
...||.|+- ... +.+-|+. .-..+++.+.++|+|||.+++
T Consensus 111 -------------------------------~~~fD~i~D-~~~------~~~l~~~-~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 111 -------------------------------LGPVDAVYD-RAA------LIALPEE-MRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -------------------------------CCCcCEEEe-chh------hccCCHH-HHHHHHHHHHHHcCCCCeEEE
Confidence 145888753 100 0011222 246699999999999996443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5e-06 Score=86.66 Aligned_cols=116 Identities=25% Similarity=0.327 Sum_probs=88.6
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (771)
+..|+.....+... ..+..+||+|||+|..... .....+++.|.+...+.-+++.. . .....+|+.
T Consensus 30 ~~~Wp~v~qfl~~~------~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~----~-~~~~~ad~l 95 (293)
T KOG1331|consen 30 AAPWPMVRQFLDSQ------PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSG----G-DNVCRADAL 95 (293)
T ss_pred cCccHHHHHHHhcc------CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCC----C-ceeehhhhh
Confidence 44555554444433 3578999999999987532 23346999999998876553321 1 167889999
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++|+.+.+||.+++..++||+.... .+..+++++.|+|+|||...+..++
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~----RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRE----RRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHH----HHHHHHHHHHHHhcCCCceEEEEeh
Confidence 9999999999999999999997644 4889999999999999998776655
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.1e-05 Score=78.92 Aligned_cols=108 Identities=12% Similarity=0.139 Sum_probs=79.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.+...+.... .+++++|+++.+++.|++.+... ...++++.+|..++....
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~------------- 111 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALES-GLKIDYRQTTAEELAAEH------------- 111 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHc-CCceEEEecCHHHhhhhc-------------
Confidence 45689999999999988887753 57999999999999999887421 225788888887764331
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
..+||+|++...-. .+ + -...+|+.+.+.|+|+|.+++....+.
T Consensus 112 -------------------~~~fD~Ii~~~~l~----~~---~---~~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 112 -------------------PGQFDVVTCMEMLE----HV---P---DPASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred -------------------CCCccEEEEhhHhh----cc---C---CHHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 25799998832101 11 0 125789999999999999998876543
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-05 Score=85.93 Aligned_cols=130 Identities=20% Similarity=0.150 Sum_probs=94.8
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEE
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~ 122 (771)
+|-+....+..+.+++ .+.+||++=|=||.++.+.+..|..+||+||.|..+|+.+++.+.-++ .+..|++
T Consensus 201 fFlDqR~~R~~l~~~~------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~ 274 (393)
T COG1092 201 FFLDQRDNRRALGELA------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV 274 (393)
T ss_pred eeHHhHHHHHHHhhhc------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh
Confidence 4444444455555554 378999999999999999999998899999999999998877665444 4578999
Q ss_pred eecCCC----CCCCCCccEEEeccccccccCcc--cchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 123 MDMTSM----QFMDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 123 ~D~~~l----~~~~~sFDlVi~~~~l~~l~~~~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+|+.+. .-...+||+|+.--.-..-.... ........++..+.++|+|||.+++++...
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999875 12345999999533222111111 011237788999999999999999998763
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.6e-05 Score=80.45 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=48.0
Q ss_pred CCcEEEEeccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 542 SVKAVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~---p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
..+||++|+|+|.++..+.+.. +..+|++||||+.++++|++.+ +++.++.+|...+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~ 109 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTT 109 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcc
Confidence 5699999999999999888764 3569999999999999999764 3588999998754
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.9e-05 Score=94.56 Aligned_cols=121 Identities=12% Similarity=0.179 Sum_probs=85.9
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC---C-------------CCCCeeEEEcchHHHHH
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF---T-------------QDKSLKVHITDGIKFVR 605 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~---~-------------~~~r~~v~i~Dg~~~l~ 605 (771)
..+||+||+|+|+++..|...+|..+|++|||+|.++++|++.... . ..+|++++.+|..+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 3589999999999999999999888999999999999999887632 1 12579999999987753
Q ss_pred hhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCC---CCCCCCCCC---------------cCCcCcc
Q 004164 606 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD---SPDSSSGMT---------------CPAADFV 667 (771)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~---s~d~~~g~s---------------~pp~~f~ 667 (771)
.. +.+||+|+...- .++. ..|+ .|...+.
T Consensus 199 ~~--------------------------------~~~fDlIVSNPPYI~~~e~-~~l~~eV~~~ep~~~~~~~~p~~AL~ 245 (1082)
T PLN02672 199 DN--------------------------------NIELDRIVGCIPQILNPNP-EAMSKLVTENASEEFLYSLSNYCALQ 245 (1082)
T ss_pred cc--------------------------------CCceEEEEECCCcCCCcch-hhcChhhhhccccccccccCcccccc
Confidence 21 136999987220 0000 0010 0112222
Q ss_pred c-----------HHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 668 E-----------GSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 668 ~-----------~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
. ...+..+.+.|+|||.+++++-.+..+
T Consensus 246 g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~ 284 (1082)
T PLN02672 246 GFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ 284 (1082)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence 2 567778888999999999999655544
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.02 E-value=4e-05 Score=80.86 Aligned_cols=121 Identities=22% Similarity=0.317 Sum_probs=84.2
Q ss_pred hhHHHHHHHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc---------------
Q 004164 50 WPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--------------- 113 (771)
Q Consensus 50 ~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~--------------- 113 (771)
+..+...|.+++.. .......+||..|||-|+++.+++..|+ .+.|.++|-.|+-...-.+..
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 44444455555431 1123467999999999999999999999 999999999886422211000
Q ss_pred --------------------------CCCCcEEEEeecCCCCCCC---CCccEEEeccccccccCcccchHHHHHHHHHH
Q 004164 114 --------------------------DRSDMRWRVMDMTSMQFMD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164 (771)
Q Consensus 114 --------------------------~~~~i~~~~~D~~~l~~~~---~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i 164 (771)
...++....+|+.++..++ ++||+|+....+|...+ +-.+++.|
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~N-------i~~Yi~tI 188 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAEN-------IIEYIETI 188 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHH-------HHHHHHHH
Confidence 0124666677777664344 79999998766665432 67999999
Q ss_pred HHccccCeEEEEEE
Q 004164 165 KRLLKSGGKFVCLT 178 (771)
Q Consensus 165 ~rvLkpGG~~ii~~ 178 (771)
.++|||||+.|=.-
T Consensus 189 ~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 189 EHLLKPGGYWINFG 202 (270)
T ss_pred HHHhccCCEEEecC
Confidence 99999999777544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.2e-05 Score=80.33 Aligned_cols=119 Identities=19% Similarity=0.300 Sum_probs=81.5
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCc
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (771)
.+.+.|.. .+....|-|+|||.+.++. .-...|+..|+.+ .+-.++.+||.+.|.++++.
T Consensus 170 ~ii~~ik~--r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 170 VIIRKIKR--RPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VNERVIACDMRNVPLEDESV 229 (325)
T ss_pred HHHHHHHh--CcCceEEEecccchhhhhh----ccccceeeeeeec--------------CCCceeeccccCCcCccCcc
Confidence 44445543 1356789999999998875 2234799999754 23456889999999999999
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh-hcchhhhh-ccCcEEEEee
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHA 202 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~-~~~l~~~~-~~~w~~~~~~ 202 (771)
|+++..-+|. ..+ +..++.++.|+|++||.+++.+...... ...+...+ ..|+.+....
T Consensus 230 DvaV~CLSLM---gtn-----~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 230 DVAVFCLSLM---GTN-----LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred cEEEeeHhhh---ccc-----HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 9999644333 222 7799999999999999999988652211 11233333 3366555443
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.9e-05 Score=81.12 Aligned_cols=106 Identities=21% Similarity=0.218 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCcchhH----HHHHhcC------CCeEEEEcCCHHHHHHHHHH-----hh--------------c--CC-
Q 004164 68 PPPQILVPGCGNSRLS----EHLYDAG------FHGITNVDFSKVVISDMLRR-----NV--------------R--DR- 115 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls----~~La~~g------~~~V~~vDiS~~~i~~~~~~-----~~--------------~--~~- 115 (771)
..-+|+-.||++|.-. ..|.+.+ .-+|+|+|+|..+|+.|+.- .. + .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3679999999999544 3333332 14899999999999988631 10 0 00
Q ss_pred --------CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 116 --------SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 116 --------~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..+.|...|+.+.++..+.||+|+|..++-++..+. ..+++..++..|+|||++++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~-----q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET-----QERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH-----HHHHHHHHHHHhCCCCEEEEcc
Confidence 247788888887764457899999999999986544 7899999999999999998854
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8e-05 Score=77.00 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=94.7
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 622 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 622 (771)
+-+|.||+|.|.....++...|+..+.+||+-..++..|-+...-..-++++++.+||.+++.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~------------- 116 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP------------- 116 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC-------------
Confidence 5689999999999999999999999999999999998887776321123899999999999998761
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 623 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
++..|-|.+- =+||..----.-..++.++|++.+.+.|+|||.|-+ .+....+.+.
T Consensus 117 -----------------~~sl~~I~i~--FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~--aTD~~~y~e~ 172 (227)
T COG0220 117 -----------------DGSLDKIYIN--FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF--ATDNEEYFEW 172 (227)
T ss_pred -----------------CCCeeEEEEE--CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE--EecCHHHHHH
Confidence 3478888873 344432111112569999999999999999999985 3455665544
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.6e-05 Score=83.34 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=85.6
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.++||.+=+=+|+.+.+..... -.+|+.||++...+++|++.+.+. ...+.+++++|+++|+++...
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~---------- 286 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER---------- 286 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh----------
Confidence 6889999999998876655543 239999999999999999999553 356799999999999999762
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.+.+||+||+|--+=-.+..+. ....=--...+..+.++|+|||++++-..++
T Consensus 287 -------------------~g~~fDlIilDPPsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 287 -------------------RGEKFDLIILDPPSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred -------------------cCCcccEEEECCcccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 3568999999752221111000 0000002345678889999999999755444
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.7e-05 Score=81.60 Aligned_cols=101 Identities=15% Similarity=0.037 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-----CCCCc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-----MDETF 135 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-----~~~sF 135 (771)
....+|||||+++|..+.+++.. + .++|+.+|.++...+.|++.....+ .+++++.+|+.+. + + ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 35679999999999999999875 2 3589999999999988877766554 6899999998764 2 1 13689
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
|+|+.-+- +.....++..+.++|+|||.+++-
T Consensus 158 D~iFiDad----------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDAD----------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecCC----------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99995321 123668899999999999997764
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.2e-06 Score=91.70 Aligned_cols=117 Identities=21% Similarity=0.251 Sum_probs=77.6
Q ss_pred HHHHHHHHhhCCC-CCCCCCeEEEEcCCcchhHHHHHhcCCCeEE--EEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 52 QLRDPLISLIGAP-TSSPPPQILVPGCGNSRLSEHLYDAGFHGIT--NVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~-~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~--~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
.+.+.+.+.+... ....-..+||+|||+|.++..|.+.+...++ .-|..+..++.+.++- -...+-.+--..+
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG----vpa~~~~~~s~rL 175 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG----VPAMIGVLGSQRL 175 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC----cchhhhhhccccc
Confidence 3334455555321 1122357999999999999999998762221 2266666666665542 1122223334578
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
||++++||+|.+..++......+ ..+|-++.|+|+|||+|+.+.
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~------g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND------GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cCCccchhhhhcccccccchhcc------cceeehhhhhhccCceEEecC
Confidence 99999999999988876544332 268999999999999988764
|
; GO: 0008168 methyltransferase activity |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.97 E-value=4e-05 Score=79.05 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=79.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||.||+|.|.+...+.... .+++++|+++.+++.|++.+.-....++++..+|+.++....
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~------------- 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG------------- 109 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-------------
Confidence 46789999999999888777654 469999999999999999874322225888889988774321
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+||+|++.-.-. ... -...+|+.+++.|+++|.+++....+
T Consensus 110 -------------------~~~~D~i~~~~~l~----~~~------~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 110 -------------------AKSFDVVTCMEVLE----HVP------DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -------------------CCCccEEEehhHHH----hCC------CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 25799998732100 010 12679999999999999998876543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.3e-05 Score=84.39 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=72.1
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
+.+||+||+|.|..+.+|... ..+|++||+++.+++.|++...-. .-++++...|....- .
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-~l~v~~~~~D~~~~~--~-------------- 181 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-NLNIRTGLYDINSAS--I-------------- 181 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEechhccc--c--------------
Confidence 458999999999999998875 369999999999999998876321 125777777764420 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+||+|+.-. . . ..+++.. -..+++.+.+.|+|||++++
T Consensus 182 ------------------~~~fD~I~~~~--v--l--~~l~~~~--~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 ------------------QEEYDFILSTV--V--L--MFLNRER--IPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ------------------cCCccEEEEcc--h--h--hhCCHHH--HHHHHHHHHHhcCCCcEEEE
Confidence 25799998721 0 0 0001111 25789999999999998665
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.4e-05 Score=81.86 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....++++||+|.|.++.-+...+|+++++++|+ |.|++.|++ .+|++++-+|-. ...+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f---~~~P----------- 157 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF---DPLP----------- 157 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT---TCCS-----------
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH---hhhc-----------
Confidence 3456899999999999999999999999999999 999999998 689999999876 3332
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCC--cEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~--Gilv~N 688 (771)
. +|+|++ +.--... |+. --...|+++++.|+|| |.++|.
T Consensus 158 ---------------------~-~D~~~l----~~vLh~~--~d~--~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 158 ---------------------V-ADVYLL----RHVLHDW--SDE--DCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp ---------------------S-ESEEEE----ESSGGGS---HH--HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred ---------------------c-ccceee----ehhhhhc--chH--HHHHHHHHHHHHhCCCCCCeEEEE
Confidence 3 999998 1100000 011 1256799999999988 877764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00014 Score=78.78 Aligned_cols=114 Identities=12% Similarity=0.132 Sum_probs=75.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
+.+.+||.+|+|+|..+..|...++ ..++++||++++|++.|++.+.-. ..-++..+++|..+.+.-...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~-------- 133 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPE-------- 133 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcc--------
Confidence 3456899999999999998888876 579999999999999998876310 223466688998764332210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.......+++.+ +. .+.. ++.. ...||+.+++.|+|||.|++.+
T Consensus 134 --------------------~~~~~~~~~~~g--s~---~~~~-~~~e--~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 134 --------------------PAAGRRLGFFPG--ST---IGNF-TPEE--AVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred --------------------cccCCeEEEEec--cc---ccCC-CHHH--HHHHHHHHHHhcCCCCEEEEec
Confidence 000122333332 11 1111 1222 2579999999999999999755
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=76.19 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=75.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHh----CCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~----~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
..+.+||+||+|+|.++..|... .+..+|++||++|.+++.|++.... +++++++.|+-.. ..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~l-~~--------- 125 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---PGVTFRQAVSDEL-VA--------- 125 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---CCCeEEEEecccc-cc---------
Confidence 45678999999999988887754 3456999999999999999988642 3466666655332 10
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
.+.+||+|++- ....- ++++. -..+|+.+.+.++ |.+++|-..+...
T Consensus 126 -----------------------~~~~fD~V~~~----~~lhh--~~d~~--~~~~l~~~~r~~~--~~~~i~dl~~~~~ 172 (232)
T PRK06202 126 -----------------------EGERFDVVTSN----HFLHH--LDDAE--VVRLLADSAALAR--RLVLHNDLIRSRL 172 (232)
T ss_pred -----------------------cCCCccEEEEC----Ceeec--CChHH--HHHHHHHHHHhcC--eeEEEeccccCHH
Confidence 13579999982 11100 11111 1468999999887 6777777777653
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=75.66 Aligned_cols=89 Identities=10% Similarity=0.062 Sum_probs=65.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|.++..|...+ ..+|++||+++.|++.|++.- ..+++|+... +
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l----p------------ 105 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL----P------------ 105 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC----C------------
Confidence 35789999999999999888886 469999999999999998641 2356776542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-cHHHHHHHHHccCCC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQ 682 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-~~~fl~~~~~~L~~~ 682 (771)
..+.+||+|++ .. ++ ..+. -+..++.+.+.|+|.
T Consensus 106 -----------------~~d~sfD~v~~----~~---~l----~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 106 -----------------FRDKSFDVVMS----SF---AL----HASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred -----------------CCCCCEEEEEe----cC---hh----hccCCHHHHHHHHHHHhcCc
Confidence 12478999998 11 11 1121 266999999999994
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.5e-05 Score=79.50 Aligned_cols=104 Identities=16% Similarity=0.071 Sum_probs=74.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeeEEEcchHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~------------~~~r~~v~i~Dg~~~l~~~~ 608 (771)
...+||++|+|.|.-+.+|..+ +.+|++||++|..++.|.+.-++. ...+++++++|..++-...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~- 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD- 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence 3469999999999999999886 368999999999999875544442 2467888999988762110
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
...||.|+- .. .-+.+||.. ...+++.+.++|+|||+++
T Consensus 114 -------------------------------~~~fd~v~D----~~--~~~~l~~~~--R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 114 -------------------------------LADVDAVYD----RA--ALIALPEEM--RERYVQQLAALLPAGCRGL 152 (218)
T ss_pred -------------------------------CCCeeEEEe----hH--hHhhCCHHH--HHHHHHHHHHHcCCCCeEE
Confidence 146888863 10 112223332 4789999999999998533
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=6e-05 Score=75.22 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=83.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C--CCeEEEEcCCHHHHHHHHHHhhcC-----------CCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRD-----------RSD 117 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g--~~~V~~vDiS~~~i~~~~~~~~~~-----------~~~ 117 (771)
.+...+.++|.. ...|+.+.||+|.|+|.++..++.. | ....+|||.-+..++..++...+. ..+
T Consensus 67 ~mha~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 67 HMHATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 444455555541 1158999999999999999888754 2 335599999999998776654322 246
Q ss_pred cEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 118 MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 118 i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+.++.+|.....-+..+||.|.+.... .+..+++...|++||++++--
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa-------------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA-------------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc-------------cccHHHHHHhhccCCeEEEee
Confidence 889999999887778899999975222 255788889999999988754
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.1e-05 Score=81.03 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=72.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHH---HhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLA---EDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA---~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
..+||+||+|.|.++..+....+. .|++||+++.++..+ +++.+ .+.+++++.+|..+. .
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~l----p---------- 185 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQL----P---------- 185 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHC----C----------
Confidence 478999999999998888887655 699999999988643 23333 245789988876543 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
. ...||+|++ .....-+. --..+|+.+++.|+|||.|++..
T Consensus 186 -------------------~-~~~FD~V~s----~~vl~H~~------dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 -------------------A-LKAFDTVFS----MGVLYHRR------SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred -------------------C-cCCcCEEEE----CChhhccC------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 0 256999997 11000010 12678999999999999999864
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00013 Score=73.64 Aligned_cols=107 Identities=11% Similarity=0.039 Sum_probs=77.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
..++|++++|+|+++..+..... .+|+.||+|+..++++++.+... -.++++++.+|+.+++.....
T Consensus 50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~----------- 117 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK----------- 117 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-----------
Confidence 46899999999999988888754 38999999999999999887322 135799999999999865431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHH--ccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~--~L~~~Gilv~Nl 689 (771)
....||+|++|-.=. .-...+.++.+.+ .|+++|++++--
T Consensus 118 ------------------~~~~~dvv~~DPPy~-----------~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 118 ------------------KPTFDNVIYLDPPFF-----------NGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred ------------------cCCCceEEEECcCCC-----------CCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 113489999953111 1123455555544 589999998754
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.9e-05 Score=86.95 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++..++|+|||.|..+.+++..+...++++|+++.-+......+.... ....++..|+.++||+++.||.+....+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 4677999999999999999988876699999999988876655443322 34556889999999999999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.|.++.. .+++++.|+++|||++++.++.
T Consensus 189 ~~~~~~~-------~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 189 CHAPDLE-------KVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred ccCCcHH-------HHHHHHhcccCCCceEEeHHHH
Confidence 9988755 9999999999999999987754
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=68.29 Aligned_cols=102 Identities=28% Similarity=0.382 Sum_probs=73.5
Q ss_pred EEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCC--CCCCC-CCccEEEecccc
Q 004164 72 ILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTS--MQFMD-ETFDVILDKGGL 144 (771)
Q Consensus 72 ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~~~~~--i~~~~~D~~~--l~~~~-~sFDlVi~~~~l 144 (771)
++|+|||+|..+ .+..... ..++++|+++.++......... ... +.+...|... +++.. ..||++.....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 3333322 3789999999999874433322 222 6888888886 67776 489999444444
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
++.. ....+.++.+.|+|+|.+++.......
T Consensus 130 ~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--------PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--------HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4432 248899999999999999998876433
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.1e-05 Score=78.59 Aligned_cols=114 Identities=20% Similarity=0.231 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CC--CCCc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FM--DETF 135 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~--~~sF 135 (771)
++.++||+||++|.++..+.+.+ ...|+|+|+.+. ...+.+.++++|+.+.. +. .+.|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 45899999999999999999987 469999999884 12244555566654421 11 2689
Q ss_pred cEEEeccccccccCcccc----hHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh
Q 004164 136 DVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~----~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~ 192 (771)
|+|++-++.......... ..+....+.-+...|++||.|++-.+..+... .+....
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~-~~~~~l 152 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIE-ELIYLL 152 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSH-HHHHHH
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHH-HHHHHH
Confidence 999998855544332211 12355666677788999999999888765543 444444
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=6e-05 Score=74.95 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=84.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCee-EEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK-VHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~-v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+|.||+|+|.--.|.-.. |..+|+.+|.+|.|-++|.+-+.=.....+. ++++||.+.. +++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~-~l~----------- 142 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP-QLA----------- 142 (252)
T ss_pred CccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc-ccc-----------
Confidence 3456899999999775553322 6779999999999999999988432334454 8899998752 222
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeC--CCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDV--DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~--~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
+.+||+|+.-+ .|-.. | ...|++++++|+|||.+++= -.-....
T Consensus 143 --------------------d~s~DtVV~TlvLCSve~------~------~k~L~e~~rlLRpgG~iifi--EHva~~y 188 (252)
T KOG4300|consen 143 --------------------DGSYDTVVCTLVLCSVED------P------VKQLNEVRRLLRPGGRIIFI--EHVAGEY 188 (252)
T ss_pred --------------------cCCeeeEEEEEEEeccCC------H------HHHHHHHHHhcCCCcEEEEE--ecccccc
Confidence 47899998643 22211 1 78899999999999998853 2323333
Q ss_pred HHHHHHHHHhccc
Q 004164 698 DMVISRMKMVFNH 710 (771)
Q Consensus 698 ~~v~~~l~~vF~~ 710 (771)
......+++++..
T Consensus 189 ~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 189 GFWNRILQQVAEP 201 (252)
T ss_pred hHHHHHHHHHhch
Confidence 4444555666664
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0001 Score=84.05 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=78.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~----------- 358 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW----------- 358 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh-----------
Confidence 44689999999999999888775 48999999999999999987432235799999999998765320
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
.+..||+|++|.-. .| +..++++.+.+ |++++++.+-
T Consensus 359 ------------------~~~~~D~vi~dPPr----~G--------~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 359 ------------------AGQIPDVLLLDPPR----KG--------CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred ------------------cCCCCCEEEECcCC----CC--------CCHHHHHHHHh-cCCCEEEEEc
Confidence 12469999996421 12 34788887664 8898876653
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.3e-05 Score=71.60 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=69.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||.||+|.|.++..++... . ++++||+++.+++. ..+.....+.... .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~-~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~--~------------- 73 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG-F-EVTGVDISPQMIEK----------RNVVFDNFDAQDP--P------------- 73 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT-S-EEEEEESSHHHHHH----------TTSEEEEEECHTH--H-------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-C-EEEEEECCHHHHhh----------hhhhhhhhhhhhh--h-------------
Confidence 466899999999999999887764 3 99999999999998 1111111111111 0
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCCh
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 694 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 694 (771)
.....||+|++- .. ...+ + --..+|+.+++.|+|||++++....+..
T Consensus 74 ------------------~~~~~fD~i~~~--~~--l~~~---~---d~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 74 ------------------FPDGSFDLIICN--DV--LEHL---P---DPEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp ------------------CHSSSEEEEEEE--SS--GGGS---S---HHHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred ------------------ccccchhhHhhH--HH--Hhhc---c---cHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 013689999982 11 1111 1 1378999999999999999999877643
|
... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.4e-05 Score=86.77 Aligned_cols=101 Identities=21% Similarity=0.262 Sum_probs=70.7
Q ss_pred CCcEEEEeccccHHHHHHHHhC----CCCcEEEEEcCHHHHHHHHhh---cCCCCCCCeeEEEcchHHHHHhhccCCccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECM----PFVGIEAVELDLTMLNLAEDY---FGFTQDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~----p~~~i~~VEiD~~v~~vA~~~---Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
..-||+||.|.|.|.++..+.. ...+|.+||-+|..+...++. =++ +++|+|+.+|..++ +.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v--~l------- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREV--EL------- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTS--CH-------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCC--CC-------
Confidence 4569999999999998877664 346999999999766554332 233 67899999999887 22
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
..++|+||.-+-.+-. -.+ +.++.|....+.|+|+|+++
T Consensus 256 -------------------------pekvDIIVSElLGsfg-------~nE-l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 -------------------------PEKVDIIVSELLGSFG-------DNE-LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -------------------------SS-EEEEEE---BTTB-------TTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred -------------------------CCceeEEEEeccCCcc-------ccc-cCHHHHHHHHhhcCCCCEEe
Confidence 2589999987644321 122 44788999999999999988
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=83.54 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCCccEEE---
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVIL--- 139 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDlVi--- 139 (771)
.++.+|||++||+|.-|.+++.. +.+.|+++|+++.-++.+++...+.+ .++.+...|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 68899999999999999999886 33589999999999998877776555 56788888887653 2246799999
Q ss_pred -eccccccccCcccc-----------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 140 -DKGGLDALMEPELG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 140 -~~~~l~~l~~~~~~-----------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|.|.-..-.+++.- .....++|....++|||||+++-+|.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 33322111122110 012678999999999999999998876
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.3e-05 Score=83.02 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=79.4
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 622 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 622 (771)
.+||++++|.|.++..+....+..+|+++|+||..++.+++...+..-+.++++.+|+.+++.. .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~-------------- 123 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-E-------------- 123 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-c--------------
Confidence 5799999999999988877666568999999999999999987432224567999999998754 2
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 623 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
.+||+|++|.+ |. | .+|+..+...++++|++.+-
T Consensus 124 ------------------~~fD~V~lDP~------Gs--~------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 124 ------------------RKFDVVDIDPF------GS--P------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------------------CCCCEEEECCC------CC--c------HHHHHHHHHHhcCCCEEEEE
Confidence 45999999764 11 1 67888888889999999975
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=79.97 Aligned_cols=101 Identities=7% Similarity=0.055 Sum_probs=73.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
+.+||++|+|.|.++..|.... .+|++||+++.+++.|++......-++++++.+|+.++.....
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~------------- 238 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQG------------- 238 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcC-------------
Confidence 4789999999999999888853 6899999999999999988622112469999999998864321
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..||+|++|. |..=+..+.++.+.. +.|++++.+-.
T Consensus 239 -------------------~~~D~Vv~dP------------Pr~G~~~~~~~~l~~-~~~~~ivyvsc 274 (315)
T PRK03522 239 -------------------EVPDLVLVNP------------PRRGIGKELCDYLSQ-MAPRFILYSSC 274 (315)
T ss_pred -------------------CCCeEEEECC------------CCCCccHHHHHHHHH-cCCCeEEEEEC
Confidence 4599999962 222123555555444 67777766543
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00052 Score=73.38 Aligned_cols=128 Identities=17% Similarity=0.223 Sum_probs=85.4
Q ss_pred ccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CC
Q 004164 513 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QD 590 (771)
Q Consensus 513 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~ 590 (771)
||-..-.+.++...+ +.++||.+=.=+|+...+.... ...+|+.||++...+++|++.+.+. ..
T Consensus 108 FlDqR~nR~~v~~~~-------------~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~ 173 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA-------------KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDL 173 (286)
T ss_dssp -GGGHHHHHHHHHHC-------------TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CC
T ss_pred cHHHHhhHHHHHHHc-------------CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 555556677665532 3479999999999888776544 3348999999999999999998432 23
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-cc-
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VE- 668 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-~~- 668 (771)
++++++.+|+++|+++... ..+||+||+|.-+-.. ..| +.
T Consensus 174 ~~~~~~~~Dvf~~l~~~~~------------------------------~~~fD~IIlDPPsF~k--------~~~~~~~ 215 (286)
T PF10672_consen 174 DRHRFIQGDVFKFLKRLKK------------------------------GGRFDLIILDPPSFAK--------SKFDLER 215 (286)
T ss_dssp TCEEEEES-HHHHHHHHHH------------------------------TT-EEEEEE--SSEES--------STCEHHH
T ss_pred cceEEEecCHHHHHHHHhc------------------------------CCCCCEEEECCCCCCC--------CHHHHHH
Confidence 6899999999999987642 3589999997532211 111 12
Q ss_pred --HHHHHHHHHccCCCcEEEEEeccC
Q 004164 669 --GSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 669 --~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.+.+..+.++|+|||+++.-..+.
T Consensus 216 ~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 216 DYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 345677888899999988655433
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=79.99 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=77.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...++|++|+|+|+++..+... ...++++|+|+.+++.|+..+ |+. .++++.+|+.+. .
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~---~i~~~~~D~~~l----~--------- 243 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIE---DFFVKRGDATKL----P--------- 243 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCC---CCeEEecchhcC----C---------
Confidence 4468999999999887655443 468999999999999998776 542 288999998753 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC--cccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD--FVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~--f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.....||+|+.|.--+.. .+. .... -+-..+|+.+++.|+|||.+++-+...
T Consensus 244 --------------------~~~~~~D~Iv~dPPyg~~-~~~--~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 244 --------------------LSSESVDAIATDPPYGRS-TTA--AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred --------------------cccCCCCEEEECCCCcCc-ccc--cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 012579999997421111 001 0111 123789999999999999999866443
|
This family is found exclusively in the Archaea. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00049 Score=74.88 Aligned_cols=181 Identities=14% Similarity=0.202 Sum_probs=104.3
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--------CCCeEEEEcCCHHHHHHHHHHhhc
Q 004164 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------GFHGITNVDFSKVVISDMLRRNVR 113 (771)
Q Consensus 42 ~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--------g~~~V~~vDiS~~~i~~~~~~~~~ 113 (771)
+...-|.....+...+.+++.. .++.+|||.+||+|.+...+.+. ...+++|+|+++.++..++-.+.-
T Consensus 23 k~~G~~~TP~~i~~l~~~~~~~---~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l 99 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLLNP---KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL 99 (311)
T ss_dssp TSCGGC---HHHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred cccceeehHHHHHHHHHhhhhc---cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence 4445566677888899999865 56778999999999998877762 345899999999998766543322
Q ss_pred CC---CCcEEEEeecCCCCCC--CCCccEEEeccccccc--cCccc------------chHHHHHHHHHHHHccccCeEE
Q 004164 114 DR---SDMRWRVMDMTSMQFM--DETFDVILDKGGLDAL--MEPEL------------GHKLGNQYLSEVKRLLKSGGKF 174 (771)
Q Consensus 114 ~~---~~i~~~~~D~~~l~~~--~~sFDlVi~~~~l~~l--~~~~~------------~~~~~~~~l~~i~rvLkpGG~~ 174 (771)
.+ ....+...|....+.. ...||+|+++-.+... ..... ....--.++..+.+.|++||++
T Consensus 100 ~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 100 HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred hccccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 22 2345788887665432 4789999987655543 11110 0011234788899999999998
Q ss_pred EEEEcCc----chhhcchhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEEcCC
Q 004164 175 VCLTLAE----SHVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (771)
Q Consensus 175 ii~~~~~----~~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (771)
+++.... ......+...+ ...+-..+..++..-=.....+...++.+|...
T Consensus 180 ~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 180 AIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp EEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred eEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence 7776431 11111222233 223444556665322223556668888888764
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.80 E-value=5e-05 Score=76.18 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=82.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (771)
..+++.+..++... .-++.++||+-||+|.++.+.+.+|..+|+.||.++.++..+++.....+ .++..++.|....
T Consensus 26 drvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 26 DRVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp HHHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred HHHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence 34555566666531 02689999999999999999999999999999999999987766554433 3478888886542
Q ss_pred -C---CCCCCccEEEeccccccccCcccchHH-HHHHHHHHH--HccccCeEEEEEEcCc
Q 004164 129 -Q---FMDETFDVILDKGGLDALMEPELGHKL-GNQYLSEVK--RLLKSGGKFVCLTLAE 181 (771)
Q Consensus 129 -~---~~~~sFDlVi~~~~l~~l~~~~~~~~~-~~~~l~~i~--rvLkpGG~~ii~~~~~ 181 (771)
. ....+||+|+.--.... .. +..++..+. .+|+++|.+++-....
T Consensus 105 l~~~~~~~~~fDiIflDPPY~~--------~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPYAK--------GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHCTS-EEEEEE--STTS--------CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHhhcccCCCceEEEECCCccc--------chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 1 24689999995322221 12 367777776 7999999988876553
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0003 Score=73.95 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C--CCeEEEEcCCHHHHHHHHHHhhcCC-CCc-EEEEeecCCCC---CCCCCccEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRDR-SDM-RWRVMDMTSMQ---FMDETFDVI 138 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g--~~~V~~vDiS~~~i~~~~~~~~~~~-~~i-~~~~~D~~~l~---~~~~sFDlV 138 (771)
...-+||||.||.|+........ + ..+|...|+|+..++..++..++.+ .++ +|.+.|+.+.. --+...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999999999988766654 3 3589999999999998877776655 444 99999998742 123457999
Q ss_pred EeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 139 i~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+..|.+..+++.+ .+...+.-+.+.+.|||++|...
T Consensus 214 iVsGL~ElF~Dn~----lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDND----LVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhCCcHH----HHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999999887644 47788999999999999988764
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.8e-05 Score=80.20 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=71.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHH---HHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL---AEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~v---A~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.+...+....+. .|++||+++.++.. ++++.+ .+.++.+...|..+. .
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~l----p--------- 184 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQL----H--------- 184 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHC----C---------
Confidence 4578999999999988777776543 79999999999864 344443 245777777664332 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
....||+|+. .....-+ . --..+|+.+++.|+|||.|++...
T Consensus 185 ---------------------~~~~FD~V~s----~gvL~H~----~--dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 185 ---------------------ELYAFDTVFS----MGVLYHR----K--SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred ---------------------CCCCcCEEEE----cchhhcc----C--CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 0146999987 1110001 0 115799999999999999998643
|
Known examples to date are restricted to the proteobacteria. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=74.46 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=74.6
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEE
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRV 122 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~ 122 (771)
|......-+..+.+.+ .++..|||+.||-|.++..++.. ..+.|+++|++|.+++.+++...... ..+..+.
T Consensus 84 fs~rl~~Er~Ri~~~v-----~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~ 158 (200)
T PF02475_consen 84 FSPRLSTERRRIANLV-----KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVIN 158 (200)
T ss_dssp --GGGHHHHHHHHTC-------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEE
T ss_pred EccccHHHHHHHHhcC-----CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEc
Confidence 3333333444565555 36899999999999999999984 34589999999999997766544333 4688999
Q ss_pred eecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 123 MDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 123 ~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
+|..++.. .+.||-|++...-.. ..+|....+++++||.+-
T Consensus 159 ~D~~~~~~-~~~~drvim~lp~~~-----------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 159 GDAREFLP-EGKFDRVIMNLPESS-----------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S-GGG----TT-EEEEEE--TSSG-----------GGGHHHHHHHEEEEEEEE
T ss_pred CCHHHhcC-ccccCEEEECChHHH-----------HHHHHHHHHHhcCCcEEE
Confidence 99998754 789999997543332 257888999999998763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.78 E-value=7e-05 Score=77.22 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++..+... ..+|++||++|.+++.|++.+... ..+++.++++|..+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------------- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------------- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------------
Confidence 34678999999999999988875 358999999999999999987432 124789998887553
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+||+|+. ++... .|+.. -..+++.+.+.+++++++.+
T Consensus 117 ---------------------~~~fD~ii~~~~l~~-------~~~~~--~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 ---------------------CGEFDIVVCMDVLIH-------YPASD--MAKALGHLASLTKERVIFTF 156 (219)
T ss_pred ---------------------CCCcCEEEEhhHHHh-------CCHHH--HHHHHHHHHHHhCCCEEEEE
Confidence 146999986 22111 01222 25578888888886666554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.5e-05 Score=77.96 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=91.4
Q ss_pred ccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCH
Q 004164 22 LGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (771)
Q Consensus 22 ~~~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~ 101 (771)
...|....|-+.+|.... + ...-.+-..-..+.+.+.+.. ....+.++||||||+-.....-+..-+.+|+..|+++
T Consensus 13 ~~~FdP~~Yl~~yY~~~~-~-~~~~~~~~~~~L~~l~~~f~~-g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~ 89 (256)
T PF01234_consen 13 QEEFDPRAYLDTYYSFPS-G-DDAEDEILLFFLKNLHETFSS-GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSE 89 (256)
T ss_dssp HHHB-HHHHHHHHHSTSS-S--CHHHHHHHHHHHHHHHHHHT-SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSH
T ss_pred HhcCCHHHHHHHhcCCCc-c-CcccchhHHHHHHHHHHHhCc-cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccH
Confidence 355777888888886542 1 111000111122233444432 1235679999999996554333333467899999999
Q ss_pred HHHHHHHHHhhcCC-----------------------------CCcE-EEEeecCCCC-CCC-----CCccEEEeccccc
Q 004164 102 VVISDMLRRNVRDR-----------------------------SDMR-WRVMDMTSMQ-FMD-----ETFDVILDKGGLD 145 (771)
Q Consensus 102 ~~i~~~~~~~~~~~-----------------------------~~i~-~~~~D~~~l~-~~~-----~sFDlVi~~~~l~ 145 (771)
.-++...+-....+ ..++ ++..|+.+.+ +.. ..||+|++..+|.
T Consensus 90 ~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE 169 (256)
T PF01234_consen 90 QNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLE 169 (256)
T ss_dssp HHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHH
T ss_pred hhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHH
Confidence 99876654332110 1132 6678888763 332 2599999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
......+ ...++++++.++|||||.|++....
T Consensus 170 ~a~~d~~---~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 170 SACKDLD---EYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp HH-SSHH---HHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HHcCCHH---HHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 8765433 3889999999999999999997654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=77.35 Aligned_cols=147 Identities=14% Similarity=0.219 Sum_probs=77.0
Q ss_pred CCCcEEEEecccc-HHHHHHH-HhCCCCcEEEEEcCHHHHHHHHhhcC--CCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAG-LLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G-~l~~~L~-~~~p~~~i~~VEiD~~v~~vA~~~Fg--~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.|.+|+.||.|.= ..+..|. .+.+...|+.+|+||+.++.|++-.+ +.-+.+++++.+|+.+.-.+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--------- 190 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--------- 190 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---------
Confidence 4679999999965 3344444 45677899999999999999988654 123789999999997653322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
..||+|++-+--+ |.. =--.+.|+.+.+.++||..+++=-...-..+
T Consensus 191 ------------------------~~~DvV~lAalVg-----~~~----e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~ 237 (276)
T PF03059_consen 191 ------------------------KEYDVVFLAALVG-----MDA----EPKEEILEHLAKHMAPGARLVVRSAHGLRSF 237 (276)
T ss_dssp ---------------------------SEEEE-TT-S-------------SHHHHHHHHHHHS-TTSEEEEEE--GGGGG
T ss_pred ------------------------ccCCEEEEhhhcc-----ccc----chHHHHHHHHHhhCCCCcEEEEecchhhHHH
Confidence 4699999944332 211 1247899999999999999987521111111
Q ss_pred HHHHHH--HHHHhccceEEeeecCC-ccEEEEEecCC
Q 004164 697 KDMVIS--RMKMVFNHLFCLQLEED-VNLVLFGLSSE 730 (771)
Q Consensus 697 ~~~v~~--~l~~vF~~v~~~~~~~~-~N~Vl~a~~~~ 730 (771)
....++ .++ -|..+..+....+ .|.|+|+.+..
T Consensus 238 LYp~vd~~~l~-gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 238 LYPVVDPEDLR-GFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp SS----TGGGT-TEEEEEEE---TT---EEEEE----
T ss_pred cCCCCChHHCC-CeEEEEEECCCCCceeEEEEEEecc
Confidence 111111 122 5665555554443 68999998754
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=76.67 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=68.9
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (771)
...+...+.. .+++.|||||+|.|.+|..|++.+. .|+++++++.++..++++.. ...+++.+.+|+...+++.-
T Consensus 19 ~~kIv~~a~~---~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 19 IDKIVEAANI---SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHhcCC---CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchhh
Confidence 3444444443 5689999999999999999999987 79999999999998877763 55789999999999988743
Q ss_pred -CccEEEeccc
Q 004164 134 -TFDVILDKGG 143 (771)
Q Consensus 134 -sFDlVi~~~~ 143 (771)
.++.|+++-.
T Consensus 94 ~~~~~vVaNlP 104 (259)
T COG0030 94 AQPYKVVANLP 104 (259)
T ss_pred cCCCEEEEcCC
Confidence 6788887643
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=80.90 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=48.3
Q ss_pred CeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 004164 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (771)
.++||++||+|.++..|++. ..+|+++|+++.+++.+++.+...+ .+++|+++|+.+.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 57999999999999988876 4589999999999998876654443 4799999998763
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0001 Score=79.42 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=85.1
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~ 148 (771)
-...+|+|.|.|+.+..+.. -+.+|-++++....+..++.... +.+..+-+|+.+- .|. -|+||.+.+||++.
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc---CCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 37899999999999999988 46679999999988876655442 5589999999876 443 46999999999998
Q ss_pred CcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 149 ~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.+ ..++|++++..|+|||.+++.+..
T Consensus 251 Ded-----cvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 251 DED-----CVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred hHH-----HHHHHHHHHHhCCCCCEEEEEecc
Confidence 876 889999999999999999999874
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=81.45 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=73.3
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
+.+|||++||+|..+..++.. +...|+++|+++.+++.+++.....+ .++.+.++|+..+....+.||+|+..-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 468999999999999999775 55689999999999997765543333 4567899998764221467999986431
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
..+ ..++....+.+++||.++++
T Consensus 135 -Gs~-------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSP-------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCc-------HHHHHHHHHHhcCCCEEEEE
Confidence 221 26777777888999998887
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00015 Score=80.42 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=48.5
Q ss_pred CeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 004164 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (771)
.+|||++||+|.++..|++.. .+|+++|+++.+++.+++.+...+ .+++++++|+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 479999999999999888764 599999999999998876654443 4789999998763
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00031 Score=75.04 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=80.3
Q ss_pred CeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcC-----CCCcEEEEeecCCC-CCCCCCccEEEecc
Q 004164 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSM-QFMDETFDVILDKG 142 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~-----~~~i~~~~~D~~~l-~~~~~sFDlVi~~~ 142 (771)
.+||.||.|.|..+.++.+.. ..+++.||+++.+++.+++-+... .++++.+..|..+. .-..++||+|+.-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999985 579999999999999887665433 27889999998876 21224899999654
Q ss_pred ccccccCcccchHH-HHHHHHHHHHccccCeEEEEEE
Q 004164 143 GLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 143 ~l~~l~~~~~~~~~-~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+=. .. +. +.+ -..+++.+++.|+++|+++..+
T Consensus 158 tdp-~g-p~--~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDP-VG-PA--EALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCC-CC-cc--cccCCHHHHHHHHHhcCCCcEEEEec
Confidence 333 11 10 001 2589999999999999999883
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00025 Score=71.65 Aligned_cols=116 Identities=19% Similarity=0.158 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (771)
.++..|+||||-+|.++..+++... ..|+++|+.| | ...+++.++++|++.-+ +....+|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-----~-----~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-----M-----KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-----c-----ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 5789999999999999999988732 3599999988 3 23467999999998753 4455679
Q ss_pred EEEecccccccc----CcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhc
Q 004164 137 VILDKGGLDALM----EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFR 193 (771)
Q Consensus 137 lVi~~~~l~~l~----~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~ 193 (771)
+|++-++-..-. +......+...++.-...+|+|||.|++-.+-.... +.++..++
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~-~~~l~~~~ 173 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF-EDLLKALR 173 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH-HHHHHHHH
Confidence 999655441111 101111246788888889999999999988764443 33444444
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=80.02 Aligned_cols=101 Identities=8% Similarity=0.073 Sum_probs=76.3
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|.|.++..+... ..+|++||+|+..++.|++......-++++++.+|..+++....
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~------------- 298 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM------------- 298 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC-------------
Confidence 358999999999998888754 36899999999999999988732222379999999999875422
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.+||+|++|- |..=+..++++.+.. ++|++++.+-.
T Consensus 299 -------------------~~~D~vi~DP------------Pr~G~~~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 299 -------------------SAPELVLVNP------------PRRGIGKELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred -------------------CCCCEEEECC------------CCCCCcHHHHHHHHh-cCCCeEEEEEe
Confidence 3499999962 222234777777764 78998888653
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00022 Score=81.57 Aligned_cols=104 Identities=12% Similarity=0.070 Sum_probs=76.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.+..
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~------------ 362 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP------------ 362 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh------------
Confidence 34689999999999999888875 5899999999999999988732222469999999998864421
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.....||+|++|.- ..|+ .+.++.+.+ |++++++.+-+
T Consensus 363 -----------------~~~~~fD~Vi~dPP----r~g~---------~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 363 -----------------WALGGFDKVLLDPP----RAGA---------AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred -----------------hhcCCCCEEEECcC----CcCh---------HHHHHHHHh-cCCCeEEEEEe
Confidence 01246999999531 1122 456666655 68899887654
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=6.8e-05 Score=76.46 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=72.7
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+-++.+|+|.|-.+..+..++ -+|+++|++++|+++|++++... .+-..+..-.++++.+.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--------------- 96 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--------------- 96 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC---------------
Confidence 3478999999998888999996 37999999999999999999642 11222333333333321
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCc-EEEEEecc
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVNLVS 691 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~G-ilv~Nl~~ 691 (771)
..++.|+|++ ... -.=|--++|++.+++.|+++| ++++....
T Consensus 97 ------------------~e~SVDlI~~----Aqa-------~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 97 ------------------GEESVDLITA----AQA-------VHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ------------------CCcceeeehh----hhh-------HHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 1367999987 210 112345889999999997755 88876654
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00039 Score=73.40 Aligned_cols=96 Identities=13% Similarity=0.236 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhh-----cCCCCcEEEEeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~-----~~~~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
+...+||-+|.|.|...+++.++.. +|+.||+++.+++.+++-+. -..|+++++.. +. .-..++||+||.-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence 3568999999999999999999865 99999999999987765221 13367777652 21 1123689999965
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.+ .+ ....+.+++.|+|||.++.-.
T Consensus 147 s~----~~--------~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PD--------IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CC--------hHHHHHHHHhcCCCcEEEECC
Confidence 43 11 267789999999999998864
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00017 Score=74.70 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=68.1
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDET 134 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~s 134 (771)
+...+.....++.+.|||+|.|||.+|..|.+.|. +|+++++++.|+....++..... ..+.++.+|+...+++ .
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~ 123 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--R 123 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--c
Confidence 33444444457899999999999999999999987 99999999999999988875444 5688999999988654 6
Q ss_pred ccEEEecc
Q 004164 135 FDVILDKG 142 (771)
Q Consensus 135 FDlVi~~~ 142 (771)
||.++++-
T Consensus 124 fd~cVsNl 131 (315)
T KOG0820|consen 124 FDGCVSNL 131 (315)
T ss_pred cceeeccC
Confidence 99999754
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00019 Score=75.47 Aligned_cols=108 Identities=20% Similarity=0.237 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCC-CccEEE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDE-TFDVIL 139 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~-sFDlVi 139 (771)
...+||-||.|.|..+.++.+.. ..+|+.||+++.+++.+++-+.. ..++++++..|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999999885 57999999999999977654321 247899999999764 22223 899999
Q ss_pred eccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
...+-.. .... .-.-..+++.+++.|+|||++++-.
T Consensus 156 ~D~~dp~-~~~~--~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPD-GPAP--NLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTT-SCGG--GGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCC-CCcc--cccCHHHHHHHHhhcCCCcEEEEEc
Confidence 6332211 1000 0013588999999999999999876
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00014 Score=72.95 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=78.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...++|++=.|+|++..-...+. ..+|+.||.|+..+.+.++... +...++++++.+|+..++.+...
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------- 110 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------- 110 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH----------
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc----------
Confidence 34789999999999987555553 3499999999999999999872 22245799999999999987631
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc--cHHHHHHHH--HccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV--EGSFLLTVK--DALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~--~~~fl~~~~--~~L~~~Gilv~Nl~~~ 692 (771)
.+.+||+|++|- |-..- -.+.++.+. ..|+++|++++-...+
T Consensus 111 -------------------~~~~fDiIflDP------------PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 111 -------------------KGEKFDIIFLDP------------PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -------------------CTS-EEEEEE--------------STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred -------------------cCCCceEEEECC------------CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 147899999962 22222 266777776 6889999999876544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00037 Score=72.25 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=93.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEc----chHHHHHhhccCCcccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHIT----DGIKFVREMKSSSATDE 615 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~----Dg~~~l~~~~~~~~~~~ 615 (771)
++..+|.+|+|.|+++.++.+.+|..+|++||.+++.+.+|.+.. .+....++.|+.- |...- .
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~---~-------- 216 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE---H-------- 216 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc---c--------
Confidence 344799999999999999999999999999999999999998876 2223567777733 22111 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeC---CCC-----CCCCCCCcCCcCcc--------cHHHHHHHHHcc
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV---DSP-----DSSSGMTCPAADFV--------EGSFLLTVKDAL 679 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~---~s~-----d~~~g~s~pp~~f~--------~~~fl~~~~~~L 679 (771)
....+++|+|+..- .+. +++.+..-|+.++. -..++..+.+.|
T Consensus 217 ---------------------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L 275 (328)
T KOG2904|consen 217 ---------------------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML 275 (328)
T ss_pred ---------------------ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc
Confidence 01236788888621 000 11222222333222 235677888999
Q ss_pred CCCcEEEEEeccC--ChhHHHH-HHHHHHHhccceEEeeecCCccEEEEE
Q 004164 680 SEQGLFIVNLVSR--SQATKDM-VISRMKMVFNHLFCLQLEEDVNLVLFG 726 (771)
Q Consensus 680 ~~~Gilv~Nl~~~--~~~~~~~-v~~~l~~vF~~v~~~~~~~~~N~Vl~a 726 (771)
.|||.+.+++..+ ++..... +.......|..+....-..+.+.++..
T Consensus 276 q~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i 325 (328)
T KOG2904|consen 276 QPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVII 325 (328)
T ss_pred ccCCeEEEEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEE
Confidence 9999999999844 4443322 223333334333333323344555544
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00035 Score=75.99 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=49.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeeEEE-cchHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHI-TDGIK 602 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~~r~~v~i-~Dg~~ 602 (771)
+...++|+||+|+|++...|....+..+++++||||..++.|++..... ..++++++. .|.-.
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~ 178 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA 178 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh
Confidence 4668999999999988777777777889999999999999999988542 245788865 34333
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00013 Score=73.27 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
++.++|+||+|.|--+.||.... ..|++||+++.-++.+++.-.- ++-.++....|-.++ .
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~-~~l~i~~~~~Dl~~~----~------------ 90 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEE-EGLDIRTRVADLNDF----D------------ 90 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHH-TT-TEEEEE-BGCCB----S------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhh-cCceeEEEEecchhc----c------------
Confidence 46799999999999999999985 6899999999988877655311 122377777774332 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
-...||+|+..+.- +-++++.+ +..++.+++.++|||++++...
T Consensus 91 ------------------~~~~yD~I~st~v~------~fL~~~~~--~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 91 ------------------FPEEYDFIVSTVVF------MFLQRELR--PQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -------------------TTTEEEEEEESSG------GGS-GGGH--HHHHHHHHHTEEEEEEEEEEEE
T ss_pred ------------------ccCCcCEEEEEEEe------ccCCHHHH--HHHHHHHHhhcCCcEEEEEEEe
Confidence 12579999874311 22234433 7789999999999999888653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00057 Score=68.44 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=95.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+..+||.||.|-|....|+++.-|. +-..+|..|.|++--|++- -.+.++|.+..|==.+.+.++.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~g-w~ek~nViil~g~WeDvl~~L~----------- 166 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWG-WREKENVIILEGRWEDVLNTLP----------- 166 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcc-cccccceEEEecchHhhhcccc-----------
Confidence 46789999999999999999999776 7788999999999988884 3355666666654445555554
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE-EEeccCChhHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI-VNLVSRSQATKD 698 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv-~Nl~~~~~~~~~ 698 (771)
++.||=|+.|.++.-+. -..+|.+.+-++|+|+|+|. +|..+-+.....
T Consensus 167 --------------------d~~FDGI~yDTy~e~yE----------dl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~ 216 (271)
T KOG1709|consen 167 --------------------DKHFDGIYYDTYSELYE----------DLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFY 216 (271)
T ss_pred --------------------ccCcceeEeechhhHHH----------HHHHHHHHHhhhcCCCceEEEecCcccchhhhh
Confidence 35699999999876321 13788999999999999998 587776655433
Q ss_pred HHHHHHHHhccceEEeeec
Q 004164 699 MVISRMKMVFNHLFCLQLE 717 (771)
Q Consensus 699 ~v~~~l~~vF~~v~~~~~~ 717 (771)
.++..+..+++.
T Consensus 217 -------~vy~~lV~iev~ 228 (271)
T KOG1709|consen 217 -------DVYKILVMIEVA 228 (271)
T ss_pred -------hhhheeEEEEee
Confidence 355555555543
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00027 Score=76.78 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC-C--CCcEEEE-eecCCCC----CCCCCccEE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-R--SDMRWRV-MDMTSMQ----FMDETFDVI 138 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~-~--~~i~~~~-~D~~~l~----~~~~sFDlV 138 (771)
+..++||||||+|.+...|+.. ...+++|+|+++.+++.+++..... + .++.+.. .|..++. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4689999999999888777665 2348999999999999887665444 2 3566643 3333321 246789999
Q ss_pred Eecccccccc
Q 004164 139 LDKGGLDALM 148 (771)
Q Consensus 139 i~~~~l~~l~ 148 (771)
+++-.++.-.
T Consensus 194 vcNPPf~~s~ 203 (321)
T PRK11727 194 LCNPPFHASA 203 (321)
T ss_pred EeCCCCcCcc
Confidence 9998877643
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.7e-05 Score=69.75 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=48.3
Q ss_pred EEEeccccHHHHHHHHhCCCC---cEEEEEcCH---HHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 546 VVIGLGAGLLPMFLHECMPFV---GIEAVELDL---TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 546 LviGlG~G~l~~~L~~~~p~~---~i~~VEiD~---~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
|.||...|..+.++...++.. ++.+||.++ ..-++.++ .++ .++++++.+|..+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~--~~~~~~~~g~s~~~l~~~~----------- 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL--SDRVEFIQGDSPDFLPSLP----------- 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHH-----------
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC--CCeEEEEEcCcHHHHHHcC-----------
Confidence 578988887777777665543 699999999 55555554 333 4679999999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||+|++|.+.... .....|+.+..+|+|||++++.
T Consensus 67 --------------------~~~~dli~iDg~H~~~-----------~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 67 --------------------DGPIDLIFIDGDHSYE-----------AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --------------------H--EEEEEEES---HH-----------HHHHHHHHHGGGEEEEEEEEEE
T ss_pred --------------------CCCEEEEEECCCCCHH-----------HHHHHHHHHHHHcCCCeEEEEe
Confidence 2679999999854321 2366789999999999999975
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.5e-05 Score=77.16 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-----CCcEEEEeecCCC--CCCCCCccEEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-----SDMRWRVMDMTSM--QFMDETFDVIL 139 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-----~~i~~~~~D~~~l--~~~~~sFDlVi 139 (771)
+.+.+|||...|-|..+...+++|..+|+.++-++.+++.+ ..| ... ..++.+.+|+.+. .|+|++||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa-~lN-PwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA-KLN-PWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee-ccC-CCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 46899999999999999999999988999999999999744 332 111 3578999999886 68999999999
Q ss_pred eccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
-.-.=..+.. .---+.+..+++|+|||||+++--.
T Consensus 211 HDPPRfS~Ag----eLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 211 HDPPRFSLAG----ELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred eCCCccchhh----hHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 3211111110 0014688999999999999986543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=3.1e-05 Score=78.03 Aligned_cols=102 Identities=19% Similarity=0.341 Sum_probs=79.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
+.-.++|.||||+|.+.--|+..- .+++.|||+..|++.|.+.-.+ + ++.++|+..|++...
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~Y---D--~L~~Aea~~Fl~~~~----------- 185 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLY---D--TLYVAEAVLFLEDLT----------- 185 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccch---H--HHHHHHHHHHhhhcc-----------
Confidence 446789999999999988888886 4899999999999999887554 2 567789999988654
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
..+||+|.. |+.. +.+.+ +.++-.+...|+|||+|++.+-
T Consensus 186 --------------------~er~DLi~AaDVl~--YlG~L---------e~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 186 --------------------QERFDLIVAADVLP--YLGAL---------EGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred --------------------CCcccchhhhhHHH--hhcch---------hhHHHHHHHhcCCCceEEEEec
Confidence 478999974 3311 11112 6788899999999999998764
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0006 Score=73.53 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~ 603 (771)
...+||.||.|.|.++..|.... .+|++||+|+.+++.+++.+... ..++++++.+|++++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 34689999999999999998864 47999999999999999987422 246899999999885
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00032 Score=77.99 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=81.7
Q ss_pred CCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
+.+||++..|.|..+.-.....+ ..+|+++|+||..++.+++...+..-+.++++.+|+..++....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~------------ 112 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRN------------ 112 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhC------------
Confidence 36899999999988877666643 35899999999999999998855333468999999999987643
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
.+||+|++|-+.. | .+|+..+.+.++++|++.+-
T Consensus 113 --------------------~~fDvIdlDPfGs--------~------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 113 --------------------RKFHVIDIDPFGT--------P------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --------------------CCCCEEEeCCCCC--------c------HHHHHHHHHhcccCCEEEEE
Confidence 5699999976432 1 47999999999999999975
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00046 Score=75.06 Aligned_cols=59 Identities=20% Similarity=0.088 Sum_probs=46.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-----CCCCeeEEEcchH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----QDKSLKVHITDGI 601 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-----~~~r~~v~i~Dg~ 601 (771)
...+||+||+|+|.++..|... ..+|++||+++.|++.|++.+.-. ...+++++.+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3568999999999999888876 358999999999999999986321 1245778888853
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0005 Score=67.99 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=69.0
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+.|+++|+|+|.|..-..-..+. +|.+||+||+.+++|++.-+= ...++++.++|..++
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~------------------ 105 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF------------------ 105 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc------------------
Confidence 356999999999998766666554 999999999999999988642 245799999998887
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHcc
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL 679 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L 679 (771)
..++|.+|.+ .+. |.- -.+ -+.+||+.+.+.-
T Consensus 106 ------------------~~~~dtvimN--PPF---G~~--~rh-aDr~Fl~~Ale~s 137 (198)
T COG2263 106 ------------------RGKFDTVIMN--PPF---GSQ--RRH-ADRPFLLKALEIS 137 (198)
T ss_pred ------------------CCccceEEEC--CCC---ccc--ccc-CCHHHHHHHHHhh
Confidence 2568888883 222 211 223 6788998887764
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00064 Score=72.70 Aligned_cols=126 Identities=13% Similarity=0.008 Sum_probs=80.9
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE--EEeec
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRW--RVMDM 125 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~--~~~D~ 125 (771)
|..+...|.++-...+.....+|||+|||+|..+..+.+. ...+++++|.|+.|++.++.... ..+.... ...+.
T Consensus 15 YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~-~~~~~~~~~~~~~~ 93 (274)
T PF09243_consen 15 YAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR-AGPNNRNAEWRRVL 93 (274)
T ss_pred HHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh-cccccccchhhhhh
Confidence 4555555555543322235579999999999877655543 45689999999999986655443 3322111 11111
Q ss_pred CCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 126 ~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.....+-...|+|++.++|.-+.+.. +..+++.+.+.+.+ .+++++.+.+.
T Consensus 94 ~~~~~~~~~~DLvi~s~~L~EL~~~~-----r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 94 YRDFLPFPPDDLVIASYVLNELPSAA-----RAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hcccccCCCCcEEEEehhhhcCCchH-----HHHHHHHHHHhccC--cEEEEcCCChH
Confidence 11111112349999999999988722 67888888777766 99999988654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0009 Score=73.46 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=88.5
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC---------------------------------C-------eE
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------H-------GI 94 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~---------------------------------~-------~V 94 (771)
..++.+... .++..++|.-||+|.+..+.+-.+. . .+
T Consensus 181 aAil~lagw---~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 181 AAILLLAGW---KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHcCC---CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 344444443 4567999999999999988776531 1 37
Q ss_pred EEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccccCcc-cchHHHHHHHHHHHHccccC
Q 004164 95 TNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRLLKSG 171 (771)
Q Consensus 95 ~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~-~~~~~~~~~l~~i~rvLkpG 171 (771)
+|+|+++.+|+.|+..+...+ ..|+|.++|+..++-+-+.+|+||++-.-.--...+ ....+...+.+.+++.++..
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 799999999998877665555 569999999999864447899999876544322222 11235677777888888888
Q ss_pred eEEEEEEcC
Q 004164 172 GKFVCLTLA 180 (771)
Q Consensus 172 G~~ii~~~~ 180 (771)
+++++++..
T Consensus 338 s~~v~tt~e 346 (381)
T COG0116 338 SRYVFTTSE 346 (381)
T ss_pred ceEEEEccH
Confidence 899888743
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0006 Score=75.91 Aligned_cols=113 Identities=11% Similarity=0.137 Sum_probs=76.5
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 622 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 622 (771)
.++|++++|.|+++..|.... .+|++||+++.+++.|++......-++++++.+|+.++++........
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~--------- 276 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREF--------- 276 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccc---------
Confidence 469999999999999888876 389999999999999999863322247999999999998764310000
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 623 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.... .......+||+||+|-- ..| +..+.++.+.+ +++++.+-.
T Consensus 277 -------~~~~-~~~~~~~~~D~v~lDPP----R~G--------~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 277 -------NRLK-GIDLKSYNFSTIFVDPP----RAG--------LDDETLKLVQA---YERILYISC 320 (362)
T ss_pred -------cccc-cccccCCCCCEEEECCC----CCC--------CcHHHHHHHHc---cCCEEEEEe
Confidence 0000 00000236999999631 123 34777777765 678777654
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0007 Score=75.05 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=53.1
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHh
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE 606 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~ 606 (771)
.++|++|+|.|.++..|.... .+|++||+++.+++.|++......-++++++.+|+.+++..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 469999999999999999886 38999999999999999987432224699999999999865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00027 Score=75.88 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=65.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (771)
-+...+.+.+.. .++..+||.+||+|..+..+++.. .+.|+|+|.++.+++.+++++.. ..+++++++|+.++.
T Consensus 6 Vll~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 6 VLLDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK 81 (296)
T ss_pred ccHHHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH
Confidence 343445555543 578899999999999999999883 36899999999999999887755 567999999988763
Q ss_pred --CCC--CCccEEEec
Q 004164 130 --FMD--ETFDVILDK 141 (771)
Q Consensus 130 --~~~--~sFDlVi~~ 141 (771)
.++ .++|.|+..
T Consensus 82 ~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 82 EVLAEGLGKVDGILLD 97 (296)
T ss_pred HHHHcCCCccCEEEEC
Confidence 111 268887753
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.001 Score=70.64 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=78.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (771)
.+.+...+.+.+.. .++..|||+|+|+|.+|..|.+.+ .+++++|+++.+++.++++.. ..++++++..|+.+++
T Consensus 15 ~~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccc
Confidence 45667777777764 578999999999999999999998 699999999999988877664 5678999999999987
Q ss_pred CCC---CCccEEEeccccccccCcccchHHHHHHHHHHHHcccc
Q 004164 130 FMD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (771)
Q Consensus 130 ~~~---~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkp 170 (771)
..+ .....|+++-.. ++ -..++.++...-+.
T Consensus 90 ~~~~~~~~~~~vv~NlPy-~i---------s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPY-NI---------SSPILRKLLELYRF 123 (262)
T ss_dssp GGGHCSSSEEEEEEEETG-TG---------HHHHHHHHHHHGGG
T ss_pred cHHhhcCCceEEEEEecc-cc---------hHHHHHHHhhcccc
Confidence 554 345566665433 22 22556666653343
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00044 Score=71.51 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=47.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITD 599 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~D 599 (771)
...+||+||+|+|.++..|.... .+++++|+++.+++.|++.+.-. ..+++.++.+|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 45689999999999988888765 46999999999999999987422 22578999998
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00032 Score=70.33 Aligned_cols=97 Identities=19% Similarity=0.103 Sum_probs=75.3
Q ss_pred eEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEecccccccc
Q 004164 71 QILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~ 148 (771)
+++|||+|.|.-+..|+=. +..+++.+|....-+..++.-....+ .++++++..+++ +....+||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcC---
Confidence 8999999999988888765 44589999999987776654443333 579999999998 44568999999865443
Q ss_pred CcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 149 ~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+..++.-+.++|++||++++.--
T Consensus 127 --------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 127 --------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp --------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred --------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 45889999999999999988763
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0012 Score=63.79 Aligned_cols=111 Identities=11% Similarity=0.146 Sum_probs=81.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
.+...||.+|-|+|.++..+..+ .+...++++|.+++-+..-.+.|. .++++.||++.-=....
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~---------- 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLG---------- 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHHHHHh----------
Confidence 44568999999999998866655 466799999999999999888873 35699999987532332
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
+..+..||.||.-+ +...+ | -=.+-+.|+.+..+|..||.++.=-.+
T Consensus 112 ------------------e~~gq~~D~viS~l----Pll~~--P--~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 112 ------------------EHKGQFFDSVISGL----PLLNF--P--MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ------------------hcCCCeeeeEEecc----ccccC--c--HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 12357899999833 11111 1 113678999999999999999865554
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0014 Score=66.69 Aligned_cols=126 Identities=20% Similarity=0.305 Sum_probs=88.0
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~ 122 (771)
.|......+...+..-+.....+++.+||-+|..+|....++.+- | -+.|+++++|+.....+..- ++.++|+--+.
T Consensus 50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~l-a~~R~NIiPIl 128 (229)
T PF01269_consen 50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNL-AKKRPNIIPIL 128 (229)
T ss_dssp EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH-HHHSTTEEEEE
T ss_pred ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHH-hccCCceeeee
Confidence 477777777777777766556688999999999999999999987 5 46899999999888777544 35678999999
Q ss_pred eecCCCC---CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 123 MDMTSMQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 123 ~D~~~l~---~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.|+.... .--+..|+|+..- ..++ ..+-+..+....||+||.+++.--+
T Consensus 129 ~DAr~P~~Y~~lv~~VDvI~~DV-----aQp~----Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 129 EDARHPEKYRMLVEMVDVIFQDV-----AQPD----QARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp S-TTSGGGGTTTS--EEEEEEE------SSTT----HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccCCChHHhhcccccccEEEecC-----CChH----HHHHHHHHHHhhccCCcEEEEEEec
Confidence 9998631 1235899999532 1122 2668888999999999999886543
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00073 Score=74.89 Aligned_cols=127 Identities=14% Similarity=0.222 Sum_probs=75.0
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--- 129 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--- 129 (771)
...+.+++.. .++ +|||+-||.|.++..|++... +|+|||+++.+++.|++.+...+ .+++|+++++.++.
T Consensus 186 ~~~~~~~l~~---~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 186 YEQALEWLDL---SKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHCTT----TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHH
T ss_pred HHHHHHHhhc---CCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHH
Confidence 3344555553 333 899999999999999988755 99999999999998877665544 68999998876531
Q ss_pred -------------CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCc
Q 004164 130 -------------FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 196 (771)
Q Consensus 130 -------------~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w 196 (771)
.....+|+|+.. +|-.|. -+.++..+.+ + .+++-++..+..+...+.. +..+|
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vilD-------PPR~G~--~~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~~-L~~~y 326 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVILD-------PPRAGL--DEKVIELIKK---L-KRIVYVSCNPATLARDLKI-LKEGY 326 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE----------TT-S--CHHHHHHHHH---S-SEEEEEES-HHHHHHHHHH-HHCCE
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEEc-------CCCCCc--hHHHHHHHhc---C-CeEEEEECCHHHHHHHHHH-HhhcC
Confidence 112357888731 111111 1133444433 2 3677777665555555443 33467
Q ss_pred EEE
Q 004164 197 KMS 199 (771)
Q Consensus 197 ~~~ 199 (771)
.+.
T Consensus 327 ~~~ 329 (352)
T PF05958_consen 327 KLE 329 (352)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00026 Score=74.17 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=53.0
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...||.||-|.|+|+..|.+.. .+|++||||+.++.+-++.+. ..++++|+.+|++++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~ 88 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKF 88 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcC
Confidence 5789999999999999999997 469999999999999999997 357899999999987
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0027 Score=63.30 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=86.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (771)
..+++.+..++... --.+.++||+=+|+|.++.+.+.+|...++.||.+..++...++.....+ .+..++.+|+...
T Consensus 27 drVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~ 105 (187)
T COG0742 27 DRVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA 105 (187)
T ss_pred hHHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH
Confidence 34555666666420 03689999999999999999999999999999999999987766655444 6788888888843
Q ss_pred --CCCC-CCccEEEeccccccccCcccchHHH--HHHHHH--HHHccccCeEEEEEEcCc
Q 004164 129 --QFMD-ETFDVILDKGGLDALMEPELGHKLG--NQYLSE--VKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 129 --~~~~-~sFDlVi~~~~l~~l~~~~~~~~~~--~~~l~~--i~rvLkpGG~~ii~~~~~ 181 (771)
.... +.||+|+.--.++. ... ...+.. -..+|+|+|.++|-.-..
T Consensus 106 L~~~~~~~~FDlVflDPPy~~--------~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 106 LKQLGTREPFDLVFLDPPYAK--------GLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHhcCCCCcccEEEeCCCCcc--------chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 1222 25999996544431 112 222333 457899999988877553
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00095 Score=72.76 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=95.0
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEe
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~ 123 (771)
|......-+..+.+... ++.+|||+=||-|.++..++..|...|+++|++|.+++.+++....++ ..+..+++
T Consensus 171 Fsprl~~ER~Rva~~v~-----~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~g 245 (341)
T COG2520 171 FSPRLSTERARVAELVK-----EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILG 245 (341)
T ss_pred ECCCchHHHHHHHhhhc-----CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEec
Confidence 33333344445666653 689999999999999999999988669999999999997766554433 34889999
Q ss_pred ecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
|.......-+.||-|++...-.+ ..++....+.+++||.+.+-++.++..
T Consensus 246 D~rev~~~~~~aDrIim~~p~~a-----------~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 246 DAREVAPELGVADRIIMGLPKSA-----------HEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred cHHHhhhccccCCEEEeCCCCcc-----------hhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 99998765588999997654432 377888889999999999988876543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00041 Score=69.18 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=52.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
+...|||+||+|.|.|..+|.+. .+++..+||||++-+..|.+. .+.|+++|.-+-+....
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~ 72 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFP 72 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCC
Confidence 34589999999999999999997 578999999999988887655 36899999999887765
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=79.76 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=76.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-------CC-----CCcEEEEEcCHH---HHHHH-----------Hhh----c----
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-------MP-----FVGIEAVELDLT---MLNLA-----------EDY----F---- 585 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-------~p-----~~~i~~VEiD~~---v~~vA-----------~~~----F---- 585 (771)
....+|+++|.|+|.-...+... -| .+++..||.+|. -+.-+ ++. -
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 44578999999999432222221 13 369999998762 11111 111 0
Q ss_pred CCC----CCC--CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC
Q 004164 586 GFT----QDK--SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 659 (771)
Q Consensus 586 g~~----~~~--r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~ 659 (771)
|+. ++. ++++++||+.+.+.+.. .++|+|++|.|++..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~--------------------------------~~~d~~~lD~FsP~~---- 179 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLD--------------------------------ARADAWFLDGFAPAK---- 179 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhcc--------------------------------ccccEEEeCCCCCcc----
Confidence 210 122 56799999999998864 469999999999853
Q ss_pred CcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 660 TCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 660 s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
.+++++.++|..++++++|+|+|+
T Consensus 180 ---np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 180 ---NPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ---ChhhccHHHHHHHHHHhCCCCEEE
Confidence 688999999999999999999999
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00036 Score=70.91 Aligned_cols=106 Identities=24% Similarity=0.357 Sum_probs=68.4
Q ss_pred CCCCcEEEEeccccHHHH-HHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchH-HHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGAGLLPM-FLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI-KFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~-~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~-~~l~~~~~~~~~~~~~ 617 (771)
....++|..|.|-|-.+. +|...+ -+|+.||..+..++.|+++++- ...++.-+..=|+ +|..
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~-~~~~v~~~~~~gLQ~f~P------------ 118 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGK-DNPRVGEFYCVGLQDFTP------------ 118 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCC-GGCCEEEEEES-GGG---------------
T ss_pred CCcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcc-cCCCcceEEecCHhhccC------------
Confidence 346789999999998776 444444 5899999999999999999974 2344444444444 3321
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEE--EeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIV--NLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~--Nl~~~ 692 (771)
+..+||+|-+=-. ..+|.+ .+||+.|+..|+|+|++++ |+...
T Consensus 119 ---------------------~~~~YDlIW~QW~-----------lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~ 166 (218)
T PF05891_consen 119 ---------------------EEGKYDLIWIQWC-----------LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS 166 (218)
T ss_dssp ----------------------TT-EEEEEEES------------GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred ---------------------CCCcEeEEEehHh-----------hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC
Confidence 1368999988221 223333 4689999999999999997 76544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=69.44 Aligned_cols=131 Identities=17% Similarity=0.273 Sum_probs=76.1
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHH-Hhc-CC-CeEEEEcCCHHHHHHHHHHhhc---CCC
Q 004164 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL-YDA-GF-HGITNVDFSKVVISDMLRRNVR---DRS 116 (771)
Q Consensus 43 ~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~L-a~~-g~-~~V~~vDiS~~~i~~~~~~~~~---~~~ 116 (771)
.|.+|..|..+.+.=...+.........+|+=||||.=-+|..+ ++. +. ..|+++|+++.+++.+++-... ...
T Consensus 95 ~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~ 174 (276)
T PF03059_consen 95 SFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK 174 (276)
T ss_dssp TSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S
T ss_pred cCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC
Confidence 45566767666654444444311112359999999988777444 433 32 4799999999999977655441 236
Q ss_pred CcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 117 DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 117 ~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+++|+++|..+.+.+-..||+|+.......-..+ -.+++.++.+.++||..+++-+.
T Consensus 175 ~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~------K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 175 RMSFITADVLDVTYDLKEYDVVFLAALVGMDAEP------KEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp SEEEEES-GGGG-GG----SEEEE-TT-S----S------HHHHHHHHHHHS-TTSEEEEEE-
T ss_pred CeEEEecchhccccccccCCEEEEhhhcccccch------HHHHHHHHHhhCCCCcEEEEecc
Confidence 8999999998876656789999976555422112 46999999999999999888753
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=61.48 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=64.0
Q ss_pred CCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccH
Q 004164 590 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 669 (771)
Q Consensus 590 ~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~ 669 (771)
.-++++++||+.+.++++. ..+|+|+.|.+++.. .+++.+.
T Consensus 30 ~v~L~L~~gDa~~~l~~l~--------------------------------~~~Da~ylDgFsP~~-------nPelWs~ 70 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLD--------------------------------ARFDAWYLDGFSPAK-------NPELWSE 70 (124)
T ss_dssp TEEEEEEES-HHHHHHHB---------------------------------T-EEEEEE-SS-TTT-------SGGGSSH
T ss_pred CEEEEEEEcHHHHHHHhCc--------------------------------ccCCEEEecCCCCcC-------CcccCCH
Confidence 3468999999999999975 679999999999854 6789999
Q ss_pred HHHHHHHHccCCCcEEEEEeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEec
Q 004164 670 SFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 728 (771)
Q Consensus 670 ~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 728 (771)
++|+.+.++++++|+|+ ..+.... |-..|.++==.|...+-...-.+.+.|.+
T Consensus 71 e~~~~l~~~~~~~~~l~--Tys~a~~----Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLA--TYSSAGA----VRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHHHHEEEEEEEE--ES--BHH----HHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred HHHHHHHHHhCCCcEEE--EeechHH----HHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 99999999999999988 3333333 44455555334555554344556666653
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0012 Score=64.66 Aligned_cols=130 Identities=19% Similarity=0.339 Sum_probs=80.5
Q ss_pred CCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||.||+|-|.+..-|++. |+. .+++||.++..+++|+.-- ++ ++.+++.+.|-.+= +
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~DI~~~--~---------- 131 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLDITDP--D---------- 131 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCC--CcceeEEEeeccCC--c----------
Confidence 3449999999999886666654 443 6999999999999986543 44 34588887776542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEE----EeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILI----IDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi----~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....+||+|+ .|+-+--+.. |...+ .-++..+.+.|+|+|+|++--..-
T Consensus 132 ---------------------~~~~qfdlvlDKGT~DAisLs~d~----~~~r~--~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 132 ---------------------FLSGQFDLVLDKGTLDAISLSPDG----PVGRL--VVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred ---------------------ccccceeEEeecCceeeeecCCCC----cccce--eeehhhHhhccCCCcEEEEEecCc
Confidence 1125688776 2321110000 11111 457889999999999999865332
Q ss_pred ChhHHHHHHHHHHHh-ccceEEee
Q 004164 693 SQATKDMVISRMKMV-FNHLFCLQ 715 (771)
Q Consensus 693 ~~~~~~~v~~~l~~v-F~~v~~~~ 715 (771)
. .+.+++.+..- |..++.++
T Consensus 185 T---~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 185 T---KDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred c---HHHHHHHHhcCCeEEEEeec
Confidence 2 33445555444 54444433
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0015 Score=66.91 Aligned_cols=98 Identities=17% Similarity=0.086 Sum_probs=73.7
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCC-ccEEEeccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDET-FDVILDKGGLD 145 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~s-FDlVi~~~~l~ 145 (771)
+.+++|||.|.|.=+..|+-. ...++|-+|....-+...+.-..+.+ +|++++++-++++.-. .. ||+|.+..+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-KKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-cccCcEEEeehccc
Confidence 589999999999999888733 33469999998877766654443434 6799999999987532 22 99999865433
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+..++.-+..++++||.++..-
T Consensus 147 -----------L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 147 -----------LNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred -----------hHHHHHHHHHhcccCCcchhhh
Confidence 3478888999999999976544
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.002 Score=65.61 Aligned_cols=140 Identities=20% Similarity=0.248 Sum_probs=95.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCH----HHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDL----TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~----~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
....+||-||...|+..+++..... .-.|-+||..| .++++|++.- ++--+++||..--+ ..
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~------NIiPIl~DAr~P~~-Y~------ 138 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP------NIIPILEDARHPEK-YR------ 138 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST------TEEEEES-TTSGGG-GT------
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC------ceeeeeccCCChHH-hh------
Confidence 3457999999999999999998775 66999999999 7788888774 46668899984311 11
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC--
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR-- 692 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~-- 692 (771)
.--..+|+|+.|+--++. ..-+..+++..|++||.+++-+-.+
T Consensus 139 -----------------------~lv~~VDvI~~DVaQp~Q------------a~I~~~Na~~fLk~gG~~~i~iKa~si 183 (229)
T PF01269_consen 139 -----------------------MLVEMVDVIFQDVAQPDQ------------ARIAALNARHFLKPGGHLIISIKARSI 183 (229)
T ss_dssp -----------------------TTS--EEEEEEE-SSTTH------------HHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred -----------------------cccccccEEEecCCChHH------------HHHHHHHHHhhccCCcEEEEEEecCcc
Confidence 012579999999976643 2668889999999999888765332
Q ss_pred -----ChhHHHHHHHHHHHh-ccce--EEeeecCCccEEEEEe
Q 004164 693 -----SQATKDMVISRMKMV-FNHL--FCLQLEEDVNLVLFGL 727 (771)
Q Consensus 693 -----~~~~~~~v~~~l~~v-F~~v--~~~~~~~~~N~Vl~a~ 727 (771)
..+.....+++|++. |.-+ ..++.-+..+.+++|.
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEE
Confidence 234456668888874 7643 3444334556666664
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00077 Score=75.02 Aligned_cols=99 Identities=9% Similarity=0.091 Sum_probs=75.8
Q ss_pred CCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCCccEEEecccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDlVi~~~~l 144 (771)
+.+|||+.||+|..+..++.. |...|+++|+++.+++.+++...... .++.+.+.|+..+- .....||+|...- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999887 66799999999999998766554333 35788888887652 1235799998532 1
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..+ ..++..+.+.+++||.+.++.
T Consensus 124 ---Gs~-------~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GTP-------APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CCc-------HHHHHHHHHhcccCCEEEEEe
Confidence 222 278899999999999988764
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00092 Score=66.93 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=74.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC--CCcEEEEEcCHHHHHHHHhhcCC----------CCCCCeeEEEcchHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP--FVGIEAVELDLTMLNLAEDYFGF----------TQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p--~~~i~~VEiD~~v~~vA~~~Fg~----------~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
...+.|.||.|+|.|+........ +...++||.-|++++.+++.... -+..++.+++|||+.--.+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-- 159 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-- 159 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc--
Confidence 456899999999998776665443 33449999999999999988622 1346899999999875222
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||.|.+-+..+ +..+.+-+.|+++|-+++-
T Consensus 160 -------------------------------~a~YDaIhvGAaa~----------------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 -------------------------------QAPYDAIHVGAAAS----------------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred -------------------------------cCCcceEEEccCcc----------------ccHHHHHHhhccCCeEEEe
Confidence 36799999954333 3346677789999988876
Q ss_pred ec
Q 004164 689 LV 690 (771)
Q Consensus 689 l~ 690 (771)
+.
T Consensus 193 ~~ 194 (237)
T KOG1661|consen 193 VG 194 (237)
T ss_pred ec
Confidence 64
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00049 Score=68.72 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=86.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcch-----HHHHHhhccCCcc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG-----IKFVREMKSSSAT 613 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg-----~~~l~~~~~~~~~ 613 (771)
+...+||+||.+.|+.+.++.++. +..+|.+||+-+. . +-+.+..+.+|. .+.+.+..
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~-----~~~~~~~i~~d~~~~~~~~~i~~~~----- 85 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------D-----PLQNVSFIQGDITNPENIKDIRKLL----- 85 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------G-----S-TTEEBTTGGGEEEEHSHHGGGSH-----
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc------c-----cccceeeeecccchhhHHHhhhhhc-----
Confidence 356899999999999999999987 5679999999988 1 112233333443 23333321
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC---CcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 614 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP---AADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p---p~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.....++|+|+.|+-..- .|.... ...-+....+..+...|++||.||+-+.
T Consensus 86 -----------------------~~~~~~~dlv~~D~~~~~--~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 86 -----------------------PESGEKFDLVLSDMAPNV--SGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp -----------------------GTTTCSESEEEE---------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred -----------------------cccccCcceeccccccCC--CCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 011268999999982221 111000 0111223344566677999999999887
Q ss_pred cCChhHHHHHHHHHHHhccceEEeeecC---CccEEEE
Q 004164 691 SRSQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLF 725 (771)
Q Consensus 691 ~~~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~Vl~ 725 (771)
..... . .++..++..|..+..++... ..|+.++
T Consensus 141 ~~~~~-~-~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 141 KGPEI-E-ELIYLLKRCFSKVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp SSTTS-H-HHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred cCccH-H-HHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence 64443 3 78999999999998887643 3455443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00054 Score=73.21 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=51.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...+||+||+|+|.++..|....+ +|++||+|+.+++.+++.+. +++++++.+|+.++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~ 99 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKV 99 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcC
Confidence 446899999999999999999864 89999999999999998774 36899999999875
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0036 Score=69.46 Aligned_cols=115 Identities=22% Similarity=0.178 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcCC---CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCCccEE
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVI 138 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~g~---~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDlV 138 (771)
+.++.+|||+.++.|.=|.+++.... ..|+++|+++.-+..+.+...+.+ .++.....|...++ ...+.||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 37899999999999999999988732 246999999999988877776655 45678888876553 222359999
Q ss_pred Eec------cccccccCcccc---------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 139 LDK------GGLDALMEPELG---------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 139 i~~------~~l~~l~~~~~~---------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.- |++.--++.... .....++|....++|||||+++.+|.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 942 333211111100 123778999999999999999999877
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0032 Score=61.82 Aligned_cols=128 Identities=21% Similarity=0.312 Sum_probs=86.9
Q ss_pred CCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
+.=+|.||+|.|....||.... |+....+.||+|...+.-++---. +..++.+++.|-..-+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-n~~~~~~V~tdl~~~l~~-------------- 108 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-NRVHIDVVRTDLLSGLRN-------------- 108 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-cCCccceeehhHHhhhcc--------------
Confidence 4558999999999999999866 677889999999999886555432 345688898987776655
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCCC--C---CCCc-----CCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDSS--S---GMTC-----PAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~-~s~d~~--~---g~s~-----pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
++.|++++.- +-..+. . ++.. -...=+...+|..+..+|+|.|+|.++.
T Consensus 109 --------------------~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 109 --------------------ESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred --------------------CCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 4588888722 000000 0 0000 0001136778899999999999999998
Q ss_pred ccCChhHHHHHHHHHHH
Q 004164 690 VSRSQATKDMVISRMKM 706 (771)
Q Consensus 690 ~~~~~~~~~~v~~~l~~ 706 (771)
..++.. +.++..++.
T Consensus 169 ~~~N~p--~ei~k~l~~ 183 (209)
T KOG3191|consen 169 LRANKP--KEILKILEK 183 (209)
T ss_pred hhhcCH--HHHHHHHhh
Confidence 776654 345555543
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0044 Score=68.79 Aligned_cols=137 Identities=14% Similarity=0.198 Sum_probs=102.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
....+||++..+-|+=+..|.+.+++ ..|+++|+|+.=++..+... |+ ..+.++..|+..+.....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~~~~~~~~~------ 225 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDARRLAELLP------ 225 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEeccccccccccc------
Confidence 34578999999999888888888865 35699999998888877765 54 338899999987754432
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-Cc-------------CcccHHHHHHHHHccC
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AA-------------DFVEGSFLLTVKDALS 680 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p-p~-------------~f~~~~fl~~~~~~L~ 680 (771)
...+||.|++|+-.+. .|+.-- |. .=+..++|..+.+.|+
T Consensus 226 ------------------------~~~~fD~iLlDaPCSg--~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk 279 (355)
T COG0144 226 ------------------------GGEKFDRILLDAPCSG--TGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK 279 (355)
T ss_pred ------------------------ccCcCcEEEECCCCCC--CcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1236999999985542 222111 11 1246788999999999
Q ss_pred CCcEEEEEeccCChhHHHHHHHHHHHhccce
Q 004164 681 EQGLFIVNLVSRSQATKDMVISRMKMVFNHL 711 (771)
Q Consensus 681 ~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v 711 (771)
|||.||.-..+..++..+.++..+-+-.+.+
T Consensus 280 ~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~ 310 (355)
T COG0144 280 PGGVLVYSTCSLTPEENEEVVERFLERHPDF 310 (355)
T ss_pred CCCEEEEEccCCchhcCHHHHHHHHHhCCCc
Confidence 9999999999999998899998777666553
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0013 Score=68.02 Aligned_cols=135 Identities=9% Similarity=0.083 Sum_probs=87.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeeEEEcchHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~------------~~~r~~v~i~Dg~~~l~~~~ 608 (771)
...+||+.|+|-|.-..+|+.+. .+|++||+++.-++.+.+-.++. ...+++++++|.+++=.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-A 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc-c
Confidence 34699999999999999999874 58999999999999986643321 235788999988875110 0
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
....+||+|.- . +..|--+.=....+.+.+.++|+|||.+++-
T Consensus 120 -----------------------------~~~~~fD~VyD----r----a~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 120 -----------------------------NNLPVFDIWYD----R----GAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred -----------------------------cccCCcCeeee----e----hhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 01246898653 1 1112222234678999999999999977754
Q ss_pred eccCCh----hHHHHHHHHHHHhccceEEee
Q 004164 689 LVSRSQ----ATKDMVISRMKMVFNHLFCLQ 715 (771)
Q Consensus 689 l~~~~~----~~~~~v~~~l~~vF~~v~~~~ 715 (771)
....+. .....--..+++.|...+.+.
T Consensus 163 ~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 163 VMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226)
T ss_pred EEecCCCCCCCCCcCCHHHHHHhccCCceEE
Confidence 443221 111111356677776554443
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0027 Score=65.96 Aligned_cols=111 Identities=17% Similarity=0.285 Sum_probs=84.7
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (771)
..+..++.- .|+.+|||-|.|+|.++..+++. +-++++-.|+.+.-.+++++.+++.+ .++++..-|+....|
T Consensus 95 a~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 95 AMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 456666665 79999999999999999999987 34789999999998888888887655 689999999998765
Q ss_pred C--CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCe-EEEEEEcC
Q 004164 131 M--DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLA 180 (771)
Q Consensus 131 ~--~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG-~~ii~~~~ 180 (771)
. +..+|.|+. + ++.+- .++-....+||.+| ++++.+.+
T Consensus 172 ~~ks~~aDaVFL----D-lPaPw-------~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 172 LIKSLKADAVFL----D-LPAPW-------EAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred cccccccceEEE----c-CCChh-------hhhhhhHHHhhhcCceEEeccHH
Confidence 4 467888884 2 23332 44566666888765 66666655
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0042 Score=66.79 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=114.9
Q ss_pred CccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CC
Q 004164 512 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GF 587 (771)
Q Consensus 512 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~ 587 (771)
+++...=..+|+.+..|.. ....+||++..|-|+=+..+...++ ...|+++|+++.-+...+.++ |.
T Consensus 65 G~~~vQd~sS~l~~~~L~~---------~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~ 135 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALDP---------QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV 135 (283)
T ss_dssp TSEEEHHHHHHHHHHHHTT---------TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CcEEecccccccccccccc---------cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC
Confidence 3443333445555544432 3446799999999988778888876 569999999999988877765 54
Q ss_pred CCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc---
Q 004164 588 TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA--- 664 (771)
Q Consensus 588 ~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~--- 664 (771)
..+.++..|+..+..... ...||.|++|+-.+.. +-+.-.|.
T Consensus 136 ---~~v~~~~~D~~~~~~~~~-------------------------------~~~fd~VlvDaPCSg~-G~i~r~p~~~~ 180 (283)
T PF01189_consen 136 ---FNVIVINADARKLDPKKP-------------------------------ESKFDRVLVDAPCSGL-GTIRRNPDIKW 180 (283)
T ss_dssp ---SSEEEEESHHHHHHHHHH-------------------------------TTTEEEEEEECSCCCG-GGTTTCTTHHH
T ss_pred ---ceEEEEeecccccccccc-------------------------------ccccchhhcCCCccch-hhhhhccchhh
Confidence 568888899999876654 2469999999955532 11111121
Q ss_pred ----------CcccHHHHHHHHHcc----CCCcEEEEEeccCChhHHHHHHHHHHHhccceEEee
Q 004164 665 ----------DFVEGSFLLTVKDAL----SEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 715 (771)
Q Consensus 665 ----------~f~~~~fl~~~~~~L----~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~ 715 (771)
..+..+.|+.+.+.| +|||.+|.-..+-.++..+.+++.+-+.++.....+
T Consensus 181 ~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 181 RRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVP 245 (283)
T ss_dssp HE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEEC
T ss_pred cccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 134678899999999 999999999988888888889988877777655444
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0021 Score=69.15 Aligned_cols=65 Identities=12% Similarity=-0.019 Sum_probs=55.8
Q ss_pred CCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
...+++.++|+|.-+..+...+| ..+|.++|.||.+++.|++.+. +.++++++.+|..++.....
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~--~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK--PFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc--cCCcEEEEeCCHHHHHHHHH
Confidence 35799999999999999998886 6799999999999999998763 24689999999999876554
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0031 Score=62.91 Aligned_cols=124 Identities=20% Similarity=0.289 Sum_probs=95.4
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE
Q 004164 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (771)
Q Consensus 44 ~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~ 122 (771)
-+|......+...++.-++..+..++.+||-+|..+|....++.+- |.+.|++|++|+.+...+...+ ..++|+--+.
T Consensus 52 R~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a-~~R~Ni~PIL 130 (231)
T COG1889 52 REWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA-EKRPNIIPIL 130 (231)
T ss_pred eeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH-HhCCCceeee
Confidence 3587777788877877777667789999999999999999999987 6568999999999988776665 4568888899
Q ss_pred eecCCCC---CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 123 MDMTSMQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 123 ~D~~~l~---~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
.|+.... +--+..|+|+.- +..++ ..+-+..++...||+||+.++.
T Consensus 131 ~DA~~P~~Y~~~Ve~VDviy~D-----VAQp~----Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 131 EDARKPEKYRHLVEKVDVIYQD-----VAQPN----QAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cccCCcHHhhhhcccccEEEEe-----cCCch----HHHHHHHHHHHhcccCCeEEEE
Confidence 9987632 122458888842 12222 2667888999999999976664
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.002 Score=66.53 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=84.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC------------CCCCCeeEEEcchHHHHHhh
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF------------TQDKSLKVHITDGIKFVREM 607 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~------------~~~~r~~v~i~Dg~~~l~~~ 607 (771)
....+|||.|+|-|.-..+|..+. .+|++||+++..++.|.+.-+. ..+.+++++++|..++=...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 345689999999999999999873 5999999999999998544332 13467899999998852111
Q ss_pred ccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE-
Q 004164 608 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI- 686 (771)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv- 686 (771)
.++||+|.= -.....+ |+ =....+.+.++++|+|+|.++
T Consensus 114 --------------------------------~g~fD~iyD----r~~l~Al---pp-~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 114 --------------------------------VGKFDLIYD----RTFLCAL---PP-EMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp --------------------------------HHSEEEEEE----CSSTTTS----G-GGHHHHHHHHHHCEEEEEEEEE
T ss_pred --------------------------------cCCceEEEE----ecccccC---CH-HHHHHHHHHHHHHhCCCCcEEE
Confidence 247999963 1111222 22 367889999999999999833
Q ss_pred EEeccC----ChhHHHHHHHHHHHhccceEEe
Q 004164 687 VNLVSR----SQATKDMVISRMKMVFNHLFCL 714 (771)
Q Consensus 687 ~Nl~~~----~~~~~~~v~~~l~~vF~~v~~~ 714 (771)
+-+... ......---+.+.+.|..-+.+
T Consensus 154 i~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i 185 (218)
T PF05724_consen 154 ITLEYPQGEMEGPPFSVTEEEVRELFGPGFEI 185 (218)
T ss_dssp EEEES-CSCSSSSS----HHHHHHHHTTTEEE
T ss_pred EEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEE
Confidence 323211 1122222235666667654443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0042 Score=61.98 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=78.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...++|++=.|+|+|..-..... ...++.||.|.....+.++... +....+.+++..|+..+++....
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~---------- 111 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT---------- 111 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC----------
Confidence 35789999999999987666654 3499999999999999999973 32367899999999999888651
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc-HHHHHH--HHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLT--VKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~-~~fl~~--~~~~L~~~Gilv~Nl 689 (771)
...||+|++|- +- ...++. ..-+.. -...|+|+|++++--
T Consensus 112 --------------------~~~FDlVflDP--Py--------~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 112 --------------------REPFDLVFLDP--PY--------AKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred --------------------CCcccEEEeCC--CC--------ccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 12599999963 11 122332 222233 245689999999765
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0025 Score=72.26 Aligned_cols=125 Identities=13% Similarity=0.144 Sum_probs=82.1
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC---C
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF---M 131 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~---~ 131 (771)
...+++.. .++.++||+=||.|.++..|++... +|+|+|+++.+++.|++.++..+ .|++|..+|++++.. .
T Consensus 284 ~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 284 TALEWLEL---AGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHhh---cCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34444443 5678999999999999999997655 99999999999998876665544 569999999998742 2
Q ss_pred CCCccEEEeccccccccCcccchHHHH-HHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCc
Q 004164 132 DETFDVILDKGGLDALMEPELGHKLGN-QYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 196 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~~~~~~~~-~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w 196 (771)
...||.|+.. .+-.+ +. .+++.+.+. +|-.++++ +..+..+.+.+......++
T Consensus 360 ~~~~d~VvvD-------PPR~G---~~~~~lk~l~~~-~p~~IvYV-SCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 360 GYKPDVVVVD-------PPRAG---ADREVLKQLAKL-KPKRIVYV-SCNPATLARDLAILASTGY 413 (432)
T ss_pred cCCCCEEEEC-------CCCCC---CCHHHHHHHHhc-CCCcEEEE-eCCHHHHHHHHHHHHhCCe
Confidence 3578999942 22211 22 445555544 44444444 4444444444444334444
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0033 Score=73.53 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=62.9
Q ss_pred ccchhHHHHHHHHhhCCC-C---CCCCCeEEEEcCCcchhHHHHHhcC---------CCeEEEEcCCHHHHHHHHHHhhc
Q 004164 47 YAEWPQLRDPLISLIGAP-T---SSPPPQILVPGCGNSRLSEHLYDAG---------FHGITNVDFSKVVISDMLRRNVR 113 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~-~---~~~~~~ILDiGCG~G~ls~~La~~g---------~~~V~~vDiS~~~i~~~~~~~~~ 113 (771)
|.....+...+..++... . .....+|||+|||+|.+...+++.. ..+++++|+++.++..++..+..
T Consensus 6 fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~ 85 (524)
T TIGR02987 6 FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE 85 (524)
T ss_pred cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence 344556667677665321 0 0134699999999999998887641 14789999999999877665433
Q ss_pred CC-CCcEEEEeecCCC-----CCCCCCccEEEecccccc
Q 004164 114 DR-SDMRWRVMDMTSM-----QFMDETFDVILDKGGLDA 146 (771)
Q Consensus 114 ~~-~~i~~~~~D~~~l-----~~~~~sFDlVi~~~~l~~ 146 (771)
.. ..+...+.|.... .-..+.||+|+.+-..--
T Consensus 86 ~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 86 FALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGR 124 (524)
T ss_pred cCCCCceeeecccccccccccccccCcccEEEeCCCccc
Confidence 22 2344454443321 111257999998765543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0015 Score=66.13 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=44.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...+||+||+|.|.+...+.... ...+++||+++.+++.|++. +++++.+|..+.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~ 67 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEG 67 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhc
Confidence 34589999999999988887664 45789999999999998752 367888887653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0027 Score=64.12 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=88.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcc---hHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD---GIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~D---g~~~l~~~~~~~~~~~~~ 617 (771)
.+.=||+||+|+|.....|.... ...+.|||+|.|+++|.+ +.-+. .++.+| |+.|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~--~e~eg---dlil~DMG~Glpf-------------- 108 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE--RELEG---DLILCDMGEGLPF-------------- 108 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH--hhhhc---CeeeeecCCCCCC--------------
Confidence 45569999999998888887764 589999999999999986 22122 233333 2222
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEE-e----CCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILII-D----VDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D----~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....||.+|. - +.+.|.+. ..+.---..|+..+..+|+.++-.|+.+...
T Consensus 109 ---------------------rpGtFDg~ISISAvQWLcnA~~s~----~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 109 ---------------------RPGTFDGVISISAVQWLCNADKSL----HVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred ---------------------CCCccceEEEeeeeeeecccCccc----cChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 2467887763 1 12333322 2333334679999999999999999999999
Q ss_pred ChhHHHHHH-HHHHHhccceEEee
Q 004164 693 SQATKDMVI-SRMKMVFNHLFCLQ 715 (771)
Q Consensus 693 ~~~~~~~v~-~~l~~vF~~v~~~~ 715 (771)
+.+..+++. +.+++=|.--..++
T Consensus 164 n~~q~d~i~~~a~~aGF~GGlvVd 187 (270)
T KOG1541|consen 164 NEAQIDMIMQQAMKAGFGGGLVVD 187 (270)
T ss_pred chHHHHHHHHHHHhhccCCceeee
Confidence 888888777 55666687533333
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0016 Score=66.04 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=69.5
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC---CCCCccEEEeccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF---MDETFDVILDKGGLD 145 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~---~~~sFDlVi~~~~l~ 145 (771)
..++|||||=+...... ..+.-+|+.||+++ . .-.+.+.|+.+.|. ++++||+|.+.-+|.
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns-----~---------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNS-----Q---------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCC-----C---------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 47999999865443321 23444799999987 1 12346778888765 467999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeE-----EEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGK-----FVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~-----~ii~~~~ 180 (771)
+++++. .+-.++..++++|+|+|. ++++...
T Consensus 116 fVP~p~----~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 116 FVPDPK----QRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred eCCCHH----HHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 999876 378999999999999999 7776543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0032 Score=62.60 Aligned_cols=125 Identities=14% Similarity=0.196 Sum_probs=72.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC---CCCCeeEEEcchHHHH-HhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFV-REMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~---~~~r~~v~i~Dg~~~l-~~~~~~~~~~~ 615 (771)
....+||.||.|.|...+.+....+..+|++-|+++ +++..+...... ...++.+..-|=-+-+ .+..
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~------- 115 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL------- 115 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH-------
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc-------
Confidence 456899999999999988888886667999999999 888887775331 2456666554311101 1111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
+..+||+||. +|-.. ..-.-+.+++.++.+|+++|.+++-.-.|...
T Consensus 116 -----------------------~~~~~D~Ila----sDv~Y------~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~ 162 (173)
T PF10294_consen 116 -----------------------EPHSFDVILA----SDVLY------DEELFEPLVRTLKRLLKPNGKVLLAYKRRRKS 162 (173)
T ss_dssp -----------------------S-SSBSEEEE----ES--S-------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TG
T ss_pred -----------------------ccccCCEEEE----ecccc------hHHHHHHHHHHHHHHhCCCCEEEEEeCEecHH
Confidence 1257999996 22111 11234889999999999999877666556443
Q ss_pred HHHHHHHHHHH
Q 004164 696 TKDMVISRMKM 706 (771)
Q Consensus 696 ~~~~v~~~l~~ 706 (771)
. ..+++++++
T Consensus 163 ~-~~F~~~~~k 172 (173)
T PF10294_consen 163 E-QEFFDRLKK 172 (173)
T ss_dssp G-CHHHHHH--
T ss_pred H-HHHHHHhhh
Confidence 3 446777665
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0031 Score=61.84 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=57.3
Q ss_pred EEEEcCHHHHHHHHhhcCCC---CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeE
Q 004164 569 EAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDI 645 (771)
Q Consensus 569 ~~VEiD~~v~~vA~~~Fg~~---~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDv 645 (771)
++||+++.|+++|++..... ..++++++++|+.+. . ..+..||+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l----p-----------------------------~~~~~fD~ 47 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL----P-----------------------------FDDCEFDA 47 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC----C-----------------------------CCCCCeeE
Confidence 47999999999998765321 134799999998764 1 11367999
Q ss_pred EEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 646 LIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 646 Ii~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
|++-. ....+. --..+|+.+++.|+|||.|++--++..
T Consensus 48 v~~~~----~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 48 VTMGY----GLRNVV------DRLRAMKEMYRVLKPGSRVSILDFNKS 85 (160)
T ss_pred EEecc----hhhcCC------CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 99721 111111 126899999999999999987655543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0026 Score=66.18 Aligned_cols=62 Identities=27% Similarity=0.260 Sum_probs=51.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEcchHHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~Dg~~~ 603 (771)
..+--||.||-|+|.|+.-|.+.. .+|.+||+||.|+.--.+.+ |.+...+++|+++|.+..
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 445669999999999999999886 58999999999987555555 777778999999998764
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0012 Score=70.02 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=51.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...+||+||+|.|.++..|.... .+|++||+|+.+++.+++.+.- .++++++.+|+.++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~ 87 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKV 87 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccC
Confidence 34689999999999999999883 4899999999999999998853 46899999999764
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00011 Score=72.82 Aligned_cols=95 Identities=19% Similarity=0.381 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
...++||+|+|.|..+..++.. +.+|.+.+.|..|+.+.+++.-.--..+.|.+ .+-+||+|.+-..|+-.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~ew~~--------t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQ--------TDVKLDLILCLNLLDRC 182 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehhhhh--------cCceeehHHHHHHHHhh
Confidence 4579999999999999988765 45899999999888877654311111122221 23469999999999877
Q ss_pred cCcccchHHHHHHHHHHHHcccc-CeEEEEEE
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKS-GGKFVCLT 178 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkp-GG~~ii~~ 178 (771)
.++- ++|+.++.+|+| +|+.|+.-
T Consensus 183 ~~p~-------kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 183 FDPF-------KLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred cChH-------HHHHHHHHHhccCCCcEEEEE
Confidence 6654 899999999999 88877643
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0018 Score=64.21 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=82.6
Q ss_pred HHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhh-cCCCCcEEEEeecCCCCCCCCC
Q 004164 57 LISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQFMDET 134 (771)
Q Consensus 57 l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~-~~~~~i~~~~~D~~~l~~~~~s 134 (771)
+.+++.. +..-.+.+|||+|.|+|..+..-+..|...|++.|+.+-.+. +.+.|. ..+-.+.+...|... .+..
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~-ai~lNa~angv~i~~~~~d~~g---~~~~ 142 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQ-AIRLNAAANGVSILFTHADLIG---SPPA 142 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHH-HhhcchhhccceeEEeeccccC---CCcc
Confidence 4455543 223467899999999999999999999889999999976665 445443 344567888777765 4678
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEE-EEEcCcchhh
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV-CLTLAESHVL 185 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i-i~~~~~~~~~ 185 (771)
||+|+....++.-.. ..+++. +.+.|+..|.-+ +-+...+++.
T Consensus 143 ~Dl~LagDlfy~~~~-------a~~l~~-~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 143 FDLLLAGDLFYNHTE-------ADRLIP-WKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred eeEEEeeceecCchH-------HHHHHH-HHHHHHhCCCEEEEeCCCCCCCc
Confidence 999999888886432 346677 777777666544 4445545443
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0091 Score=58.83 Aligned_cols=106 Identities=20% Similarity=0.166 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe-ecCCC--------CCCCCCc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMTSM--------QFMDETF 135 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~-D~~~l--------~~~~~sF 135 (771)
.|+++|||+||.+|.++....+. +.+-|.|||+-. . ...+.+.++++ |+++. ..++...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----~-----~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----I-----EPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----c-----cCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 57999999999999999877776 346799999754 1 12234555555 77663 1567789
Q ss_pred cEEEecccccccc----CcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 136 DVILDKGGLDALM----EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 136 DlVi~~~~l~~l~----~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
|+|++...-.+-. +....-++...++--....++|+|.|+|-.+...
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 9999754332211 1111112345566666778899999999888643
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0021 Score=65.61 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHh---h----c---CCCCcEEEEeecCCCCCCC--
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRN---V----R---DRSDMRWRVMDMTSMQFMD-- 132 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~---~----~---~~~~i~~~~~D~~~l~~~~-- 132 (771)
..+++..+|||||.|......+-. ++...+||++.+...+.+.... . . ...++.+..+|+.+.++..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 368899999999999998766644 7777999999998876554321 1 1 1245778888887654211
Q ss_pred -CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 133 -ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 133 -~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
..-|+|+++.+... ++ ....|.+....||+|-++|..
T Consensus 120 ~s~AdvVf~Nn~~F~---~~-----l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 WSDADVVFVNNTCFD---PD-----LNLALAELLLELKPGARIIST 157 (205)
T ss_dssp GHC-SEEEE--TTT----HH-----HHHHHHHHHTTS-TT-EEEES
T ss_pred hcCCCEEEEeccccC---HH-----HHHHHHHHHhcCCCCCEEEEC
Confidence 34699999876542 22 445667788889998886643
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0017 Score=68.52 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=52.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...+||+||.|.|.++..|....+ .+++||+|+.+++.+++.++. .++++++.+|+.++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKV 87 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcC
Confidence 457899999999999999999875 599999999999999998864 57899999999764
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0067 Score=61.96 Aligned_cols=122 Identities=14% Similarity=0.098 Sum_probs=83.9
Q ss_pred EEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCC-CccEEEeccccccc
Q 004164 72 ILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDE-TFDVILDKGGLDAL 147 (771)
Q Consensus 72 ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~-sFDlVi~~~~l~~l 147 (771)
|.||||--|.+..+|.+.|. ..++++|+++.-++.+++.....+ .++++..+|-.+. ++.+ ..|.|+..|+-..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHHH
Confidence 68999999999999999976 579999999999999988776655 5799999996552 2333 37999987765543
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCC
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 205 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~ 205 (771)
+..+|.+....++....|++............+ ...+|.+.-..+-.
T Consensus 80 ---------I~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L--~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 80 ---------IIEILEAGPEKLSSAKRLILQPNTHAYELRRWL--YENGFEIIDEDLVE 126 (205)
T ss_dssp ---------HHHHHHHTGGGGTT--EEEEEESS-HHHHHHHH--HHTTEEEEEEEEEE
T ss_pred ---------HHHHHHhhHHHhccCCeEEEeCCCChHHHHHHH--HHCCCEEEEeEEEe
Confidence 568888888888877788887665444322221 24488888777643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0085 Score=61.17 Aligned_cols=101 Identities=16% Similarity=0.048 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC------CCCCCCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM------QFMDETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l------~~~~~sFDl 137 (771)
...+.||||.=||..+..++.. .-+.|+++|+++...+...+..+..+ ..|++++++..+. ..+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 4689999997777666666554 33689999999999987765544333 6799999988653 245689999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++. ++- ......++.++.+++|+||++++-.
T Consensus 153 aFv----Dad------K~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFV----DAD------KDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEE----ccc------hHHHHHHHHHHHhhcccccEEEEec
Confidence 993 332 1235589999999999999988754
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0046 Score=66.44 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDlVi~~ 141 (771)
.++..|||+.+|.|.=+.++++. +.+.|++.|+++.-+..+.++..+.+ .++.....|..... .....||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 68899999999999999999887 34789999999999998877766555 46777777877651 233469999942
Q ss_pred ------cccccccCc------ccc---hHHHHHHHHHHHHcc----ccCeEEEEEEcC
Q 004164 142 ------GGLDALMEP------ELG---HKLGNQYLSEVKRLL----KSGGKFVCLTLA 180 (771)
Q Consensus 142 ------~~l~~l~~~------~~~---~~~~~~~l~~i~rvL----kpGG~~ii~~~~ 180 (771)
|++..-++. ++. .....++|....+.+ ||||+++.++.+
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 222221110 000 023778999999999 999999999976
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0021 Score=65.27 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=69.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
.....|+++-+|-|..+..+..+.+...|.++|++|..++..++...+. -.+++.++.+|+.+++.+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~------------ 167 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE------------ 167 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T------------
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc------------
Confidence 3457899999999988777887666678999999999999998887332 246899999999999772
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 685 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gil 685 (771)
..+|-||+++-.. ..+||..+..+++++|++
T Consensus 168 ----------------------~~~drvim~lp~~--------------~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 168 ----------------------GKFDRVIMNLPES--------------SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp ----------------------T-EEEEEE--TSS--------------GGGGHHHHHHHEEEEEEE
T ss_pred ----------------------cccCEEEECChHH--------------HHHHHHHHHHHhcCCcEE
Confidence 5699999954211 257999999999999986
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0077 Score=57.72 Aligned_cols=98 Identities=15% Similarity=0.216 Sum_probs=66.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHh-----cCCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCCCCCCCCccE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYD-----AGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQFMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~-----~g~~~V~~vDiS~~~i~~~~~~~~~~~----~~i~~~~~D~~~l~~~~~sFDl 137 (771)
.+...|+|+|||.|.++..|+. ....+|+++|.++..++.+.++..... .++.+..+++.+... ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 4678999999999999999998 433499999999999998877765443 356666666654322 456788
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
++. ||.-.+.. ..+++...+ ++-.+++.
T Consensus 103 ~vg---LHaCG~Ls------~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 103 LVG---LHACGDLS------DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEE---eecccchH------HHHHHHHHH---cCCCEEEE
Confidence 884 55443322 355555554 55444443
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0045 Score=67.18 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.++.++|||||++|.++..|.+.|. .|++||..+ |.... ...+++.....|......+.+.+|++++-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-----l~~~L-~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-----MAQSL-MDTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-----cCHhh-hCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 5789999999999999999999998 999999665 33333 3457888888888766433678999997443
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.045 Score=54.94 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=71.6
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHH---HHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTM---LNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v---~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
++++||.|+|.=...|.-.+|+.+++.||-...= ++.+...+|+ ++++++.+.+-+ ...
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~--~~~------------- 112 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVINGRAEE--PEY------------- 112 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH--TTT-------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEEEeeecc--ccc-------------
Confidence 7999999999666667788899999999999864 4455666788 469999998877 111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+.=+.++ -..+++.+...|+++|.+++--
T Consensus 113 -------------------~~~fd~v~aRAv~~--------------l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 113 -------------------RESFDVVTARAVAP--------------LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -------------------TT-EEEEEEESSSS--------------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred -------------------CCCccEEEeehhcC--------------HHHHHHHHHHhcCCCCEEEEEc
Confidence 36899999966554 1678899999999999988654
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0086 Score=60.26 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=78.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDlVi~~~~l 144 (771)
.++.+||++|-|-|.....+.+.....-+-|+.++.+++.|+.-.-....++....+-.++. .++++.||-|+-...-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 47899999999999999888887665788899999999988765433445677666655443 4678899999843221
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.+. + ......+.+.|+|||+|+|-...
T Consensus 180 e~y---E----dl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELY---E----DLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHH---H----HHHHHHHHHhhhcCCCceEEEec
Confidence 111 1 26678889999999999986654
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0036 Score=61.53 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=53.5
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
..+..+|.|+|.|+++..+.- -+|.+||.||...+.|++...++.+.++.|+++||+.|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 458899999999999888873 49999999999999999998888889999999999998
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0032 Score=63.90 Aligned_cols=45 Identities=27% Similarity=0.363 Sum_probs=34.9
Q ss_pred CCCCcEEEEecccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhh
Q 004164 540 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 540 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiD~~v~~vA~~~ 584 (771)
+.+.+|...|+++| +|++.|.+..+ ..+|.+.|||+.+++.|++-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 46789999999999 89999998432 35999999999999999764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.01 Score=62.50 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=69.4
Q ss_pred CCeEEEEcCCcc--hhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCCCC-----------CC
Q 004164 69 PPQILVPGCGNS--RLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQ-----------FM 131 (771)
Q Consensus 69 ~~~ILDiGCG~G--~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~--i~~~~~D~~~l~-----------~~ 131 (771)
-...||||||-= ..+.+.++. .-.+|+-+|+.+.++..++..+.. .++ ..++.+|+.+.. +.
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-NPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-CCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 468999999943 345556554 456999999999999988766643 355 889999998742 11
Q ss_pred CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
-...=.|+..++||++.+.++ ...++..++..|.||.+++++..+.+
T Consensus 148 ~~rPVavll~~vLh~v~D~~d----p~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDD----PAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCT----HHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCeeeeeeeeeccCCCccC----HHHHHHHHHHhCCCCceEEEEecCCC
Confidence 122336778899999987443 57999999999999999999988754
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0031 Score=61.76 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=48.9
Q ss_pred eEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCCC--CCCCC-ccEEEec
Q 004164 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ--FMDET-FDVILDK 141 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~~D~~~l~--~~~~s-FDlVi~~ 141 (771)
.|+|+.||.|..+..+++... +|++||+++..++.+ +.+.+.+ .++.|+++|..++. +.... ||+|+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a-~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECA-KHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHH-HHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHH-HHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999854 899999999999866 4444433 47999999998762 22222 8999954
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0047 Score=60.55 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=47.6
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~ 608 (771)
.|+++.+|.|+-+..+...+ .+|.+||+||.-++.|+.....- ..++++++.+|..+.+++..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~ 65 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK 65 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc
Confidence 47888899898887777776 47999999999999999886221 26789999999999877754
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.03 Score=53.38 Aligned_cols=124 Identities=11% Similarity=0.134 Sum_probs=75.6
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--CCCCCccEEEeccccccccCcccc----hHHHHHHHHHH
Q 004164 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALMEPELG----HKLGNQYLSEV 164 (771)
Q Consensus 93 ~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l~~l~~~~~~----~~~~~~~l~~i 164 (771)
+|+++||-+.+|+..++++.+.+ .+++++..+=.++. .+.+++|+++.+ |.+++..+.. ++.--.+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 58999999999999998887664 46999988877774 233489998864 5666654422 12255788999
Q ss_pred HHccccCeEEEEEEcCc-ch-h-----hcchhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEE
Q 004164 165 KRLLKSGGKFVCLTLAE-SH-V-----LGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADK 222 (771)
Q Consensus 165 ~rvLkpGG~~ii~~~~~-~~-~-----~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k 222 (771)
.++|+|||+++++.|.. +. . ...+.... ...|.+....+.. ...-++|.++++|
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N----~~~~pp~l~~ieK 140 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN----QKNNPPLLVIIEK 140 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-----SS---EEEEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC----CCCCCCEEEEEEC
Confidence 99999999999998862 21 1 11222222 3467776655543 3445677777765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0092 Score=63.66 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=69.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHH---HHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLN---LAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~---vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
+.++||+||+|.|.-.--+....+. .|.++|-++--.- .++++.|. +. .......|++.+.. .
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~--~~-~~~~lplgvE~Lp~-~--------- 180 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQ--DP-PVFELPLGVEDLPN-L--------- 180 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCC--Cc-cEEEcCcchhhccc-c---------
Confidence 4579999999999887666666543 7888887766543 44555553 22 23334578877655 2
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
..||+||. -..-.-+..| .+.|..+++.|++||.+|+-..
T Consensus 181 -----------------------~~FDtVF~----MGVLYHrr~P------l~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 181 -----------------------GAFDTVFS----MGVLYHRRSP------LDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred -----------------------CCcCEEEE----eeehhccCCH------HHHHHHHHHhhCCCCEEEEEEe
Confidence 57999987 1111112223 6789999999999999997654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0036 Score=66.53 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=62.0
Q ss_pred CCccchhH-HHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC
Q 004164 511 HGYLASSY-HMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ 589 (771)
Q Consensus 511 ~~~L~~~Y-~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~ 589 (771)
.+||..+- ...|+..+-+ .....|++||-|.|.++..|.+.. .++++||+|+...+.-++.|. .
T Consensus 10 QnFL~~~~~~~~Iv~~~~~-----------~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~ 74 (262)
T PF00398_consen 10 QNFLVDPNIADKIVDALDL-----------SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--S 74 (262)
T ss_dssp SSEEEHHHHHHHHHHHHTC-----------GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--T
T ss_pred cCeeCCHHHHHHHHHhcCC-----------CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--h
Confidence 45676543 3445544322 245789999999999999999987 689999999999999999887 5
Q ss_pred CCCeeEEEcchHHH
Q 004164 590 DKSLKVHITDGIKF 603 (771)
Q Consensus 590 ~~r~~v~i~Dg~~~ 603 (771)
+++++++.+|+.++
T Consensus 75 ~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 75 NPNVEVINGDFLKW 88 (262)
T ss_dssp CSSEEEEES-TTTS
T ss_pred cccceeeecchhcc
Confidence 78999999999986
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.052 Score=56.70 Aligned_cols=128 Identities=15% Similarity=0.182 Sum_probs=87.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
.....|+.-|.|.|++..++.... |.-++...|.+..-.+-|++.| |. ++.+++.+.|--.-
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~~------------ 169 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCGS------------ 169 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeecccC------------
Confidence 345689999999999998877765 6669999999999999999999 43 55677776653210
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
........+|+|++|+-+++ +.+-.+.++|+.+|.-++|+ ++.-+
T Consensus 170 -------------------GF~~ks~~aDaVFLDlPaPw---------------~AiPha~~~lk~~g~r~csF-SPCIE 214 (314)
T KOG2915|consen 170 -------------------GFLIKSLKADAVFLDLPAPW---------------EAIPHAAKILKDEGGRLCSF-SPCIE 214 (314)
T ss_pred -------------------CccccccccceEEEcCCChh---------------hhhhhhHHHhhhcCceEEec-cHHHH
Confidence 00111367999999996663 22333445788888777776 34444
Q ss_pred HHHHHHHHHHH-hccceEEeee
Q 004164 696 TKDMVISRMKM-VFNHLFCLQL 716 (771)
Q Consensus 696 ~~~~v~~~l~~-vF~~v~~~~~ 716 (771)
..+.-.+.|.+ =|-++-.+++
T Consensus 215 Qvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 215 QVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred HHHHHHHHHHhCCCceEEEEEe
Confidence 44455566655 4666655554
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0037 Score=67.07 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCCcEEEEecccc----HHHHHHHHhCC----CCcEEEEEcCHHHHHHHHhh
Q 004164 541 KSVKAVVIGLGAG----LLPMFLHECMP----FVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 541 ~~~~vLviGlG~G----~l~~~L~~~~p----~~~i~~VEiD~~v~~vA~~~ 584 (771)
.+.||...|+++| +++|.|.+.++ ..+|.+.|||+.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 4589999999999 89999998754 35899999999999999775
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0018 Score=58.54 Aligned_cols=96 Identities=18% Similarity=0.082 Sum_probs=43.3
Q ss_pred EEEcCCcchhHHHHHhc----CCCeEEEEcCCHH---HHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCCccEEEeccc
Q 004164 73 LVPGCGNSRLSEHLYDA----GFHGITNVDFSKV---VISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGG 143 (771)
Q Consensus 73 LDiGCG~G~ls~~La~~----g~~~V~~vDiS~~---~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDlVi~~~~ 143 (771)
||+|+..|..+..+++. +..+++++|..+. .-+.+++ .....+++++.++..+. .++.++||+|+.-+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999988888764 2237999999994 3322222 12235799999998754 244579999996542
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
-.+ ......+..+.+.|+|||.+++-+
T Consensus 79 H~~--------~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSY--------EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H--------HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCH--------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 211 226688999999999999988754
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0065 Score=59.78 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=74.4
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc-CCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~-~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
.+.+.|+|+|+|.++...+.. ..+|++++.+|...+.+.+...- ...+++.+.+|+.+..| +..|+|+|...=.++
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 478999999999999877776 45899999999777655443222 23578999999999988 467999987544455
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
...+ .-.++..+...||-++.++
T Consensus 110 i~E~-----qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 IEEK-----QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hccc-----ccHHHHHHHHHhhcCCccc
Confidence 4443 3467777777899888765
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.051 Score=57.61 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=93.6
Q ss_pred ecCCccchhHHHHHHHHhh----hhhhhhhhhhccCCCCcEEEEecccc-HHHHHHHHhCC-CCcEEEEEcCHHHHHHHH
Q 004164 509 VYHGYLASSYHMGIISGFT----LISSYLESVASVGKSVKAVVIGLGAG-LLPMFLHECMP-FVGIEAVELDLTMLNLAE 582 (771)
Q Consensus 509 vd~~~L~~~Y~~~m~~~l~----l~~~~~~~~~~~~~~~~vLviGlG~G-~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~ 582 (771)
+|..||...=-+++=.--. ++...+......+.+.+||.|-+|.| .+.-.|..+-. ..+|..+|.+|.-++.++
T Consensus 99 iDr~yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~ 178 (311)
T PF12147_consen 99 IDRNYLNAIGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR 178 (311)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH
Confidence 7888888765555521111 11111222224578999999999999 44445555532 269999999999999887
Q ss_pred hhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC
Q 004164 583 DYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 659 (771)
Q Consensus 583 ~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~ 659 (771)
+.- |+ .+-++++.+||.+.- +++. -..+++++|+ +|+
T Consensus 179 ~li~~~gL--~~i~~f~~~dAfd~~-~l~~-----------------------------l~p~P~l~iV--------sGL 218 (311)
T PF12147_consen 179 ALIAERGL--EDIARFEQGDAFDRD-SLAA-----------------------------LDPAPTLAIV--------SGL 218 (311)
T ss_pred HHHHHcCC--ccceEEEecCCCCHh-Hhhc-----------------------------cCCCCCEEEE--------ecc
Confidence 765 65 455699999998752 1110 1256888887 122
Q ss_pred CcCCcCccc----HHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 660 TCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 660 s~pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
-+-|-+ ..-|.-+..+|.|||.+|.---+.+++
T Consensus 219 ---~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 219 ---YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred ---hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 222333 335677889999999999876555655
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.018 Score=61.20 Aligned_cols=121 Identities=21% Similarity=0.262 Sum_probs=74.1
Q ss_pred hhHHHHHHHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHh---hcC-----------
Q 004164 50 WPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN---VRD----------- 114 (771)
Q Consensus 50 ~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~---~~~----------- 114 (771)
|..+.+.|..+... .......+||..|||.|+++..|+..|+ ++-|-++|--|+-.-.=.+ ...
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~ 209 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQ 209 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeec
Confidence 33444444444432 1123467999999999999999999998 6777788876653111000 000
Q ss_pred ---------------CC------------CcEEEEeecCCC---CCCCCCccEEEeccccccccCcccchHHHHHHHHHH
Q 004164 115 ---------------RS------------DMRWRVMDMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164 (771)
Q Consensus 115 ---------------~~------------~i~~~~~D~~~l---~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i 164 (771)
.| .++...+|+.+. +-..++||+|+....++... .+-.+++.|
T Consensus 210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~-------NileYi~tI 282 (369)
T KOG2798|consen 210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH-------NILEYIDTI 282 (369)
T ss_pred cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH-------HHHHHHHHH
Confidence 01 111223444432 11234799999775555422 277899999
Q ss_pred HHccccCeEEEEEE
Q 004164 165 KRLLKSGGKFVCLT 178 (771)
Q Consensus 165 ~rvLkpGG~~ii~~ 178 (771)
..+|||||+.+=..
T Consensus 283 ~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 283 YKILKPGGVWINLG 296 (369)
T ss_pred HHhccCCcEEEecc
Confidence 99999999988654
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.016 Score=62.45 Aligned_cols=106 Identities=19% Similarity=0.184 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHH--hh----c--CCCCcEEEEeecCCC-CCCCCCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRR--NV----R--DRSDMRWRVMDMTSM-QFMDETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~--~~----~--~~~~i~~~~~D~~~l-~~~~~sFDl 137 (771)
...++|-+|.|.|...++|.+.+ ..+|+-+|.+|.||+.++.. .. . ..++++.+..|+.+. .-..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 45799999999999999999985 78999999999999976521 11 1 226888888888765 223458999
Q ss_pred EEeccccccccCcccchHH----HHHHHHHHHHccccCeEEEEEEc
Q 004164 138 ILDKGGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~----~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
||.. ++++.+ +.. -..+.....+.|+++|.+++..-
T Consensus 369 vIVD-----l~DP~t-ps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 369 VIVD-----LPDPST-PSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEEe-----CCCCCC-cchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 9842 233332 111 34667778899999999988653
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.03 Score=60.51 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=58.9
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
++-+...+.+++.. .++...+|.--|.|..+..+.+. +.+.++|+|-++.+++.+.++......++.++..++.++
T Consensus 5 ~PVll~Evl~~L~~---~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 5 IPVLLKEVLEALNP---KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNL 81 (310)
T ss_dssp --TTHHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGH
T ss_pred ecccHHHHHHhhCc---CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHH
Confidence 34445556666654 67889999999999999999886 447999999999999988777755557788888888775
Q ss_pred C-----C-CCCCccEEE
Q 004164 129 Q-----F-MDETFDVIL 139 (771)
Q Consensus 129 ~-----~-~~~sFDlVi 139 (771)
. . ....+|-|+
T Consensus 82 ~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 82 DEYLKELNGINKVDGIL 98 (310)
T ss_dssp HHHHHHTTTTS-EEEEE
T ss_pred HHHHHHccCCCccCEEE
Confidence 3 2 334666666
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.018 Score=63.14 Aligned_cols=147 Identities=14% Similarity=0.222 Sum_probs=91.3
Q ss_pred CCCcEEEEecc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCC-----CCCCeeEEEcchHHHHHhhcc
Q 004164 541 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFT-----QDKSLKVHITDGIKFVREMKS 609 (771)
Q Consensus 541 ~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-----g~~-----~~~r~~v~i~Dg~~~l~~~~~ 609 (771)
...+||+||+| ||-|..|..... ..+.+|||+++.++-|++.. +.. .+-...++.+|... ..+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~--~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS--ESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC--SHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc--chhhh
Confidence 56789999999 888999988754 58999999999999998877 100 01234566676652 11110
Q ss_pred CCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc----HHHHHHHHHccCCCcEE
Q 004164 610 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLF 685 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~----~~fl~~~~~~L~~~Gil 685 (771)
.+ .....+||+|=+=. |-+-.|-+ ..+|+++.++|+|||+|
T Consensus 138 --------~~-----------------~~~~~~FDvVScQF----------alHY~Fese~~ar~~l~Nvs~~Lk~GG~F 182 (331)
T PF03291_consen 138 --------KL-----------------PPRSRKFDVVSCQF----------ALHYAFESEEKARQFLKNVSSLLKPGGYF 182 (331)
T ss_dssp --------TS-----------------SSTTS-EEEEEEES-----------GGGGGSSHHHHHHHHHHHHHTEEEEEEE
T ss_pred --------hc-----------------cccCCCcceeehHH----------HHHHhcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 00 01135899996511 11333333 45999999999999999
Q ss_pred EEEeccCChhHHHHHHHHHHH--------hcc-ceEEeeecCC------ccEEEEEecCCC
Q 004164 686 IVNLVSRSQATKDMVISRMKM--------VFN-HLFCLQLEED------VNLVLFGLSSES 731 (771)
Q Consensus 686 v~Nl~~~~~~~~~~v~~~l~~--------vF~-~v~~~~~~~~------~N~Vl~a~~~~~ 731 (771)
+.-++ +.. .++.+|++ .|+ .+|.+..+.+ ++...|-+.+..
T Consensus 183 IgT~~--d~~---~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v 238 (331)
T PF03291_consen 183 IGTTP--DSD---EIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAV 238 (331)
T ss_dssp EEEEE---HH---HHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCS
T ss_pred EEEec--CHH---HHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcC
Confidence 98764 333 34555655 222 5777777666 777888776653
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.038 Score=57.78 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=67.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...++|+||.|.|..+.-++.+|. +|.+-|+++.|...-++. |+ +|+ |..+|- +.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k-g~------~vl--~~~~w~-~~------------- 148 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK-GF------TVL--DIDDWQ-QT------------- 148 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC-CC------eEE--ehhhhh-cc-------------
Confidence 567899999999999999998884 599999999997654432 33 454 333341 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEE-eC-CCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILII-DV-DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~-~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
+.+||+|.+ .+ |-.+. | ...|+.+++.|+|+|.+++-++
T Consensus 149 -------------------~~~fDvIscLNvLDRc~~------P------~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 149 -------------------DFKFDVISCLNVLDRCDR------P------LTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred -------------------CCceEEEeehhhhhccCC------H------HHHHHHHHHHhCCCCEEEEEEE
Confidence 357999975 11 22211 2 6789999999999999997654
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.011 Score=59.62 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCC----CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSM----QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~~D~~~l----~~~~~sFDlVi~ 140 (771)
....|+|.-||-|..+...+..+. .|++||+++.-|.-+ +.+.+-+ .+++|+++|+.++ .+....+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~A-khNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACA-RHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHH-hccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 356899999999999999998877 899999999999744 5554433 5899999999875 355555777775
Q ss_pred cccc
Q 004164 141 KGGL 144 (771)
Q Consensus 141 ~~~l 144 (771)
....
T Consensus 172 sppw 175 (263)
T KOG2730|consen 172 SPPW 175 (263)
T ss_pred CCCC
Confidence 4433
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.033 Score=61.41 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=82.3
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCCccEEE
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVIL 139 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDlVi 139 (771)
+.|+.+|||+.+.+|.=+.+++.. +-+.|++.|.+..-+......+.+.+ .+......|...+| |+. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 678999999999999888888765 44579999999988887666554444 45666777887664 554 899999
Q ss_pred ecccccc--ccCccc-------------chHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 140 DKGGLDA--LMEPEL-------------GHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 140 ~~~~l~~--l~~~~~-------------~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.-..... +...+. -..+.+++|.....++++||+++.+|.+
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 4332222 111110 0124788999999999999999998876
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.019 Score=54.60 Aligned_cols=57 Identities=5% Similarity=-0.073 Sum_probs=46.0
Q ss_pred eEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 004164 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (771)
.+||+|||.|..+..++..+. .+|+++|.++.+.+.+++.....+ +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999988865 389999999999998876654432 568888877765
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.21 Score=50.19 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=83.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHH----HHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTM----LNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v----~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||-||.-+|+.++.+....+.-.|-+||..|.+ +++|++. +++--+.+||..= ++...
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R------~Ni~PIL~DA~~P-~~Y~~------ 141 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR------PNIIPILEDARKP-EKYRH------ 141 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC------CCceeeecccCCc-HHhhh------
Confidence 55679999999999999999999887789999999975 4566553 4566677888632 11110
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC--
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS-- 693 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~-- 693 (771)
--...|+|+.|+-.++. ..-+..++...|+++|-+++-+-.|+
T Consensus 142 -----------------------~Ve~VDviy~DVAQp~Q------------a~I~~~Na~~FLk~~G~~~i~iKArSId 186 (231)
T COG1889 142 -----------------------LVEKVDVIYQDVAQPNQ------------AEILADNAEFFLKKGGYVVIAIKARSID 186 (231)
T ss_pred -----------------------hcccccEEEEecCCchH------------HHHHHHHHHHhcccCCeEEEEEEeeccc
Confidence 01459999999966653 26678899999999995554443332
Q ss_pred -----hhHHHHHHHHHHHhc
Q 004164 694 -----QATKDMVISRMKMVF 708 (771)
Q Consensus 694 -----~~~~~~v~~~l~~vF 708 (771)
.+.+..-+.+|.+-+
T Consensus 187 vT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 187 VTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred ccCCHHHHHHHHHHHHHhcC
Confidence 233444455555544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.025 Score=53.55 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=43.9
Q ss_pred CCCCcEEEEeccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHH
Q 004164 540 GKSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 602 (771)
Q Consensus 540 ~~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~ 602 (771)
.+..++|+||+|.|. ++..|.+.. .+|++||++|..++.|++. .++++++|-.+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~ 69 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL-------GLNAFVDDLFN 69 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh-------CCeEEECcCCC
Confidence 345789999999995 888888653 5999999999999988765 25788888764
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.039 Score=58.60 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=39.8
Q ss_pred CCCcEEEEecccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhh
Q 004164 541 KSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 541 ~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiD~~v~~vA~~~ 584 (771)
.+.+|...|+++| ++++.|.+.+| ..+|++.|||..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 5789999999999 99999999996 36999999999999999764
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.06 Score=55.47 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=71.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCC---CCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQ---FMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~---~~~~sFDlVi~~~ 142 (771)
.++..+||+|.-||.++..+.++|..+|+|+|..-..+. -+++ ..+++ .+...|+..+. +. +..|++++.-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~---~kLR-~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH---WKLR-NDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC---HhHh-cCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 478899999999999999999999999999999876554 2332 23443 34455665552 33 3678888765
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++-. ...+|..+..+++++|.++..-
T Consensus 153 SFIS----------L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 153 SFIS----------LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ehhh----------HHHHHHHHHHhcCCCceEEEEe
Confidence 5544 4588999999999998877653
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.03 Score=60.72 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=46.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~ 603 (771)
+.+.||.+|+|+|.|.+|.++.. ..+|.+||-+... +.|++-+.- ..++.++++.|..-+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence 35789999999999999999997 4599999987766 888887722 1245688887755443
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.041 Score=59.40 Aligned_cols=76 Identities=12% Similarity=0.055 Sum_probs=57.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
.+-+.+.+.+.+.. .++..++|.-||.|..+..+++. +.+.|+|+|.++.+++.++++......++.+++++..++
T Consensus 5 ~pVll~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l 81 (305)
T TIGR00006 5 QSVLLDEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANF 81 (305)
T ss_pred cchhHHHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHH
Confidence 44455555666543 57889999999999999999886 347999999999999988777644334666766666554
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.11 Score=55.38 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=52.0
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
+.++...+|.--|.|..+..+.+.. .++++++|-++.+|+.++++...-.++++++..++.++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l 85 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANL 85 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHH
Confidence 3788999999999999999998874 36799999999999999888765556777777766554
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.23 Score=50.45 Aligned_cols=143 Identities=14% Similarity=0.125 Sum_probs=93.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchH-----HHHHhhccCCccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI-----KFVREMKSSSATD 614 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~-----~~l~~~~~~~~~~ 614 (771)
....|++||.--|+-...+.++... ..|.+|||+|.-. .+.+..+.+|.. +=|.+.-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l------ 107 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEAL------ 107 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHc------
Confidence 4578999999999999999988754 4699999998532 223666666654 2222221
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-C--cCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-A--ADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p-p--~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
....+|+|+.|....- .|...- . ..-+....++.+...|+++|.|++-+.-
T Consensus 108 ------------------------~~~~~DvV~sD~ap~~--~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 108 ------------------------GGAPVDVVLSDMAPNT--SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred ------------------------CCCCcceEEecCCCCc--CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 1345899999986632 222110 1 1123445667788899999999987753
Q ss_pred CChhHHHHHHHHHHHhccceEEeeec----CCccEEEEEec
Q 004164 692 RSQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLS 728 (771)
Q Consensus 692 ~~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~~ 728 (771)
.. ..+.++..+++.|..|...+.. +.....++|..
T Consensus 162 g~--~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 162 GE--DFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKG 200 (205)
T ss_pred CC--CHHHHHHHHHHhhceeEEecCccccCCCceEEEEEec
Confidence 32 2346899999999998887653 23444555543
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.21 Score=51.29 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=80.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhccCC-CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHH---HHHHHHhhcCCCCCCCe
Q 004164 518 YHMGIISGFTLISSYLESVASVGK-SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLT---MLNLAEDYFGFTQDKSL 593 (771)
Q Consensus 518 Y~~~m~~~l~l~~~~~~~~~~~~~-~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~---v~~vA~~~Fg~~~~~r~ 593 (771)
|.+-++-++.+.... .. +.++++||.|+|.=...|.-.+|+.+|+.||-... -++.+.+.+|+ +++
T Consensus 50 ~~rHilDSl~~~~~~-------~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv 119 (215)
T COG0357 50 WQRHILDSLVLLPYL-------DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL---ENV 119 (215)
T ss_pred HHHHHHHHhhhhhcc-------cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC---CCe
Confidence 555555555544321 22 58999999999944444667789999999998764 55677777887 569
Q ss_pred eEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCc-eeEEEEeCCCCCCCCCCCcCCcCcccHHHH
Q 004164 594 KVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSGMTCPAADFVEGSFL 672 (771)
Q Consensus 594 ~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl 672 (771)
+++.+-+-+|-.+ .+ ||+|..=+.++ | ..+.
T Consensus 120 ~i~~~RaE~~~~~----------------------------------~~~~D~vtsRAva~-----L---------~~l~ 151 (215)
T COG0357 120 EIVHGRAEEFGQE----------------------------------KKQYDVVTSRAVAS-----L---------NVLL 151 (215)
T ss_pred EEehhhHhhcccc----------------------------------cccCcEEEeehccc-----h---------HHHH
Confidence 9999988777222 23 99998855444 1 5667
Q ss_pred HHHHHccCCCcEEEEEec
Q 004164 673 LTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 673 ~~~~~~L~~~Gilv~Nl~ 690 (771)
+-+...|++||.+++-..
T Consensus 152 e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 152 ELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred HHHHHhcccCCcchhhhH
Confidence 888888999888764433
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.029 Score=63.34 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHH----HHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPM----FLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQD 590 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~----~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~ 590 (771)
..|-+|+..+|.=.. +.+++.....|+++|.|-|=|.. ........+++.+||-+|..+-.-.. -++ ..+
T Consensus 346 ~~Yq~Ai~~AL~Drv----pd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~ 420 (649)
T KOG0822|consen 346 DQYQQAILKALLDRV----PDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWD 420 (649)
T ss_pred HHHHHHHHHHHHhhC----cccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhc
Confidence 358888886654111 11222335668999999995544 23334456799999999987765444 233 368
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
.+|+++-+|-+.|-.. ..+.|+|+..+-.+-..+ =+++|
T Consensus 421 ~~Vtii~~DMR~w~ap---------------------------------~eq~DI~VSELLGSFGDN--------ELSPE 459 (649)
T KOG0822|consen 421 NRVTIISSDMRKWNAP---------------------------------REQADIIVSELLGSFGDN--------ELSPE 459 (649)
T ss_pred CeeEEEeccccccCCc---------------------------------hhhccchHHHhhccccCc--------cCCHH
Confidence 8999999999998411 256899987765443322 25699
Q ss_pred HHHHHHHccCCCcEEE
Q 004164 671 FLLTVKDALSEQGLFI 686 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv 686 (771)
.|.-+...|+|+||.|
T Consensus 460 CLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 460 CLDGAQKFLKPDGISI 475 (649)
T ss_pred HHHHHHhhcCCCceEc
Confidence 9999999999999988
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.038 Score=57.65 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=53.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-------CC--CCCeeEEEcchHHHHHhhc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------TQ--DKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-------~~--~~r~~v~i~Dg~~~l~~~~ 608 (771)
+..++||++=.|.|..+..+.... .+|+.||-+|.+..+.++-+.- .. ..|++++.+|+++|++...
T Consensus 87 g~~p~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 87 DYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCEEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 344589999999999988887773 5699999999999988877632 11 1579999999999998754
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.038 Score=64.77 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=46.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC--------CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP--------FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p--------~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...+||+.|+|+|.+...+....+ ...+.++|||+..+..|+..+........++..+|.+..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~ 101 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSY 101 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccc
Confidence 456899999999987766655543 258999999999999998875332223467777777654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.022 Score=58.58 Aligned_cols=110 Identities=17% Similarity=0.277 Sum_probs=71.9
Q ss_pred CcEEEEeccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+||.||+|.|.+.--|.+..|+ ..|.++|-+|..+++.+++-++.+ .++...+-| +....
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~D-------lt~~~--------- 135 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWD-------LTSPS--------- 135 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhccccee-------ccchh---------
Confidence 38999999999776666666666 899999999999999999987744 333332222 22000
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEe-CCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIID-VDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D-~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
-+. ..+...+|+|.+= +-|. + ||... ...+.++.++|+|||.+++-=.+
T Consensus 136 --------~~~-----~~~~~svD~it~IFvLSA-----i--~pek~--~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 136 --------LKE-----PPEEGSVDIITLIFVLSA-----I--HPEKM--QSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred --------ccC-----CCCcCccceEEEEEEEec-----c--ChHHH--HHHHHHHHHHhCCCcEEEEeecc
Confidence 000 1123567877531 1222 1 23333 77899999999999999964333
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.056 Score=54.12 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC--------CCCcEEEEeecCCC-C--CCCCCc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--------RSDMRWRVMDMTSM-Q--FMDETF 135 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~--------~~~i~~~~~D~~~l-~--~~~~sF 135 (771)
..-.+.|||||.|.+...|+.. +-.-|.|.+|--.+-+..+++.... .+++.....+.... | |..++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3468999999999999999877 3356889988777766665554321 24566666555443 1 111111
Q ss_pred cEEEeccccccccCcccc------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 136 DVILDKGGLDALMEPELG------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+ -.+..++++.-- .-.-..++.+..-+|++||.++.++-.
T Consensus 140 s-----kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 140 S-----KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred c-----cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 1 111122222100 001347889999999999999988754
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.004 Score=59.44 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=50.3
Q ss_pred CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 116 SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 116 ~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.+.+++-.....+|.+++.|+|++..++.|+.-.+ ...++++++|+|||||++-|....
T Consensus 29 ~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E-----g~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 29 PEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE-----GTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH-----HHHHHHHHHHHhCcCcEEEEEcCC
Confidence 355666655666789999999999999999998655 578999999999999999998755
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.095 Score=56.49 Aligned_cols=130 Identities=16% Similarity=0.104 Sum_probs=75.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCC-----CcEEEE
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-----DMRWRV 122 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~-----~i~~~~ 122 (771)
|..+...|..+-...+.-...+|||+|.|+|.-...+.+. ...+++.++.|+..-+..-.......+ +..-+.
T Consensus 95 Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 95 YASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccc
Confidence 4455555555443323344578999999999888777665 235677888887443322211111111 122233
Q ss_pred eecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 123 MDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 123 ~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
.|-..++. ...|++|+ +++-+.....+. -+..+++.+..++.|||.+++++-+.+.-
T Consensus 175 ~dRl~lp~-ad~ytl~i---~~~eLl~d~~ek-~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 175 EDRLSLPA-ADLYTLAI---VLDELLPDGNEK-PIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhccCCCc-cceeehhh---hhhhhccccCcc-hHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 34334443 24677777 444444333221 14458999999999999999999876543
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.077 Score=56.71 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=67.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+-||.+|.|.|.|.+|..... ..+|-+||.+ +|.+.|++-- +-.-.+|+.|+-|-- +++.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKi----Edie------------ 239 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKI----EDIE------------ 239 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcc----cccc------------
Confidence 3558999999999999998885 4499999987 4677887765 222357888887733 2222
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
-.++.|+||. ++.+-| --.+.+ .|-+-.+++-|+|+|...
T Consensus 240 ------------------LPEk~DviIS-----EPMG~m-L~NERM--LEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 240 ------------------LPEKVDVIIS-----EPMGYM-LVNERM--LESYLHARKWLKPNGKMF 279 (517)
T ss_pred ------------------CchhccEEEe-----ccchhh-hhhHHH--HHHHHHHHhhcCCCCccc
Confidence 1378999997 332211 112222 334556789999999765
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.2 Score=56.92 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=82.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+++++=+|.|..+..|.... .+|++||++|..++.|++.-....-.++.++.+|+.++.....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~------------ 358 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW------------ 358 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc------------
Confidence 44689999999999999998554 6899999999999999988744333449999999999987753
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
++..+|+||+|- +..| .++++++.+.+ +.|..++-+ .|....+.+.
T Consensus 359 ------------------~~~~~d~VvvDP----PR~G--------~~~~~lk~l~~-~~p~~IvYV--SCNP~TlaRD 404 (432)
T COG2265 359 ------------------EGYKPDVVVVDP----PRAG--------ADREVLKQLAK-LKPKRIVYV--SCNPATLARD 404 (432)
T ss_pred ------------------ccCCCCEEEECC----CCCC--------CCHHHHHHHHh-cCCCcEEEE--eCCHHHHHHH
Confidence 135799999963 2233 34788887776 556666554 4454444444
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.063 Score=55.93 Aligned_cols=81 Identities=21% Similarity=0.132 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++..+|+|||||-=-++..+.... ...|+|+||+..+++....-....+.+.+....|...-+ +....|+.+.--+++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHHH
Confidence 357899999999988887766552 359999999999999776665666788889999988764 457799999776666
Q ss_pred ccc
Q 004164 146 ALM 148 (771)
Q Consensus 146 ~l~ 148 (771)
.+.
T Consensus 183 ~le 185 (251)
T PF07091_consen 183 CLE 185 (251)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.14 Score=54.92 Aligned_cols=48 Identities=33% Similarity=0.473 Sum_probs=42.9
Q ss_pred CCCCcEEEEecc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC
Q 004164 540 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT 588 (771)
Q Consensus 540 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~ 588 (771)
....+|||+|.| .|.++....+.+.-.+|.++|+++.-+++||+ ||..
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~ 216 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT 216 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe
Confidence 556799999999 68888888889988899999999999999999 9873
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.23 Score=51.55 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=58.1
Q ss_pred CCCcEEEEecccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
..++||+||=+.- +|+..|. +.| .+|+|||||+.+++.-++.. |+ .++.+..|-++=+.+.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~-~~~-~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~-------- 109 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALT-GLP-KRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEEL-------- 109 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHH-T---SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTT--------
T ss_pred cCCEEEEEcCCcHHHHHHHhh-CCC-CeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHH--------
Confidence 3578999996655 4444443 334 59999999999998766443 65 38999999887665532
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCc-EEEEEeccCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVNLVSRS 693 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~G-ilv~Nl~~~~ 693 (771)
.++||+++.|- +....|| .-|+....+.|+..| ...+.+...+
T Consensus 110 -----------------------~~~fD~f~TDP--PyT~~G~---------~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 110 -----------------------RGKFDVFFTDP--PYTPEGL---------KLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp -----------------------SS-BSEEEE-----SSHHHH---------HHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred -----------------------hcCCCEEEeCC--CCCHHHH---------HHHHHHHHHHhCCCCceEEEEEecCc
Confidence 27899999953 2222233 568888999997766 5455554443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.28 Score=50.08 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=92.5
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~ 132 (771)
.+..+++ .+.++.|+||--+.+..+|.+.+ ...++++|+++..++.+.+.....+ ++++..++|....--.+
T Consensus 9 ~va~~V~-----~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~ 83 (226)
T COG2384 9 TVANLVK-----QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELE 83 (226)
T ss_pred HHHHHHH-----cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCcc
Confidence 3555664 35569999999999999999885 4689999999999998877665444 56778888875432234
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCCC
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 206 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~ 206 (771)
..+|+|+..|+-..+ +..++++-...|+.=-+|++.-...+......+ ...+|.+....+...
T Consensus 84 d~~d~ivIAGMGG~l---------I~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L--~~~~~~I~~E~ileE 146 (226)
T COG2384 84 DEIDVIVIAGMGGTL---------IREILEEGKEKLKGVERLILQPNIHTYELREWL--SANSYEIKAETILEE 146 (226)
T ss_pred CCcCEEEEeCCcHHH---------HHHHHHHhhhhhcCcceEEECCCCCHHHHHHHH--HhCCceeeeeeeecc
Confidence 479999987755443 668888888888754456654433332221111 134898888777543
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.032 Score=63.04 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=58.1
Q ss_pred ccchhHHHHHHHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEee
Q 004164 47 YAEWPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMD 124 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D 124 (771)
++......+.|..++.. ...+.+..+||+-||||..+..+++. ...|+||++++.++..|.+.+...+ .|.+|+++-
T Consensus 361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq 439 (534)
T KOG2187|consen 361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ 439 (534)
T ss_pred hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence 33333444444444433 12256688999999999999999765 5699999999999999866554444 689999996
Q ss_pred cCCC
Q 004164 125 MTSM 128 (771)
Q Consensus 125 ~~~l 128 (771)
++++
T Consensus 440 aE~~ 443 (534)
T KOG2187|consen 440 AEDL 443 (534)
T ss_pred hhhc
Confidence 6554
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.037 Score=60.04 Aligned_cols=95 Identities=24% Similarity=0.293 Sum_probs=66.7
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
-..++++|+|.|.+...+...+|+ |..|+.|..-+..++.+++ + .+.-+.+|+++= .
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~---~-------------- 234 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD---T-------------- 234 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C---Ccceeccccccc---C--------------
Confidence 356899999999888888878876 8888888766666666654 2 267777887652 2
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEE-----eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE--Eecc
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILII-----DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV--NLVS 691 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~-----D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~--Nl~~ 691 (771)
.+=|+|++ |....| + ..||++|++.|.|+|.+++ |+.+
T Consensus 235 -------------------P~~daI~mkWiLhdwtDed-----------c--vkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 235 -------------------PKGDAIWMKWILHDWTDED-----------C--VKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred -------------------CCcCeEEEEeecccCChHH-----------H--HHHHHHHHHhCCCCCEEEEEeccCC
Confidence 23357765 333222 1 6799999999999997775 4444
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.28 Score=48.67 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=94.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEE----EcchHHHHHhhccCCcccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH----ITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~----i~Dg~~~l~~~~~~~~~~~ 615 (771)
+..+||.+|..-|+......+.. |+-.|.+|||-+ +.- -+...++ +.|-..+.+=..
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p--~~Ga~~i~~~dvtdp~~~~ki~e------- 130 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP--PEGATIIQGNDVTDPETYRKIFE------- 130 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC--CCCcccccccccCCHHHHHHHHH-------
Confidence 35689999999999988877766 888999999843 211 1223333 334444432221
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-CcCcc--cHHHHHHHHHccCCCcEEEEEeccC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AADFV--EGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p-p~~f~--~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..++.+.|+|+.|...... |+.-- +.... -.+.|.-....|.|+|.|+.-+|..
T Consensus 131 ---------------------~lp~r~VdvVlSDMapnaT--Gvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 131 ---------------------ALPNRPVDVVLSDMAPNAT--GVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred ---------------------hCCCCcccEEEeccCCCCc--CcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 0124789999999866532 22110 00011 1234455566688999999999876
Q ss_pred ChhHHHHHHHHHHHhccceEEeeec----CCccEEEEEecCCC
Q 004164 693 SQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLSSES 731 (771)
Q Consensus 693 ~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~~~~~ 731 (771)
+.+. .+..+|+++|..|..++.. +.....++|.+-+.
T Consensus 188 ~e~~--~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~ 228 (232)
T KOG4589|consen 188 SEEA--LLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKG 228 (232)
T ss_pred CchH--HHHHHHHHHhhhcEeeCCccccccccceeeeeeeccC
Confidence 6553 4678999999999888753 44567888887653
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.06 Score=51.13 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=44.3
Q ss_pred EEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEc
Q 004164 545 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHIT 598 (771)
Q Consensus 545 vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~ 598 (771)
+++||.|.|..+.++....|..+|.+||.+|.+.+.+++.+....-++++++..
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~ 55 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNA 55 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 789999999999999999888899999999999999999874321134666654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.11 Score=52.92 Aligned_cols=104 Identities=9% Similarity=-0.008 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-----CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCC
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDET 134 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-----g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~s 134 (771)
+.+.|+|+|.-.|..+..+++. +.++|++||+.-..............++++++++|..+.. .....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4689999999999888777652 3479999999543332111111112378999999998752 11233
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..+|+.-..-.+ . . +.+.|+....++++|+++|+.+.
T Consensus 112 ~vlVilDs~H~~-~--h-----vl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 112 PVLVILDSSHTH-E--H-----VLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SEEEEESS-----S--S-----HHHHHHHHHHT--TT-EEEETSH
T ss_pred ceEEEECCCccH-H--H-----HHHHHHHhCccCCCCCEEEEEec
Confidence 446664322111 1 1 45778889999999999988654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.028 Score=54.25 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcC----CCCcEEEEeecCCC--CCCCCCccEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSM--QFMDETFDVI 138 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~----~~~i~~~~~D~~~l--~~~~~sFDlV 138 (771)
..+.+|||+|.|--.++-.|... ....|...|-++..++...+..... ...+.....+...- ......||+|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 45679999999966655444332 4468999999999998775543221 11222222222211 2334689999
Q ss_pred EeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh
Q 004164 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192 (771)
Q Consensus 139 i~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~ 192 (771)
++..++..- + ..+.+++.|+++|+|.|.-++...-....++.+..+.
T Consensus 108 laADClFfd---E----~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~ 154 (201)
T KOG3201|consen 108 LAADCLFFD---E----HHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEV 154 (201)
T ss_pred EeccchhHH---H----HHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHH
Confidence 988877641 1 2568999999999999998777765444444444444
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.084 Score=54.87 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=33.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL 580 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~v 580 (771)
....+|+||+|+|.++.+|.+. +..+|++||+++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 4467999999999999999987 34589999999977754
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.15 Score=50.78 Aligned_cols=113 Identities=9% Similarity=0.080 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHH------HHHHHHhh-cCCCCcEEEEeecCCCCCCCCCccE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVI------SDMLRRNV-RDRSDMRWRVMDMTSMQFMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i------~~~~~~~~-~~~~~i~~~~~D~~~l~~~~~sFDl 137 (771)
+++.+|+|+=.|.|.++.-+... |. +.|++.-..+... ..+..... ....|...+-.+...+. +.+..|+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 68999999999999999999876 32 4677765444311 11111110 11234555555555555 4466788
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++....-|-+....-......++...+++.|||||.|++.+..
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8764433322211111223789999999999999999998743
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.1 Score=56.77 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=71.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-------CCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeeEEEcchHHHHHhhccC
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-------MPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSS 610 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-------~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~~r~~v~i~Dg~~~l~~~~~~ 610 (771)
....+|++-.+|+|.+...+... .+...+.++|+|+..+.+|+-.+-+. ......+..+|.+.--...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~--- 121 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI--- 121 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT---
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc---
Confidence 34457999999999876655553 36679999999999999998765222 1233568888875431110
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCC----------CCCCCCcCCcCcccHHHHHHHHHcc
Q 004164 611 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV-DSPD----------SSSGMTCPAADFVEGSFLLTVKDAL 679 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~-~s~d----------~~~g~s~pp~~f~~~~fl~~~~~~L 679 (771)
...+||+||... +... ..-....++..-.+..|++.+.+.|
T Consensus 122 ----------------------------~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L 173 (311)
T PF02384_consen 122 ----------------------------KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLL 173 (311)
T ss_dssp ----------------------------ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTE
T ss_pred ----------------------------cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhc
Confidence 136799999843 1111 0000001222233456999999999
Q ss_pred CCCcEEEEEe
Q 004164 680 SEQGLFIVNL 689 (771)
Q Consensus 680 ~~~Gilv~Nl 689 (771)
+++|.+++=+
T Consensus 174 k~~G~~~~Il 183 (311)
T PF02384_consen 174 KPGGRAAIIL 183 (311)
T ss_dssp EEEEEEEEEE
T ss_pred ccccceeEEe
Confidence 9999877654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.29 Score=53.64 Aligned_cols=121 Identities=11% Similarity=0.160 Sum_probs=89.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
.....|+++=.|-|..+.-+...-. .+|.++||+|.-++..++..-+.. .+++..+.||+.++..+.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~----------- 254 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL----------- 254 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-----------
Confidence 3467899998888866555555532 359999999999999999986642 456999999999997663
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHH
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 698 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 698 (771)
..+|-||+-... .+.+|+..+.++|+++|++-+-...++....+
T Consensus 255 ----------------------~~aDrIim~~p~--------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~ 298 (341)
T COG2520 255 ----------------------GVADRIIMGLPK--------------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE 298 (341)
T ss_pred ----------------------ccCCEEEeCCCC--------------cchhhHHHHHHHhhcCcEEEEEeccchhhccc
Confidence 358999982211 34789999999999999999877777665433
Q ss_pred HHHHHHHHhc
Q 004164 699 MVISRMKMVF 708 (771)
Q Consensus 699 ~v~~~l~~vF 708 (771)
.....++...
T Consensus 299 ~~~~~i~~~~ 308 (341)
T COG2520 299 RPEKRIKSAA 308 (341)
T ss_pred chHHHHHHHH
Confidence 3444554444
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.23 Score=53.76 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=53.8
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
..+++.=+|+|+-+..+.+.+|..+|.++|.||.+++.|++.+. ...+|++++.++-.++...+.
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~-~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS-DFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh-hcCCcEEEEeCCHHHHHHHHH
Confidence 46888888999888888888777899999999999999998763 124699999999998866553
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.25 Score=53.01 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=77.7
Q ss_pred CCCcEEEEecc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc----CCCC--CCCeeEEEcchHHH-HHhhccCCc
Q 004164 541 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQ--DKSLKVHITDGIKF-VREMKSSSA 612 (771)
Q Consensus 541 ~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F----g~~~--~~r~~v~i~Dg~~~-l~~~~~~~~ 612 (771)
....++++|+| ||-|..+..... ..+.++||-++-++-|++.. +... .=...++.+|-..- +.+.-
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~---- 190 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL---- 190 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc----
Confidence 34568899999 667877776665 47999999999999998765 2110 11357777776532 12211
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc----HHHHHHHHHccCCCcEEEEE
Q 004164 613 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~----~~fl~~~~~~L~~~Gilv~N 688 (771)
+..+.+||+|=+-. |-+-.|.+ .-+|+++.++|+|||+|+-.
T Consensus 191 ------------------------e~~dp~fDivScQF----------~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 191 ------------------------EFKDPRFDIVSCQF----------AFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred ------------------------cCCCCCcceeeeee----------eEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 11234588874311 11334443 34889999999999999987
Q ss_pred eccCChhHHHHHHHHHHHh
Q 004164 689 LVSRSQATKDMVISRMKMV 707 (771)
Q Consensus 689 l~~~~~~~~~~v~~~l~~v 707 (771)
+.. .. -++.+|++.
T Consensus 237 iPd--sd---~Ii~rlr~~ 250 (389)
T KOG1975|consen 237 IPD--SD---VIIKRLRAG 250 (389)
T ss_pred cCc--HH---HHHHHHHhc
Confidence 632 22 356666655
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.37 Score=53.43 Aligned_cols=102 Identities=23% Similarity=0.204 Sum_probs=74.0
Q ss_pred cEEEEecc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEc-chHHHHHhhccCCcccccccccc
Q 004164 544 KAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHIT-DGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 544 ~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~-Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
+|+|+|.| -|.++..+.+.++..+|.++|+++.=++.|+++++.. .+..... |...-+.+..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t------------- 234 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELT------------- 234 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHh-------------
Confidence 89999999 6777788888888889999999999999999998752 1111111 4444444433
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCCh
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 694 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 694 (771)
.+..+|++|- .++ ....++.+.+.++++|.+++.-+....
T Consensus 235 -----------------~g~g~D~vie--~~G--------------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 235 -----------------GGRGADVVIE--AVG--------------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -----------------CCCCCCEEEE--CCC--------------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 1246999987 222 256899999999999999976655433
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.3 Score=53.36 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=78.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...++|+||.+.|+.+..|.+.. .+|++||..|.--. +..+++++.+.+||+.|...
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~-------L~~~~~V~h~~~d~fr~~p~-------------- 267 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQS-------LMDTGQVEHLRADGFKFRPP-------------- 267 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHh-------hhCCCCEEEEeccCcccCCC--------------
Confidence 45689999999999999999884 59999996663322 23578999999999998432
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCC--cEEEEEeccCCh---h
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVNLVSRSQ---A 695 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~--Gilv~Nl~~~~~---~ 695 (771)
...+|++++|+-.. | ...++.+.+-|..| .-+|+|+=-.-. +
T Consensus 268 -------------------~~~vDwvVcDmve~---------P-----~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~ 314 (357)
T PRK11760 268 -------------------RKNVDWLVCDMVEK---------P-----ARVAELMAQWLVNGWCREAIFNLKLPMKKRYE 314 (357)
T ss_pred -------------------CCCCCEEEEecccC---------H-----HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHH
Confidence 25699999998554 2 35667777777554 578888743322 2
Q ss_pred HHHHHHHHHHHhc
Q 004164 696 TKDMVISRMKMVF 708 (771)
Q Consensus 696 ~~~~v~~~l~~vF 708 (771)
.....++.+.+.+
T Consensus 315 ~v~~~l~~i~~~l 327 (357)
T PRK11760 315 EVRQCLELIEEQL 327 (357)
T ss_pred HHHHHHHHHHHHH
Confidence 2334455555555
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.17 Score=56.10 Aligned_cols=128 Identities=13% Similarity=0.190 Sum_probs=75.2
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 623 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 623 (771)
++|++=+|.|.++..|...+ .+|.+||+++..++.|++...+..-++++++.+++-++............+.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~------ 270 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLK------ 270 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGG------
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhh------
Confidence 79999999999988898876 5899999999999999999855444679999999887754433100000000
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHH
Q 004164 624 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISR 703 (771)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~ 703 (771)
........+|+||+|- |..|+ +..+++.+.+ +. - ++-+.|....+.+. +..
T Consensus 271 -----------~~~~~~~~~d~vilDP----PR~G~--------~~~~~~~~~~-~~---~-ivYvSCnP~tlaRD-l~~ 321 (352)
T PF05958_consen 271 -----------GIDLKSFKFDAVILDP----PRAGL--------DEKVIELIKK-LK---R-IVYVSCNPATLARD-LKI 321 (352)
T ss_dssp -----------GS-GGCTTESEEEE-------TT-S--------CHHHHHHHHH-SS---E-EEEEES-HHHHHHH-HHH
T ss_pred -----------hhhhhhcCCCEEEEcC----CCCCc--------hHHHHHHHhc-CC---e-EEEEECCHHHHHHH-HHH
Confidence 0001124699999963 23343 4777777764 32 2 34455655555554 344
Q ss_pred HHHhc
Q 004164 704 MKMVF 708 (771)
Q Consensus 704 l~~vF 708 (771)
|.+-|
T Consensus 322 L~~~y 326 (352)
T PF05958_consen 322 LKEGY 326 (352)
T ss_dssp HHCCE
T ss_pred HhhcC
Confidence 55544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.22 Score=51.24 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC---CCCCCccEE
Q 004164 64 PTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---FMDETFDVI 138 (771)
Q Consensus 64 ~~~~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~---~~~~sFDlV 138 (771)
...+|+.+||-+|+++|....+..+. |. .-|+++++|+-.=.++... ++.++|+--+.-|+.... ..-.-.|+|
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nm-AkkRtNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINM-AKKRTNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHH-hhccCCceeeeccCCCchheeeeeeeEEEE
Confidence 44579999999999999998888886 33 5699999998665544332 345678888888887631 122356666
Q ss_pred EeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 139 i~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++. +..++ ..+-+.-+.+..||+||-|++.--
T Consensus 231 FaD-----vaqpd----q~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 231 FAD-----VAQPD----QARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred ecc-----CCCch----hhhhhhhhhhhhhccCCeEEEEEe
Confidence 642 12222 255666788899999999988653
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.79 Score=47.64 Aligned_cols=103 Identities=19% Similarity=0.126 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC---CCCccEEEeccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM---DETFDVILDKGG 143 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~---~~sFDlVi~~~~ 143 (771)
.+.+||-+|=+-- .+..++-. ..++|+.+|+++..++...+.+.+.+.+++.+..|+.+- +| .++||+++.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~-LP~~~~~~fD~f~T--- 118 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDP-LPEELRGKFDVFFT--- 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccccc-CCHHHhcCCCEEEe---
Confidence 5789999995543 23333333 356999999999999988877777776799999999873 33 379999994
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|......+.-++......||..|......++
T Consensus 119 -----DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 119 -----DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp --------SSHHHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred -----CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 44444556889999999999976644454554
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.11 Score=55.11 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=72.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccc----
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATD---- 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~---- 614 (771)
..+.+|||=|.|.|-|+.-+... +..+++.|.+--|+=...--++. .+.+..+++ -|+....+....+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~-----Pf~~~~sn~~~~~dqlr 127 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIY-----PFVHSFSNQKSREDQLR 127 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEe-----cceecccCCCCHHHhCC
Confidence 45679999999999999988888 35999999999998544322232 223344443 2332221111100
Q ss_pred --ccccccccc------cccCCCCCCCCCCCCC--CCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcE
Q 004164 615 --EMSVVHGNE------ITSNNTRSCNGNCTAS--NARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL 684 (771)
Q Consensus 615 --~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gi 684 (771)
..+.+++.. +=+...++.......+ ..+||+|+.= +=-|....+ .++++.+.++|+|||+
T Consensus 128 ~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFIDTA~Ni---------~~Yi~tI~~lLkpgG~ 197 (270)
T PF07942_consen 128 PVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFIDTAENI---------IEYIETIEHLLKPGGY 197 (270)
T ss_pred ceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEeechHHH---------HHHHHHHHHHhccCCE
Confidence 011111111 0011222222222222 4689998742 222322223 7899999999999994
Q ss_pred EEEEe
Q 004164 685 FIVNL 689 (771)
Q Consensus 685 lv~Nl 689 (771)
-+|+
T Consensus 198 -WIN~ 201 (270)
T PF07942_consen 198 -WINF 201 (270)
T ss_pred -EEec
Confidence 5576
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.21 Score=51.02 Aligned_cols=98 Identities=23% Similarity=0.358 Sum_probs=70.7
Q ss_pred EEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 545 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 545 vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
|++||+-=|.||.+|.+...-.++.++||.+.=++.|++.. |+ .+++.++.+||++-+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~~~-------------- 64 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLKPG-------------- 64 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--GG--------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccCCC--------------
Confidence 57899999999999999987779999999999999999886 54 579999999999976542
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...|.|++ .|| ..-+-.++|+.....+...--||+.=
T Consensus 65 -------------------e~~d~ivI--------AGM----GG~lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 65 -------------------EDVDTIVI--------AGM----GGELIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp -------------------G---EEEE--------EEE-----HHHHHHHHHHTGGGGTT--EEEEEE
T ss_pred -------------------CCCCEEEE--------ecC----CHHHHHHHHHhhHHHhccCCeEEEeC
Confidence 23688888 233 12245788888888887766788754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.17 Score=50.65 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=69.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCc---------EEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVG---------IEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~---------i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
....+++-=+|+|+++.-.....++.. +.++|+|+.+++.|++.+ |+ ...+.+...|+.++- ..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~--~~~i~~~~~D~~~l~--~~ 103 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV--EDYIDFIQWDARELP--LP 103 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE--GGGGG--GT
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--CCceEEEecchhhcc--cc
Confidence 345799999999999866555555544 899999999999999987 44 456889999998763 11
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc---CcccHHHHHHHHHccCCCcEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA---DFVEGSFLLTVKDALSEQGLF 685 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~---~f~~~~fl~~~~~~L~~~Gil 685 (771)
...+|+|+.|.-= |...... .-+-..|++.+++.|++..++
T Consensus 104 -------------------------------~~~~d~IvtnPPy-----G~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 104 -------------------------------DGSVDAIVTNPPY-----GRRLGSKKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp -------------------------------TSBSCEEEEE--S-----TTSHCHHHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred -------------------------------cCCCCEEEECcch-----hhhccCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 2579999997522 3222221 122356788888888884344
Q ss_pred E
Q 004164 686 I 686 (771)
Q Consensus 686 v 686 (771)
+
T Consensus 148 l 148 (179)
T PF01170_consen 148 L 148 (179)
T ss_dssp E
T ss_pred E
Confidence 3
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.45 Score=51.27 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=44.8
Q ss_pred CCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcC---CCCcEEEEeecCC-----CCCCCCCccEE
Q 004164 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMTS-----MQFMDETFDVI 138 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~---~~~i~~~~~D~~~-----l~~~~~sFDlV 138 (771)
.-++||||||.+..-..|... |. +++|+|+++..++.|++..... ..+|+++...-.. +..+++.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 568999999999775444433 66 9999999999999987766544 2467776543221 12234689999
Q ss_pred Eecccccccc
Q 004164 139 LDKGGLDALM 148 (771)
Q Consensus 139 i~~~~l~~l~ 148 (771)
+|+-.+|.-.
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9999888743
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.26 Score=50.19 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=52.7
Q ss_pred CCCcEEEEecccc-HHHHH---HHHhCCCCcEEEEEcCHHHH-HHHHhhcCCCCCCCeeEEEcchHH--HHHhhccCCcc
Q 004164 541 KSVKAVVIGLGAG-LLPMF---LHECMPFVGIEAVELDLTML-NLAEDYFGFTQDKSLKVHITDGIK--FVREMKSSSAT 613 (771)
Q Consensus 541 ~~~~vLviGlG~G-~l~~~---L~~~~p~~~i~~VEiD~~v~-~vA~~~Fg~~~~~r~~v~i~Dg~~--~l~~~~~~~~~ 613 (771)
+|..|+.+|.--| ++..+ +....+..+|.+||||..-. ..|.+.-.+ .+|++++.||..+ .+.....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~--~~rI~~i~Gds~d~~~~~~v~~---- 105 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM--SPRITFIQGDSIDPEIVDQVRE---- 105 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG------TTEEEEES-SSSTHHHHTSGS----
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc--cCceEEEECCCCCHHHHHHHHH----
Confidence 6788999999654 44433 22233677999999975433 334443333 5899999999873 3333220
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 614 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
........+||.|.+..-. + -..-|+....++++|+.+||
T Consensus 106 -----------------------~~~~~~~vlVilDs~H~~~---------h--vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 106 -----------------------LASPPHPVLVILDSSHTHE---------H--VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp -----------------------S----SSEEEEESS----S---------S--HHHHHHHHHHT--TT-EEEE
T ss_pred -----------------------hhccCCceEEEECCCccHH---------H--HHHHHHHhCccCCCCCEEEE
Confidence 0112456688887653311 1 15557779999999999986
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.22 Score=52.03 Aligned_cols=86 Identities=10% Similarity=0.029 Sum_probs=60.7
Q ss_pred HHHhhCCCCCCCCC--eEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC------C----CCcEEEEee
Q 004164 57 LISLIGAPTSSPPP--QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------R----SDMRWRVMD 124 (771)
Q Consensus 57 l~~~l~~~~~~~~~--~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~------~----~~i~~~~~D 124 (771)
|.+.+.. +++. +|||+-+|.|..+..++..|+ .|+++|-++.+.......+... . .+++++.+|
T Consensus 78 l~kAvgl---k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 78 VAKAVGI---KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHhCC---CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4444442 3455 999999999999999999998 6999999998877555443331 1 357888888
Q ss_pred cCCC-CCCCCCccEEEecccccc
Q 004164 125 MTSM-QFMDETFDVILDKGGLDA 146 (771)
Q Consensus 125 ~~~l-~~~~~sFDlVi~~~~l~~ 146 (771)
..+. .-...+||+|+.--.+.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 7664 212247999996544433
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.2 Score=51.00 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhc
Q 004164 554 LLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 554 ~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
....|..++ ..|.+|||||.-+..||... |. .+|+++++||-++....+.
T Consensus 108 ntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI--~~rItFI~GD~ld~~~~lq 160 (263)
T KOG2730|consen 108 NTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGV--PDRITFICGDFLDLASKLK 160 (263)
T ss_pred hHHHHHHhC---CeEEEEeccHHHHHHHhccceeecC--CceeEEEechHHHHHHHHh
Confidence 343444443 36999999999999999887 65 3399999999999877765
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.34 Score=53.70 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=104.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....|||.+..--|.=+.+++.++.+. .|.+-|.+..-+..-+..+ |+ ...-+...||.+|-++.-
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---~ntiv~n~D~~ef~~~~~------- 309 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---TNTIVSNYDGREFPEKEF------- 309 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---CceEEEccCccccccccc-------
Confidence 456799999999887778888888664 8888888887777665554 54 457788899997732211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC--------------cccHHHHHHHHHccCC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD--------------FVEGSFLLTVKDALSE 681 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~--------------f~~~~fl~~~~~~L~~ 681 (771)
...||-|++|+-.+.. |+-.-++. -+..+.|..+.+++++
T Consensus 310 ------------------------~~~fDRVLLDAPCSGt--gvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~ 363 (460)
T KOG1122|consen 310 ------------------------PGSFDRVLLDAPCSGT--GVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKA 363 (460)
T ss_pred ------------------------CcccceeeecCCCCCC--cccccccccccchhHHHHHHhHHHHHHHHHHHHhhccC
Confidence 2379999999855421 22222222 2456788889999999
Q ss_pred CcEEEEEeccCChhHHHHHHHHHHHhccceEEeee
Q 004164 682 QGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQL 716 (771)
Q Consensus 682 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~ 716 (771)
||+||....+-..+..+.+++-.-.-|+++-..+.
T Consensus 364 GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~ 398 (460)
T KOG1122|consen 364 GGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPT 398 (460)
T ss_pred CcEEEEEeeecchhhhHHHHHHHHHhCCceEeccc
Confidence 99999999888888889999998888988766654
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.37 Score=51.51 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=62.4
Q ss_pred CcEEEEeccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.-.++.=+|+|+-+..+.+.+|.. +++++|-||..++.|++.+- .-++|++++.+.-..+-.....
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~-~~~~r~~~v~~~F~~l~~~l~~------------ 91 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK-EFDGRVTLVHGNFANLAEALKE------------ 91 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh-ccCCcEEEEeCcHHHHHHHHHh------------
Confidence 456777889999999888888865 59999999999999999872 2358999998876655444331
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCC
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSP 653 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~ 653 (771)
....++|=|++|+--+
T Consensus 92 ----------------~~i~~vDGiL~DLGVS 107 (314)
T COG0275 92 ----------------LGIGKVDGILLDLGVS 107 (314)
T ss_pred ----------------cCCCceeEEEEeccCC
Confidence 1136799999998433
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.16 Score=57.68 Aligned_cols=123 Identities=16% Similarity=0.210 Sum_probs=78.5
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcC--CHHHHHHHHHHhhcCCCCcEEEEeec-CCCCCCCCCccEEEeccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDF--SKVVISDMLRRNVRDRSDMRWRVMDM-TSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDi--S~~~i~~~~~~~~~~~~~i~~~~~D~-~~l~~~~~sFDlVi~~~~l~ 145 (771)
-..|+|...|.|.++..|.+.+. =|.+|=. .+..+...-.| + -+- .-.|. +.++.-..+||+|.+.+.|.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~V-WVMNVVP~~~~ntL~vIydR----G-LIG-~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPV-WVMNVVPVSGPNTLPVIYDR----G-LIG-VYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccCCc-eEEEecccCCCCcchhhhhc----c-cch-hccchhhccCCCCcchhheehhhhhh
Confidence 45899999999999999988764 2333321 12122111111 1 011 11222 23444458999999999888
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh-ccCcEEEEeecC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIP 204 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~i~ 204 (771)
...+.- .+..++-|+-|+|+|||.+++-+.. .+...+...+ ...|...+....
T Consensus 439 ~~~~rC----~~~~illEmDRILRP~G~~iiRD~~--~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 439 LYKDRC----EMEDILLEMDRILRPGGWVIIRDTV--DVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred hhcccc----cHHHHHHHhHhhcCCCceEEEeccH--HHHHHHHHHHHhCcceEEEEecC
Confidence 765432 2789999999999999999987754 4444444433 337988887653
|
; GO: 0008168 methyltransferase activity |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.52 Score=50.47 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF 585 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~F 585 (771)
=.|.+||++|.|.|+....+...++. .++++||.++.++++|+.-+
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 46789999999999988888888874 48999999999999998876
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.12 Score=46.81 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=33.4
Q ss_pred HHHHHHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcC
Q 004164 53 LRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF 99 (771)
Q Consensus 53 l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDi 99 (771)
+...|..+... ....+.....|||||||.+..-|...|+ .=.|+|.
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 33445554443 1123567899999999999999999998 6788885
|
; GO: 0008168 methyltransferase activity |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 771 | ||||
| 2pxx_A | 215 | Human Putative Methyltransferase Mgc2408 Length = 2 | 2e-22 |
| >pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408 Length = 215 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 771 | |||
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 7e-51 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 8e-23 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 4e-15 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 6e-14 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 6e-14 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 9e-14 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-13 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 8e-13 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 9e-13 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 2e-12 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 4e-12 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 2e-11 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 2e-11 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 3e-11 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 1e-10 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 2e-10 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 2e-10 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 2e-10 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 2e-10 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 5e-10 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 8e-10 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 9e-10 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 1e-09 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 1e-09 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 2e-09 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 2e-09 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 3e-09 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 4e-09 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 4e-09 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 5e-09 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 5e-09 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 9e-09 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 1e-08 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 1e-08 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 2e-08 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-08 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 3e-08 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 4e-08 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 6e-08 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 1e-07 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 1e-07 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 2e-07 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 5e-07 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 8e-07 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 1e-06 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 1e-06 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 2e-06 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 3e-06 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 5e-06 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 6e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 9e-06 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 9e-06 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 1e-05 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 1e-05 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 1e-05 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 2e-05 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 3e-05 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 4e-05 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 5e-05 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 6e-05 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 9e-05 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 1e-04 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 2e-04 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 2e-04 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 2e-04 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 2e-04 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 4e-04 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 4e-04 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 4e-04 |
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 7e-51
Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+ E WD+ + ++W+ ++ R L + P +ILV GCGNS LS
Sbjct: 3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL-----RPEDRILVLGCGNSALS 57
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
L+ GF +T+VD+S VV++ M +RW MD+ + F +FDV+L+KG
Sbjct: 58 YELFLGGFPNVTSVDYSSVVVAAMQACY-AHVPQLRWETMDVRKLDFPSASFDVVLEKGT 116
Query: 144 LDALMEPELGHKLG--------NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFG 195
LDAL+ E +Q LSEV R+L GG+F+ +T A H + + +G
Sbjct: 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYG 176
Query: 196 WKMSVHAIPQKSSSEPSLQTFMVVADK 222
W + + + K
Sbjct: 177 WSLRHATY------GSGFHFHLYLMHK 197
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 8e-23
Identities = 32/194 (16%), Positives = 60/194 (30%), Gaps = 44/194 (22%)
Query: 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD 599
++ +G GA + + + P VELD + L+ ++F + +K+ + D
Sbjct: 88 ASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDD 147
Query: 600 GIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 659
+ A D++I DV +
Sbjct: 148 ARMVAES-------------------------------FTPASRDVIIRDVFAGAI---- 172
Query: 660 TCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ-ATKDMVISRMKMVFNHLF------ 712
+F F L+ GL++ N S ++ M VF H+
Sbjct: 173 --TPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPP 230
Query: 713 CLQLEEDVNLVLFG 726
L+ N++L G
Sbjct: 231 MLKGRRYGNIILMG 244
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 4e-15
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 14/136 (10%)
Query: 45 EWYAEW----PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFS 100
DP LI + IL G G R + HL G I ++ +
Sbjct: 14 FDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQ-IEGLEPA 72
Query: 101 KVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQY 160
+ ++ + + + +T + + + +L L + EL
Sbjct: 73 ----TRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELP-----DA 123
Query: 161 LSEVKRLLKSGGKFVC 176
L ++ ++ GG +
Sbjct: 124 LVALRMAVEDGGGLLM 139
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 6e-14
Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 18/155 (11%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
+ W+K + W ++ L+ +S P + LVPGCG +
Sbjct: 32 EEGGWEKCWEEEITP----WDQGRAT--PLIVHLVDT-SSLPLGRALVPGCGGGHDVVAM 84
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRS---DMRWRVMDMTSMQFMDETFDVILDKGG 143
+ +D S+ + + D+ + + E FD+I D
Sbjct: 85 ASPERF-VVGLDISESAL-AKANETYGSSPKAEYFSFVKEDVFTWRP-TELFDLIFDYVF 141
Query: 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
A+ + + + LLK G+ + L
Sbjct: 142 FCAIEPE-----MRPAWAKSMYELLKPDGELITLM 171
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 6e-14
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 15/139 (10%)
Query: 43 SFEWYAE-WPQLRDPLISLIGAPT---SSPPP--QILVPGCGNSRLSEHLYDAGFHGITN 96
E YA+ W L + G + P +IL GCG R+ +L G +
Sbjct: 15 HSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHD-VLG 73
Query: 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKL 156
D ++ +D + RW V D++ Q + FD+I+ G + + +
Sbjct: 74 TDLD----PILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPA 129
Query: 157 GNQYLSEVKRLLKSGGKFV 175
L+ + R L + G+ V
Sbjct: 130 ----LANIHRALGADGRAV 144
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 9e-14
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ + + F +S E+ + L L+ + ++L CG S L D
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLED 58
Query: 89 AGFHGITNVDFSKVVISDML---RRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGL 144
GF + VD S+ DM+ R + R S++ + V D + F D+TFD ++ +
Sbjct: 59 YGFE-VVGVDISE----DMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 113
Query: 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKM 198
EL NQ EV+R+LK GKF+ L L P+ + +
Sbjct: 114 VHFEPLEL-----NQVFKEVRRVLKPSGKFIMYF----TDLRELLPRLKESLVV 158
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 1e-13
Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 14/163 (8%)
Query: 20 QTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGN 79
+ + F E+ +K + + W I ++L GCG+
Sbjct: 5 ECMTKFNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGD 64
Query: 80 SRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQFMDETFDV 137
+ L G+ VD S M++ + + D+ + D++S+ F +E F+
Sbjct: 65 GYGTYKLSRTGYK-AVGVDIS----EVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEA 119
Query: 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
I+ L+ EP + L+E+KR+LKS G L
Sbjct: 120 IMAINSLEWTEEPL-------RALNEIKRVLKSDGYACIAILG 155
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 8e-13
Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 24/157 (15%)
Query: 31 WDKFFTIRGIGDSFE---WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLY 87
WD+ F+ E + P +IL G R + L
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQI-------------PQGKILCLAEGEGRNACFLA 48
Query: 88 DAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147
G+ +T VD S V ++ + + ++ + + ++ I+ +
Sbjct: 49 SLGYE-VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVS---IFCH 104
Query: 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184
+ L + +V + LK GG F+ A +
Sbjct: 105 LPSSLRQQ----LYPKVYQGLKPGGVFILEGFAPEQL 137
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 9e-13
Identities = 30/132 (22%), Positives = 43/132 (32%), Gaps = 14/132 (10%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
YAE L +G +IL GCG +E + AGF + D S
Sbjct: 22 TAYAERQPRSATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGFD-VDATDGSP--- 75
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164
++ R R M + + +D + L + EL L +
Sbjct: 76 -ELAAE-ASRRLGRPVRTMLFHQLDA-IDAYDAVWAHACLLHVPRDELA-----DVLKLI 127
Query: 165 KRLLKSGGKFVC 176
R LK GG F
Sbjct: 128 WRALKPGGLFYA 139
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 2e-12
Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 32/174 (18%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
++++F + F + +E ++ L P + + G G R + L
Sbjct: 22 NEYERWFLVH----RFAYLSELQAVKCLL----------PEGRGVEIGVGTGRFAVPLKI 67
Query: 89 AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148
V+ S+ M R R + ++ DE+FD L + +
Sbjct: 68 K-----IGVEPSE----RMAEI-ARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVD 116
Query: 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 202
+PE + L E R+LK GG + + LG + K + +A
Sbjct: 117 DPE-------RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNA 163
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 4e-12
Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125
S+ +L G G ++ + ++ S + + + + + D+
Sbjct: 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDI 80
Query: 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185
+ F DE+ + G + + + ++ + + E+KR+LK GG L
Sbjct: 81 RKLPFKDESMSFVYSYGTIFHMRKNDV-----KEAIDEIKRVLKPGGLACINFLTTKD-- 133
Query: 186 GLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVAD 221
++ G K+ Q E + +++ + +
Sbjct: 134 ----ERYNKGEKIGEGEFLQLERGEKVIHSYVSLEE 165
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 23/140 (16%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR----------NVRDRSDMRWRVMDM 125
GCG+ ++S L G+ +T +D + + +R N + ++V +
Sbjct: 38 GCGSGKISLELASKGYS-VTGIDINS----EAIRLAETAARSPGLNQKTGGKAEFKVENA 92
Query: 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185
+S+ F D +FD + + L ++ +P+ ++ + EV R+LK G +
Sbjct: 93 SSLSFHDSSFDFAVMQAFLTSVPDPKER----SRIIKEVFRVLKPGAYLYLVEF--GQNW 146
Query: 186 GLLFPKFRFGWKMSVHAIPQ 205
L + R+ +
Sbjct: 147 HLKLYRKRYLH--DFPITKE 164
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 24/152 (15%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
E +D + E + + ++L CG + L +
Sbjct: 10 EYYDTIYR-----RRIERVKAEIDFVEEIFKEDAKR---EVRRVLDLACGTGIPTLELAE 61
Query: 89 AGFHGITNVDFSKVVISDML---RRNVRDRS-DMRWRVMDMTSMQFMDETFDVILDKGG- 143
G+ + +D + +ML RR ++R+ + + D+ + F FD +
Sbjct: 62 RGYE-VVGLDLHE----EMLRVARRKAKERNLKIEFLQGDVLEIAF-KNEFDAVTMFFST 115
Query: 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
+ E +L + S+V LK GG F+
Sbjct: 116 IMYFDEEDL-----RKLFSKVAEALKPGGVFI 142
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 3e-11
Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 20/153 (13%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+D F I + + ++ + +L G G L+ L
Sbjct: 14 HTYDSFVQGEDIQYKEVF-----AHYEDILEDVVNK---SFGNVLEFGVGTGNLTNKLLL 65
Query: 89 AGFHGITNVDFSKVVISDMLRR-NVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147
AG + ++ S+ +M + + D S + + D I+ L
Sbjct: 66 AGRT-VYGIEPSR----EMRMIAKEKLPKEFSITEGDFLSFEV-PTSIDTIVSTYAFHHL 119
Query: 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
+ E +++ +LL GGK V
Sbjct: 120 TDDEKN-----VAIAKYSQLLNKGGKIVFADTI 147
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 1e-10
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125
P + L GCGN R S +L G+ + D + + I + R ++ RV+D+
Sbjct: 32 KPGKTLDLGCGNGRNSLYLAANGYD-VDAWDKNAMSI-ANVERIKSIENLDNLHTRVVDL 89
Query: 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
++ F D +D IL L L + ++ ++R K GG + +
Sbjct: 90 NNLTF-DRQYDFILSTVVLMFLEAKTIP-----GLIANMQRCTKPGGYNLIVA 136
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 14/125 (11%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127
P +L G G L G V+ S+ ML R + W +
Sbjct: 36 PGESLLEVGAGTGYWLRRLPYPQKVG---VEPSE----AMLAVGRRRAPEATWVRAWGEA 88
Query: 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGL 187
+ F E+FDV+L L+ + + E L E +R+L+ GG V L
Sbjct: 89 LPFPGESFDVVLLFTTLEFVEDVERV-------LLEARRVLRPGGALVVGVLEALSPWAA 141
Query: 188 LFPKF 192
L+ +
Sbjct: 142 LYRRL 146
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
+ ++ Q + L+ L+ P IL GCG +L+E + +G + D +
Sbjct: 37 DKHSFVWQYGEDLLQLLNP---QPGEFILDLGCGTGQLTEKIAQSGAE-VLGTDNA---- 88
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164
+ M+ + ++ + + V D + + D+ D + L + EPE ++ +
Sbjct: 89 ATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPE-------AAIASI 140
Query: 165 KRLLKSGGKFVCLTLA 180
+ LKSGG+FV
Sbjct: 141 HQALKSGGRFVAEFGG 156
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 14/128 (10%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127
P ++L G G + S L + GF + VD SK +ML R++
Sbjct: 54 NPCRVLDLGGGTGKWSLFLQERGFE-VVLVDPSK----EMLEVA-REKGVKNVVEAKAED 107
Query: 128 MQFMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186
+ F F+ +L G L + + SE++R+L G + L
Sbjct: 108 LPFPSGAFEAVLALGDVLSYVENKDKA-------FSEIRRVLVPDGLLIATVDNFYTFLQ 160
Query: 187 LLFPKFRF 194
+ K +
Sbjct: 161 QMIEKDAW 168
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 2e-10
Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 20/152 (13%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
++++ + + + EW +L+ L +L GCG + + G
Sbjct: 14 FEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQK-------TVLDLGCGFGWHCIYAAEHG 66
Query: 91 FHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148
+ +D S ML + + + + + + ++V+L L +
Sbjct: 67 AKKVLGIDLS----ERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122
Query: 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180
+ +V LKS G F+
Sbjct: 123 SFD-------DICKKVYINLKSSGSFIFSVEH 147
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 5e-10
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 20/140 (14%)
Query: 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101
+ + AEWP LR L + G +I+ GCG ++ G + +D S
Sbjct: 24 EGLDGAAEWPALRAMLPEVGGL-------RIVDLGCGFGWFCRWAHEHGASYVLGLDLS- 75
Query: 102 VVISDMLR--RNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQ 159
ML R + + + D+ + ++FD+ L + + +
Sbjct: 76 ---EKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA-------R 125
Query: 160 YLSEVKRLLKSGGKFVCLTL 179
V + L GG FV T
Sbjct: 126 LFRTVHQALSPGGHFVFSTE 145
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 8e-10
Identities = 23/155 (14%), Positives = 57/155 (36%), Gaps = 7/155 (4%)
Query: 32 DKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF 91
D T+ +++++ ++ A P ++L GCG R S +L G+
Sbjct: 84 DLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY 143
Query: 92 HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPE 151
+T+ D ++ I+ + ++ ++ + D+ + E +D I+ L
Sbjct: 144 D-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLNRER 201
Query: 152 LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186
+ + +K GG + + + +
Sbjct: 202 V-----PSIIKNMKEHTNVGGYNLIVAAMSTDDVP 231
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 9e-10
Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 37/190 (19%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENW-DKFFT-----IRGIGDSFEWYAEWPQLR 54
M + + + A LL ++G+ ++ D+ + D E+
Sbjct: 20 MSNQLERGPVRTPHADVLLASVGERGVLCDFYDEGAADTYRDLIQDADGTSEAREFATRT 79
Query: 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML------ 108
P +L G RL+ D G+ +T ++ S + +L
Sbjct: 80 GP-----------VSGPVLELAAGMGRLTFPFLDLGWE-VTALELS----TSVLAAFRKR 123
Query: 109 --RRNVRDRSDMRWRVMDMTSMQFMDETFD-VILDKGGLDALMEPELGHKLGNQYLSEVK 165
R DM++ D+ F V++ G ++ L E + + V+
Sbjct: 124 LAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADR-----RGLYASVR 177
Query: 166 RLLKSGGKFV 175
L+ GGKF+
Sbjct: 178 EHLEPGGKFL 187
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 28/146 (19%), Positives = 42/146 (28%), Gaps = 20/146 (13%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
+D F+ RG YA L+ SS +L CG EH
Sbjct: 12 YDLFYLGRGKD-----YAAEASDIADLVRSRTPEASS----LLDVACGTGTHLEHFTKEF 62
Query: 91 FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG-LDALME 149
++ S DML + D DM + F ++ + L
Sbjct: 63 GD-TAGLELS----EDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116
Query: 150 PELGHKLGNQYLSEVKRLLKSGGKFV 175
E ++ L+ GG V
Sbjct: 117 TEELGAA----VASFAEHLEPGGVVV 138
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 1e-09
Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 25/156 (16%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+D F + P + L + + +L G + HL
Sbjct: 20 SEYDATF-------VPYMDSAAPAALERLRAG------NIRGDVLELASGTGYWTRHLSG 66
Query: 89 AGFHGITNVDFSKVVISDMLRR-NVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147
+T +D S ++M+ ++ +R D+ D +D + L +
Sbjct: 67 LADR-VTALDGS----AEMIAEAGRHGLDNVEFRQQDLFDWTP-DRQWDAVFFAHWLAHV 120
Query: 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183
+ + V+ + GG + + +
Sbjct: 121 PDDRFE-----AFWESVRSAVAPGGVVEFVDVTDHE 151
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 17/167 (10%)
Query: 39 GIGDSFEWYAE-WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNV 97
IG + ++ + +I+L+ P I G G S L + G + V
Sbjct: 7 SIGKQYSQTRVPDIRIVNAIINLLNLP---KGSVIADIGAGTGGYSVALANQGLF-VYAV 62
Query: 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLG 157
+ S M ++ + W ++ D++ D ++ + E
Sbjct: 63 EPS----IVMRQQ-AVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKS---- 113
Query: 158 NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 204
E++R+++ G + L+ F F W+ ++ +P
Sbjct: 114 ---FQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLP 157
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 2e-09
Identities = 13/101 (12%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135
G G R++++L + ++ K ++ + +R + ++ + M + T+
Sbjct: 101 GAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGMPVGKFILASMETATLPPNTY 159
Query: 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
D+I+ + L + + ++ ++ L G
Sbjct: 160 DLIVIQWTAIYLTDADF-----VKFFKHCQQALTPNGYIFF 195
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 3e-09
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 20/143 (13%)
Query: 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFS 100
++ + L L P P ++L GCG + L IT++D S
Sbjct: 14 EALRLSEQAETLEKLLHHDTVYP---PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDIS 70
Query: 101 KVVISDML---RRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHK 155
+ L R N ++++ ++ S+ F D +FD I L+ L PE
Sbjct: 71 ----PESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPE---- 122
Query: 156 LGNQYLSEVKRLLKSGGKFVCLT 178
+ L +K++LK GG +
Sbjct: 123 ---EALKSLKKVLKPGGTITVIE 142
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 4e-09
Identities = 27/168 (16%), Positives = 44/168 (26%), Gaps = 22/168 (13%)
Query: 9 SSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSP 68
+ SS++A G+ +D + Y L+ +S
Sbjct: 2 AHSSATAGPQADYSGEIAEL--YDLVH-----QGKGKDYHREAADLAALVRRHSPKAAS- 53
Query: 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128
+L CG HL D+ + ++ S +DML R D DM
Sbjct: 54 ---LLDVACGTGMHLRHLADSFGT-VEGLELS----ADMLAIARRRNPDAVLHHGDMRDF 105
Query: 129 QFMDETFDVILDKGG-LDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
F + + L L + G V
Sbjct: 106 SL-GRRFSAVTCMFSSIGHLAGQAELDAA----LERFAAHVLPDGVVV 148
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 4e-09
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 19/166 (11%)
Query: 24 DFTSKENWDKFF--TIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSR 81
D + W++++ T+ W A + + +P ++ CGN
Sbjct: 12 DINVADAWEQYWNKTLVNSTPVL-WDANVERAVVVDLPRFE-LLFNPELPLIDFACGNGT 69
Query: 82 LSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSM----QFMDETF 135
++ L + +D S L +++ +R++D Q E
Sbjct: 70 QTKFLSQFFPR-VIGLDVS----KSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIG 124
Query: 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181
D + + + ++ LL G + L
Sbjct: 125 DANI----YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 5e-09
Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 31/166 (18%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLI---------SLIGAPTSSPPPQILVPGC 77
S + F ++ + R I S+ A + P IL G
Sbjct: 2 SLSEIKRKFD--------AVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGA 53
Query: 78 GNSRLSEHLYDAGFHG-ITNVDFSKVVISDML---RRNVRDRSDMRWRVMDMTSMQFMDE 133
G LS L + T VD S+ ML + R +++ D + F +E
Sbjct: 54 GTGLLSAFLMEKYPEATFTLVDMSE----KMLEIAKNRFRGNLKVKYIEADYSKYDF-EE 108
Query: 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179
+D+++ + L + + + +LK G F+ L
Sbjct: 109 KYDMVVSALSIHHLEDEDKK-----ELYKRSYSILKESGIFINADL 149
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 5e-09
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 19/142 (13%)
Query: 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVIS 105
+ LRD +++ + +L GCG + DA +D SK
Sbjct: 64 AGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK---- 119
Query: 106 DMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVK 165
++ + + + V + F D + D I+ + A E+
Sbjct: 120 VAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR---IYAP-----------CKAEELA 165
Query: 166 RLLKSGGKFVCLTLAESHVLGL 187
R++K GG + T H++ L
Sbjct: 166 RVVKPGGWVITATPGPRHLMEL 187
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 9e-09
Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 17/131 (12%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML---RRNVRDR-SDMRWRVM 123
P L G G R++ L G+ +D + ML R+ + ++
Sbjct: 39 EEPVFLELGVGTGRIALPLIARGYR-YIALDAD----AAMLEVFRQKIAGVDRKVQVVQA 93
Query: 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT-LAES 182
D ++ DE+ ++ + + L+E R+LK GG + AE+
Sbjct: 94 DARAIPLPDESVHGVIVVHLWHLVPDWPKV-------LAEAIRVLKPGGALLEGWDQAEA 146
Query: 183 HVLGLLFPKFR 193
L ++R
Sbjct: 147 SPEWTLQERWR 157
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 25/151 (16%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
+DK + Y +W L CG L+E+L
Sbjct: 10 YDKLI------RADVDYKKWSDFIIEKCVENNLVFDD----YLDLACGTGNLTENLCPKF 59
Query: 91 FHGITNVDFSKVVISDML---RRNVRDRS-DMRWRVMDMTSMQFMDETFDVILDKGG-LD 145
+ VD S+ +ML R + R D++++ + FD+I +
Sbjct: 60 KN-TWAVDLSQ----EMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTN 113
Query: 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
+++ + L +Y V LK GG F+
Sbjct: 114 YIIDSD---DL-KKYFKAVSNHLKEGGVFIF 140
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 16/114 (14%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDR---SDMRWR 121
+ +I GCG + L A + IT +D I ++ N ++
Sbjct: 45 TDDAKIADIGCGTGGQTLFL--ADYVKGQITGIDLFPDFI-EIFNENAVKANCADRVKGI 101
Query: 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
M ++ F +E D+I +G + + + ++E + LK GG
Sbjct: 102 TGSMDNLPFQNEELDLIWSEGAIYNIGFE--------RGMNEWSKYLKKGGFIA 147
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 30/172 (17%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ W R ++ I P ++L GCG L L D
Sbjct: 22 QAWIDAV--RHGAIESRRQVTDQ----AILLAILGR---QPERVLDLGCGEGWLLRALAD 72
Query: 89 AGFHGITNVDFSKVVISDML----RRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144
G VD ++ + + + + + +D+I
Sbjct: 73 RGIE-AVGVDGD----RTLVDAARAAGAGEVHLASYAQLAEAKVPV-GKDYDLIC---AN 123
Query: 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 196
AL+ ++ + LS ++ LL GG V TL H + ++ GW
Sbjct: 124 FALLHQDII-----ELLSAMRTLLVPGGALVIQTL---HPWSVADGDYQDGW 167
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDR---SDMRWR 121
+ I GCG + L AG +T +DF I D+ RN R + +
Sbjct: 45 TEKSLIADIGCGTGGQTMVL--AGHVTGQVTGLDFLSGFI-DIFNRNARQSGLQNRVTGI 101
Query: 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
V M + F +E D+I +G + + + L+E ++ LK GG
Sbjct: 102 VGSMDDLPFRNEELDLIWSEGAIYNIGFE--------RGLNEWRKYLKKGGYLA 147
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML----RRNVRDRSDMRWRVM 123
P +I GCG + L D + +T VD S +ML + + + + V
Sbjct: 33 PGKRIADIGCGTGTATLLLAD-HYE-VTGVDLS----EEMLEIAQEKAMETNRHVDFWVQ 86
Query: 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
DM ++ + + + L+ L + RLL GGK +
Sbjct: 87 DMRELELPEPVDAITILCDSLNYLQTEADVKQT----FDSAARLLTDGGKLL 134
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 4e-08
Identities = 23/158 (14%), Positives = 45/158 (28%), Gaps = 30/158 (18%)
Query: 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSE 84
+ I G + L+ ++L G ++
Sbjct: 7 HHHHHHMYVTSQIHAKGSDLAKLMQIAALK-------------GNEEVLDVATGGGHVAN 53
Query: 85 HLYDAGFHGITNVDFSKVVISDML---RRNVRDR--SDMRWRVMDMTSMQFMDETFDVIL 139
+ D ++ D+L R + + + D M F DE F ++
Sbjct: 54 AFAPFVKK-VVAFDLTE----DILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVT 108
Query: 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177
+ P +SE R+LK GG+ + +
Sbjct: 109 CRIAAHHFPNPASF-------VSEAYRVLKKGGQLLLV 139
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 6e-08
Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 8/119 (6%)
Query: 60 LIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-- 117
L P + L G G R+++ L F + VD ++ + + + +
Sbjct: 71 LREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGKRV 129
Query: 118 MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176
+ + +++DVI + + L + L ++L K L+ G V
Sbjct: 130 RNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHL-----AEFLRRCKGSLRPNGIIVI 183
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 24/163 (14%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ K Y + +I+ G + G G LS L
Sbjct: 11 KKGAKNMDEISKTLFAPIYPII---AENIINRFGIT----AGTCIDIGSGPGALSIALAK 63
Query: 89 AGFHGITNVDFSKVVISDML---RRNVRDR---SDMRWRVMDMTSMQFMDETFDVILDKG 142
I +DFSK M +N+ D ++ D+ ++ D D+I+ +G
Sbjct: 64 QSDFSIRALDFSK----HMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRG 119
Query: 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185
+ + E+ R+LKSGGK + L
Sbjct: 120 SVFFWEDVA-------TAFREIYRILKSGGKTYIGGGFGNKEL 155
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDML---RRNVRDR--SDMRWRVMDMTSMQF 130
G G + VD + +M+ +++ ++R++ S+ F
Sbjct: 29 GAGAGHTALAFSPYVQE-CIGVDAT----KEMVEVASSFAQEKGVENVRFQQGTAESLPF 83
Query: 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177
D++FD+I + + + + EV R+LK G+F+ +
Sbjct: 84 PDDSFDIITCRYAAHHFSDVR-------KAVREVARVLKQDGRFLLV 123
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 33/160 (20%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
W + IGD+ AE+ + L+ L+ ++L CG S L + G
Sbjct: 31 WQLY-----IGDTRSRTAEY---KAWLLGLLRQH---GCHRVLDVACGTGVDSIMLVEEG 79
Query: 91 FHGITNVDFSKVVISDML---RRNVRDR-----------SDMRWRVMDMTSMQFMDETFD 136
F +T+VD S ML + +R + W +D + FD
Sbjct: 80 FS-VTSVDAS----DKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD--VPAGDGFD 132
Query: 137 VILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
++ G L + + L + +++ GG V
Sbjct: 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135
GCGN ++L + + +D + L+ V+++ D + + D +
Sbjct: 25 GCGNGFYCKYLLEFATK-LYCIDINV----IALKE-VKEKFD--SVITLSDPKEIPDNSV 76
Query: 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177
D IL + + + +SEVKR+LK G+ + +
Sbjct: 77 DFILFANSFHDMDDKQ-------HVISEVKRILKDDGRVIII 111
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 8e-07
Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 76 GCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133
G G ++ +G +D ++ +M V + + + D+ + +F +
Sbjct: 63 GSGLGGGCMYI--NEKYGAHTHGIDICSNIV-NMANERVSGNNKIIFEANDILTKEFPEN 119
Query: 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
FD+I + + AL N+ + + LK G +
Sbjct: 120 NFDLIYSRDAILALSLENK-----NKLFQKCYKWLKPTGTLL 156
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 21/140 (15%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
+ E + L + + L GC +E L +T +D I
Sbjct: 32 NPF-ERERHTQLLRLSLSSG---AVSNGLEIGCAAGAFTEKLAPHCKR-LTVIDVMPRAI 86
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALME-----PELGHKLGNQ 159
+ + S + W D+ E FD+I+ + E ++
Sbjct: 87 -GRACQRTKRWSHISWAATDILQ-FSTAELFDLIV-------VAEVLYYLEDMTQMR--T 135
Query: 160 YLSEVKRLLKSGGKFVCLTL 179
+ + ++L GG V +
Sbjct: 136 AIDNMVKMLAPGGHLVFGSA 155
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 49/178 (27%)
Query: 544 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 595
+ +++G G G L E + +E V++D ++ +A+ + G D +
Sbjct: 80 RVLIVGGGEGAT---LREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVL 136
Query: 596 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 655
I D ++ + R D++I +D D
Sbjct: 137 VIDDARAYLERTEE--------------------------------RYDVVI--IDLTD- 161
Query: 656 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV---NLVSRSQATKDMVISRMKMVFNH 710
G PA F VK L+ G+ + ++ +V ++ F +
Sbjct: 162 PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRY 219
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-06
Identities = 14/118 (11%), Positives = 34/118 (28%), Gaps = 20/118 (16%)
Query: 63 APTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122
+ +P ++L GCG+ + DFS ++L+ +
Sbjct: 43 SRLLTPQTRVLEAGCGHGPDAARFGPQAAR-WAAYDFS----PELLKLARANAPHADVYE 97
Query: 123 MDM-TSMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
+ + F +I+ + G + + + L F+ +
Sbjct: 98 WNGKGELPAGLGAPFGLIVSRRGPTS-------------VILRLPELAAPDAHFLYVG 142
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 23/138 (16%)
Query: 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVV 103
+ ++ L++ + T P I+ GCG L L G T +D
Sbjct: 5 YNDDYVSF---LVNTVWKIT--KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSG--- 56
Query: 104 ISDML---RRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQ 159
+L R R D + D T ++ ++ +D+ + L + PE
Sbjct: 57 -ETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICHAFLLHMTTPE-------T 107
Query: 160 YLSEVKRLLKSGGKFVCL 177
L ++ +K GGK +C
Sbjct: 108 MLQKMIHSVKKGGKIICF 125
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 47/151 (31%)
Query: 544 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYFGFT----QDKSLKVH 596
+ ++IG G G + L E + +E V++D ++ ++ +F D V
Sbjct: 98 RVLIIGGGDGGV---LREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVR 154
Query: 597 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS 656
+ DG+ FVR+ + D++I +D+ D +
Sbjct: 155 VGDGLAFVRQ-------------------------------TPDNTYDVVI--IDTTDPA 181
Query: 657 SGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687
PA+ +F V L G+
Sbjct: 182 G----PASKLFGEAFYKDVLRILKPDGICCN 208
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 41/121 (33%)
Query: 571 VELDLTMLNLAEDYFGFT----QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITS 626
E+D ++ A Y T D ++ I +G ++VR+ K+
Sbjct: 120 CEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKN----------------- 162
Query: 627 NNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686
D++I +DS D ++G F DAL E G+F
Sbjct: 163 ---------------EFDVII--IDSTDPTAG---QGGHLFTEEFYQACYDALKEDGVFS 202
Query: 687 V 687
Sbjct: 203 A 203
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 9e-06
Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 15/124 (12%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135
GC + L + + G ++ ++ + + + + ++ M + +E F
Sbjct: 40 GCSSGALGAAIKENGTR-VSGIEAFPEAA-EQAKEKLDH---VVLGDIETMDMPYEEEQF 94
Query: 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL---AESHVLGLLFPKF 192
D ++ L+ L +P + +VK +K G + S + LL +
Sbjct: 95 DCVIFGDVLEHLFDPW-------AVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNW 147
Query: 193 RFGW 196
+
Sbjct: 148 TYTE 151
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 9e-06
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 44 FEW----YAEWPQLR-DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNV 97
W Y ++ R P L+ GCG +E L D IT +
Sbjct: 4 MAWSAQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGI 63
Query: 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVIL 139
D DML + + + D+ + + + D++
Sbjct: 64 DSD----DDMLEKAADRLPNTNFGKADLATWKP-AQKADLLY 100
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 76 GCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQFM 131
GCG + + L A +T + S+ ++ R + + D + F
Sbjct: 69 GCGIGKPAVRL--ATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126
Query: 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
D +FD + L++L + + + L E+ R+L+ GG
Sbjct: 127 DASFDAVW---ALESLH--HMPDR--GRALREMARVLRPGGTVA 163
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 85/572 (14%), Positives = 150/572 (26%), Gaps = 204/572 (35%)
Query: 85 HL-YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143
H+ ++ G H D ++S V + D + V DM E D I
Sbjct: 6 HMDFETGEHQYQYKD----ILSVFEDAFVDN-FDCK-DVQDMPKSILSKEEIDHI----- 54
Query: 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 203
+M V L LF W +
Sbjct: 55 ---IMSK-----------DAVSGTL------------------RLF------WTL----- 71
Query: 204 PQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEALESENQ---- 259
S E +Q F+ + N F + +++E +
Sbjct: 72 --LSKQEEMVQKFVEEVLR---------------------INYKF-LMSPIKTEQRQPSM 107
Query: 260 TRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARENS 319
R Y D LY+ D Q+ AK ++ R + L R LL+ R
Sbjct: 108 MTRMYIEQRDRLYN--DNQVFAKYNV------SRLQPYL--------KLRQALLELRPAK 151
Query: 320 GPF---MYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMDEI 376
+ G KT W+ ++ V L ++
Sbjct: 152 NVLIDGVLGSG-----KT-------------WVALD---------VCLS--------YKV 176
Query: 377 QKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENVDP 436
Q + + L + + M+ +++Q + T D
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQ-------KLLYQIDPNWT----------SRSDH 219
Query: 437 EFSRIWPSEDLK--FRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRK 494
+ ++ RRL+ + LL+ +V+ + + + K
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSK----PYENCLLVLL------NVQNAKAWNAFNLSCKIL 269
Query: 495 GTQRRSDDSGNQLKVYHGYLASSYHMGIISGFT------LISSYLE-SVASVGKSVKAV- 546
T R + + L S H T L+ YL+ + + V
Sbjct: 270 LTTRFKQVT-DFLSAATTTHISLDHH--SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 547 --VIGL-GAGLLPM------FLH-ECMPFVGIEAVELDLTMLNLAE--DYFG----FTQD 590
+ + + + H C +E L +L AE F F
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 591 KSLKVHITDGIKFVREM--KSSSATDEMSVVH 620
HI + + +D M VV+
Sbjct: 385 ----AHIPTI---LLSLIWFDVIKSDVMVVVN 409
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 14/127 (11%)
Query: 55 DPLISLIGAPTSSPPPQ-ILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRN 111
+ L S + L G G + L G I ++ + V N
Sbjct: 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFL--VRKFGVSIDCLNIAPVQNKRNEEYN 125
Query: 112 VRDRSD--MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 169
+ + + + D ++D I DA + K + E R+LK
Sbjct: 126 NQAGLADNITVKYGSFLEIPCEDNSYDFIW---SQDAFL--HSPDK--LKVFQECARVLK 178
Query: 170 SGGKFVC 176
G
Sbjct: 179 PRGVMAI 185
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 17/116 (14%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDML---RRNVRDR---SDMR 119
P + CG L + G + +D+ + L R +
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYD----PEALDGATRLAAGHALAGQIT 173
Query: 120 WRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
D + E +D++ G + EP+ + + LK GG V
Sbjct: 174 LHRQDAWKLDT-REGYDLLTSNGLN--IYEPDDARVT--ELYRRFWQALKPGGALV 224
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)
Query: 76 GCGNSRLSEHLYDA-GFHG-ITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFM 131
G G +L G G + +D + ++ + V ++ + +
Sbjct: 45 GTGAGFYLPYLSKMVGEKGKVYAIDVQEEMV-NYAWEKVNKLGLKNVEVLKSEENKIPLP 103
Query: 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177
D T D I EL ++L E+KR+ K +
Sbjct: 104 DNTVDFIFMAFTF-----HELSEP--LKFLEELKRVAKPFAYLAII 142
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 20/110 (18%)
Query: 76 GCGNSRLSEHL---YDAGFHGITN----VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128
GCG + + G+T DF + D R V +M
Sbjct: 125 GCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAR---ELRIDDHVRSR--VCNMLDT 179
Query: 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
F ++ + + SE R LK GG++V +T
Sbjct: 180 PFDKGAVTAS---WNNEST-----MYVDLHDLFSEHSRFLKVGGRYVTIT 221
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQFM-D 132
GCG AG VD ++V I+D R N++ R + +R D
Sbjct: 72 GCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG 131
Query: 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL 188
+ FDVI + + + + R L+ GG F+ + +L
Sbjct: 132 KEFDVISSQFSFHYAFSTS---ESLDIAQRNIARHLRPGGYFIMTVPSRDVILERY 184
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 54/178 (30%)
Query: 544 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 595
K ++IG G G + L E + +E+ E+D ++ +++ + G+ L +
Sbjct: 98 KVLIIGGGDGGV---LREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY-SSSKLTL 153
Query: 596 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 655
H+ DG +F+++ + D++I DS D
Sbjct: 154 HVGDGFEFMKQ--------------------------------NQDAFDVII--TDSSDP 179
Query: 656 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV---NLVSRSQATKDMVISRMKMVFNH 710
PA + S+ +K AL E G+ K+M + +F
Sbjct: 180 MG----PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMR-QFCQSLFPV 232
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 49/152 (32%)
Query: 544 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 595
K +VIG G G + L E IE E+D ++++++ +F G+ +D + +
Sbjct: 123 KVLVIGGGDGGV---LREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-EDPRVNL 178
Query: 596 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 655
I DG+ F++ A+ D +I+D P
Sbjct: 179 VIGDGVAFLKN-------------------------------AAEGSYDAVIVDSSDPIG 207
Query: 656 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687
PA + E F +V AL G+
Sbjct: 208 ------PAKELFEKPFFQSVARALRPGGVVCT 233
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 9e-05
Identities = 26/174 (14%), Positives = 56/174 (32%), Gaps = 34/174 (19%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEW--PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSE 84
+ E+W + + R I ++ E L+ L + + ++ P CG + +
Sbjct: 32 TLEDWKEKWVTRHIS----FHQEQGHQLLKKHLDTFLKGQ---SGLRVFFPLCGKAIEMK 84
Query: 85 HLYDAGFHGITNVDFSKVVISDMLRRNVRD------------------RSDMRWRVMDMT 126
D G + V+ S++ I + + +
Sbjct: 85 WFADRGHT-VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143
Query: 127 SMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179
+ + FD I D+G L A+ + Y + LL+ +++ L
Sbjct: 144 DLPRANIGKFDRIWDRGALVAINPGDHDR-----YADIILSLLRKEFQYLVAVL 192
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 44/122 (36%)
Query: 571 VELDLTMLNLAEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 625
E+D T++ +++ YF G+ +DK + V I D KF+ + +
Sbjct: 108 CEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLENVTN---------------- 150
Query: 626 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 685
D++I VDS D PA +F + +AL G
Sbjct: 151 ----------------TYDVII--VDSSDPIG----PAETLFNQNFYEKIYNALKPNGYC 188
Query: 686 IV 687
+
Sbjct: 189 VA 190
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 50/152 (32%)
Query: 544 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 595
+ ++IG G G + L E + +E E+D ++++A+ + GF L +
Sbjct: 111 RVLIIGGGDGGI---LREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF-SHPKLDL 166
Query: 596 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 655
DG +F++ K D++I D P
Sbjct: 167 FCGDGFEFLKNHK--------------------------------NEFDVIITDSSDPVG 194
Query: 656 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687
PA S+ ++DAL E G+
Sbjct: 195 ------PAESLFGQSYYELLRDALKEDGILSS 220
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 42/121 (34%)
Query: 571 VELDLTMLNLAEDYFGFT----QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITS 626
V++D ++ ++ + D + V + DG + + +
Sbjct: 105 VDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSE------------------ 146
Query: 627 NNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686
+ D+++ VDS + PA + F + AL E G+F+
Sbjct: 147 --------------NQYDVIM--VDSTEPVG----PAVNLFTKGFYAGIAKALKEDGIFV 186
Query: 687 V 687
Sbjct: 187 A 187
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 44/122 (36%)
Query: 571 VELDLTMLNLAEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 625
E+D T++ +++ YF G+ +DK + V I D KF+ + +
Sbjct: 146 CEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLENVTN---------------- 188
Query: 626 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 685
D++I VDS D PA +F + +AL G
Sbjct: 189 ----------------TYDVII--VDSSDPIG----PAETLFNQNFYEKIYNALKPNGYC 226
Query: 686 IV 687
+
Sbjct: 227 VA 228
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 49/127 (38%)
Query: 571 VELDLTMLNLAEDYF----------GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620
VE+D ++ +++D + + K+ I DG +F++
Sbjct: 104 VEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------------- 149
Query: 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALS 680
N D++I DS D PA F V DAL+
Sbjct: 150 -------------------NRGFDVII--ADSTDPVG----PAKVLFSEEFYRYVYDALN 184
Query: 681 EQGLFIV 687
G+++
Sbjct: 185 NPGIYVT 191
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 4e-04
Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 41/169 (24%)
Query: 9 SSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEW-YAEWPQLRDPLISLIGAPTSS 67
S SS+A L Q E + + F+ +WP P+ +
Sbjct: 19 SGPSSAAQRLFQE-----DPEAFLLYH------RGFQSQVKKWPL--QPVDRIARDLRQR 65
Query: 68 PPPQILVP-GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126
P ++ GCG+ RL+ + + V D+ + R V DM
Sbjct: 66 PASLVVADFGCGDCRLASSIRN------------PVHCFDLASLDPR------VTVCDMA 107
Query: 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
+ DE+ DV + +LM + +L E R+LK GG
Sbjct: 108 QVPLEDESVDVAVFCL---SLMGTNIR-----DFLEEANRVLKPGGLLK 148
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 4e-04
Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 20/138 (14%)
Query: 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN---- 111
L + P ++LVP CG S+ L G+H + + S+ +
Sbjct: 10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQP 68
Query: 112 --VRDRSDMRWRVMDMTSMQF--------MDETFDVILDKGGLDALMEPELGHKLGNQYL 161
+ + D+ + AL +Y+
Sbjct: 69 HITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMR-----ERYV 123
Query: 162 SEVKRLLKSGGKFVCLTL 179
++ L+ + +TL
Sbjct: 124 QHLEALMPQACSGLLITL 141
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 771 | |||
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.94 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.91 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 99.86 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.85 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.84 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.83 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.8 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.79 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.79 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.77 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.77 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.77 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.75 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.71 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.71 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.68 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.68 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.68 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.68 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.66 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.63 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.63 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.63 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.6 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.59 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.59 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.59 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.58 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.58 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.57 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.56 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.56 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.56 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.56 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.56 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.55 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.55 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.55 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.55 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.55 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.54 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.53 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.53 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.53 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.52 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.52 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.52 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.52 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.52 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.51 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.51 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.51 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.5 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.5 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.5 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.5 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.5 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.5 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.5 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.5 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.5 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.49 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.49 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.49 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.49 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.49 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.49 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.48 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.48 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.47 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.47 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.46 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.46 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.45 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.45 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.45 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.44 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.44 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.43 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.43 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.43 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.42 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.42 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.42 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.42 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.4 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.4 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.4 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.4 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.4 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.39 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.39 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.38 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.38 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.38 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.38 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.37 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.37 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.37 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.36 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.36 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.35 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.35 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.35 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.35 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.34 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.34 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.34 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.33 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.32 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.31 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.31 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.31 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.31 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.3 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.3 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.3 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.3 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.29 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.28 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.28 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.28 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.28 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.28 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.28 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.28 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.27 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.27 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.27 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.26 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.26 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.26 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.26 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.25 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.25 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.25 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.25 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.25 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.25 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.24 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.24 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.23 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.23 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.23 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.23 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.23 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.22 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.22 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.22 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.21 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.21 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.21 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.21 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.2 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.19 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.19 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.17 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.17 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.17 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.17 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.17 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.16 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.16 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.15 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.15 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.15 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.15 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.15 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.15 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.14 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.14 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.14 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.14 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.14 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.14 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.14 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.13 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.13 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.13 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.13 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.13 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.12 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.12 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.12 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.12 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.12 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.11 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.11 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.11 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.11 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.1 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.1 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.1 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.09 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.09 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.08 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.08 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.08 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.08 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.08 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.07 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.07 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.07 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.07 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.06 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.06 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.06 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.06 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.05 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.05 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.04 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.04 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.04 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.03 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.03 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.03 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.03 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.02 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.02 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.02 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.01 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.01 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.01 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.01 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.01 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.01 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.01 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.0 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.0 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.0 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.0 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.99 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.98 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.98 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.98 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.98 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.97 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.97 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.96 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.95 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.95 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.94 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.94 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.94 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.93 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.93 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.93 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.93 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.92 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.92 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.92 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.92 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.92 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.91 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.9 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.9 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.9 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.9 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.9 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.89 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.89 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.89 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.89 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.89 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.88 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.88 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.88 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.88 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.87 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.87 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.86 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.86 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.86 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.86 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.86 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.85 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.85 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.84 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.84 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.84 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.84 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.83 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.82 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.81 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.81 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.8 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.8 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.79 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.79 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.78 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.78 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.76 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.75 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.75 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.74 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.74 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.74 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.73 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.73 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.73 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.73 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.72 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.72 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.72 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.72 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.7 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.7 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.69 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.69 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.69 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.68 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.68 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.67 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.67 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.67 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.67 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.66 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.66 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.66 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.66 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.65 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.65 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.64 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.64 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.63 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.62 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.62 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.62 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.61 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.6 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.6 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.6 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.6 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.6 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.6 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.59 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.59 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.59 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.58 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.58 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.58 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.58 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.58 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.58 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.57 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.57 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.57 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.57 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.56 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.56 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.56 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.56 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.56 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.55 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.55 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.54 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.54 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.53 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.53 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.53 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.53 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.53 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.53 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.52 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.52 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.51 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.51 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.51 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.51 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.5 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.5 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.5 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.49 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.49 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.49 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.49 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.49 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.49 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.48 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.48 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.48 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.48 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.47 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.47 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.47 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.47 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.46 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.46 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.46 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.45 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.45 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.45 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.45 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.45 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.45 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.45 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.44 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.44 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.44 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.44 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.43 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.43 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.43 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.43 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.43 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.43 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.42 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.42 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.41 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.41 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.4 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.4 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.4 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.4 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.39 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.39 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.38 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.38 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.38 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.37 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.37 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.37 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.37 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.36 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.36 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.36 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.36 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.36 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.35 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.35 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.35 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.35 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.35 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.35 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.34 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.33 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.33 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.33 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.32 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.31 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.31 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.31 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.31 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.3 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.3 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.3 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.3 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.29 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.29 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.29 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.29 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.28 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.28 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.28 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.28 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.28 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.28 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.27 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.27 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.26 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.26 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.26 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.25 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.25 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.25 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.25 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.24 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.23 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.23 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.23 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.23 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.22 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.21 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.21 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.21 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.21 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.19 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.19 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.19 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.18 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.18 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.18 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.18 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.18 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.17 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 98.17 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.16 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.14 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.14 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.13 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.12 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.11 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.11 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.11 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.1 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.09 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.09 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.09 |
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=239.04 Aligned_cols=181 Identities=20% Similarity=0.291 Sum_probs=151.4
Q ss_pred cCCccchhHHHHHHHHhhhh--hhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC
Q 004164 510 YHGYLASSYHMGIISGFTLI--SSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 587 (771)
Q Consensus 510 d~~~L~~~Y~~~m~~~l~l~--~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~ 587 (771)
|+.++.+.||+.|++.+.++ .+ ..+++.+||+||+|+|.++++|.+++|..+|++|||||.|+++|+++|++
T Consensus 62 dP~~le~~Y~e~m~~~~~~l~~~~------p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~ 135 (317)
T 3gjy_A 62 QPQALEFEYMRWIATGARAFIDAH------QDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI 135 (317)
T ss_dssp CTTCCCSHHHHHHHHHHHHHHHHH------SCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC
T ss_pred CCcchhhHHHHHHHHHHHhhcccC------CCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc
Confidence 46778999999999876642 12 01223499999999999999999988999999999999999999999998
Q ss_pred CCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc
Q 004164 588 TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV 667 (771)
Q Consensus 588 ~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~ 667 (771)
..++|++++++||++|+.... ..+||+||+|++.... ++..++
T Consensus 136 ~~~~rv~v~~~Da~~~l~~~~-------------------------------~~~fDvIi~D~~~~~~------~~~~L~ 178 (317)
T 3gjy_A 136 PRAPRVKIRVDDARMVAESFT-------------------------------PASRDVIIRDVFAGAI------TPQNFT 178 (317)
T ss_dssp CCTTTEEEEESCHHHHHHTCC-------------------------------TTCEEEEEECCSTTSC------CCGGGS
T ss_pred cCCCceEEEECcHHHHHhhcc-------------------------------CCCCCEEEECCCCccc------cchhhh
Confidence 778999999999999997643 3679999999876632 478899
Q ss_pred cHHHHHHHHHccCCCcEEEEEeccCC-hhHHHHHHHHHHHhccceEEeee------cCCccEEEEEecCCCcC
Q 004164 668 EGSFLLTVKDALSEQGLFIVNLVSRS-QATKDMVISRMKMVFNHLFCLQL------EEDVNLVLFGLSSESCI 733 (771)
Q Consensus 668 ~~~fl~~~~~~L~~~Gilv~Nl~~~~-~~~~~~v~~~l~~vF~~v~~~~~------~~~~N~Vl~a~~~~~~~ 733 (771)
+.+||+.++++|+|||+|++|+.+.. ......++.+|+++|+++..+.. .+.+|.|++|++.+...
T Consensus 179 t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As~~plp~ 251 (317)
T 3gjy_A 179 TVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDTEFFS 251 (317)
T ss_dssp BHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEESSCCCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEECCCCCc
Confidence 99999999999999999999997543 24567889999999999888753 25689999999887543
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=222.31 Aligned_cols=169 Identities=20% Similarity=0.351 Sum_probs=137.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 590 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-----g~~~~ 590 (771)
+.||.. +++++|..+ +++++||+||+|+|++++.+.++.+..+|++|||||+|+++|++|| +..+|
T Consensus 67 ~~YhE~-l~h~~l~~~--------p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~d 137 (294)
T 3o4f_A 67 FIYHEM-MTHVPLLAH--------GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDD 137 (294)
T ss_dssp HHHHHH-HHHHHHHHS--------SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC
T ss_pred HHHHHH-HHHHHHhhC--------CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCC
Confidence 578875 445566554 7889999999999999999999988889999999999999999999 33478
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
+|++++++||++||++.. .+||+||+|++++.. |+..|++.+
T Consensus 138 pRv~v~~~Dg~~~l~~~~--------------------------------~~yDvIi~D~~dp~~------~~~~L~t~e 179 (294)
T 3o4f_A 138 PRFKLVIDDGVNFVNQTS--------------------------------QTFDVIISDCTDPIG------PGESLFTSA 179 (294)
T ss_dssp TTEEEEESCTTTTTSCSS--------------------------------CCEEEEEESCCCCCC------TTCCSSCCH
T ss_pred CcEEEEechHHHHHhhcc--------------------------------ccCCEEEEeCCCcCC------CchhhcCHH
Confidence 999999999999987643 679999998866532 578899999
Q ss_pred HHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEee--ec---CCccEEEEEecCCC
Q 004164 671 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LE---EDVNLVLFGLSSES 731 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~---~~~N~Vl~a~~~~~ 731 (771)
|++.++++|+|+|+++++.-+. +......++++++++|+.+..+. ++ .+.....+|++...
T Consensus 180 Fy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~~~~vPty~~g~w~f~~as~~~~ 247 (294)
T 3o4f_A 180 FYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDA 247 (294)
T ss_dssp HHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEEEECCTTSSSSCEEEEEEESCTT
T ss_pred HHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCceeeeeeeeccCCCcceeheeEECCCc
Confidence 9999999999999999987543 34455678899999999875543 33 24456777876653
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=205.52 Aligned_cols=174 Identities=12% Similarity=0.096 Sum_probs=129.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC--------
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------- 587 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-------- 587 (771)
..||+.|+... +.. ..+++||+||+|+|++++.+.++.+ .+|++|||||+|+++|++||..
T Consensus 190 ~~Y~e~l~h~~-l~~---------~~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~ 258 (381)
T 3c6k_A 190 LAYTRAIMGSG-KED---------YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDN 258 (381)
T ss_dssp HHHHHHHTTTT-CCC---------CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSS
T ss_pred HHHHHHHHHHH-hhc---------CCCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhcc
Confidence 35888776543 332 3468999999999999999988755 6999999999999999999842
Q ss_pred CCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc
Q 004164 588 TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV 667 (771)
Q Consensus 588 ~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~ 667 (771)
+.++|++++++||++||++... .+.+||+||+|+++...+.+...|+..++
T Consensus 259 pr~~rv~vii~Da~~fl~~~~~-----------------------------~~~~yDvIIvDl~D~~~s~~p~g~a~~Lf 309 (381)
T 3c6k_A 259 LKGDCYQVLIEDCIPVLKRYAK-----------------------------EGREFDYVINDLTAVPISTSPEEDSTWEF 309 (381)
T ss_dssp SEETTEEEEESCHHHHHHHHHH-----------------------------HTCCEEEEEEECCSSCCCCC----CHHHH
T ss_pred ccccceeeehHHHHHHHHhhhh-----------------------------ccCceeEEEECCCCCcccCcccCcchHHH
Confidence 2357899999999999987641 13679999999977654444455677899
Q ss_pred cHHHHHHHHHccCCCcEEEEEeccC-ChhHHHHHHHHHHHhccceEEe----eec--CCccEEEEEecC
Q 004164 668 EGSFLLTVKDALSEQGLFIVNLVSR-SQATKDMVISRMKMVFNHLFCL----QLE--EDVNLVLFGLSS 729 (771)
Q Consensus 668 ~~~fl~~~~~~L~~~Gilv~Nl~~~-~~~~~~~v~~~l~~vF~~v~~~----~~~--~~~N~Vl~a~~~ 729 (771)
+.+||+.++++|+|+|+++.+.-+. ..+....+.++|+++|+.+... .++ .+.....+|++.
T Consensus 310 t~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~ 378 (381)
T 3c6k_A 310 LRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK 378 (381)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence 9999999999999999999875332 2344567789999999976322 222 234556667654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=195.95 Aligned_cols=167 Identities=17% Similarity=0.290 Sum_probs=134.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 590 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-----g~~~~ 590 (771)
+.||..|. ++++..+ +.+.+||+||+|+|.++..+..+.+..+|++|||||.|+++|+++| ++ .+
T Consensus 59 ~~y~e~l~-~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~-~~ 128 (275)
T 1iy9_A 59 FVYHEMVA-HVPLFTH--------PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL-DD 128 (275)
T ss_dssp HHHHHHHH-HHHHHHS--------SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT-TS
T ss_pred hHHHHHHH-HHHHhhC--------CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc-CC
Confidence 67887544 5554433 4678999999999999999998877789999999999999999999 44 57
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
+|++++++||++|+.... .+||+|++|..... +|+..+++.+
T Consensus 129 ~rv~v~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~~------~~~~~l~~~~ 170 (275)
T 1iy9_A 129 PRVDVQVDDGFMHIAKSE--------------------------------NQYDVIMVDSTEPV------GPAVNLFTKG 170 (275)
T ss_dssp TTEEEEESCSHHHHHTCC--------------------------------SCEEEEEESCSSCC------SCCCCCSTTH
T ss_pred CceEEEECcHHHHHhhCC--------------------------------CCeeEEEECCCCCC------CcchhhhHHH
Confidence 899999999999987632 57999999875532 2578889999
Q ss_pred HHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEee--ecC---CccEEEEEecCC
Q 004164 671 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE---DVNLVLFGLSSE 730 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~---~~N~Vl~a~~~~ 730 (771)
|++.++++|+|||+|++|..+. +......++++++++|+++..+. ++. +.+.+++|++..
T Consensus 171 ~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ask~~ 237 (275)
T 1iy9_A 171 FYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKY 237 (275)
T ss_dssp HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESSC
T ss_pred HHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEeeCCC
Confidence 9999999999999999997653 45667788999999999866554 332 346677888753
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=187.50 Aligned_cols=190 Identities=32% Similarity=0.607 Sum_probs=153.4
Q ss_pred CCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHH
Q 004164 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (771)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~ 103 (771)
+|...+||+++|........++|+..+..+...+..++. ++.+|||+|||+|.++..+++.+..+|+++|+|+.+
T Consensus 3 ~~~~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~ 77 (215)
T 2pxx_A 3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELR-----PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVV 77 (215)
T ss_dssp GGGCHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCC-----TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHH
T ss_pred cccchhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcC-----CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHH
Confidence 577899999999876334568899999888877777763 678999999999999999999877689999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcc--------cchHHHHHHHHHHHHccccCeEEE
Q 004164 104 ISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPE--------LGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 104 i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~--------~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
++.++++.. ..+++.+.++|+.++++++++||+|++.++++++.... ........+++++.++|+|||+++
T Consensus 78 ~~~a~~~~~-~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 156 (215)
T 2pxx_A 78 VAAMQACYA-HVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFI 156 (215)
T ss_dssp HHHHHHHTT-TCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHhcc-cCCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEE
Confidence 998877764 34689999999999988889999999999998875221 011236799999999999999999
Q ss_pred EEEcCcchhhcchhhhhccCcEEEEeecCCCCCCCCCCccEEEEEEEcCC
Q 004164 176 CLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (771)
Q Consensus 176 i~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (771)
+.++..++....++......|......+. ....+|+|++++.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 200 (215)
T 2pxx_A 157 SMTSAAPHFRTRHYAQAYYGWSLRHATYG------SGFHFHLYLMHKGGK 200 (215)
T ss_dssp EEESCCHHHHHHHHCCGGGCEEEEEEEES------GGGCEEEEEEEETCC
T ss_pred EEeCCCcHHHHHHHhccccCcEEEEEEec------CcceEEEEEEEeCCC
Confidence 99999888776666555557887766652 235678888887654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=194.79 Aligned_cols=184 Identities=15% Similarity=0.159 Sum_probs=139.5
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-----CCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-----TQD 590 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-----~~~ 590 (771)
+.||..|. ++++..+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.++++|+++|.. ..+
T Consensus 61 ~~Y~e~l~-~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~ 131 (314)
T 1uir_A 61 YIYHETLV-HPAMLTH--------PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDD 131 (314)
T ss_dssp HHHHHHHH-HHHHHHS--------SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC
T ss_pred hHHHHHHH-HHHHhcC--------CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccC
Confidence 56887655 3444433 466899999999999999999987778999999999999999999842 136
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
++++++++|+.+++.... .+||+|++|..... ++.+|+..+++.+
T Consensus 132 ~~v~~~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~~---~~~~~~~~l~~~~ 176 (314)
T 1uir_A 132 PRAVLVIDDARAYLERTE--------------------------------ERYDVVIIDLTDPV---GEDNPARLLYTVE 176 (314)
T ss_dssp TTEEEEESCHHHHHHHCC--------------------------------CCEEEEEEECCCCB---STTCGGGGGSSHH
T ss_pred CceEEEEchHHHHHHhcC--------------------------------CCccEEEECCCCcc---cccCcchhccHHH
Confidence 899999999999987632 57999999875532 2345678888999
Q ss_pred HHHHHHHccCCCcEEEEEeccC---ChhHHHHHHHHHHHhccceEEee----ecCCccEEEEEecCCC--cCCCCCHHHH
Q 004164 671 FLLTVKDALSEQGLFIVNLVSR---SQATKDMVISRMKMVFNHLFCLQ----LEEDVNLVLFGLSSES--CIKDNSFPEA 741 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv~Nl~~~---~~~~~~~v~~~l~~vF~~v~~~~----~~~~~N~Vl~a~~~~~--~~~~~~l~~~ 741 (771)
|++.++++|+|||+|++|..+. +......+.+.++++|+++..+. ...+.+.+++|++... ......+.++
T Consensus 177 ~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~~~~~as~~~~p~~~~~~~~~~~ 256 (314)
T 1uir_A 177 FYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEAR 256 (314)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEESSSCTTCCCTTHHHHH
T ss_pred HHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeEEEEEEECCCCcccCCHHHHHHH
Confidence 9999999999999999997543 34566788999999999865442 2344677889988732 2333335444
Q ss_pred HH
Q 004164 742 AV 743 (771)
Q Consensus 742 a~ 743 (771)
..
T Consensus 257 ~~ 258 (314)
T 1uir_A 257 IR 258 (314)
T ss_dssp HH
T ss_pred hh
Confidence 33
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=183.00 Aligned_cols=165 Identities=23% Similarity=0.362 Sum_probs=129.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc----CCC---
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFT--- 588 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F----g~~--- 588 (771)
+.||..|. .+++..+ +.+.+||+||+|+|.++..+..+ |..+|++||+||.++++|+++| ++.
T Consensus 59 ~~y~e~l~-~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~ 128 (281)
T 1mjf_A 59 RSYHEPLV-HPAMLAH--------PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM 128 (281)
T ss_dssp HHHHHHHH-HHHHHHS--------SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHH
T ss_pred hHHHHHHH-HHHHhhC--------CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhcccccccc
Confidence 56887655 4444332 45689999999999999999988 8789999999999999999999 321
Q ss_pred ---CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC
Q 004164 589 ---QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD 665 (771)
Q Consensus 589 ---~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~ 665 (771)
.+++++++++||.+++.. . .+||+|++|..... +|+..
T Consensus 129 ~~~~~~~v~~~~~D~~~~l~~-~--------------------------------~~fD~Ii~d~~~~~------~~~~~ 169 (281)
T 1mjf_A 129 LNGKHEKAKLTIGDGFEFIKN-N--------------------------------RGFDVIIADSTDPV------GPAKV 169 (281)
T ss_dssp HTTCCSSEEEEESCHHHHHHH-C--------------------------------CCEEEEEEECCCCC-----------
T ss_pred ccCCCCcEEEEECchHHHhcc-c--------------------------------CCeeEEEECCCCCC------Ccchh
Confidence 367999999999999876 4 56999999875431 25677
Q ss_pred cccHHHHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEeee--c--CCccEEEEEecC
Q 004164 666 FVEGSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSS 729 (771)
Q Consensus 666 f~~~~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~Vl~a~~~ 729 (771)
+++.+|++.++++|+|||++++|..+. .......+.+.++++|+++..+.. + .+.+.+++|++.
T Consensus 170 l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~~~~as~~ 239 (281)
T 1mjf_A 170 LFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKG 239 (281)
T ss_dssp TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred hhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence 889999999999999999999997543 456677889999999998655432 2 346788999887
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-18 Score=179.38 Aligned_cols=167 Identities=22% Similarity=0.328 Sum_probs=132.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC----CCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~----~~~ 591 (771)
+.||. |++++++..+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.|+++|+++|... .++
T Consensus 62 ~~Y~e-~l~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~ 132 (283)
T 2i7c_A 62 FAYHE-MMTHVPMTVS--------KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDK 132 (283)
T ss_dssp HHHHH-HHHHHHHTTS--------SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGST
T ss_pred hhHHH-HHHHHHHhcC--------CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCC
Confidence 56876 6666665543 4678999999999999999998877789999999999999999998542 368
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
+++++++|+.+++.... .+||+||+|.... . .|+..+++.+|
T Consensus 133 ~v~~~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~--~----~~~~~l~~~~~ 174 (283)
T 2i7c_A 133 RVNVFIEDASKFLENVT--------------------------------NTYDVIIVDSSDP--I----GPAETLFNQNF 174 (283)
T ss_dssp TEEEEESCHHHHHHHCC--------------------------------SCEEEEEEECCCT--T----TGGGGGSSHHH
T ss_pred cEEEEECChHHHHHhCC--------------------------------CCceEEEEcCCCC--C----CcchhhhHHHH
Confidence 99999999999987643 5799999987543 2 25678889999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEe--eecC--Ccc-EEEEEecC
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCL--QLEE--DVN-LVLFGLSS 729 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~--~~~~--~~N-~Vl~a~~~ 729 (771)
++.++++|+|||+|++|..+. .......+..+++++|+++..+ .++. +++ ..++|++.
T Consensus 175 l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~~s~~ 239 (283)
T 2i7c_A 175 YEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKT 239 (283)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred HHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEEEEeCC
Confidence 999999999999999997543 4455677899999999976443 3443 244 46777765
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=179.58 Aligned_cols=167 Identities=18% Similarity=0.291 Sum_probs=122.6
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC----CCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~----~~~ 591 (771)
+.||. |++++++..+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.++++|+++|... .++
T Consensus 92 ~~Y~e-~l~~l~l~~~--------~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~ 162 (314)
T 2b2c_A 92 FSYQE-MLAHLPMFAH--------PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162 (314)
T ss_dssp SHHHH-HHHHHHHHHS--------SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCT
T ss_pred hHHHH-HHHHHHHhhC--------CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCC
Confidence 46876 6666665443 4568999999999999999998888889999999999999999999432 368
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
+++++++|+.+++.... .+||+||+|.... . .|+..+++.+|
T Consensus 163 rv~~~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~--~----~~~~~l~t~~~ 204 (314)
T 2b2c_A 163 KLDLFCGDGFEFLKNHK--------------------------------NEFDVIITDSSDP--V----GPAESLFGQSY 204 (314)
T ss_dssp TEEEECSCHHHHHHHCT--------------------------------TCEEEEEECCC-------------------H
T ss_pred CEEEEEChHHHHHHhcC--------------------------------CCceEEEEcCCCC--C----CcchhhhHHHH
Confidence 99999999999987632 5799999987533 1 25677888999
Q ss_pred HHHHHHccCCCcEEEEEecc--CChhHHHHHHHHHHHhccceEEee--ecC--Ccc-EEEEEecC
Q 004164 672 LLTVKDALSEQGLFIVNLVS--RSQATKDMVISRMKMVFNHLFCLQ--LEE--DVN-LVLFGLSS 729 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~--~~~~~~~~v~~~l~~vF~~v~~~~--~~~--~~N-~Vl~a~~~ 729 (771)
|+.++++|+|||+|+++..+ .+......+.+.++++|+++..+. ++. .++ .+++|++.
T Consensus 205 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~ask~ 269 (314)
T 2b2c_A 205 YELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKN 269 (314)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred HHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEEEEEeCC
Confidence 99999999999999998633 244556778899999999764433 333 234 57778766
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=178.83 Aligned_cols=169 Identities=20% Similarity=0.250 Sum_probs=127.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC----CCCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG----FTQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg----~~~~~ 591 (771)
+.||.. +..+++..+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.++++|+++|. -..++
T Consensus 74 ~~y~e~-l~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~ 144 (296)
T 1inl_A 74 FMYHEM-LAHVPMFLH--------PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDP 144 (296)
T ss_dssp HHHHHH-HHHHHHHHS--------SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred hHHHHH-HhHHHHhcC--------CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCC
Confidence 568874 445554432 45689999999999999999988777899999999999999999982 12368
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
+++++++|+.+++.... .+||+|++|+.... . .|+..+++.+|
T Consensus 145 ~v~~~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~~-~----~~~~~l~~~~~ 187 (296)
T 1inl_A 145 RAEIVIANGAEYVRKFK--------------------------------NEFDVIIIDSTDPT-A----GQGGHLFTEEF 187 (296)
T ss_dssp TEEEEESCHHHHGGGCS--------------------------------SCEEEEEEEC---------------CCSHHH
T ss_pred ceEEEECcHHHHHhhCC--------------------------------CCceEEEEcCCCcc-c----CchhhhhHHHH
Confidence 99999999999976532 57999999875431 1 25677889999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEee--ec---CCccEEEEEecCC
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LE---EDVNLVLFGLSSE 730 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~---~~~N~Vl~a~~~~ 730 (771)
|+.++++|+|||+|+++..+. +......++++++++|+++..+. ++ .+.+.+++|++..
T Consensus 188 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~as~~~ 253 (296)
T 1inl_A 188 YQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGI 253 (296)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESSC
T ss_pred HHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEEecCCC
Confidence 999999999999999997653 45567788999999999866544 22 3445677887653
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=178.49 Aligned_cols=144 Identities=18% Similarity=0.325 Sum_probs=112.9
Q ss_pred CCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHH
Q 004164 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (771)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~ 105 (771)
.+.+||+++|.... ..+.+....+.+...+...+.. .++.+|||+|||+|..+..|++.|+ +|+|||+|+.||+
T Consensus 31 ~~~~~Wd~~y~~~~--~~~~~~~~~~~l~~~~~~~~~~---~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~ 104 (252)
T 2gb4_A 31 LTLEDWKEKWVTRH--ISFHQEQGHQLLKKHLDTFLKG---QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIR 104 (252)
T ss_dssp CCHHHHHHHHHHTC--CTTCCTTCCHHHHHHHHHHHTT---CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHH
T ss_pred CCHHHHHHHHhcCC--CCcccCCCCHHHHHHHHHhccC---CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHH
Confidence 46889999998752 2332223333444444444321 3678999999999999999999998 9999999999999
Q ss_pred HHHHHhhc------------------CCCCcEEEEeecCCCCCCC-CCccEEEeccccccccCcccchHHHHHHHHHHHH
Q 004164 106 DMLRRNVR------------------DRSDMRWRVMDMTSMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR 166 (771)
Q Consensus 106 ~~~~~~~~------------------~~~~i~~~~~D~~~l~~~~-~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~r 166 (771)
.+++++.. ...+++|+++|+.++++++ ++||+|++.++++++.... ...+++++.+
T Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~-----~~~~l~~~~~ 179 (252)
T 2gb4_A 105 EFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGD-----HDRYADIILS 179 (252)
T ss_dssp HHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGG-----HHHHHHHHHH
T ss_pred HHHHhcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHH-----HHHHHHHHHH
Confidence 98776631 2468999999999998764 8999999999999986544 6789999999
Q ss_pred ccccCeEEEEEEcC
Q 004164 167 LLKSGGKFVCLTLA 180 (771)
Q Consensus 167 vLkpGG~~ii~~~~ 180 (771)
+|||||+|+++++.
T Consensus 180 ~LkpGG~l~l~~~~ 193 (252)
T 2gb4_A 180 LLRKEFQYLVAVLS 193 (252)
T ss_dssp TEEEEEEEEEEEEE
T ss_pred HcCCCeEEEEEEEe
Confidence 99999999876543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-16 Score=167.04 Aligned_cols=168 Identities=20% Similarity=0.228 Sum_probs=125.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC----CCCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG----FTQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg----~~~~~ 591 (771)
..||..| ..+++..+ +.+.+||+||+|+|.++..+..+.+..+|++||+||.++++|+++|. -..++
T Consensus 79 ~~y~e~l-~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~ 149 (304)
T 3bwc_A 79 FVYHEVL-GHTSLCSH--------PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADP 149 (304)
T ss_dssp HHHHHHH-HHHHHTTS--------SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred hHHHHHH-hhhhhhcC--------CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCC
Confidence 4677644 44444332 45689999999999999999988777899999999999999999982 12468
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
+++++++|+.+++.... ..+||+|++|..... .|+..+++.+|
T Consensus 150 ~v~~~~~D~~~~~~~~~-------------------------------~~~fDvIi~d~~~~~------~~~~~l~~~~~ 192 (304)
T 3bwc_A 150 RATVRVGDGLAFVRQTP-------------------------------DNTYDVVIIDTTDPA------GPASKLFGEAF 192 (304)
T ss_dssp TEEEEESCHHHHHHSSC-------------------------------TTCEEEEEEECC---------------CCHHH
T ss_pred cEEEEECcHHHHHHhcc-------------------------------CCceeEEEECCCCcc------ccchhhhHHHH
Confidence 99999999999976522 257999999865432 25778889999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHh-ccceEEeee--c---CCccEEEEEecC
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMV-FNHLFCLQL--E---EDVNLVLFGLSS 729 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~v-F~~v~~~~~--~---~~~N~Vl~a~~~ 729 (771)
|+.++++|+|||+|+++..+. .......+.+.|+++ |+.+..+.. + .+....++|++.
T Consensus 193 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~~ 258 (304)
T 3bwc_A 193 YKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTLVCSKK 258 (304)
T ss_dssp HHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEEEEESS
T ss_pred HHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEEEEeCC
Confidence 999999999999999987553 334567788999999 997655532 2 234557778876
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=169.46 Aligned_cols=167 Identities=18% Similarity=0.261 Sum_probs=122.5
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~~ 591 (771)
..||. |++++++..+ ..+.+||+||+|+|.++..+..+.|..+|++||+||.++++|+++|.. ..++
T Consensus 79 ~~y~e-~l~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~ 149 (304)
T 2o07_A 79 FSYQE-MIANLPLCSH--------PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSS 149 (304)
T ss_dssp HHHHH-HHHHHHHTTS--------SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred hHHHH-HHHHHHHhhC--------CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCC
Confidence 45765 5556655433 456899999999999999999887778999999999999999999842 1368
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
+++++++|+.+++.... .+||+||+|..... .|+..+.+.+|
T Consensus 150 rv~v~~~Da~~~l~~~~--------------------------------~~fD~Ii~d~~~~~------~~~~~l~~~~~ 191 (304)
T 2o07_A 150 KLTLHVGDGFEFMKQNQ--------------------------------DAFDVIITDSSDPM------GPAESLFKESY 191 (304)
T ss_dssp TEEEEESCHHHHHHTCS--------------------------------SCEEEEEEECC-----------------CHH
T ss_pred cEEEEECcHHHHHhhCC--------------------------------CCceEEEECCCCCC------CcchhhhHHHH
Confidence 99999999999987532 57999999875432 24566788999
Q ss_pred HHHHHHccCCCcEEEEEecc--CChhHHHHHHHHHHHhccceEEe--eecCC---ccEEEEEecC
Q 004164 672 LLTVKDALSEQGLFIVNLVS--RSQATKDMVISRMKMVFNHLFCL--QLEED---VNLVLFGLSS 729 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~--~~~~~~~~v~~~l~~vF~~v~~~--~~~~~---~N~Vl~a~~~ 729 (771)
|+.++++|+|||+|+++..+ ........+.+.++++|+++... .++.. ...+++|++.
T Consensus 192 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~as~~ 256 (304)
T 2o07_A 192 YQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKN 256 (304)
T ss_dssp HHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred HHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEEEEeCC
Confidence 99999999999999998744 34455677889999999976333 23332 2345677765
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=164.69 Aligned_cols=155 Identities=12% Similarity=0.026 Sum_probs=119.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~~ 591 (771)
+.||.. ++++++..+ +.+.+||+||+|+|.++..+..+ + .+|++||+||.|+++|+++|.. ..++
T Consensus 56 ~~y~e~-l~~~~~~~~--------~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~ 124 (262)
T 2cmg_A 56 HIESEL-LAHMGGCTK--------KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNK 124 (262)
T ss_dssp HHHHHH-HHHHHHTTS--------SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCT
T ss_pred HHHHHH-HHHHhhhcC--------CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCC
Confidence 568764 444544432 45689999999999999988888 7 8999999999999999999843 1468
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
+++++++||.+|+ .+||+||+|+ .++ ..|
T Consensus 125 rv~~~~~D~~~~~------------------------------------~~fD~Ii~d~--~dp-------------~~~ 153 (262)
T 2cmg_A 125 NFTHAKQLLDLDI------------------------------------KKYDLIFCLQ--EPD-------------IHR 153 (262)
T ss_dssp TEEEESSGGGSCC------------------------------------CCEEEEEESS--CCC-------------HHH
T ss_pred eEEEEechHHHHH------------------------------------hhCCEEEECC--CCh-------------HHH
Confidence 9999999999874 2499999974 221 239
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEeee--c-CCccEEEEEecCCCc
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E-EDVNLVLFGLSSESC 732 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~-~~~N~Vl~a~~~~~~ 732 (771)
++.+++.|+|||+|+++..+. +......+..+++++|+++..+.. + .+.+.+++|++...+
T Consensus 154 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~vP~~g~~~~~~as~~~~p 219 (262)
T 2cmg_A 154 IDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKTHP 219 (262)
T ss_dssp HHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTTCTTCCEEEEEEESSCCT
T ss_pred HHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEccCCCcccEEEEeeCCCCc
Confidence 999999999999999986543 334567788999999998755432 2 445667788876433
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7e-16 Score=166.73 Aligned_cols=168 Identities=22% Similarity=0.344 Sum_probs=130.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~~ 591 (771)
+.||. |+..+++..+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.++++|++++.. ..++
T Consensus 100 ~~y~e-~l~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~ 170 (321)
T 2pt6_A 100 FAYHE-MMTHVPMTVS--------KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDK 170 (321)
T ss_dssp HHHHH-HHHHHHHHHS--------SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGST
T ss_pred hHHHH-HHHHHHHhcC--------CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCC
Confidence 56766 4445554433 456899999999999999999887778999999999999999999853 1367
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
+++++++|+.+++.... .+||+|++|.... . .|+..+++.+|
T Consensus 171 ~v~~~~~D~~~~l~~~~--------------------------------~~fDvIi~d~~~p--~----~~~~~l~~~~~ 212 (321)
T 2pt6_A 171 RVNVFIEDASKFLENVT--------------------------------NTYDVIIVDSSDP--I----GPAETLFNQNF 212 (321)
T ss_dssp TEEEEESCHHHHHHHCC--------------------------------SCEEEEEEECCCS--S----SGGGGGSSHHH
T ss_pred cEEEEEccHHHHHhhcC--------------------------------CCceEEEECCcCC--C----CcchhhhHHHH
Confidence 99999999999987532 5799999987432 2 25667888999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEee--ecC--CccE-EEEEecCC
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE--DVNL-VLFGLSSE 730 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~--~~N~-Vl~a~~~~ 730 (771)
++.+++.|+|||+++++..+. +......++++++++|+++..+. ++. ++++ .++|++..
T Consensus 213 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~as~~~ 278 (321)
T 2pt6_A 213 YEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKTD 278 (321)
T ss_dssp HHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred HHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEEeeCCC
Confidence 999999999999999987553 44567788999999999765443 333 2344 56677653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.3e-17 Score=168.74 Aligned_cols=200 Identities=18% Similarity=0.183 Sum_probs=133.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (771)
.......+...+.. ..++.+|||||||+|.++..+++.+..+|+++|+|+.+++.++++....+ ++++++++|+.+
T Consensus 30 ~~~~~~~~l~~l~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 30 SPEVTLKALSFIDN--LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD 107 (267)
T ss_dssp CHHHHHHHHTTCCC--CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred CHHHHHHHHHhccc--CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh
Confidence 33444445555541 25788999999999999999999866699999999999999988775554 569999999999
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCCCC
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKS 207 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~ 207 (771)
+++++++||+|++.++++++ + ...+++++.++|||||++++.+..-.. ..........|...++.+....
T Consensus 108 ~~~~~~~fD~i~~~~~~~~~-~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 177 (267)
T 3kkz_A 108 LPFRNEELDLIWSEGAIYNI-G-------FERGLNEWRKYLKKGGYLAVSECSWFT--DERPAEINDFWMDAYPEIDTIP 177 (267)
T ss_dssp CCCCTTCEEEEEESSCGGGT-C-------HHHHHHHHGGGEEEEEEEEEEEEEESS--SCCCHHHHHHHHHHCTTCEEHH
T ss_pred CCCCCCCEEEEEEcCCceec-C-------HHHHHHHHHHHcCCCCEEEEEEeeecC--CCChHHHHHHHHHhCCCCCCHH
Confidence 99888999999999999998 4 358999999999999999998864110 0000111111210011111110
Q ss_pred CCCCCCcc--EEEEEEEcCCccccccccccccCc------------CcCCcchHHHHHHHHHHHHHHHHHccC
Q 004164 208 SSEPSLQT--FMVVADKENSSVVLQVTSSFDHSS------------LDCNKNQAFGIHEALESENQTRREYSH 266 (771)
Q Consensus 208 ~~~~~l~~--f~~v~~k~~~~~~l~~~~~~~~y~------------~~~~~~~~~~~~~~~~~e~~~~~~~~~ 266 (771)
.-...+.. |..+- ....|...|.+.|. ......+..++++..++|+++++.|..
T Consensus 178 ~~~~~l~~aGf~~v~-----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 245 (267)
T 3kkz_A 178 NQVAKIHKAGYLPVA-----TFILPENCWTDHYFTPKVAAQKIFLTKYAGNKIAEEFSMLQSIEEELYHKYKE 245 (267)
T ss_dssp HHHHHHHHTTEEEEE-----EEECCGGGTTTTTHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEE-----EEECCHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 00011111 55443 22345556644441 123455777889999999999998864
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-17 Score=164.26 Aligned_cols=107 Identities=18% Similarity=0.310 Sum_probs=92.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc-------------CCCCcEEEEeecCCCCCCC-
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------------DRSDMRWRVMDMTSMQFMD- 132 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~-------------~~~~i~~~~~D~~~l~~~~- 132 (771)
.++.+|||+|||+|..+..|++.|+ +|+|+|+|+.||+.+++++.. ...+++++++|+.++++++
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 4678999999999999999999988 999999999999999887642 2468999999999998775
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++||+|++.++++++...+ ...++++++++|||||++++++.
T Consensus 100 ~~fD~v~~~~~l~~l~~~~-----~~~~l~~~~r~LkpgG~~~l~~~ 141 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADM-----RERYVQHLEALMPQACSGLLITL 141 (203)
T ss_dssp HSEEEEEEESCGGGSCHHH-----HHHHHHHHHHHSCSEEEEEEEEE
T ss_pred CCEEEEEECcchhhCCHHH-----HHHHHHHHHHHcCCCcEEEEEEE
Confidence 8999999999999986433 66899999999999999555553
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=164.96 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=131.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (771)
.......+...+.. ..++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++....+ .+++++++|+.+
T Consensus 30 ~~~~~~~~l~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 107 (257)
T 3f4k_A 30 SPEATRKAVSFINE--LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN 107 (257)
T ss_dssp CHHHHHHHHTTSCC--CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred CHHHHHHHHHHHhc--CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 34444445555532 25678999999999999999999865599999999999999888776544 349999999999
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCCCC
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKS 207 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~ 207 (771)
+++++++||+|++.++++++ + ...+++++.++|+|||++++.+..-.. ..........|...++.+.+..
T Consensus 108 ~~~~~~~fD~v~~~~~l~~~-~-------~~~~l~~~~~~L~pgG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 177 (257)
T 3f4k_A 108 LPFQNEELDLIWSEGAIYNI-G-------FERGMNEWSKYLKKGGFIAVSEASWFT--SERPAEIEDFWMDAYPEISVIP 177 (257)
T ss_dssp CSSCTTCEEEEEEESCSCCC-C-------HHHHHHHHHTTEEEEEEEEEEEEEESS--SCCCHHHHHHHHHHCTTCCBHH
T ss_pred CCCCCCCEEEEEecChHhhc-C-------HHHHHHHHHHHcCCCcEEEEEEeeccC--CCChHHHHHHHHHhCCCCCCHH
Confidence 99989999999999999998 3 358999999999999999998853100 0000111111211111111111
Q ss_pred CCCCCCcc--EEEEEEEcCCccccccccccccC------------cCcCCcchHHHHHHHHHHHHHHHHHcc
Q 004164 208 SSEPSLQT--FMVVADKENSSVVLQVTSSFDHS------------SLDCNKNQAFGIHEALESENQTRREYS 265 (771)
Q Consensus 208 ~~~~~l~~--f~~v~~k~~~~~~l~~~~~~~~y------------~~~~~~~~~~~~~~~~~~e~~~~~~~~ 265 (771)
.-...+.. |..+. ....+...|...| ..........++++.++.|++.++.|.
T Consensus 178 ~~~~~l~~aGf~~v~-----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (257)
T 3f4k_A 178 TCIDKMERAGYTPTA-----HFILPENCWTEHYFAPQDEVRETFMKEHAGNKTAMDFMKGQQYERSLYSKYK 244 (257)
T ss_dssp HHHHHHHHTTEEEEE-----EEECCGGGTCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCeEEE-----EEECChhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 10011111 54444 2234555664443 112234556678888999999888885
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=163.90 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=84.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||.+|+|+|.++..+.... ..+|++||+++.+++.|++.+ |+ .+++++++.+|+.+++....
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl-~~~~v~~i~~D~~~~l~~~~--------- 607 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGL-TGRAHRLIQADCLAWLREAN--------- 607 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC-CSTTEEEEESCHHHHHHHCC---------
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHhcC---------
Confidence 34689999999999988877743 347999999999999999987 43 22589999999999987643
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCC-cCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s-~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.+||+|++|.-.-..+..+. .....=.-.+++..+.++|+|||+|++-..++
T Consensus 608 -----------------------~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 608 -----------------------EQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp -----------------------CCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred -----------------------CCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 67999999763211000000 00000012467889999999999999766543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=161.89 Aligned_cols=168 Identities=21% Similarity=0.346 Sum_probs=127.1
Q ss_pred chhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-----CCC
Q 004164 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQ 589 (771)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg-----~~~ 589 (771)
.+.||. |+..+++..+ +.+.+||+||+|+|.++..|..+.|..+|++||+||.++++|+++|. + .
T Consensus 103 e~~y~e-~L~~l~l~~~--------~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl-~ 172 (334)
T 1xj5_A 103 ECAYQE-MITHLPLCSI--------PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-E 172 (334)
T ss_dssp HHHHHH-HHHHHHHTTS--------SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-G
T ss_pred chHHHH-HHHHHHHhhC--------CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-C
Confidence 356776 5555655432 46689999999999999999998777899999999999999999983 2 4
Q ss_pred CCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccH
Q 004164 590 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 669 (771)
Q Consensus 590 ~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~ 669 (771)
+++++++++|+.+++.... ..+||+|++|..... .++..++..
T Consensus 173 ~~rv~~~~~D~~~~l~~~~-------------------------------~~~fDlIi~d~~~p~------~~~~~l~~~ 215 (334)
T 1xj5_A 173 DPRVNLVIGDGVAFLKNAA-------------------------------EGSYDAVIVDSSDPI------GPAKELFEK 215 (334)
T ss_dssp STTEEEEESCHHHHHHTSC-------------------------------TTCEEEEEECCCCTT------SGGGGGGSH
T ss_pred CCcEEEEECCHHHHHHhcc-------------------------------CCCccEEEECCCCcc------CcchhhhHH
Confidence 6799999999999987643 257999999875331 145567789
Q ss_pred HHHHHHHHccCCCcEEEEEecc--CChhHHHHHHHHHHHhccceEE---eeecCC---ccEEEEEecC
Q 004164 670 SFLLTVKDALSEQGLFIVNLVS--RSQATKDMVISRMKMVFNHLFC---LQLEED---VNLVLFGLSS 729 (771)
Q Consensus 670 ~fl~~~~~~L~~~Gilv~Nl~~--~~~~~~~~v~~~l~~vF~~v~~---~~~~~~---~N~Vl~a~~~ 729 (771)
+||+.++++|+|||+|+++.-+ ........++.+++++|+.+.. ..++.. ....+||++.
T Consensus 216 ~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~~vP~y~~g~~gf~~as~~ 283 (334)
T 1xj5_A 216 PFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTE 283 (334)
T ss_dssp HHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECS
T ss_pred HHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCccccceEEEeCCcccCCceEEEEcccC
Confidence 9999999999999999997422 3444556778999999995332 233332 2446677764
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-15 Score=147.59 Aligned_cols=132 Identities=20% Similarity=0.348 Sum_probs=107.3
Q ss_pred CCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHH
Q 004164 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (771)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i 104 (771)
|...+||+..|.... . . ..+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.++
T Consensus 5 ~~~~~~~~~~~~~~~---~------~----~~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~ 67 (199)
T 2xvm_A 5 IRDENYFTDKYELTR---T------H----SEVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSI 67 (199)
T ss_dssp CCCTTHHHHHHTCCC---C------C----HHHHHHTTT---SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH
T ss_pred EechHHHhhhhcccc---c------c----HHHHHHhhc---cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHH
Confidence 556789999886541 1 1 124455543 4677999999999999999999876 999999999999
Q ss_pred HHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 105 SDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 105 ~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+.++++....+ +++++.++|+.++++ +++||+|++..+++++...+ ...+++++.++|+|||++++++.
T Consensus 68 ~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 68 ANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKT-----IPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp HHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGG-----HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhCCHHH-----HHHHHHHHHHhcCCCeEEEEEEe
Confidence 98887765433 479999999999888 78999999999999986433 67999999999999999888764
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=156.23 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=92.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC---CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG---FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g---~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
+++.+|||||||+|..+..|++.. ..+|+|+|+|+.||+.++++....+ .+++++++|+.+++++ +||+|++.
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~ 146 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 146 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceee
Confidence 478999999999999999998862 2389999999999999988875543 4799999999998864 69999999
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.+++++...+ ...+|++++++|||||+|++.+..
T Consensus 147 ~~l~~~~~~~-----~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 147 FTLQFLEPSE-----RQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp SCGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eeeeecCchh-----HhHHHHHHHHHcCCCcEEEEEecc
Confidence 9999986544 568999999999999999998764
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-15 Score=149.85 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=111.1
Q ss_pred CHhhHHHHHhhcCCCCccccccch---hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEW---PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~---~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~ 103 (771)
+.++|++.|... +++.+...+ ..+...+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+
T Consensus 13 ~~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~ 85 (216)
T 3ofk_A 13 TYQSLERELAND---DPWRLDDNPFERERHTQLLRLSLSS---GAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRA 85 (216)
T ss_dssp HHHHHHHHHTSS---SGGGTTTCHHHHHHHHHHHHHHTTT---SSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHH
T ss_pred hHHHHHHHhcCC---CCcccccCHhHHHHHHHHHHHHccc---CCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHH
Confidence 567999998764 222222111 1233344445443 5678999999999999999999876 99999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 104 ISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 104 i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++.++++... .++++++++|+.+++ ++++||+|++..+++++.+++ .+..++.++.++|+|||++++.+...
T Consensus 86 ~~~a~~~~~~-~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 86 IGRACQRTKR-WSHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMT----QMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp HHHHHHHTTT-CSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHH----HHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHHHhccc-CCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHH----HHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9988777643 458999999999988 678999999999999998643 25688999999999999999987653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-15 Score=150.66 Aligned_cols=138 Identities=21% Similarity=0.374 Sum_probs=101.8
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHH
Q 004164 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (771)
Q Consensus 28 ~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~ 107 (771)
.+||+.+|.... .....++. .+..++. ++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+
T Consensus 3 ~~yw~~~~~~~~-~~~~~~~~-------~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a 68 (235)
T 3sm3_A 3 ESYWEKVSGKNI-PSSLDLYP-------IIHNYLQ-----EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLA 68 (235)
T ss_dssp ----------------CCCCT-------THHHHCC-----TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred hhHHHHHhhccC-CCHHHHHH-------HHHHhCC-----CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHH
Confidence 579999887541 22222222 2555553 678999999999999999999977 999999999999988
Q ss_pred HHHhhcCCC------CcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 108 LRRNVRDRS------DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 108 ~~~~~~~~~------~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++....+. ++.+.++|+..+++++++||+|++..+++++.+++ ....+++++.++|+|||++++.++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 69 ETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPK----ERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp HHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCCHH----HHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred HHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcchhhcCCCHH----HHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 877654432 58999999999999899999999999999987644 25589999999999999999999875
Q ss_pred ch
Q 004164 182 SH 183 (771)
Q Consensus 182 ~~ 183 (771)
.+
T Consensus 145 ~~ 146 (235)
T 3sm3_A 145 NW 146 (235)
T ss_dssp CT
T ss_pred ch
Confidence 44
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-15 Score=155.42 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=95.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (771)
.+.+.|..+.. ...+|||||||+|.++..|++.+. +|+|+|+|+.|++.+ ...+++.++++|+++++++
T Consensus 28 ~l~~~l~~~~~-----~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a-----~~~~~v~~~~~~~e~~~~~ 96 (257)
T 4hg2_A 28 ALFRWLGEVAP-----ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQA-----LRHPRVTYAVAPAEDTGLP 96 (257)
T ss_dssp HHHHHHHHHSS-----CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTC-----CCCTTEEEEECCTTCCCCC
T ss_pred HHHHHHHHhcC-----CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhh-----hhcCCceeehhhhhhhccc
Confidence 45555666553 457999999999999999999876 999999999888754 2357899999999999999
Q ss_pred CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+++||+|++..++|++. ..+++.+++|+|||||+|+++++...
T Consensus 97 ~~sfD~v~~~~~~h~~~--------~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 97 PASVDVAIAAQAMHWFD--------LDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp SSCEEEEEECSCCTTCC--------HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred CCcccEEEEeeehhHhh--------HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 99999999999998863 34899999999999999999988644
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-15 Score=150.98 Aligned_cols=141 Identities=18% Similarity=0.268 Sum_probs=107.8
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~ 106 (771)
..++|+++|.... ..|.... ....+..++.... .++.+|||+|||+|.++..|+..+. +|+++|+|+.+++.
T Consensus 32 ~~~~w~~~~~~~~----~~~~~~~--~~~~l~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~ 103 (235)
T 3lcc_A 32 EEGGWEKCWEEEI----TPWDQGR--ATPLIVHLVDTSS-LPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAK 103 (235)
T ss_dssp HHHHHHHHHHTTC----CTTCCSS--CCHHHHHHHHTTC-SCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHH
T ss_pred CHHHHHHHHhcCC----CCcccCC--CCHHHHHHHHhcC-CCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHH
Confidence 4679999998652 2344221 1122333332211 2346999999999999999988766 89999999999999
Q ss_pred HHHHhhcC--CCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 107 MLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 107 ~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++++.... ..+++++++|+.+++ ++++||+|++..+++++.... ...+++++.++|+|||++++.++..
T Consensus 104 a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 104 ANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEM-----RPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp HHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGG-----HHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHH-----HHHHHHHHHHHCCCCcEEEEEEecc
Confidence 98877542 256999999999987 456999999999999986433 6799999999999999999988753
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=146.95 Aligned_cols=135 Identities=21% Similarity=0.245 Sum_probs=108.8
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHH
Q 004164 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (771)
Q Consensus 28 ~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~ 107 (771)
..+|+..+... +...++.+...+.+.+.. .++ +|||+|||+|.++..+++.+..+|+++|+|+.+++.+
T Consensus 14 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a 82 (219)
T 3dlc_A 14 AKNMDEISKTL-------FAPIYPIIAENIINRFGI---TAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIA 82 (219)
T ss_dssp HHHHHHHHHTT-------TTTHHHHHHHHHHHHHCC---CEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHH
T ss_pred hhhHHHHHHHh-------hccccHHHHHHHHHhcCC---CCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHH
Confidence 45666666543 222355566667777654 344 9999999999999999987334999999999999999
Q ss_pred HHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 108 LRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 108 ~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++....+ ++++++++|+.++++++++||+|++..+++++.+ ...++++++++|+|||++++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 83 LKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWED-------VATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp HHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhccC-------HHHHHHHHHHhCCCCCEEEEEecc
Confidence 88765544 4799999999999999999999999999999855 458999999999999999998754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=154.13 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=94.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~-~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++.... ..++.++++|+.++++++++||+|++..++++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 57899999999999999998887669999999999999988776544 34689999999999888889999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.++. +..+++++.++|+|||++++.+..
T Consensus 159 ~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 159 LTDQH-----LAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp SCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCHHH-----HHHHHHHHHHhcCCCeEEEEEEcc
Confidence 86543 568999999999999999998764
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=154.21 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=95.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.++.+|||+|||+|.++..+++. +. +|+++|+|+.+++.++++....+ ++++++++|+.++++++++||+|++..+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 159 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence 57889999999999999999987 66 99999999999998887765433 5799999999999999999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++++.+. ..++++++++|||||++++.+...
T Consensus 160 l~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 160 FLHSPDK-------LKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp GGGCSCH-------HHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hhhcCCH-------HHHHHHHHHHcCCCeEEEEEEecc
Confidence 9998763 499999999999999999998653
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=148.73 Aligned_cols=113 Identities=16% Similarity=0.245 Sum_probs=98.3
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCc
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (771)
.+..++.. .++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++.. ..++.++++|+.++++++++|
T Consensus 35 ~l~~~~~~---~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~f 109 (253)
T 3g5l_A 35 ELKKMLPD---FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDIAIEPDAY 109 (253)
T ss_dssp HHHTTCCC---CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGCCCCTTCE
T ss_pred HHHHhhhc---cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhCCCCCCCe
Confidence 34444443 5789999999999999999999987799999999999998877764 568999999999999988999
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+|++..+++++.+ ...++++++++|||||++++....
T Consensus 110 D~v~~~~~l~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 110 NVVLSSLALHYIAS-------FDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp EEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEEchhhhhhhh-------HHHHHHHHHHHcCCCcEEEEEeCC
Confidence 99999999999855 459999999999999999998755
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-15 Score=155.94 Aligned_cols=151 Identities=14% Similarity=0.130 Sum_probs=106.1
Q ss_pred CCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHH
Q 004164 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (771)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~ 103 (771)
.|....||+.+|.... . .+.-.....-+...+.+++.. ...++.+|||||||+|.++..++..++.+|+|+|+|+.|
T Consensus 14 ~~~~~~~~~~~y~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~ 90 (263)
T 2a14_A 14 HFLPRDYLATYYSFDG-S-PSPEAEMLKFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRN 90 (263)
T ss_dssp HCCHHHHHHHHCCCCC-S-CCHHHHHHHHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHH
T ss_pred ccCHHHHHHHhcCCCc-c-cchhhHHHHHHHHHHHHHhcC-CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHH
Confidence 3777899999997552 1 110000111222344455432 224678999999999999888777787789999999999
Q ss_pred HHHHHHHhhcCC------------------------------CCcE-EEEeecCCC-CC---CCCCccEEEecccccccc
Q 004164 104 ISDMLRRNVRDR------------------------------SDMR-WRVMDMTSM-QF---MDETFDVILDKGGLDALM 148 (771)
Q Consensus 104 i~~~~~~~~~~~------------------------------~~i~-~~~~D~~~l-~~---~~~sFDlVi~~~~l~~l~ 148 (771)
++.+++++.... .++. ++++|+.+. ++ ..++||+|++..+|+++.
T Consensus 91 l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~ 170 (263)
T 2a14_A 91 REELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC 170 (263)
T ss_dssp HHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC
T ss_pred HHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhc
Confidence 998876553321 1133 889999884 43 357999999999999864
Q ss_pred CcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 149 ~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
... .....++++++++|||||+|++.+..
T Consensus 171 ~~~---~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 171 CSL---DAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp SSH---HHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred CCH---HHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 321 12678999999999999999998743
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=150.35 Aligned_cols=113 Identities=16% Similarity=0.264 Sum_probs=97.7
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCc
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sF 135 (771)
+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++....+ +++.+.++|+.++++++++|
T Consensus 29 l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~f 104 (260)
T 1vl5_A 29 LMQIAAL---KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 104 (260)
T ss_dssp HHHHHTC---CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHhCC---CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCE
Confidence 4555543 5788999999999999999998876 99999999999999887765544 57999999999999999999
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+|++..+++++.+. ..++.+++++|||||++++.+..
T Consensus 105 D~V~~~~~l~~~~d~-------~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 105 HIVTCRIAAHHFPNP-------ASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp EEEEEESCGGGCSCH-------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEEhhhhHhcCCH-------HHHHHHHHHHcCCCCEEEEEEcC
Confidence 999999999999764 48999999999999999998654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=154.08 Aligned_cols=157 Identities=15% Similarity=0.222 Sum_probs=118.2
Q ss_pred hhhhhhccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEE
Q 004164 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGIT 95 (771)
Q Consensus 16 ~~lP~~~~~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~ 95 (771)
..+|..+.+-...++|+.++... ...+..+...+...+.. .++.+|||||||+|.++..|++.+. +|+
T Consensus 16 ~~~~~~y~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~ 83 (293)
T 3thr_A 16 EGIPDQYADGEAARVWQLYIGDT--------RSRTAEYKAWLLGLLRQ---HGCHRVLDVACGTGVDSIMLVEEGF-SVT 83 (293)
T ss_dssp TTSCCTTTTCHHHHHHHHHHTCC--------SCBCHHHHHHHHHHHHH---TTCCEEEETTCTTSHHHHHHHHTTC-EEE
T ss_pred ccChhhhcCchHHHHHHHHHhcC--------cchHHHHHHHHHHHhcc---cCCCEEEEecCCCCHHHHHHHHCCC-eEE
Confidence 33555443333456888877432 22344555667777654 4678999999999999999999988 999
Q ss_pred EEcCCHHHHHHHHHHhhcCC-----CCcEEEEeecCCCC---CCCCCccEEEec-cccccccCcccchHHHHHHHHHHHH
Q 004164 96 NVDFSKVVISDMLRRNVRDR-----SDMRWRVMDMTSMQ---FMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKR 166 (771)
Q Consensus 96 ~vDiS~~~i~~~~~~~~~~~-----~~i~~~~~D~~~l~---~~~~sFDlVi~~-~~l~~l~~~~~~~~~~~~~l~~i~r 166 (771)
|+|+|+.+++.++++..... .++.+..+|+.+++ +++++||+|++. .+++++.+..........+++++++
T Consensus 84 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~ 163 (293)
T 3thr_A 84 SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 163 (293)
T ss_dssp EEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHH
Confidence 99999999998877653222 46889999999887 788999999998 7999988721112236799999999
Q ss_pred ccccCeEEEEEEcCcchh
Q 004164 167 LLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 167 vLkpGG~~ii~~~~~~~~ 184 (771)
+|||||++++.....+.+
T Consensus 164 ~LkpgG~l~~~~~~~~~~ 181 (293)
T 3thr_A 164 MVRPGGLLVIDHRNYDYI 181 (293)
T ss_dssp TEEEEEEEEEEEECHHHH
T ss_pred HcCCCeEEEEEeCCHHHH
Confidence 999999999988764443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=145.84 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=92.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.. .+++++++|+.+++++ ++||+|++..++++
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEVP-TSIDTIVSTYAFHH 118 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCCC-SCCSEEEEESCGGG
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcCCC-CCeEEEEECcchhc
Confidence 3678999999999999999999876 99999999999998877653 5799999999999887 99999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.+++ ...+++++.++|||||++++.+..
T Consensus 119 ~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 119 LTDDE-----KNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp SCHHH-----HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred CChHH-----HHHHHHHHHHhcCCCCEEEEEecc
Confidence 87654 345999999999999999998754
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.5e-15 Score=152.50 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=94.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++.... .+++++++|+.++++++++||+|++..++++
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 170 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHCCCCCCCeEEEEEcchhhh
Confidence 578899999999999999999887668999999999999887776443 6799999999999988899999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+.+.+ ...++++++++|||||++++.+.
T Consensus 171 ~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 171 LTDAD-----FVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp SCHHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHH-----HHHHHHHHHHhcCCCeEEEEEec
Confidence 85433 67999999999999999999875
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-15 Score=150.51 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++... +++++++|+.++ +++++||+|++.++++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~ 116 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GITYIHSRFEDA-QLPRRYDNIVLTHVLEHI 116 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGC-CCSSCEEEEEEESCGGGC
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHc-CcCCcccEEEEhhHHHhh
Confidence 567999999999999999998877 899999999999988777633 799999999988 467899999999999999
Q ss_pred cCcccchHHHHHHHHHHH-HccccCeEEEEEEcCcch
Q 004164 148 MEPELGHKLGNQYLSEVK-RLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~-rvLkpGG~~ii~~~~~~~ 183 (771)
.++ ..++++++ ++|||||++++.+.....
T Consensus 117 ~~~-------~~~l~~~~~~~LkpgG~l~i~~~~~~~ 146 (250)
T 2p7i_A 117 DDP-------VALLKRINDDWLAEGGRLFLVCPNANA 146 (250)
T ss_dssp SSH-------HHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred cCH-------HHHHHHHHHHhcCCCCEEEEEcCChHH
Confidence 764 48999999 999999999998876443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.3e-15 Score=146.30 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=98.8
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (771)
...+..++.. .+.+|||+|||+|.++..|++.+. +|+++|+|+.+++.++++ .+++.++++|+.+++++++
T Consensus 31 ~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~d~~~~~~~~~ 101 (203)
T 3h2b_A 31 RVLIEPWATG----VDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQT----HPSVTFHHGTITDLSDSPK 101 (203)
T ss_dssp HHHHHHHHHH----CCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHH----CTTSEEECCCGGGGGGSCC
T ss_pred HHHHHHHhcc----CCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHh----CCCCeEEeCcccccccCCC
Confidence 4445566543 478999999999999999999977 999999999999988665 3589999999999998889
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+||+|++..+++++...+ ...+++++.++|+|||++++..+..+
T Consensus 102 ~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 102 RWAGLLAWYSLIHMGPGE-----LPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp CEEEEEEESSSTTCCTTT-----HHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred CeEEEEehhhHhcCCHHH-----HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 999999999999987444 67999999999999999999886543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=153.46 Aligned_cols=118 Identities=12% Similarity=0.202 Sum_probs=100.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHh--cCCCeEEEEcCCHHHHHHHHHHhhcC---CCCcEEEEeecC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD--AGFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMT 126 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~--~g~~~V~~vDiS~~~i~~~~~~~~~~---~~~i~~~~~D~~ 126 (771)
.+...+..+.. .++.+|||+|||+|.++..|++ .+..+|+|+|+|+.+++.++++.... .++++++++|+.
T Consensus 24 ~~~~~l~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 24 DFYKMIDEYHD----GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHHCC----SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHHhc----CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 45555666654 3789999999999999999996 34569999999999999998877655 578999999999
Q ss_pred CCCCCC------CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 127 SMQFMD------ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 127 ~l~~~~------~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++++++ ++||+|++..+++++ + ...+++++.++|+|||++++.++..
T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~-~-------~~~~l~~~~~~LkpgG~l~i~~~~~ 152 (299)
T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVECAHWF-D-------FEKFQRSAYANLRKDGTIAIWGYAD 152 (299)
T ss_dssp CCGGGCTTTTTSSCEEEEEEESCGGGS-C-------HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hCCccccccccCCCeeEEeHhhHHHHh-C-------HHHHHHHHHHhcCCCcEEEEEecCC
Confidence 998877 899999999999998 4 4599999999999999999976654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=148.14 Aligned_cols=115 Identities=27% Similarity=0.414 Sum_probs=99.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (771)
.+...+..++. ++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++. ...+++++++|+.+++++
T Consensus 42 ~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~~~ 113 (242)
T 3l8d_A 42 TIIPFFEQYVK-----KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG--EGPDLSFIKGDLSSLPFE 113 (242)
T ss_dssp THHHHHHHHSC-----TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT--CBTTEEEEECBTTBCSSC
T ss_pred HHHHHHHHHcC-----CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc--ccCCceEEEcchhcCCCC
Confidence 44555666653 678999999999999999999977 9999999999999876654 346899999999999998
Q ss_pred CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++||+|++..+++++.+. ..++++++++|+|||++++.+...
T Consensus 114 ~~~fD~v~~~~~l~~~~~~-------~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 114 NEQFEAIMAINSLEWTEEP-------LRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp TTCEEEEEEESCTTSSSCH-------HHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCccEEEEcChHhhccCH-------HHHHHHHHHHhCCCeEEEEEEcCC
Confidence 9999999999999998653 489999999999999999998653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.5e-15 Score=146.13 Aligned_cols=136 Identities=20% Similarity=0.274 Sum_probs=102.7
Q ss_pred hHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHH
Q 004164 30 NWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR 109 (771)
Q Consensus 30 yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~ 109 (771)
||+++|... ...|..........+...+ .++ +|||+|||+|.++..+++.+. +|+++|+|+.+++.+++
T Consensus 1 ~W~~~y~~~----~~~~~~~~~~~l~~~~~~~-----~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~ 69 (202)
T 2kw5_A 1 MWDERFSQS----EYVYGTEPNDFLVSVANQI-----PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQ 69 (202)
T ss_dssp CCCCCCCCC----CCCCCCCCCSSHHHHHHHS-----CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHH
T ss_pred Chhhhhccc----chhhccCchHHHHHHHHhC-----CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHH
Confidence 577777643 1223333223322333333 245 999999999999999999877 99999999999999988
Q ss_pred HhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 110 RNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 110 ~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
+....+.++.+.++|+.++++++++||+|++. +.++... ....++.++.++|+|||++++.++....
T Consensus 70 ~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 70 LAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPSS-----LRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp HHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCHH-----HHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred HHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCHH-----HHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 77655568999999999998888999999984 3333211 2679999999999999999999876443
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=147.87 Aligned_cols=117 Identities=15% Similarity=0.243 Sum_probs=99.1
Q ss_pred HHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCcc
Q 004164 58 ISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFD 136 (771)
Q Consensus 58 ~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFD 136 (771)
..++......++.+|||+|||+|.++..+++. +. +|+++|+|+.+++.++++.... ++++++++|+.++++++++||
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN-NKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccCCCCCCcEE
Confidence 33333333467889999999999999999987 65 9999999999999887766444 789999999999999899999
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+|++..+++++...+ ...++++++++|||||++++.++..
T Consensus 123 ~v~~~~~l~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 123 LIYSRDAILALSLEN-----KNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp EEEEESCGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEeHHHHHHhcChHH-----HHHHHHHHHHHcCCCCEEEEEEecc
Confidence 999999999984333 6699999999999999999998753
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-14 Score=147.80 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=94.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..+++....+|+++|+|+.+++.++++....+ .++++.++|+.++++++++||+|++..++
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 139 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESL 139 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechh
Confidence 5788999999999999999988633499999999999998887765544 46999999999999999999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++.+. ..+++++.++|||||++++.++.
T Consensus 140 ~~~~~~-------~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 140 HHMPDR-------GRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp TTSSCH-------HHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hhCCCH-------HHHHHHHHHHcCCCeEEEEEEee
Confidence 998764 49999999999999999998865
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-14 Score=142.81 Aligned_cols=123 Identities=20% Similarity=0.300 Sum_probs=101.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
+......+..++.. ..++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++.... .++.++++|+.++
T Consensus 28 ~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~ 104 (234)
T 3dtn_A 28 FDDFYGVSVSIASV--DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-LKVKYIEADYSKY 104 (234)
T ss_dssp HHHHHHHHHHTCCC--SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-TTEEEEESCTTTC
T ss_pred HHHHHHHHHHHhhc--CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-CCEEEEeCchhcc
Confidence 34444556666642 2467899999999999999999883 359999999999999887776443 3899999999999
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++ ++||+|++..+++++.+++ ...++++++++|||||++++.+...
T Consensus 105 ~~~-~~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 105 DFE-EKYDMVVSALSIHHLEDED-----KKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp CCC-SCEEEEEEESCGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred CCC-CCceEEEEeCccccCCHHH-----HHHHHHHHHHhcCCCcEEEEEEecC
Confidence 887 8999999999999986543 4579999999999999999998664
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=135.21 Aligned_cols=105 Identities=25% Similarity=0.388 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEec-cccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDK-GGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~-~~l~ 145 (771)
.++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++. +++.++++|+.++++++++||+|++. .+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 119 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF----PEARWVVGDLSVDQISETDFDLIVSAGNVMG 119 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----TTSEEEECCTTTSCCCCCCEEEEEECCCCGG
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC----CCCcEEEcccccCCCCCCceeEEEECCcHHh
Confidence 3678999999999999999999876 9999999999999886654 46999999999988888899999998 5677
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++.... ...++.++.++|+|||++++.....
T Consensus 120 ~~~~~~-----~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 120 FLAEDG-----REPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred hcChHH-----HHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 764322 5799999999999999999877653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-14 Score=145.10 Aligned_cols=119 Identities=17% Similarity=0.063 Sum_probs=100.2
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (771)
+......+...+.. .++.+|||+|||+|.++..+++....+|+++|+|+.+++.++++....+ .++++.++|+.+
T Consensus 21 ~~~~~~~l~~~~~~---~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 97 (256)
T 1nkv_A 21 TEEKYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG 97 (256)
T ss_dssp CHHHHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh
Confidence 44455556666654 6788999999999999999998733389999999999999988775544 479999999999
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+++ +++||+|++.++++++.+.. .++++++++|||||++++.+.
T Consensus 98 ~~~-~~~fD~V~~~~~~~~~~~~~-------~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 98 YVA-NEKCDVAACVGATWIAGGFA-------GAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CCC-SSCEEEEEEESCGGGTSSSH-------HHHHHHTTSEEEEEEEEEEEE
T ss_pred CCc-CCCCCEEEECCChHhcCCHH-------HHHHHHHHHcCCCeEEEEecC
Confidence 987 78999999999999987644 899999999999999999874
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=138.23 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=97.6
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC------CCcEEEEeecC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR------SDMRWRVMDMT 126 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~------~~i~~~~~D~~ 126 (771)
...+.+++.. .++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.++++....+ ++++++++|+.
T Consensus 18 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (219)
T 3jwg_A 18 LGTVVAVLKS---VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94 (219)
T ss_dssp HHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred HHHHHHHHhh---cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence 3445555543 4678999999999999999998753 699999999999999988764332 27999999998
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
..++++++||+|++..+++++.+++ ...+++++.++|||||.+++....
T Consensus 95 ~~~~~~~~fD~V~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~~i~~~~~ 143 (219)
T 3jwg_A 95 YRDKRFSGYDAATVIEVIEHLDENR-----LQAFEKVLFEFTRPQTVIVSTPNK 143 (219)
T ss_dssp SCCGGGTTCSEEEEESCGGGCCHHH-----HHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred ccccccCCCCEEEEHHHHHhCCHHH-----HHHHHHHHHHhhCCCEEEEEccch
Confidence 8888889999999999999986543 569999999999999977665543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=145.22 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=107.0
Q ss_pred CHhhHHHHHhhcC-CCCccccccc-hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHH
Q 004164 27 SKENWDKFFTIRG-IGDSFEWYAE-WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (771)
Q Consensus 27 ~~~yWd~~y~~~~-~~~~~ew~~~-~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i 104 (771)
..++|+++|.... .....-|... .......+..++.. ..++.+|||+|||+|.++..|++.+. +|+++|+|+.++
T Consensus 15 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~ 91 (245)
T 3ggd_A 15 VADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELL--FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSAL 91 (245)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTCCCGGGTHHHHHHHHTTT--SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHH
T ss_pred hHHHHHHHHHhcccCCccceecchhHHHHHHHHHHHhhc--cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHH
Confidence 3556666665431 0111223322 22223334444432 24678999999999999999999887 899999999999
Q ss_pred HHHHHHhhcCCCCcEEEEeecCCCCCCC-----CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 105 SDMLRRNVRDRSDMRWRVMDMTSMQFMD-----ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 105 ~~~~~~~~~~~~~i~~~~~D~~~l~~~~-----~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+.++++. ...+++++++|+.++++.. ..||+|++..+++++...+ ...+++++.++|||||++++.++
T Consensus 92 ~~a~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 92 EIAAKEN--TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEK-----RELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp HHHHHHS--CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGG-----HHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHhC--cccCceEEECcccccccccccccccCccEEEEcchhhcCCHHH-----HHHHHHHHHHHcCCCCEEEEEeC
Confidence 9887766 3358999999999875332 3599999999999986444 67999999999999999999987
Q ss_pred Ccc
Q 004164 180 AES 182 (771)
Q Consensus 180 ~~~ 182 (771)
..+
T Consensus 165 ~~~ 167 (245)
T 3ggd_A 165 GTG 167 (245)
T ss_dssp CTT
T ss_pred Ccc
Confidence 644
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=146.59 Aligned_cols=134 Identities=15% Similarity=0.083 Sum_probs=104.4
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~ 106 (771)
..+||..+.... ......+...+..++.. ..++.+|||||||+|.++..+++.+. +|+++|+|+.+++.
T Consensus 10 ~~~~y~~~~~~~--------~~~~~~~~~~~~~~l~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~ 78 (240)
T 3dli_A 10 TSDYYFLFEEKF--------RGSRELVKARLRRYIPY--FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKF 78 (240)
T ss_dssp --CHHHHHHHHH--------TCCHHHHHHHHGGGGGG--TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHH
T ss_pred hHHHHHHHHHHh--------CCCHHHHHHHHHHHHhh--hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 345666654432 23344555555555543 14678999999999999999999877 89999999999987
Q ss_pred HHHHhhcCCCCcEEEEeecCCC--CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 107 MLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 107 ~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
++++ +.++++|+.+. ++++++||+|++..+++++..++ ...+++++.++|||||++++.+.....
T Consensus 79 a~~~-------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 145 (240)
T 3dli_A 79 CEGK-------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPER-----LFELLSLCYSKMKYSSYIVIESPNPTS 145 (240)
T ss_dssp HHTT-------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGG-----HHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred HHhh-------cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHH-----HHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence 6543 88999999886 78889999999999999997554 679999999999999999998876443
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-14 Score=143.68 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=99.8
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~ 133 (771)
..+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++....+ +++.+.++|+.+++++++
T Consensus 11 ~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 11 GLMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred chHHHHhCc---CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 345555554 6789999999999999999998876 99999999999998877765443 579999999999999999
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+||+|++..+++++.+. ..++.++.++|||||++++.+...
T Consensus 87 ~fD~v~~~~~l~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV-------RKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp CEEEEEEESCGGGCSCH-------HHHHHHHHHHEEEEEEEEEEEECB
T ss_pred cEEEEEECCchhhccCH-------HHHHHHHHHHcCCCcEEEEEEcCC
Confidence 99999999999998753 489999999999999999987653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-14 Score=141.06 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=96.6
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCc
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (771)
.+...+.. ..++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.+++ ...++++++++|+.++ +++++|
T Consensus 36 ~~~~~l~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~---~~~~~~~~~~~d~~~~-~~~~~~ 108 (218)
T 3ou2_A 36 AALERLRA--GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR---HGLDNVEFRQQDLFDW-TPDRQW 108 (218)
T ss_dssp HHHHHHTT--TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG---GCCTTEEEEECCTTSC-CCSSCE
T ss_pred HHHHHHhc--CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh---cCCCCeEEEecccccC-CCCCce
Confidence 45555542 14667999999999999999999876 99999999999987755 2236899999999998 778999
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
|+|++..+++++.++. ...+++++.++|+|||++++.+...
T Consensus 109 D~v~~~~~l~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 109 DAVFFAHWLAHVPDDR-----FEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp EEEEEESCGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred eEEEEechhhcCCHHH-----HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9999999999987643 5699999999999999999998764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-14 Score=148.27 Aligned_cols=149 Identities=16% Similarity=0.180 Sum_probs=107.2
Q ss_pred CCCCHhhHHHHHhhcCCCCcc--ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCH
Q 004164 24 DFTSKENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (771)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~--ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~ 101 (771)
.|....||+.+|.... ..+ .++..+ ....+..++.. ...++.+|||+|||+|.++..++..+..+|+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~l~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~ 89 (265)
T 2i62_A 15 HFNPRDYLEKYYSFGS--RHCAENEILRH--LLKNLFKIFCL-GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTD 89 (265)
T ss_dssp HCCHHHHHHHHHCCCS--SCHHHHHHHHH--HHHHHHHHHHS-SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCH
T ss_pred hcCHHHHHHHHhCcCC--cchhHHHHHHh--hHHHHHHHhcc-cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCH
Confidence 3667889999997542 111 111111 11223333332 2246789999999999999999888766899999999
Q ss_pred HHHHHHHHHhhcCCC------------------------------Cc-EEEEeecCCCC-CCC---CCccEEEecccccc
Q 004164 102 VVISDMLRRNVRDRS------------------------------DM-RWRVMDMTSMQ-FMD---ETFDVILDKGGLDA 146 (771)
Q Consensus 102 ~~i~~~~~~~~~~~~------------------------------~i-~~~~~D~~~l~-~~~---~sFDlVi~~~~l~~ 146 (771)
.+++.++++...... ++ .+.++|+.+.+ +++ ++||+|++..++++
T Consensus 90 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~ 169 (265)
T 2i62_A 90 QNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDA 169 (265)
T ss_dssp HHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH
T ss_pred HHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhh
Confidence 999988777643211 17 89999999864 355 89999999999996
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.... .....+++++.++|||||++++.+..
T Consensus 170 ~~~~~---~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 170 ACPDL---PAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HCSSH---HHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hcCCh---HHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 65431 12679999999999999999998743
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.3e-14 Score=140.16 Aligned_cols=110 Identities=16% Similarity=0.269 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCcchhH-HHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLS-EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls-~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||+|||+|.++ ..++..+. +|+++|+|+.+++.++++....+.++.+.++|+.++++++++||+|++.++++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 36789999999999984 45555566 99999999999999888776556789999999999998889999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
++...+ ...++++++++|+|||++++.++..+
T Consensus 101 ~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 101 HMRKND-----VKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred hCCHHH-----HHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 874222 67999999999999999999987643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-14 Score=141.52 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||+|.++..+ +..+++++|+|+.+++.++++. +++.++++|+.++++++++||+|++..+++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALPFPGESFDVVLLFTTLEFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCCSCSSCEEEEEEESCTTTC
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccCCCCCCcEEEEEEcChhhhc
Confidence 6789999999999999887 5558999999999999887665 67999999999999988999999999999998
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.+. ..+++++.++|||||++++.+.....
T Consensus 109 ~~~-------~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 109 EDV-------ERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp SCH-------HHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred CCH-------HHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 753 48999999999999999999876543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=140.03 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=97.0
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC------CCcEEEEeecC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR------SDMRWRVMDMT 126 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~------~~i~~~~~D~~ 126 (771)
...+.+++.. .++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.+++++...+ .+++++++|+.
T Consensus 18 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 18 MNGVVAALKQ---SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94 (217)
T ss_dssp HHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence 3345555543 4678999999999999999998753 699999999999999988765433 27999999998
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..++++++||+|++..+++++.++. +..+++++.++|||||++++...
T Consensus 95 ~~~~~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 95 YQDKRFHGYDAATVIEVIEHLDLSR-----LGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp SCCGGGCSCSEEEEESCGGGCCHHH-----HHHHHHHHHTTTCCSEEEEEEEB
T ss_pred cccccCCCcCEEeeHHHHHcCCHHH-----HHHHHHHHHHHcCCCEEEEEccC
Confidence 8887778999999999999986543 57999999999999997776654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=141.34 Aligned_cols=126 Identities=19% Similarity=0.228 Sum_probs=103.8
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
.+......+.+++... ..++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++....+.++.+.++|+.++
T Consensus 19 ~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 96 (246)
T 1y8c_A 19 DYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL 96 (246)
T ss_dssp CHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC
T ss_pred cHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccC
Confidence 4455566666766541 12678999999999999999999876 899999999999999887765555899999999998
Q ss_pred CCCCCCccEEEecc-ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 129 QFMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 129 ~~~~~sFDlVi~~~-~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++ ++||+|++.. +++++.+.+ ....++++++++|+|||++++.....
T Consensus 97 ~~~-~~fD~v~~~~~~l~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 97 NIN-RKFDLITCCLDSTNYIIDSD----DLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp CCS-CCEEEEEECTTGGGGCCSHH----HHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred Ccc-CCceEEEEcCccccccCCHH----HHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 877 8999999998 999985432 26799999999999999999866553
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=138.37 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++. ++.+.++|+.+++ .+++||+|++..++++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 114 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-----GRPVRTMLFHQLD-AIDAYDAVWAHACLLH 114 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCC-CCSCEEEEEECSCGGG
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-----CCceEEeeeccCC-CCCcEEEEEecCchhh
Confidence 3678999999999999999999877 9999999999999887765 5788999999988 7799999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+...+ ...+++++.++|||||++++....
T Consensus 115 ~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 115 VPRDE-----LADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp SCHHH-----HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCHHH-----HHHHHHHHHHhcCCCcEEEEEEcC
Confidence 86333 679999999999999999998654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-14 Score=151.57 Aligned_cols=123 Identities=20% Similarity=0.326 Sum_probs=100.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMT 126 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~----~~i~~~~~D~~ 126 (771)
......+...+.. ++.+|||||||+|.++..|++.+. +|+++|+|+.+++.++++....+ .+++++++|+.
T Consensus 69 ~~~~~~~~~~~~~----~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 69 TSEAREFATRTGP----VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHHHCC----CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred cHHHHHHHHhhCC----CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence 3444556666653 445999999999999999999976 89999999999999988876555 67999999999
Q ss_pred CCCCCCCCccEEEec-cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 127 SMQFMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~-~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
++++ +++||+|++. .+++++...+ ...++++++++|+|||+|++.++..+..
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 196 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSINELDEAD-----RRGLYASVREHLEPGGKFLLSLAMSEAA 196 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHTTSCHHH-----HHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred cCCc-CCCcCEEEECCcccccCCHHH-----HHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence 9987 6899988865 5566553222 6799999999999999999999886654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.50 E-value=9.9e-14 Score=140.91 Aligned_cols=110 Identities=28% Similarity=0.370 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++....+.+++++++|+.++++++++||+|++..+++..
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 116 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence 478999999999999999999877 9999999999999998877666678999999999988888899999999885443
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
...+ ...++++++++|+|||++++.+...+.
T Consensus 117 ~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~~~ 147 (227)
T 1ve3_A 117 EPLE-----LNQVFKEVRRVLKPSGKFIMYFTDLRE 147 (227)
T ss_dssp CHHH-----HHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred CHHH-----HHHHHHHHHHHcCCCcEEEEEecChHH
Confidence 3222 568999999999999999998876433
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=143.18 Aligned_cols=136 Identities=17% Similarity=0.237 Sum_probs=101.3
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHH
Q 004164 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (771)
Q Consensus 28 ~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~ 107 (771)
.+||+..|.... ..+......+..++......++.+|||+|||+|.++..|++.|. +|+++|+|+.+++.+
T Consensus 9 a~~yd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a 79 (252)
T 1wzn_A 9 AEYYDTIYRRRI--------ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVA 79 (252)
T ss_dssp GGGHHHHTHHHH--------HTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcch--------hhhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHH
Confidence 568888776431 11222223333333322224678999999999999999999887 999999999999999
Q ss_pred HHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccc-cccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 108 LRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG-LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 108 ~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~-l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+++....+.++.++++|+.+++++ ++||+|++... ++++ ..+ ....++++++++|+|||++++..
T Consensus 80 ~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~-~~~----~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 80 RRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF-DEE----DLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp HHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS-CHH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcC-CHH----HHHHHHHHHHHHcCCCeEEEEec
Confidence 888766666899999999998765 68999998643 4443 221 26799999999999999998754
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.1e-14 Score=145.07 Aligned_cols=134 Identities=17% Similarity=0.152 Sum_probs=103.8
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHH
Q 004164 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (771)
Q Consensus 28 ~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~ 107 (771)
.++|+..+.... ..|......+...+...+ +++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.+
T Consensus 19 a~~yd~~~~~~~----~~~~~~~~~~~~~l~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a 88 (263)
T 3pfg_A 19 AELYDLVHQGKG----KDYHREAADLAALVRRHS-----PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIA 88 (263)
T ss_dssp HHHHHHHHHHTT----CCHHHHHHHHHHHHHHHC-----TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHH
T ss_pred HHHHHHHhhcCC----CCHHHHHHHHHHHHHhhC-----CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHH
Confidence 467777775431 113233333334444443 2568999999999999999999876 899999999999988
Q ss_pred HHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecc-ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 108 LRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 108 ~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~-~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++++ +++.++++|+.++++ +++||+|++.. +++++.+.+ ....++++++++|+|||++++..+.
T Consensus 89 ~~~~----~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~ 153 (263)
T 3pfg_A 89 RRRN----PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQA----ELDAALERFAAHVLPDGVVVVEPWW 153 (263)
T ss_dssp HHHC----TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHH----HHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred HhhC----CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHH----HHHHHHHHHHHhcCCCcEEEEEecc
Confidence 7765 379999999999887 68999999998 999986433 2678999999999999999997543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=142.81 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.....+++.+.++|+.++++++++||+|++..++++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 116 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence 4678999999999999999998865 999999999999988877633457899999999999988899999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
+.+. ..++.++.++|+|||++++.
T Consensus 117 ~~~~-------~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 117 VPDW-------PKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CTTH-------HHHHHHHHHHEEEEEEEEEE
T ss_pred cCCH-------HHHHHHHHHHCCCCcEEEEE
Confidence 8753 48999999999999999987
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=144.20 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||+|.++..|++.|. +|+++|+|+.+++.++++....+.++++.++|+.++++ +++||+|++..+++++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 678999999999999999999987 99999999999999988776665689999999999877 7899999999999998
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..+. ...+++++.++|+|||+++++..
T Consensus 198 ~~~~-----~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 198 NRER-----VPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp CGGG-----HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHH-----HHHHHHHHHHhcCCCcEEEEEEe
Confidence 6554 67999999999999999877664
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-14 Score=141.56 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=98.6
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~ 132 (771)
.+...+.. .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++....+ +++++.++|+.++++++
T Consensus 28 ~~~~~~~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 28 KVLKEFGL---KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHTC---CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHhCC---CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 34455543 577899999999999999999885 3599999999999999988765444 47999999999999989
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++||+|++..+++++.+ ...+++++.++|+|||++++.++.
T Consensus 105 ~~fD~v~~~~~l~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~ 145 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSE-------PLKFLEELKRVAKPFAYLAIIDWK 145 (219)
T ss_dssp SCEEEEEEESCGGGCSS-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEeehhhhhcCC-------HHHHHHHHHHHhCCCeEEEEEEec
Confidence 99999999999999865 348999999999999999998865
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=141.71 Aligned_cols=114 Identities=17% Similarity=0.291 Sum_probs=98.0
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDET 134 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~s 134 (771)
..+..++.. .++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++... .++.+.++|+.++++++++
T Consensus 33 ~~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~ 107 (243)
T 3bkw_A 33 PALRAMLPE---VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--TGITYERADLDKLHLPQDS 107 (243)
T ss_dssp HHHHHHSCC---CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGGCCCCTTC
T ss_pred HHHHHhccc---cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc--CCceEEEcChhhccCCCCC
Confidence 346666654 47789999999999999999998766999999999999988766532 4799999999999888899
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
||+|++..+++++.+ ...++++++++|+|||++++.+..
T Consensus 108 fD~v~~~~~l~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 108 FDLAYSSLALHYVED-------VARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ceEEEEeccccccch-------HHHHHHHHHHhcCcCcEEEEEeCC
Confidence 999999999999865 459999999999999999998754
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.7e-14 Score=145.87 Aligned_cols=117 Identities=17% Similarity=0.247 Sum_probs=98.9
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (771)
+..+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++ ..+++++++|+.+++
T Consensus 19 ~~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~-----~~~~~~~~~d~~~~~ 89 (261)
T 3ege_A 19 DIRIVNAIINLLNL---PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVV-----HPQVEWFTGYAENLA 89 (261)
T ss_dssp CHHHHHHHHHHHCC---CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCC-----CTTEEEECCCTTSCC
T ss_pred cHHHHHHHHHHhCC---CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHh-----ccCCEEEECchhhCC
Confidence 44566677777764 5788999999999999999998765 99999999988875432 238999999999999
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
+++++||+|++..+++++.+ ...++++++++|| ||++++.++..+.
T Consensus 90 ~~~~~fD~v~~~~~l~~~~~-------~~~~l~~~~~~Lk-gG~~~~~~~~~~~ 135 (261)
T 3ege_A 90 LPDKSVDGVISILAIHHFSH-------LEKSFQEMQRIIR-DGTIVLLTFDIRL 135 (261)
T ss_dssp SCTTCBSEEEEESCGGGCSS-------HHHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred CCCCCEeEEEEcchHhhccC-------HHHHHHHHHHHhC-CcEEEEEEcCCch
Confidence 99999999999999999865 4599999999999 9999998876443
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=132.67 Aligned_cols=100 Identities=19% Similarity=0.305 Sum_probs=89.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++ .+++++.+.| +++++++||+|++..++++
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~ 87 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK----FDSVITLSDP---KEIPDNSVDFILFANSFHD 87 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH----CTTSEEESSG---GGSCTTCEEEEEEESCSTT
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh----CCCcEEEeCC---CCCCCCceEEEEEccchhc
Confidence 4678999999999999999999876 999999999999988666 4689999999 6777899999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+.+ ...+++++.++|+|||++++.++..
T Consensus 88 ~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 88 MDD-------KQHVISEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp CSC-------HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccC-------HHHHHHHHHHhcCCCCEEEEEEcCc
Confidence 865 3599999999999999999998753
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=145.00 Aligned_cols=107 Identities=24% Similarity=0.393 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||||||+|.++..+++.+ ..+|+++|+|+.+++.++++....+ +++++.+.|+.++++++++||+|++..++
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 578899999999999999999884 3599999999999998888765544 57999999999999989999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++.++. .+++++.++|||||++++.+..
T Consensus 116 ~~~~~~~-------~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 116 EHLQSPE-------EALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp GGCSCHH-------HHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhcCCHH-------HHHHHHHHHcCCCcEEEEEEcC
Confidence 9987644 8999999999999999998743
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.6e-14 Score=146.39 Aligned_cols=110 Identities=25% Similarity=0.467 Sum_probs=94.7
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCcc
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFD 136 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFD 136 (771)
+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++. +++.+.++|+.++++ +++||
T Consensus 49 l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~-~~~fD 119 (279)
T 3ccf_A 49 LLQLLNP---QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY----PHLHFDVADARNFRV-DKPLD 119 (279)
T ss_dssp HHHHHCC---CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----TTSCEEECCTTTCCC-SSCEE
T ss_pred HHHHhCC---CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC----CCCEEEECChhhCCc-CCCcC
Confidence 5555553 5778999999999999999998655 9999999999999886654 679999999999987 58999
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+|++..+++++.+. ..++.+++++|||||++++......
T Consensus 120 ~v~~~~~l~~~~d~-------~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 120 AVFSNAMLHWVKEP-------EAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp EEEEESCGGGCSCH-------HHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEcchhhhCcCH-------HHHHHHHHHhcCCCcEEEEEecCCc
Confidence 99999999998764 4899999999999999999887643
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=144.99 Aligned_cols=107 Identities=16% Similarity=0.273 Sum_probs=94.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC-CCCCCccEEEecccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~-~~~~sFDlVi~~~~l 144 (771)
++.+|||||||+|.++..+++.+. +|+++|+|+.+++.++++....+ ++++++++|+.+++ +.+++||+|++.+++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 467999999999999999999977 99999999999999988775544 57999999999987 788999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+++.++ ..+++++.++|||||++++.++...
T Consensus 147 ~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (285)
T 4htf_A 147 EWVADP-------RSVLQTLWSVLRPGGVLSLMFYNAH 177 (285)
T ss_dssp GGCSCH-------HHHHHHHHHTEEEEEEEEEEEEBHH
T ss_pred hcccCH-------HHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 998764 4899999999999999999987643
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=145.37 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=103.3
Q ss_pred hhhhhccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEE
Q 004164 17 DLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITN 96 (771)
Q Consensus 17 ~lP~~~~~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~ 96 (771)
.+-..+..|....||+.+|.... .....-..........+.+++.. ...++.+|||||||+|..+..++..+..+|+|
T Consensus 22 ~~~~~y~~~~~~~y~~~~y~~~~-~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~g 99 (289)
T 2g72_A 22 AVASAYQRFEPRAYLRNNYAPPR-GDLCNPNGVGPWKLRCLAQTFAT-GEVSGRTLIDIGSGPTVYQLLSACSHFEDITM 99 (289)
T ss_dssp HHHHHGGGCCHHHHHHHHHSTTT-TCCSSTTSHHHHHHHHHHHHHHT-SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEE
T ss_pred HHHHHHhccCHHHHHHHHhcCcc-cchhhhhHHHHHHHHHHHHHhCC-CCCCCCeEEEECCCcChHHHHhhccCCCeEEE
Confidence 35555556777788888886541 11100000111122344455432 11367899999999999655444443459999
Q ss_pred EcCCHHHHHHHHHHhhcCCC-------------------------------CcEEEEeecCC-CCC-----CCCCccEEE
Q 004164 97 VDFSKVVISDMLRRNVRDRS-------------------------------DMRWRVMDMTS-MQF-----MDETFDVIL 139 (771)
Q Consensus 97 vDiS~~~i~~~~~~~~~~~~-------------------------------~i~~~~~D~~~-l~~-----~~~sFDlVi 139 (771)
+|+|+.|++.++++...... .+.++.+|+.+ +++ ++++||+|+
T Consensus 100 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~ 179 (289)
T 2g72_A 100 TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALV 179 (289)
T ss_dssp ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEE
T ss_pred eCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEE
Confidence 99999999988775432110 14577779988 553 456799999
Q ss_pred eccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+..+++++.... .....++++++++|||||+|++..
T Consensus 180 ~~~~l~~~~~~~---~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 180 SAFCLEAVSPDL---ASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp EESCHHHHCSSH---HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ehhhhhhhcCCH---HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999965431 116799999999999999999974
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=148.48 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC-------CcEEEEeec------CCC--CCCC
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-------DMRWRVMDM------TSM--QFMD 132 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~-------~i~~~~~D~------~~l--~~~~ 132 (771)
++.+|||||||+|..+..++..+..+|+|+|+|+.||+.|++++..... ++.|.+.|+ .++ ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 5789999999999877767666656999999999999999888754332 267888888 322 3567
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
++||+|++..+++++.+.+. ...++++++++|||||+|++.+.....+
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~----~~~~l~~~~r~LkpGG~~i~~~~~~~~~ 175 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRH----YATVMNNLSELTASGGKVLITTMDGDKL 175 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTT----HHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred CCeeEEEECchHHHhCCHHH----HHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 89999999999988654331 5699999999999999999998764443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.3e-14 Score=142.91 Aligned_cols=111 Identities=19% Similarity=0.098 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCCccEEEe-ccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILD-KGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDlVi~-~~~ 143 (771)
.++.+|||||||+|.++..+++.+..+|+++|+|+.+++.++++....+.++.++++|+.++ ++++++||+|++ ...
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 36789999999999999999887666899999999999999888766667899999999998 888999999998 444
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+ ...... ......++++++++|||||+|++.++.
T Consensus 139 ~-~~~~~~--~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 139 L-SEETWH--THQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp C-BGGGTT--THHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred c-chhhhh--hhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 222211 123567899999999999999987754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9e-13 Score=129.88 Aligned_cols=151 Identities=9% Similarity=0.078 Sum_probs=100.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCCccEEEec-cc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVILDK-GG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDlVi~~-~~ 143 (771)
.++.+|||+|||+|.++..|++.+. +|+++|+|+.+++.++++....+ .++++++.|+..++ +.+++||+|++. +.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 4688999999999999999999854 99999999999999988775444 68999998887753 457899999876 22
Q ss_pred cccccC-cccchHHHHHHHHHHHHccccCeEEEEEEcCcch-------hhcchhhhh-ccCcEEEEeecCCCCCCCCCCc
Q 004164 144 LDALME-PELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH-------VLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQ 214 (771)
Q Consensus 144 l~~l~~-~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~-------~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~ 214 (771)
+..... ..........+++++.++|||||+++++.+.... ......... ...|.+....... ....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~ 175 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLN----QINTP 175 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESS----CSSCC
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhc----cCCCC
Confidence 221000 0001122568899999999999999998875211 111122222 2356665544432 22355
Q ss_pred cEEEEEEE
Q 004164 215 TFMVVADK 222 (771)
Q Consensus 215 ~f~~v~~k 222 (771)
+|++++.|
T Consensus 176 ~~~~~i~~ 183 (185)
T 3mti_A 176 PFLVMLEK 183 (185)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEe
Confidence 66666655
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-13 Score=144.39 Aligned_cols=108 Identities=22% Similarity=0.276 Sum_probs=95.7
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecc
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~ 142 (771)
..++.+|||+|||+|.++..+++. +. +|+++|+|+.+++.++++....+ .+++++++|+.++++++++||+|++..
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 367889999999999999999988 65 89999999999999988776554 479999999999999899999999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+++++ + ...+++++.++|||||++++.+....
T Consensus 194 ~l~~~-~-------~~~~l~~~~~~LkpgG~l~~~~~~~~ 225 (312)
T 3vc1_A 194 STMYV-D-------LHDLFSEHSRFLKVGGRYVTITGCWN 225 (312)
T ss_dssp CGGGS-C-------HHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred chhhC-C-------HHHHHHHHHHHcCCCcEEEEEEcccc
Confidence 99998 3 35999999999999999999886533
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-13 Score=141.53 Aligned_cols=106 Identities=20% Similarity=0.288 Sum_probs=94.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.++++......++++.++|+.+++++ ++||+|++..++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l 99 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL 99 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECChh
Confidence 56789999999999999999987 2 25999999999999999888766666899999999999885 699999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++.+. ..++++++++|||||++++.+..
T Consensus 100 ~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHMTTP-------ETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGCSSH-------HHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCCCH-------HHHHHHHHHHcCCCCEEEEEecc
Confidence 998764 49999999999999999998865
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=136.84 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=103.0
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHH
Q 004164 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (771)
Q Consensus 28 ~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~ 107 (771)
.++|+..+.... ..|......+...+..++ .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.+
T Consensus 9 a~~yd~~~~~~~----~~~~~~~~~~~~~l~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a 78 (239)
T 3bxo_A 9 ADVYDLFYLGRG----KDYAAEASDIADLVRSRT-----PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHA 78 (239)
T ss_dssp HHHHHHHHHHHT----CCHHHHHHHHHHHHHHHC-----TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHH
T ss_pred HHHHHHHhhccH----hhHHHHHHHHHHHHHHhc-----CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHH
Confidence 568888775431 112222223334444444 3678999999999999999998876 999999999999988
Q ss_pred HHHhhcCCCCcEEEEeecCCCCCCCCCccEEEe-ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 108 LRRNVRDRSDMRWRVMDMTSMQFMDETFDVILD-KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 108 ~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~-~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++. +++.+.++|+.++++ +++||+|++ .++++++.+++ ....++++++++|+|||++++.++.
T Consensus 79 ~~~~----~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 79 RKRL----PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTE----ELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp HHHC----TTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHH----HHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred HHhC----CCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHH----HHHHHHHHHHHhcCCCeEEEEEecc
Confidence 7654 579999999999887 689999995 55888886533 2679999999999999999987654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.9e-13 Score=135.64 Aligned_cols=120 Identities=23% Similarity=0.316 Sum_probs=99.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (771)
+..+...+...+. ++.+|||+|||+|.++..+++. .+++++|+|+.+++.++++....+.++++.++|+.+++
T Consensus 20 ~~~~~~~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 92 (243)
T 3d2l_A 20 YPEWVAWVLEQVE-----PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE 92 (243)
T ss_dssp HHHHHHHHHHHSC-----TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC
T ss_pred HHHHHHHHHHHcC-----CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC
Confidence 3455556677764 4689999999999999999887 49999999999999998877666678999999999988
Q ss_pred CCCCCccEEEecc-ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 130 FMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 130 ~~~~sFDlVi~~~-~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++ ++||+|++.. +++++.+.+ ....+++++.++|+|||++++.....
T Consensus 93 ~~-~~fD~v~~~~~~~~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 93 LP-EPVDAITILCDSLNYLQTEA----DVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp CS-SCEEEEEECTTGGGGCCSHH----HHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CC-CCcCEEEEeCCchhhcCCHH----HHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 76 8999999986 888875433 26789999999999999999876553
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=139.63 Aligned_cols=114 Identities=21% Similarity=0.293 Sum_probs=93.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
..+...+..++. ++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.. . .+.++|+.++++
T Consensus 42 ~~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~---~--~~~~~d~~~~~~ 110 (260)
T 2avn_A 42 RLIGSFLEEYLK-----NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV---K--NVVEAKAEDLPF 110 (260)
T ss_dssp HHHHHHHHHHCC-----SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC---S--CEEECCTTSCCS
T ss_pred HHHHHHHHHhcC-----CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC---C--CEEECcHHHCCC
Confidence 334445555542 578999999999999999999876 99999999999998877653 1 289999999998
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++++||+|++.+++.++... ...+++++.++|+|||++++.....
T Consensus 111 ~~~~fD~v~~~~~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 111 PSGAFEAVLALGDVLSYVEN------KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp CTTCEEEEEECSSHHHHCSC------HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred CCCCEEEEEEcchhhhcccc------HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 88999999998877665322 4589999999999999999988764
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=143.10 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=95.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC-CCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF-MDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~-~~~sFDlVi~~~~ 143 (771)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+ .++.++++|+.++++ ++++||+|++..+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 3678999999999999999988877799999999999999988775443 368999999999887 6789999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
++++.... .....+++++.++|+|||++++.+.....+
T Consensus 143 l~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 180 (298)
T 1ri5_A 143 FHYAFSTS---ESLDIAQRNIARHLRPGGYFIMTVPSRDVI 180 (298)
T ss_dssp GGGGGSSH---HHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred hhhhcCCH---HHHHHHHHHHHHhcCCCCEEEEEECCHHHH
Confidence 98742111 126799999999999999999998765443
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.9e-13 Score=137.59 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++ .+++.+.++|+.+++ ++++||+|++..+++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 106 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----LPNTNFGKADLATWK-PAQKADLLYANAVFQ 106 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----STTSEEEECCTTTCC-CSSCEEEEEEESCGG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CCCcEEEECChhhcC-ccCCcCEEEEeCchh
Confidence 57789999999999999999987 234899999999999988665 468999999999988 788999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++.+ ...++.+++++|+|||++++.+..
T Consensus 107 ~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 107 WVPD-------HLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp GSTT-------HHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred hCCC-------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 9865 348999999999999999998854
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=139.72 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=95.9
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecc
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~ 142 (771)
..++.+|||||||+|.++..+++. | .+|+++|+|+.+++.++++....+ .++++.++|+.++ +++||+|++.+
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~ 145 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLG 145 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEES
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcc
Confidence 367889999999999999999998 7 499999999999999988876544 3799999999876 68999999999
Q ss_pred ccccccCccc--chHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 143 GLDALMEPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 143 ~l~~l~~~~~--~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+++++.+++. +......+++++.++|||||++++.++..+
T Consensus 146 ~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 146 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 9999976521 112367999999999999999999887644
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=137.82 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=95.2
Q ss_pred HhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCc
Q 004164 59 SLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 59 ~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sF 135 (771)
.++......++.+|||||||+|.++..+++. |. +|+++|+|+.+++.++++....+ +++++.++|+.+++ ++|
T Consensus 55 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~f 130 (287)
T 1kpg_A 55 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPV 130 (287)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCC
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCe
Confidence 3333333467889999999999999999854 66 99999999999999988775443 47999999998765 789
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
|+|++.++++++...+ ...++++++++|||||++++.+...
T Consensus 131 D~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHER-----YDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp SEEEEESCGGGTCTTT-----HHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred eEEEEeCchhhcChHH-----HHHHHHHHHHhcCCCCEEEEEEecC
Confidence 9999999999986433 5699999999999999999988764
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-12 Score=127.41 Aligned_cols=120 Identities=13% Similarity=-0.021 Sum_probs=96.7
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (771)
...+...+...+.. .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++....+ ++++++++|+.+
T Consensus 25 ~~~i~~~~l~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 101 (204)
T 3e05_A 25 KQEVRAVTLSKLRL---QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPE 101 (204)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTT
T ss_pred hHHHHHHHHHHcCC---CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhh
Confidence 34555566666654 578999999999999999999985 3699999999999998887765433 679999999976
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
.....++||+|++..+++. ...+++++.++|+|||++++......
T Consensus 102 ~~~~~~~~D~i~~~~~~~~----------~~~~l~~~~~~LkpgG~l~~~~~~~~ 146 (204)
T 3e05_A 102 GLDDLPDPDRVFIGGSGGM----------LEEIIDAVDRRLKSEGVIVLNAVTLD 146 (204)
T ss_dssp TCTTSCCCSEEEESCCTTC----------HHHHHHHHHHHCCTTCEEEEEECBHH
T ss_pred hhhcCCCCCEEEECCCCcC----------HHHHHHHHHHhcCCCeEEEEEecccc
Confidence 5444478999998877652 45899999999999999999876633
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-12 Score=127.41 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=110.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC-CCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-FMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~-~~~~sFDlVi~~ 141 (771)
.++.+|||+|||+|.++..+++. +.++|+++|+|+.+++.++++....+ ++++++++|+.+++ +.+++||+|++.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 46789999999999999999987 34599999999999999988776543 47999999998875 666899999987
Q ss_pred cccccccCc--ccchHHHHHHHHHHHHccccCeEEEEEEcCcch-------hhcchhhhh-ccCcEEEEeecCCCCCCCC
Q 004164 142 GGLDALMEP--ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH-------VLGLLFPKF-RFGWKMSVHAIPQKSSSEP 211 (771)
Q Consensus 142 ~~l~~l~~~--~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~-------~~~~l~~~~-~~~w~~~~~~i~~~~~~~~ 211 (771)
..+....+. .........+++++.++|+|||++++..+.... ....+.... ...|.+....... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~----~~ 176 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFIN----QA 176 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETT----CC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEecc----Cc
Confidence 655110000 001112457999999999999999998865211 111222222 2367776555543 33
Q ss_pred CCccEEEEEEEcCCc
Q 004164 212 SLQTFMVVADKENSS 226 (771)
Q Consensus 212 ~l~~f~~v~~k~~~~ 226 (771)
..++|.++.+|....
T Consensus 177 ~~pp~~~~~~~~~~~ 191 (197)
T 3eey_A 177 NCPPILVCIEKISEG 191 (197)
T ss_dssp SCCCEEEEEEECCSS
T ss_pred cCCCeEEEEEEcccc
Confidence 467788988876543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-13 Score=140.13 Aligned_cols=114 Identities=18% Similarity=0.092 Sum_probs=91.5
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFM 131 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~ 131 (771)
.+.+.+.+. .++.+|||||||+|..+..+++.+..+|++||+|+.+++.|+++......++.++.+|+.++ +++
T Consensus 50 m~~~a~~~~----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~ 125 (236)
T 3orh_A 50 MHALAAAAS----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP 125 (236)
T ss_dssp HHHHHHHHT----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC
T ss_pred HHHHHHhhc----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccccc
Confidence 344555554 37899999999999999999887656899999999999999888877777899999988764 578
Q ss_pred CCCccEEEecc-----ccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 132 DETFDVILDKG-----GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 132 ~~sFDlVi~~~-----~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+++||.|+... .+.++.+ ...++++++|+|||||+|++.+
T Consensus 126 ~~~FD~i~~D~~~~~~~~~~~~~-------~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 126 DGHFDGILYDTYPLSEETWHTHQ-------FNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp TTCEEEEEECCCCCBGGGTTTHH-------HHHHHHTHHHHEEEEEEEEECC
T ss_pred ccCCceEEEeeeecccchhhhcc-------hhhhhhhhhheeCCCCEEEEEe
Confidence 89999997432 2233222 5689999999999999998754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-13 Score=138.80 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=88.2
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC--
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF-- 130 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~-- 130 (771)
....+...+.. .++.+|||+|||+|.++..|++.|. +|+++|+|+.|++.++++.... ++..++.+++.
T Consensus 33 ~~~~il~~l~l---~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-----~v~~~~~~~~~~~ 103 (261)
T 3iv6_A 33 DRENDIFLENI---VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-----CVTIDLLDITAEI 103 (261)
T ss_dssp HHHHHHHTTTC---CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-----CCEEEECCTTSCC
T ss_pred HHHHHHHhcCC---CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-----cceeeeeeccccc
Confidence 34445555543 6788999999999999999999987 9999999999999888776433 34445544433
Q ss_pred ---CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 131 ---MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 131 ---~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.+++||+|++..+++++...+ ...++.++.++| |||++++...
T Consensus 104 ~~~~~~~fD~Vv~~~~l~~~~~~~-----~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 104 PKELAGHFDFVLNDRLINRFTTEE-----ARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CGGGTTCCSEEEEESCGGGSCHHH-----HHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ccccCCCccEEEEhhhhHhCCHHH-----HHHHHHHHHHhC-cCcEEEEEec
Confidence 257899999999999876444 678999999999 9999998754
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=138.56 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=96.5
Q ss_pred HhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCc
Q 004164 59 SLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 59 ~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sF 135 (771)
.++......++.+|||+|||+|.++..+++. |. +|+++|+|+.+++.++++....+ +++++.++|+.+++ ++|
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~f 156 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPV 156 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCC
T ss_pred HHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCc
Confidence 3333333467889999999999999999987 77 99999999999999988775544 46999999998875 789
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
|+|++.++++++...+ ...+++++.++|||||++++.+...+
T Consensus 157 D~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHEN-----YDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp SEEEEESCGGGTCGGG-----HHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred CEEEEeChHHhcCHHH-----HHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 9999999999986433 56999999999999999999887643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=126.23 Aligned_cols=137 Identities=16% Similarity=0.155 Sum_probs=100.5
Q ss_pred CCCCeEEEEcCC-cchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-CCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCG-NSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-QFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG-~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l-~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+||| +|.++..++.....+|+++|+|+.+++.+++.....+.+++++++|+..+ ++++++||+|+++..+
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence 478999999999 99999999988334999999999999999887766556899999997654 4567899999988665
Q ss_pred ccccCcc------------cchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh-ccCcEEEEeec
Q 004164 145 DALMEPE------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAI 203 (771)
Q Consensus 145 ~~l~~~~------------~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~i 203 (771)
+...... .+......+++++.++|||||++++...........+...+ ..+|.+....+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEe
Confidence 5433211 11222478999999999999999997755433334444444 44777666554
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-12 Score=134.20 Aligned_cols=147 Identities=13% Similarity=0.084 Sum_probs=102.8
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhH-HHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEE
Q 004164 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS-EHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWR 121 (771)
Q Consensus 44 ~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls-~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~ 121 (771)
|-+|..|..+...-..++.. .++.+|||||||+|.++ ..+++....+|+++|+|+.+++.|+++....+ .+++|+
T Consensus 101 fpy~~~~~~l~~~E~~la~l---~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v 177 (298)
T 3fpf_A 101 FYFYPRYLELLKNEAALGRF---RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVI 177 (298)
T ss_dssp STTHHHHHHHHHHHHHHTTC---CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCcccHHHHHHHHHHHcCC---CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEE
Confidence 33444444444443344433 68999999999999876 44555433499999999999999988765433 689999
Q ss_pred EeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc-hhhcc-hhhhhccCcEEE
Q 004164 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES-HVLGL-LFPKFRFGWKMS 199 (771)
Q Consensus 122 ~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~-~~~~~-l~~~~~~~w~~~ 199 (771)
++|+.+++ +++||+|+..+. .. + ..++++++.++|||||++++...... ....+ .......+|...
T Consensus 178 ~gDa~~l~--d~~FDvV~~~a~---~~--d-----~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~gf~~~ 245 (298)
T 3fpf_A 178 TGDETVID--GLEFDVLMVAAL---AE--P-----KRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRA 245 (298)
T ss_dssp ESCGGGGG--GCCCSEEEECTT---CS--C-----HHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGTTEEEE
T ss_pred ECchhhCC--CCCcCEEEECCC---cc--C-----HHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhhhhhhe
Confidence 99999875 689999997554 22 2 45999999999999999999875421 11111 112334478777
Q ss_pred EeecCC
Q 004164 200 VHAIPQ 205 (771)
Q Consensus 200 ~~~i~~ 205 (771)
....+.
T Consensus 246 ~~~~p~ 251 (298)
T 3fpf_A 246 GVVLPS 251 (298)
T ss_dssp EEECCC
T ss_pred eEECCC
Confidence 666654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.9e-13 Score=142.15 Aligned_cols=108 Identities=15% Similarity=0.093 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCcchhHHHH----Hhc-CCCeE--EEEcCCHHHHHHHHHHhhcC--CCCcEE--EEeecCCCC------
Q 004164 67 SPPPQILVPGCGNSRLSEHL----YDA-GFHGI--TNVDFSKVVISDMLRRNVRD--RSDMRW--RVMDMTSMQ------ 129 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~L----a~~-g~~~V--~~vDiS~~~i~~~~~~~~~~--~~~i~~--~~~D~~~l~------ 129 (771)
.++.+|||||||+|.++..+ +.. +...| +++|+|+.|++.+++++... .+++.+ ..+++.+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 46779999999999876543 332 22334 99999999999988876542 234544 455555443
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++++||+|++..+++++.++. .+|++++++|||||++++.....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIP-------ATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHH-------HHHHHHHHTEEEEEEEEEEEECT
T ss_pred cCCCceeEEEEeeeeeecCCHH-------HHHHHHHHHcCCCcEEEEEEecC
Confidence 5678999999999999998754 89999999999999999987654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=132.17 Aligned_cols=98 Identities=21% Similarity=0.245 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||+|.++..++.. +++|+|+.+++.++++ ++.+.++|+.++++++++||+|++..+++++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 115 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFV 115 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc------CCEEEEcccccCCCCCCCeeEEEEcchHhhc
Confidence 3789999999999999988654 9999999999877654 6899999999999888899999999999998
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.+. ..+++++.++|+|||++++.+.....
T Consensus 116 ~~~-------~~~l~~~~~~L~pgG~l~i~~~~~~~ 144 (219)
T 1vlm_A 116 DDP-------ERALKEAYRILKKGGYLIVGIVDRES 144 (219)
T ss_dssp SCH-------HHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred cCH-------HHHHHHHHHHcCCCcEEEEEEeCCcc
Confidence 653 48999999999999999998876433
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=131.94 Aligned_cols=101 Identities=23% Similarity=0.320 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC---CCCC-CCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM---QFMD-ETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l---~~~~-~sFDlVi~~~ 142 (771)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++ .++.+.+.|+.++ ++.. ++||+|++..
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~ 124 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICANF 124 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEECc
Confidence 3568999999999999999999877 999999999999877654 5678899888876 4444 4599999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++ ..+. ..++++++++|+|||++++.+...
T Consensus 125 ~l~-~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 125 ALL-HQDI-------IELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp CCC-SSCC-------HHHHHHHHHTEEEEEEEEEEECCT
T ss_pred hhh-hhhH-------HHHHHHHHHHhCCCeEEEEEecCc
Confidence 999 4443 489999999999999999998764
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.9e-12 Score=126.38 Aligned_cols=117 Identities=13% Similarity=0.054 Sum_probs=93.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-C-CcEEEEeecCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTSM 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~-~i~~~~~D~~~l 128 (771)
..+...+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++....+ + +++++++|+.+.
T Consensus 41 ~~~~~~~l~~l~~---~~~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 116 (204)
T 3njr_A 41 SPMRALTLAALAP---RRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred HHHHHHHHHhcCC---CCCCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence 3555566666654 5788999999999999999999854 99999999999998887765544 3 799999999884
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.....+||+|++.+.+ . .. +++++.++|+|||++++.....+.
T Consensus 117 ~~~~~~~D~v~~~~~~------~-----~~-~l~~~~~~LkpgG~lv~~~~~~~~ 159 (204)
T 3njr_A 117 LADLPLPEAVFIGGGG------S-----QA-LYDRLWEWLAPGTRIVANAVTLES 159 (204)
T ss_dssp GTTSCCCSEEEECSCC------C-----HH-HHHHHHHHSCTTCEEEEEECSHHH
T ss_pred cccCCCCCEEEECCcc------c-----HH-HHHHHHHhcCCCcEEEEEecCccc
Confidence 3334689999987643 1 34 899999999999999998876444
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-13 Score=145.46 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=92.5
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (771)
+...+.+.+.. .++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.++++....+ ++++++++|+.++++
T Consensus 52 ~~~~i~~~~~~---~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 127 (340)
T 2fyt_A 52 YRDFIYQNPHI---FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL 127 (340)
T ss_dssp HHHHHHHCGGG---TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred HHHHHHhhhhh---cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC
Confidence 34445555433 46789999999999999999999877999999997 8988877765444 579999999999988
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
++++||+|++....+.+.... ....++.++.++|||||+++
T Consensus 128 ~~~~~D~Ivs~~~~~~l~~~~----~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 128 PVEKVDVIISEWMGYFLLFES----MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCSCEEEEEECCCBTTBTTTC----HHHHHHHHHHHHEEEEEEEE
T ss_pred CCCcEEEEEEcCchhhccCHH----HHHHHHHHHHhhcCCCcEEE
Confidence 888999999987544443322 25689999999999999987
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=130.24 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=86.0
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-- 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l-- 128 (771)
.+...+...+. ....++.+|||+|||+|..+..+++. +.++|+|+|+|+.+++.+.+.+.. ..++.++++|+...
T Consensus 42 ~l~~~~~~~l~-~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-~~~v~~~~~d~~~~~~ 119 (210)
T 1nt2_A 42 KLAAMILKGHR-LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWK 119 (210)
T ss_dssp HHHHHHHTSCC-CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGG
T ss_pred HHHHHHHhhcc-cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-CCCeEEEEcCCCCchh
Confidence 33344444443 23357889999999999999999887 335899999999998877766543 35789999999874
Q ss_pred --CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 129 --QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 129 --~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++. ++||+|++.. ..+. ....++.+++++|||||+|++..
T Consensus 120 ~~~~~-~~fD~V~~~~-----~~~~----~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 120 YSGIV-EKVDLIYQDI-----AQKN----QIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp TTTTC-CCEEEEEECC-----CSTT----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccc-cceeEEEEec-----cChh----HHHHHHHHHHHHhCCCCEEEEEE
Confidence 444 7999999862 1111 13456999999999999999985
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=132.85 Aligned_cols=136 Identities=11% Similarity=0.038 Sum_probs=102.1
Q ss_pred CCCHhhHHHHHh--hcCCCCccccc--cchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCC
Q 004164 25 FTSKENWDKFFT--IRGIGDSFEWY--AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFS 100 (771)
Q Consensus 25 f~~~~yWd~~y~--~~~~~~~~ew~--~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS 100 (771)
|....+|+..|. .. ..++... ...+.+...+...+.. .++.+|||+|||+|.++..+++.+ .+|+++|+|
T Consensus 28 f~~~~~~~~~Y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~ 101 (231)
T 1vbf_A 28 FLPENLKDYAYAHTHE--ALPILPGINTTALNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEIN 101 (231)
T ss_dssp HSCGGGGGGSSSSTTC--CEEEETTEEECCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESC
T ss_pred cCCcchhhhccccCCC--ceeeCCCCccCCHHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCC
Confidence 445567776666 32 1111111 1233555566666654 578899999999999999999987 599999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 101 KVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 101 ~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.+++.++++....+ +++++++|+.+....+++||+|++..+++++. .++.++|+|||++++....
T Consensus 102 ~~~~~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-------------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 102 EKMYNYASKLLSYYN-NIKLILGDGTLGYEEEKPYDRVVVWATAPTLL-------------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp HHHHHHHHHHHTTCS-SEEEEESCGGGCCGGGCCEEEEEESSBBSSCC-------------HHHHHTEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHhhcC-CeEEEECCcccccccCCCccEEEECCcHHHHH-------------HHHHHHcCCCcEEEEEEcC
Confidence 999999887775444 89999999987433467899999999998763 3688999999999998754
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=131.15 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=94.7
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (771)
.+.....+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++....+ .++++..+|+.+.
T Consensus 62 ~~~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 137 (210)
T 3lbf_A 62 QPYMVARMTELLEL---TPQSRVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQG 137 (210)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence 34555566666654 6789999999999999999999855 99999999999999987765543 5799999999987
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
..++++||+|++..+++++.+ ++.++|+|||++++....
T Consensus 138 ~~~~~~~D~i~~~~~~~~~~~-------------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 138 WQARAPFDAIIVTAAPPEIPT-------------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CGGGCCEEEEEESSBCSSCCT-------------HHHHTEEEEEEEEEEECS
T ss_pred CccCCCccEEEEccchhhhhH-------------HHHHhcccCcEEEEEEcC
Confidence 666789999999999988752 478999999999988754
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=144.46 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcC---------CCCcEEEEeecCCC------C
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD---------RSDMRWRVMDMTSM------Q 129 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~---------~~~i~~~~~D~~~l------~ 129 (771)
.++.+|||+|||+|.++..+++. ...+|+++|+|+.+++.++++.... .++++|+++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 46789999999999999999886 2359999999999999887765322 26899999999997 8
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++++||+|++..+++++.+. ..++++++++|||||++++.+..
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~-------~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK-------LALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH-------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchhcCCCH-------HHHHHHHHHHcCCCCEEEEEEec
Confidence 889999999999999998763 49999999999999999998754
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=127.00 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (771)
...+...+...+.. .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++++....+ .++.+.++|+.+
T Consensus 18 ~~~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 93 (192)
T 1l3i_A 18 AMEVRCLIMCLAEP---GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE 93 (192)
T ss_dssp CHHHHHHHHHHHCC---CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred hHHHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH
Confidence 34556666666654 578899999999999999999888 699999999999998877665443 478999999877
Q ss_pred CCCCC-CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 128 MQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 128 l~~~~-~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
++++ ++||+|++.+++++ ...+++++.++|+|||++++.....+.
T Consensus 94 -~~~~~~~~D~v~~~~~~~~----------~~~~l~~~~~~l~~gG~l~~~~~~~~~ 139 (192)
T 1l3i_A 94 -ALCKIPDIDIAVVGGSGGE----------LQEILRIIKDKLKPGGRIIVTAILLET 139 (192)
T ss_dssp -HHTTSCCEEEEEESCCTTC----------HHHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred -hcccCCCCCEEEECCchHH----------HHHHHHHHHHhcCCCcEEEEEecCcch
Confidence 3333 58999999877654 358999999999999999998876433
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=139.37 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=87.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-------------------------------
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR------------------------------- 115 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~------------------------------- 115 (771)
++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.++++.....
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 5789999999999999999987 44599999999999998877643221
Q ss_pred ----------------------------CCcEEEEeecCCCC-----CCCCCccEEEeccccccccCcccchHHHHHHHH
Q 004164 116 ----------------------------SDMRWRVMDMTSMQ-----FMDETFDVILDKGGLDALMEPELGHKLGNQYLS 162 (771)
Q Consensus 116 ----------------------------~~i~~~~~D~~~l~-----~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~ 162 (771)
.+++|.++|+...+ +.+++||+|++..+++|+.-. .+.....++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~-~~~~~~~~~l~ 204 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLN-WGDEGLKRMFR 204 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHH-HHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhc-CCHHHHHHHHH
Confidence 47999999998654 567899999999999776300 01112779999
Q ss_pred HHHHccccCeEEEEEE
Q 004164 163 EVKRLLKSGGKFVCLT 178 (771)
Q Consensus 163 ~i~rvLkpGG~~ii~~ 178 (771)
+++++|+|||+|++..
T Consensus 205 ~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHhCCCcEEEEec
Confidence 9999999999999864
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=128.67 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=89.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCCccEEEecccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGGL 144 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l 144 (771)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+ .+++++++|+.++. +++++||+|++...+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 678999999999999998888887789999999999998887765444 58999999998863 457899999998776
Q ss_pred ccccCcccchHHHHHHHHHHHH--ccccCeEEEEEEcCc
Q 004164 145 DALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLAE 181 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~r--vLkpGG~~ii~~~~~ 181 (771)
++.. . ....++.++.+ +|+|||++++.+...
T Consensus 124 ~~~~-~-----~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 124 NVDS-A-----DVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TSCH-H-----HHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred Ccch-h-----hHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 5531 1 26689999999 999999999987653
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-12 Score=128.95 Aligned_cols=125 Identities=21% Similarity=0.251 Sum_probs=99.9
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~ 122 (771)
.|......+...+..-+.....+|+.+|||+|||+|.++..+++. |. ++|+++|+|+.|++.+++++ ...+++..+.
T Consensus 54 ~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a-~~~~ni~~V~ 132 (233)
T 4df3_A 54 EWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVV-RDRRNIFPIL 132 (233)
T ss_dssp ECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHS-TTCTTEEEEE
T ss_pred eECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh-HhhcCeeEEE
Confidence 477777777777777777667789999999999999999999987 54 78999999999999887765 4457899999
Q ss_pred eecCCC---CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 123 MDMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 123 ~D~~~l---~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.|.... ++..+++|+|++..... .+ ...++.+++++|||||+++++..
T Consensus 133 ~d~~~p~~~~~~~~~vDvVf~d~~~~----~~-----~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 133 GDARFPEKYRHLVEGVDGLYADVAQP----EQ-----AAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp SCTTCGGGGTTTCCCEEEEEECCCCT----TH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeccCccccccccceEEEEEEeccCC----hh-----HHHHHHHHHHhccCCCEEEEEEe
Confidence 988764 46678999998532211 11 46899999999999999988653
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-12 Score=137.42 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc--------CCCCcEEEEeecCCCC----CC--CC
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--------DRSDMRWRVMDMTSMQ----FM--DE 133 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~--------~~~~i~~~~~D~~~l~----~~--~~ 133 (771)
++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++... ...++.++++|+.+++ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 5789999999999999999887666999999999999988877643 2246899999999876 54 45
Q ss_pred CccEEEeccccccc-cCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 134 TFDVILDKGGLDAL-MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 134 sFDlVi~~~~l~~l-~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
+||+|++..+++++ .+.+ ....++.+++++|+|||++++.+...+.+
T Consensus 114 ~fD~V~~~~~l~~~~~~~~----~~~~~l~~~~~~LkpgG~li~~~~~~~~l 161 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYE----QADMMLRNACERLSPGGYFIGTTPNSFEL 161 (313)
T ss_dssp CEEEEEEETCGGGGGGSHH----HHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred CEEEEEEecchhhccCCHH----HHHHHHHHHHHHhCCCcEEEEecCChHHH
Confidence 99999999999987 3322 25699999999999999999998875443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=139.43 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=93.9
Q ss_pred CCCCeEEEEcCCcchhHHHHH--hcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLY--DAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La--~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~ 142 (771)
.++.+|||+|||+|..+..++ ..+..+|+++|+|+.+++.++++....+ .+++++++|+.+++++ ++||+|++.+
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 468899999999999999985 3334599999999999999988775544 3499999999999887 9999999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+++++.++. ....++++++++|||||++++.++..+
T Consensus 196 ~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~ 231 (305)
T 3ocj_A 196 LNIYEPDDA----RVTELYRRFWQALKPGGALVTSFLTPP 231 (305)
T ss_dssp SGGGCCCHH----HHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred hhhhcCCHH----HHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 999987654 245689999999999999999876543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-12 Score=129.34 Aligned_cols=91 Identities=14% Similarity=0.238 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeec-CCCCCC-CCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM-TSMQFM-DETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~-~~l~~~-~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++ .++++++++|+ ..++++ +++||+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~--- 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN----APHADVYEWNGKGELPAGLGAPFGLIVSR--- 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH----CTTSEEEECCSCSSCCTTCCCCEEEEEEE---
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh----CCCceEEEcchhhccCCcCCCCEEEEEeC---
Confidence 3678999999999999999999976 999999999999988666 46899999999 567887 8999999986
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
.+. ..++.++.++|||||+++
T Consensus 119 ---~~~-------~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 ---RGP-------TSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---SCC-------SGGGGGHHHHEEEEEEEE
T ss_pred ---CCH-------HHHHHHHHHHcCCCcEEE
Confidence 222 277999999999999999
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.1e-12 Score=121.48 Aligned_cols=133 Identities=10% Similarity=0.129 Sum_probs=101.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~ 129 (771)
..+...+...+.. .++.+|||+|||+|.++..+++ +..+++++|+|+.+++.++++....+ ++++++++|+.+ +
T Consensus 21 ~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~ 95 (183)
T 2yxd_A 21 EEIRAVSIGKLNL---NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V 95 (183)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H
T ss_pred HHHHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c
Confidence 4555566666654 5778999999999999999998 45599999999999998887765544 579999999988 6
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh-ccCcEEEEee
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHA 202 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~ 202 (771)
+++++||+|++..+ . . ...+++++.++ |||++++.+.......+ +...+ ..+|.+....
T Consensus 96 ~~~~~~D~i~~~~~----~--~-----~~~~l~~~~~~--~gG~l~~~~~~~~~~~~-~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 96 LDKLEFNKAFIGGT----K--N-----IEKIIEILDKK--KINHIVANTIVLENAAK-IINEFESRGYNVDAVN 155 (183)
T ss_dssp GGGCCCSEEEECSC----S--C-----HHHHHHHHHHT--TCCEEEEEESCHHHHHH-HHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEECCc----c--c-----HHHHHHHHhhC--CCCEEEEEecccccHHH-HHHHHHHcCCeEEEEE
Confidence 77789999999877 1 1 45889999999 99999999876444322 33333 3357666543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=141.76 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=88.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.++++....+ .+++++++|+.++++++++||+|++....
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 36789999999999999999999888999999995 9998887765544 34999999999999888999999998765
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii 176 (771)
+.+.... ....++.++.++|||||+++.
T Consensus 144 ~~l~~~~----~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYES----MLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTC----CHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCch----hHHHHHHHHHHhCCCCCEEcc
Confidence 5553322 166899999999999999873
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=120.46 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=91.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-C-CcEEEEeecCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTS 127 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~-~i~~~~~D~~~ 127 (771)
..+...+...+.. .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++....+ + ++ +++.|+.+
T Consensus 11 ~~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~ 86 (178)
T 3hm2_A 11 QHVRALAISALAP---KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHHHCC---CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred HHHHHHHHHHhcc---cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence 3445556666654 57789999999999999999887 34589999999999998887765443 3 67 88888754
Q ss_pred -CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 128 -MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 128 -l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
++..+++||+|++..++++ . .+++++.++|+|||++++.+...+.
T Consensus 87 ~~~~~~~~~D~i~~~~~~~~----~-------~~l~~~~~~L~~gG~l~~~~~~~~~ 132 (178)
T 3hm2_A 87 AFDDVPDNPDVIFIGGGLTA----P-------GVFAAAWKRLPVGGRLVANAVTVES 132 (178)
T ss_dssp GGGGCCSCCSEEEECC-TTC----T-------THHHHHHHTCCTTCEEEEEECSHHH
T ss_pred hhhccCCCCCEEEECCcccH----H-------HHHHHHHHhcCCCCEEEEEeecccc
Confidence 2332389999999888876 2 6799999999999999998876443
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.32 E-value=9.7e-12 Score=127.41 Aligned_cols=106 Identities=16% Similarity=0.255 Sum_probs=85.4
Q ss_pred hCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC----CCCCCCCc
Q 004164 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS----MQFMDETF 135 (771)
Q Consensus 61 l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~----l~~~~~sF 135 (771)
+......++.+|||+|||+|.++..+++. |..+|+++|+|+.+++.+++++... +++.++++|+.+ .++. ++|
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~ 144 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIV-EKV 144 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTS-CCE
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccccC-ccE
Confidence 44333357889999999999999999987 5469999999999999887765443 789999999998 6666 789
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
|+|+ +++..+. ....++.++.++|+|||++++.
T Consensus 145 D~v~-----~~~~~~~----~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 145 DVIY-----EDVAQPN----QAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEE-----ECCCSTT----HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEE-----EecCChh----HHHHHHHHHHHhCCCCcEEEEE
Confidence 9999 2333332 2457899999999999999986
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=124.20 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++....+ .++++.++|+.+. .+++||+|++...++
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVANILAE 136 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEESCHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEECCcHH
Confidence 3678999999999999999998877799999999999998887765544 3499999999775 358999999987766
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+ ...+++++.++|+|||++++.++...
T Consensus 137 ~----------~~~~l~~~~~~L~~gG~l~~~~~~~~ 163 (205)
T 3grz_A 137 I----------LLDLIPQLDSHLNEDGQVIFSGIDYL 163 (205)
T ss_dssp H----------HHHHGGGSGGGEEEEEEEEEEEEEGG
T ss_pred H----------HHHHHHHHHHhcCCCCEEEEEecCcc
Confidence 5 35889999999999999999876543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-12 Score=128.78 Aligned_cols=109 Identities=18% Similarity=0.293 Sum_probs=91.3
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC--CCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS--MQFMDE 133 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~--l~~~~~ 133 (771)
.+.+++. .++.+|||+|||+|.++..+++.| .+++++|+|+.+++.++++. ..+.++|+.+ .+++++
T Consensus 24 ~l~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~~~~~~~ 92 (230)
T 3cc8_A 24 NLLKHIK----KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMDMPYEEE 92 (230)
T ss_dssp HHHTTCC----TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS------SEEEESCTTTCCCCSCTT
T ss_pred HHHHHhc----cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcCCCCCCC
Confidence 3555553 367899999999999999999887 59999999999998775443 3789999987 567788
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+||+|++..+++++.++ ..++.++.++|+|||++++......
T Consensus 93 ~fD~v~~~~~l~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 93 QFDCVIFGDVLEHLFDP-------WAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp CEEEEEEESCGGGSSCH-------HHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred ccCEEEECChhhhcCCH-------HHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 99999999999998764 4899999999999999999876543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.4e-12 Score=131.54 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCcch----hHHHHHhc-C----CCeEEEEcCCHHHHHHHHHHhh--------------------c---CC
Q 004164 68 PPPQILVPGCGNSR----LSEHLYDA-G----FHGITNVDFSKVVISDMLRRNV--------------------R---DR 115 (771)
Q Consensus 68 ~~~~ILDiGCG~G~----ls~~La~~-g----~~~V~~vDiS~~~i~~~~~~~~--------------------~---~~ 115 (771)
+..+|||+|||+|. ++..|++. + ..+|+|+|+|+.||+.|++..- . .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 55666664 3 1389999999999998876531 0 00
Q ss_pred ---------CCcEEEEeecCCCCCC-CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEE
Q 004164 116 ---------SDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (771)
Q Consensus 116 ---------~~i~~~~~D~~~l~~~-~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii 176 (771)
.++.|.+.|+.+.+++ .++||+|+|..++.++.... ..+++.++++.|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~-----~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT-----QEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH-----HHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHH-----HHHHHHHHHHHhCCCcEEEE
Confidence 3689999999987665 57899999999999985433 67999999999999999987
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-12 Score=130.92 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHH------HHHHHHHHhhcCC--CCcEEEEee---cCCCCCCCC
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKV------VISDMLRRNVRDR--SDMRWRVMD---MTSMQFMDE 133 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~------~i~~~~~~~~~~~--~~i~~~~~D---~~~l~~~~~ 133 (771)
.++.+|||||||+|.++..+++. |. .+|+++|+|+. +++.++++....+ +++++.++| ...++++++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 121 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ 121 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence 57889999999999999999987 43 59999999997 8988887775544 579999998 455677889
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+||+|++.++++++.++. .+++.+.++++|||++++.++..
T Consensus 122 ~fD~v~~~~~l~~~~~~~-------~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 122 HFDRVVLAHSLWYFASAN-------ALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp CCSEEEEESCGGGSSCHH-------HHHHHHHHHTTTCSEEEEEEECS
T ss_pred CEEEEEEccchhhCCCHH-------HHHHHHHHHhCCCCEEEEEEecC
Confidence 999999999999987653 57777778888899999998764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.4e-12 Score=130.99 Aligned_cols=99 Identities=24% Similarity=0.340 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++. +++.+..+|+.++++++++||+|++..+.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLPFSDTSMDAIIRIYAP-- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCSBCTTCEEEEEEESCC--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhCCCCCCceeEEEEeCCh--
Confidence 6789999999999999999987 2349999999999999876553 57899999999999888999999975431
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
..+.++.++|||||++++.+....++
T Consensus 159 ------------~~l~~~~~~L~pgG~l~~~~~~~~~~ 184 (269)
T 1p91_A 159 ------------CKAEELARVVKPGGWVITATPGPRHL 184 (269)
T ss_dssp ------------CCHHHHHHHEEEEEEEEEEEECTTTT
T ss_pred ------------hhHHHHHHhcCCCcEEEEEEcCHHHH
Confidence 34899999999999999998876554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=121.49 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=96.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CC--cEEEEeecCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SD--MRWRVMDMTSM 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~--i~~~~~D~~~l 128 (771)
.....+.+.+.. .++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+ .+ +++.++|+.+.
T Consensus 39 ~~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~ 114 (194)
T 1dus_A 39 KGTKILVENVVV---DKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN 114 (194)
T ss_dssp HHHHHHHHHCCC---CTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred hHHHHHHHHccc---CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc
Confidence 445566677654 5788999999999999999998844 99999999999998887765443 33 99999999884
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+++++||+|++...+++.. .....+++++.++|+|||++++.+....
T Consensus 115 -~~~~~~D~v~~~~~~~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 115 -VKDRKYNKIITNPPIRAGK------EVLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp -CTTSCEEEEEECCCSTTCH------HHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred -cccCCceEEEECCCcccch------hHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 4567999999987766511 1266899999999999999999987743
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.4e-12 Score=145.55 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=97.2
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhc-------CCCCcEEEEeec
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVR-------DRSDMRWRVMDM 125 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~-------~~~~i~~~~~D~ 125 (771)
..+.+++.. .++.+|||||||+|.++..|++.+. .+|+|+|+|+.+++.++++... ..++++|+++|+
T Consensus 711 e~LLelL~~---~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa 787 (950)
T 3htx_A 711 EYALKHIRE---SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI 787 (950)
T ss_dssp HHHHHHHHH---SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred HHHHHHhcc---cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence 345555543 4678999999999999999999862 5999999999999998775431 235799999999
Q ss_pred CCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 126 ~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.++++.+++||+|++..+++|+.++. ...+++++.++|||| .+++.+..
T Consensus 788 ~dLp~~d~sFDlVV~~eVLeHL~dp~-----l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 788 LEFDSRLHDVDIGTCLEVIEHMEEDQ-----ACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp TSCCTTSCSCCEEEEESCGGGSCHHH-----HHHHHHHHHHTTCCS-EEEEEECB
T ss_pred HhCCcccCCeeEEEEeCchhhCChHH-----HHHHHHHHHHHcCCC-EEEEEecC
Confidence 99999999999999999999987654 567999999999999 77777755
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=129.58 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=96.7
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEE
Q 004164 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWR 121 (771)
Q Consensus 44 ~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~ 121 (771)
+.|+......+..+..++. ++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.+++.+...+ .+++++
T Consensus 106 ~~f~~~~~~~~~~l~~~~~-----~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~ 180 (278)
T 2frn_A 106 IMFSPANVKERVRMAKVAK-----PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 180 (278)
T ss_dssp SCCCGGGHHHHHHHHHHCC-----TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred eeEcCCcHHHHHHHHHhCC-----CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE
Confidence 3455555555666666653 688999999999999999999877579999999999998877665443 348999
Q ss_pred EeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 122 ~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++|+.++.. +++||+|++..... ...++.++.++|+|||++++.+...
T Consensus 181 ~~D~~~~~~-~~~fD~Vi~~~p~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 181 NMDNRDFPG-ENIADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp CSCTTTCCC-CSCEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ECCHHHhcc-cCCccEEEECCchh-----------HHHHHHHHHHHCCCCeEEEEEEeec
Confidence 999999876 68999999853311 2377999999999999999988874
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-12 Score=125.50 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCCCC--CCCC-ccEEEec
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQF--MDET-FDVILDK 141 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~~D~~~l~~--~~~s-FDlVi~~ 141 (771)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++...+ ++++++++|+.++.. .+++ ||+|++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 568999999999999999888877799999999999999887765554 479999999987532 3678 9999987
Q ss_pred cccccccCcccchHHHHHHHHHH--HHccccCeEEEEEEcCc
Q 004164 142 GGLDALMEPELGHKLGNQYLSEV--KRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i--~rvLkpGG~~ii~~~~~ 181 (771)
..++ . .. ...++..+ .++|+|||++++.....
T Consensus 133 ~~~~-~--~~-----~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH-F--NL-----AEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS-S--CH-----HHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-C--cc-----HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 7643 1 11 45778888 67899999999887653
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.3e-12 Score=128.41 Aligned_cols=115 Identities=13% Similarity=0.066 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc-------CCCCcEEEEeecCC-CC--CCCCCc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-------DRSDMRWRVMDMTS-MQ--FMDETF 135 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~-------~~~~i~~~~~D~~~-l~--~~~~sF 135 (771)
.++.+|||||||+|.++..|+.. +..+|+|+|+|+.+++.++++... ...++.++++|+.+ ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 35679999999999999999987 345899999999999988765432 23689999999987 66 778999
Q ss_pred cEEEeccccccccCcccc-hHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 136 DVILDKGGLDALMEPELG-HKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~-~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
|.|+....-.+....... ......+++++.++|||||.|++.+...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~ 171 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL 171 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence 999864332221100000 0001479999999999999999988653
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-11 Score=122.63 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=87.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCCccEEEeccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGG 143 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDlVi~~~~ 143 (771)
++.+|||||||+|.++..++... ..+++|+|+|+.+++.++++....+ .++.++++|+.+++ +++++||+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 57899999999999999999873 3599999999999998887765444 68999999999876 77889999998754
Q ss_pred cccccCcccc-hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELG-HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~-~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
..+....... ......++.++.++|+|||++++.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3321100000 001357999999999999999998754
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-11 Score=125.07 Aligned_cols=124 Identities=18% Similarity=0.276 Sum_probs=91.6
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~ 123 (771)
|..........+...+......++.+|||+|||+|.++..|++. | ..+|+++|+|+.+++.+.+.+... ++++++++
T Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~ 133 (233)
T 2ipx_A 55 WNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIE 133 (233)
T ss_dssp CCTTTCHHHHHHHTTCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECS
T ss_pred ecccchhHHHHHHhHHheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEc
Confidence 44433333334444344433467889999999999999999987 3 369999999999988887666443 78999999
Q ss_pred ecCC---CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 124 DMTS---MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 124 D~~~---l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|+.+ +++.+++||+|++... .++ ....++.++.++|||||++++...
T Consensus 134 d~~~~~~~~~~~~~~D~V~~~~~-----~~~----~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 134 DARHPHKYRMLIAMVDVIFADVA-----QPD----QTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CTTCGGGGGGGCCCEEEEEECCC-----CTT----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCChhhhcccCCcEEEEEEcCC-----Ccc----HHHHHHHHHHHHcCCCeEEEEEEc
Confidence 9988 4456789999998543 222 134678899999999999999544
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-11 Score=117.67 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||+|.++..+++.+ +|+|+|+|+.+++. ..+++++++|+.+ ++++++||+|+++..+++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~--------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~ 91 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES--------HRGGNLVRADLLC-SINQESVDVVVFNPPYVPD 91 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT--------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc--------ccCCeEEECChhh-hcccCCCCEEEECCCCccC
Confidence 56799999999999999999987 99999999998874 4579999999988 6667899999998888765
Q ss_pred cCcc--cchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh-ccCcEEEE
Q 004164 148 MEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 200 (771)
Q Consensus 148 ~~~~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~ 200 (771)
.+.. .+......++.++.+.| |||+++++...... ...+...+ ..+|....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~-~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 92 TDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR-PKEVLARLEERGYGTRI 145 (170)
T ss_dssp CCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC-HHHHHHHHHHTTCEEEE
T ss_pred CccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC-HHHHHHHHHHCCCcEEE
Confidence 4430 00000236788888888 99999998755322 12232333 33666543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=135.71 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=94.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.+++.....+.+++++++|+.+...++++||+|+++..+++.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~ 311 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVG 311 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence 678999999999999999999876 9999999999999998877666667999999999987777899999999888863
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
.... ......++.++.++|+|||+++++....
T Consensus 312 ~~~~--~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 312 GAVI--LDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp CSSC--CHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred cccc--HHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 2211 1236799999999999999999987653
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=120.64 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=92.5
Q ss_pred cchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 004164 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (771)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (771)
..+..+...+..++. +..+|||+|||+|.++..++.. +..+|+++|+|+.|++.+++++...+....+...|..
T Consensus 34 p~ld~fY~~~~~~l~-----~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~ 108 (200)
T 3fzg_A 34 ATLNDFYTYVFGNIK-----HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKE 108 (200)
T ss_dssp GGHHHHHHHHHHHSC-----CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCH
T ss_pred HhHHHHHHHHHhhcC-----CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccc
Confidence 445555566666663 5789999999999999999877 3349999999999999998887766655445556765
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.. .+.++||+|+...++|++.+. +..+..+.+.|+|||.||-..
T Consensus 109 ~~-~~~~~~DvVLa~k~LHlL~~~-------~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 109 SD-VYKGTYDVVFLLKMLPVLKQQ-------DVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HH-HTTSEEEEEEEETCHHHHHHT-------TCCHHHHHHTCEEEEEEEEEE
T ss_pred cc-CCCCCcChhhHhhHHHhhhhh-------HHHHHHHHHHhCCCCEEEEeC
Confidence 54 456889999999999999332 355679999999999998876
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=124.32 Aligned_cols=113 Identities=11% Similarity=0.105 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCCccEEEeccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGG 143 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDlVi~~~~ 143 (771)
++.+|||||||+|.++..|++. +..+|+|+|+|+.+++.++++....+ .++.++++|+.+++ +++++||.|+....
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 5789999999999999999987 33599999999999999887765544 57999999999875 77889999986543
Q ss_pred cccccCcccc-hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELG-HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~-~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
..+....... ......+++++.++|+|||.+++.+..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3221110000 000258899999999999999998854
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.2e-13 Score=136.40 Aligned_cols=142 Identities=10% Similarity=0.108 Sum_probs=102.9
Q ss_pred CCCHhhHHHHHhhcCC-CCcc-----ccccch-hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEE
Q 004164 25 FTSKENWDKFFTIRGI-GDSF-----EWYAEW-PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNV 97 (771)
Q Consensus 25 f~~~~yWd~~y~~~~~-~~~~-----ew~~~~-~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~v 97 (771)
.....||++.+..... ...+ .|+... ..+...+...+.. ..++.+|||+|||+|.++..+++.+ .+|+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~vLD~gcG~G~~~~~la~~~-~~v~~v 106 (241)
T 3gdh_A 30 PELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQ--SFKCDVVVDAFCGVGGNTIQFALTG-MRVIAI 106 (241)
T ss_dssp GGGHHHHHTHHHHCTTGGGTCCCCHHHHHHCCCHHHHHHHHHHHHH--HSCCSEEEETTCTTSHHHHHHHHTT-CEEEEE
T ss_pred HHHHHHHHhhhhhHhhccCCceecccceeecCHHHHHHHHHHHhhh--ccCCCEEEECccccCHHHHHHHHcC-CEEEEE
Confidence 3457799987765420 0011 232221 2223444444321 0267899999999999999999988 499999
Q ss_pred cCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 98 DFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 98 DiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
|+|+.+++.+++++...+ ++++++++|+.+++ ++++||+|++...+++..... ..+.+++++|+|||+++
T Consensus 107 D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~-------~~~~~~~~~L~pgG~~i 178 (241)
T 3gdh_A 107 DIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGGPDYAT-------AETFDIRTMMSPDGFEI 178 (241)
T ss_dssp ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSSGGGGG-------SSSBCTTTSCSSCHHHH
T ss_pred ECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCCcchhh-------hHHHHHHhhcCCcceeH
Confidence 999999999987776555 47999999999876 568999999998888865443 35778999999999966
Q ss_pred EE
Q 004164 176 CL 177 (771)
Q Consensus 176 i~ 177 (771)
+.
T Consensus 179 ~~ 180 (241)
T 3gdh_A 179 FR 180 (241)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-11 Score=127.08 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCc---chhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----------CCC
Q 004164 68 PPPQILVPGCGN---SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------FMD 132 (771)
Q Consensus 68 ~~~~ILDiGCG~---G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----------~~~ 132 (771)
+..+|||||||+ |.++..+.+. ...+|+++|+|+.|++.+++++. ..++++|+++|+.+.+ ++.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~-~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA-KDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT-TCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC-CCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 457999999999 9888766664 23599999999999998887763 3468999999997631 333
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
.+||+|++.+++|++.+.+ ...+|++++++|+|||+|++.++..
T Consensus 156 ~~~d~v~~~~vlh~~~d~~-----~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDV-----VDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TSCCEEEETTTGGGSCTTT-----HHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCEEEEEechhhhCCcHH-----HHHHHHHHHHhCCCCcEEEEEEecC
Confidence 5899999999999998754 5699999999999999999998764
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=126.19 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCC---CCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFM---DETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~---~~sFDlVi~~~ 142 (771)
++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.+++.....+ .+++++++|+.++++. +++||+|++..
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 5789999999999999999864 33589999999999998877654433 4699999999887754 57999999865
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
. .+ ...+++++.++|+|||++++..-
T Consensus 150 ~----~~-------~~~~l~~~~~~LkpgG~l~~~~g 175 (240)
T 1xdz_A 150 V----AR-------LSVLSELCLPLVKKNGLFVALKA 175 (240)
T ss_dssp C----SC-------HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred c----CC-------HHHHHHHHHHhcCCCCEEEEEeC
Confidence 2 22 46999999999999999998753
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=121.36 Aligned_cols=122 Identities=13% Similarity=0.135 Sum_probs=92.0
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l- 128 (771)
.+...+...+.. ..++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+ .++.++++|+.+.
T Consensus 17 ~~~~~~~~~l~~--~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 94 (177)
T 2esr_A 17 KVRGAIFNMIGP--YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI 94 (177)
T ss_dssp -CHHHHHHHHCS--CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH
T ss_pred HHHHHHHHHHHh--hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH
Confidence 344556666642 14678999999999999999998876799999999999998887765544 3689999999873
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHH--HccccCeEEEEEEcCcch
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~--rvLkpGG~~ii~~~~~~~ 183 (771)
+..+++||+|++...++.. .....+..+. ++|+|||++++.......
T Consensus 95 ~~~~~~fD~i~~~~~~~~~--------~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 143 (177)
T 2esr_A 95 DCLTGRFDLVFLDPPYAKE--------TIVATIEALAAKNLLSEQVMVVCETDKTVL 143 (177)
T ss_dssp HHBCSCEEEEEECCSSHHH--------HHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred HhhcCCCCEEEECCCCCcc--------hHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence 4445679999987654321 1346677776 999999999998766433
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.4e-12 Score=127.23 Aligned_cols=116 Identities=15% Similarity=0.065 Sum_probs=88.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC-C--CCCCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-Q--FMDETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l-~--~~~~sFDlVi~~~ 142 (771)
++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....+ .++.++++|+.++ + +++++||.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 57899999999999999999874 3589999999999999987765544 5799999999884 3 7789999999764
Q ss_pred ccccccCcccc-hHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 143 GLDALMEPELG-HKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 143 ~l~~l~~~~~~-~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
...+....... ......+++++.++|||||+|++.+.....
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~ 155 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPY 155 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHH
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence 43332111100 000125899999999999999999866433
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=125.19 Aligned_cols=138 Identities=13% Similarity=0.020 Sum_probs=101.3
Q ss_pred CCCHhhHHHHHhhcCCCCcccccc--chhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-C-CeEEEEcCC
Q 004164 25 FTSKENWDKFFTIRGIGDSFEWYA--EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-F-HGITNVDFS 100 (771)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~ew~~--~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~-~~V~~vDiS 100 (771)
|....+|+..|... ...+.+.. ..+.+...+...+.. .++.+|||+|||+|.++..+++.+ . .+|+++|+|
T Consensus 37 ~~~~~~~~~~y~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~ 111 (215)
T 2yxe_A 37 FLPEHLKEYAYVDT--PLEIGYGQTISAIHMVGMMCELLDL---KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERI 111 (215)
T ss_dssp GSCGGGGGGTTSCS--CEEEETTEEECCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESC
T ss_pred cCCchhhhhcccCC--CccCCCCcEeCcHHHHHHHHHhhCC---CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC
Confidence 55566777766543 11221111 224455556666654 578899999999999999999874 2 599999999
Q ss_pred HHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 101 KVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 101 ~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+.+++.++++....+ .++.+.++|+......+++||+|++..+++++. .++.++|+|||++++...
T Consensus 112 ~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-------------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 112 PELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP-------------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBBSSCC-------------HHHHHTEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCchHHHH-------------HHHHHHcCCCcEEEEEEC
Confidence 999998887764433 569999999865332367899999999998763 478999999999999875
Q ss_pred C
Q 004164 180 A 180 (771)
Q Consensus 180 ~ 180 (771)
.
T Consensus 179 ~ 179 (215)
T 2yxe_A 179 R 179 (215)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=135.37 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=89.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||||||+|.++..+++.|..+|+|+|+| .+++.++++....+ .+++++++|+.+++++ ++||+|++..+.
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMG 139 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCB
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChh
Confidence 5788999999999999999999988899999999 89998877765544 4599999999998877 899999997766
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+.+.... ....++.++.++|||||++++..
T Consensus 140 ~~l~~e~----~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 140 YFLLRES----MFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TTBTTTC----THHHHHHHHHHHEEEEEEEESSE
T ss_pred hcccchH----HHHHHHHHHHhhCCCCeEEEEec
Confidence 6654322 15689999999999999998654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=130.92 Aligned_cols=104 Identities=17% Similarity=0.151 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|.++..+++.|..+|+++|+| .+++.++++....+ .+++++.+|+.++++++++||+|++....+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 578999999999999999999887799999999 58888877765443 469999999999988888999999986656
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii 176 (771)
.+.... ....++.++.++|+|||+++.
T Consensus 117 ~l~~~~----~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYES----MMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTC----CHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHH----HHHHHHHHHHhhcCCCeEEEE
Confidence 554322 156889999999999999873
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.8e-11 Score=121.63 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=94.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMT 126 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~ 126 (771)
+.....+...+.. .++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.+++..... .+++.+.++|+.
T Consensus 82 ~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~ 158 (258)
T 2pwy_A 82 PKDASAMVTLLDL---APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLE 158 (258)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGG
T ss_pred chHHHHHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchh
Confidence 3333445555543 57889999999999999999987 4 459999999999999888776443 367999999999
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
+.++++++||+|++. ..++. .++.++.++|+|||++++.+...+.
T Consensus 159 ~~~~~~~~~D~v~~~-----~~~~~-------~~l~~~~~~L~~gG~l~~~~~~~~~ 203 (258)
T 2pwy_A 159 EAELEEAAYDGVALD-----LMEPW-------KVLEKAALALKPDRFLVAYLPNITQ 203 (258)
T ss_dssp GCCCCTTCEEEEEEE-----SSCGG-------GGHHHHHHHEEEEEEEEEEESCHHH
T ss_pred hcCCCCCCcCEEEEC-----CcCHH-------HHHHHHHHhCCCCCEEEEEeCCHHH
Confidence 887888899999972 23322 7899999999999999999876433
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=133.52 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=92.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (771)
+...+.+.+.. .++.+|||||||+|.++..+++.|..+|+++|+|+ +++.++++....+ ++++++.+|+.++++
T Consensus 38 y~~~i~~~l~~---~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 113 (348)
T 2y1w_A 38 YQRAILQNHTD---FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL 113 (348)
T ss_dssp HHHHHHHTGGG---TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred HHHHHHhcccc---CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC
Confidence 33445555443 47789999999999999999998877999999997 7777776665444 579999999999876
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
+ ++||+|++...++++.... ....+.+++++|||||++++.
T Consensus 114 ~-~~~D~Ivs~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 114 P-EQVDIIISEPMGYMLFNER-----MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp S-SCEEEEEECCCBTTBTTTS-----HHHHHHHGGGGEEEEEEEESC
T ss_pred C-CceeEEEEeCchhcCChHH-----HHHHHHHHHhhcCCCeEEEEe
Confidence 5 6899999998888776544 557788999999999999854
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-11 Score=121.38 Aligned_cols=129 Identities=22% Similarity=0.362 Sum_probs=95.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..++ .+|+++|+|+. ++.+.++|+.++++++++||+|++..++++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~--------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 127 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL--------------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG 127 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS--------------STTEEESCTTSCSCCTTCEEEEEEESCCCS
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC--------------CceEEEeccccCCCCCCCEeEEEEehhccc
Confidence 367899999999999998773 48999999995 578899999999988899999999999974
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch-hhcchhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH-VLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKEN 224 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~-~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~ 224 (771)
.+ ...++.++.++|+|||++++.++.... ....+...+ ..+|.+...... .-..+.++++|..
T Consensus 128 -~~-------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-------~~~~~~~~~~k~~ 192 (215)
T 2zfu_A 128 -TN-------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLT-------NSHFFLFDFQKTG 192 (215)
T ss_dssp -SC-------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECC-------STTCEEEEEEECS
T ss_pred -cC-------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecC-------CCeEEEEEEEecC
Confidence 32 469999999999999999999876432 122233333 346665443321 1234777777765
Q ss_pred Cccc
Q 004164 225 SSVV 228 (771)
Q Consensus 225 ~~~~ 228 (771)
....
T Consensus 193 ~~~~ 196 (215)
T 2zfu_A 193 PPLV 196 (215)
T ss_dssp SCSS
T ss_pred cccc
Confidence 5443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=130.21 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=103.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
..+.+||+||+|+|.++..+....+..+|++||+||.+++.|++.+ |+ ++++++.+|+.++ .
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl---~~v~~v~gDa~~l----~-------- 185 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV---DGVNVITGDETVI----D-------- 185 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC---CSEEEEESCGGGG----G--------
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC---CCeEEEECchhhC----C--------
Confidence 5678999999998866655445556789999999999999999986 65 6899999999875 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
+..||+|+++.... --..+++.+.+.|+|||.|+++........
T Consensus 186 -----------------------d~~FDvV~~~a~~~-------------d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~ 229 (298)
T 3fpf_A 186 -----------------------GLEFDVLMVAALAE-------------PKRRVFRNIHRYVDTETRIIYRTYTGMRAI 229 (298)
T ss_dssp -----------------------GCCCSEEEECTTCS-------------CHHHHHHHHHHHCCTTCEEEEEECCGGGGG
T ss_pred -----------------------CCCcCEEEECCCcc-------------CHHHHHHHHHHHcCCCcEEEEEcCcchhhh
Confidence 15699999854321 126899999999999999999875432221
Q ss_pred -HHHHHHHHHHhccceEEeee-cCCccEEEEEecCCCcCCCCCHHHHHHHHhhhhcCC
Q 004164 697 -KDMVISRMKMVFNHLFCLQL-EEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQ 752 (771)
Q Consensus 697 -~~~v~~~l~~vF~~v~~~~~-~~~~N~Vl~a~~~~~~~~~~~l~~~a~~l~~~~~~~ 752 (771)
...+.....+.|..+..... ++-.|.|+||++...+.-.+.+-+-.++=+.+++|+
T Consensus 230 l~~~v~~~~~~gf~~~~~~~p~~~v~N~vv~a~k~~~~~~~~~~~~~~~~~~~~~~~~ 287 (298)
T 3fpf_A 230 LYAPVSDDDITGFRRAGVVLPSGKVNNTSVLVFKCPDKGELNSKLEGKPIPNPLLGLD 287 (298)
T ss_dssp SSCCCCTGGGTTEEEEEEECCCTTCCCEEEEEEECC----------------------
T ss_pred ccccCChhhhhhhhheeEECCCCCcCcEEEEEEccCCchHHHHHHhcccCCcceeccc
Confidence 11112334457776665544 344799999988875433333444444444455544
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=134.40 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=90.1
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhh-------c---CCCCcEEEEee
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-------R---DRSDMRWRVMD 124 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~-------~---~~~~i~~~~~D 124 (771)
.+...+.. .++.+|||||||+|.++..++.. +..+++|||+|+.+++.+++... . ...+++|+++|
T Consensus 164 ~il~~l~l---~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 164 QMIDEIKM---TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHCC---CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34444443 68899999999999999999865 66579999999999987765321 1 12579999999
Q ss_pred cCCCCCCC--CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 125 MTSMQFMD--ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 125 ~~~l~~~~--~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+.++++.+ ..||+|+++.+++. ++ ....|.+++++|||||+|++.+...+
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F~---pd-----l~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAFG---PE-----VDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTCC---HH-----HHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred ccCCccccccCCccEEEEcccccC---ch-----HHHHHHHHHHcCCCCcEEEEeecccC
Confidence 99988754 47999999876532 22 56888999999999999999876533
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.7e-12 Score=122.16 Aligned_cols=125 Identities=15% Similarity=0.149 Sum_probs=94.1
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecC
Q 004164 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (771)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~ 126 (771)
....+...+..++.. ..++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++.....+ ++++++++|+.
T Consensus 27 ~~~~~~~~~~~~l~~--~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 104 (187)
T 2fhp_A 27 TTDKVKESIFNMIGP--YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN 104 (187)
T ss_dssp CCHHHHHHHHHHHCS--CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred CHHHHHHHHHHHHHh--hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHH
Confidence 344556666666642 13678999999999999999988876799999999999998877665443 46999999998
Q ss_pred CCC----CCCCCccEEEeccccccccCcccchHHHHHHHHHH--HHccccCeEEEEEEcCcch
Q 004164 127 SMQ----FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV--KRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 127 ~l~----~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i--~rvLkpGG~~ii~~~~~~~ 183 (771)
+.. +++++||+|++...++. .. ....+..+ .++|+|||++++.......
T Consensus 105 ~~~~~~~~~~~~fD~i~~~~~~~~-~~-------~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 105 RALEQFYEEKLQFDLVLLDPPYAK-QE-------IVSQLEKMLERQLLTNEAVIVCETDKTVK 159 (187)
T ss_dssp HHHHHHHHTTCCEEEEEECCCGGG-CC-------HHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred HHHHHHHhcCCCCCEEEECCCCCc-hh-------HHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence 742 23678999998876442 22 33666666 8999999999988765433
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=120.45 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=91.6
Q ss_pred HHHHhhCCCCCC-CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--C
Q 004164 56 PLISLIGAPTSS-PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--F 130 (771)
Q Consensus 56 ~l~~~l~~~~~~-~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~ 130 (771)
.+..++.. . ++.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++.....+ .+++++++|+.+++ +
T Consensus 39 ll~~~~~~---~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~ 115 (259)
T 3lpm_A 39 LLAKFSYL---PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI 115 (259)
T ss_dssp HHHHHCCC---CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS
T ss_pred HHHHHhcC---CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh
Confidence 34455543 5 688999999999999999999866699999999999998877765444 36999999999875 5
Q ss_pred CCCCccEEEeccccccc-----cCccc--------chHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 131 MDETFDVILDKGGLDAL-----MEPEL--------GHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l-----~~~~~--------~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++++||+|+++..+... ..+.. .......++..+.++|+|||+++++...
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 57899999997655433 11100 0012568999999999999999997643
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-12 Score=142.92 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=88.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~ 132 (771)
+...+...+. ..++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.++++.. ......+...+...+++++
T Consensus 95 ~~~~l~~~~~---~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 95 LARDFLATEL---TGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGI-RVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHHTTT---CSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTC-CEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhC---CCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCC-CcceeeechhhHhhcccCC
Confidence 3334444443 25788999999999999999999888 99999999999987765411 0011123344555566778
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++||+|++.++++|+.+ ...++++++++|||||++++....
T Consensus 170 ~~fD~I~~~~vl~h~~d-------~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPY-------VQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp CCEEEEEEESCGGGCTT-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCEEEEEECChHHhcCC-------HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999999975 459999999999999999987644
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.1e-11 Score=117.70 Aligned_cols=106 Identities=13% Similarity=0.170 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------------
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------- 129 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------------- 129 (771)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+ ..++++++++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CCCCceEEEccccchhhhhhcccccccccc
Confidence 46789999999999999999986 3 3589999999921 2357999999998876
Q ss_pred -----------CCCCCccEEEeccccccccCcccc----hHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 130 -----------FMDETFDVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 130 -----------~~~~sFDlVi~~~~l~~l~~~~~~----~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+++++||+|++.+++++....... ......++.++.++|+|||.|++..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 158 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS 158 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence 567899999998877764211100 01134589999999999999999776543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.4e-11 Score=129.15 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=90.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
+..+|||+|||+|.++..+++. +..+++++|++ .+++.++++....+ .++++..+|+.+.+++++ ||+|++..++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l 242 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFL 242 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchh
Confidence 5789999999999999999887 23499999999 99998887764433 369999999998777654 9999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++.+++ ...++++++++|+|||++++.+...
T Consensus 243 ~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 243 HHFDVAT-----CEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp GGSCHHH-----HHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred ccCCHHH-----HHHHHHHHHHhCCCCcEEEEEeecC
Confidence 9985443 6799999999999999999998653
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=115.87 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (771)
.++.+|||+|||+|.++..+++. |. .+++++|+++ +++ .+++.+.++|+.+.+ +++++||
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~---------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP---------IVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC---------CTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc---------cCcEEEEEcccccchhhhhhhccCCCCcee
Confidence 46789999999999999999887 43 6999999999 653 157899999999876 7778999
Q ss_pred EEEeccccccccCcccch----HHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 137 VILDKGGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~----~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
+|++..++++........ .....++.++.++|+|||.+++..+..+.
T Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (180)
T 1ej0_A 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred EEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence 999998888765432100 01268999999999999999998876443
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=122.92 Aligned_cols=120 Identities=10% Similarity=0.076 Sum_probs=91.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC-C
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS-M 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~-l 128 (771)
..+...+..++... .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+ .+++++++|+.+ +
T Consensus 39 ~~~~~~l~~~l~~~--~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~ 116 (202)
T 2fpo_A 39 DRVRETLFNWLAPV--IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL 116 (202)
T ss_dssp HHHHHHHHHHHHHH--HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHhh--cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH
Confidence 34444455554320 1568999999999999999888877799999999999998887765544 589999999987 4
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHH--ccccCeEEEEEEcC
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLA 180 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~r--vLkpGG~~ii~~~~ 180 (771)
+..+++||+|++...++ ... ...+++.+.+ +|+|||++++....
T Consensus 117 ~~~~~~fD~V~~~~p~~-~~~-------~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 117 AQKGTPHNIVFVDPPFR-RGL-------LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SSCCCCEEEEEECCSSS-TTT-------HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred hhcCCCCCEEEECCCCC-CCc-------HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 55667999999876643 211 4467777765 59999999988755
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=124.93 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=101.5
Q ss_pred cCCCCHhhHHHHHhhcCCCCcccc--ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCC
Q 004164 23 GDFTSKENWDKFFTIRGIGDSFEW--YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFS 100 (771)
Q Consensus 23 ~~f~~~~yWd~~y~~~~~~~~~ew--~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS 100 (771)
..|....+|+..|... ...+.. ....+.+...+.+.+.. .++.+|||+|||+|.++..+++.+..+|+++|++
T Consensus 49 ~~f~~~~~~~~~y~~~--~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~ 123 (235)
T 1jg1_A 49 YLSVEDKYKKYAHIDE--PLPIPAGQTVSAPHMVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVKTDVYTIERI 123 (235)
T ss_dssp GGGSCGGGGGGTTSSS--CEECSTTCEECCHHHHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESC
T ss_pred hhhCCchhhhcCccCC--CcccCCCceeccHHHHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCC
Confidence 3455666777766543 122211 12234555666666654 5788999999999999999998742599999999
Q ss_pred HHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCC-CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 101 KVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDE-TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 101 ~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~-sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+.+++.++++....+ .++.+..+|+ ..++++. .||+|++..+++++. .++.++|+|||++++..
T Consensus 124 ~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~~~-------------~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 124 PELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAGAPKIP-------------EPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSBBSSCC-------------HHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCcHHHHH-------------HHHHHhcCCCcEEEEEE
Confidence 999998887765443 4699999998 3344444 599999988887653 36889999999999987
Q ss_pred cC
Q 004164 179 LA 180 (771)
Q Consensus 179 ~~ 180 (771)
..
T Consensus 190 ~~ 191 (235)
T 1jg1_A 190 GS 191 (235)
T ss_dssp CS
T ss_pred ec
Confidence 54
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-11 Score=121.11 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=91.1
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~ 123 (771)
|......+...+...+......++.+|||+|||+|.++..+++. + .++|+++|+|+.+++.+.+.+.. ..++.++++
T Consensus 54 w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-r~nv~~i~~ 132 (232)
T 3id6_C 54 WNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-RPNIFPLLA 132 (232)
T ss_dssp CCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-CTTEEEEEC
T ss_pred hchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCeEEEEc
Confidence 44444455666766666445578999999999999999999886 3 46999999999998766555433 468999999
Q ss_pred ecCCCC---CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 124 DMTSMQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 124 D~~~l~---~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|+.... ...++||+|++..+. ++ ....+...+.++|||||+|++...
T Consensus 133 Da~~~~~~~~~~~~~D~I~~d~a~-----~~----~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 133 DARFPQSYKSVVENVDVLYVDIAQ-----PD----QTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp CTTCGGGTTTTCCCEEEEEECCCC-----TT----HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccchhhhccccceEEEEecCCC-----hh----HHHHHHHHHHHhCCCCeEEEEEEc
Confidence 998643 124689999987543 12 123445667779999999998743
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-11 Score=124.57 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=101.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCC---CCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFM---DETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~---~~sFDlVi~~ 141 (771)
.++.+|||||||+|..+..|+.. +..+|+++|+|+.+++.+++.....+ .+++++++|+.+++.. +++||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 46789999999999999999886 44699999999999998877665444 4699999999887643 4799999986
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc-hhhcchhhhh-ccCcEEE-EeecCCCCCCCCCCccEEE
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES-HVLGLLFPKF-RFGWKMS-VHAIPQKSSSEPSLQTFMV 218 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~-~~~~~l~~~~-~~~w~~~-~~~i~~~~~~~~~l~~f~~ 218 (771)
.+ .+ ...+++.+.++|||||+|++..-... .-...+.... ..+|... +..+... ...-..+.+
T Consensus 159 a~----~~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p---~~~~~R~l~ 224 (249)
T 3g89_A 159 AV----AP-------LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLP---LSGEARHLV 224 (249)
T ss_dssp SS----CC-------HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECT---TTCCEEEEE
T ss_pred Cc----CC-------HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCC---CCCCcEEEE
Confidence 43 22 45899999999999999998774311 1111122221 2255443 3333211 112345777
Q ss_pred EEEEcCCcc
Q 004164 219 VADKENSSV 227 (771)
Q Consensus 219 v~~k~~~~~ 227 (771)
+++|.+.++
T Consensus 225 ~~~k~~~t~ 233 (249)
T 3g89_A 225 VLEKTAPTP 233 (249)
T ss_dssp EEEECSCCC
T ss_pred EEEeCCCCC
Confidence 777765544
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-10 Score=126.32 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=112.8
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (771)
.+...+..+... .++.+|||+|||+|.++..++..+ ..+|+|+|+++.+++.+++.+...+ .++++.++|+.++
T Consensus 190 ~la~~l~~~~~~---~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~ 266 (354)
T 3tma_A 190 VLAQALLRLADA---RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL 266 (354)
T ss_dssp HHHHHHHHHTTC---CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG
T ss_pred HHHHHHHHHhCC---CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC
Confidence 344555555554 577899999999999999999864 3589999999999998877765544 3799999999999
Q ss_pred CCCCCCccEEEeccccccccCcc-cchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCCCC
Q 004164 129 QFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKS 207 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~-~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~ 207 (771)
+.+.+.||+|+++.......... ........+++++.++|+|||++++++.....+ +.+.. .+|........ .
T Consensus 267 ~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~-~~~~~---~g~~~~~~~~l--~ 340 (354)
T 3tma_A 267 PRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALL-KRALP---PGFALRHARVV--E 340 (354)
T ss_dssp GGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHH-HHHCC---TTEEEEEEEEC--C
T ss_pred ccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHhh---cCcEEEEEEEE--E
Confidence 87778899999976655433211 112235789999999999999999998764332 22222 45555432221 1
Q ss_pred CCCCCCccEEEEEEE
Q 004164 208 SSEPSLQTFMVVADK 222 (771)
Q Consensus 208 ~~~~~l~~f~~v~~k 222 (771)
...+..++++++|
T Consensus 341 --~g~l~~~i~vl~r 353 (354)
T 3tma_A 341 --QGGVYPRVFVLEK 353 (354)
T ss_dssp --BTTBCCEEEEEEE
T ss_pred --eCCEEEEEEEEEc
Confidence 2246677888766
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-11 Score=131.17 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=90.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC--CCCCCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM--QFMDETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l--~~~~~sFDlVi~~~ 142 (771)
...+|||||||+|.++..+++. +..+++++|+ +.+++.++++....+ ++++++.+|+.+. |++ ++||+|++..
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 5689999999999999999886 2348999999 999998887765444 4799999999986 466 7899999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++|++.+++ ..+++++++++|+|||++++.+..
T Consensus 257 vlh~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 257 FLDCFSEEE-----VISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp CSTTSCHHH-----HHHHHHHHHHHCCTTCEEEEEECC
T ss_pred hhhhCCHHH-----HHHHHHHHHHhcCCCcEEEEEeec
Confidence 999887554 678999999999999999998864
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=119.11 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=89.9
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-C
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-Q 129 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l-~ 129 (771)
..+...+..++... ..++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+.+++++++|+.+. +
T Consensus 25 ~~~~~~~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 102 (171)
T 1ws6_A 25 VRLRKALFDYLRLR-YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLP 102 (171)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHhh-ccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHH
Confidence 34444455555310 01578999999999999999999887 599999999999988776654434899999998873 2
Q ss_pred -CC--CCCccEEEeccccccccCcccchHHHHHHHHHHH--HccccCeEEEEEEcCcch
Q 004164 130 -FM--DETFDVILDKGGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 130 -~~--~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~--rvLkpGG~~ii~~~~~~~ 183 (771)
++ .++||+|++...++ .... .+++.+. ++|+|||++++.......
T Consensus 103 ~~~~~~~~~D~i~~~~~~~--~~~~-------~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 103 EAKAQGERFTVAFMAPPYA--MDLA-------ALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp HHHHTTCCEEEEEECCCTT--SCTT-------HHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred hhhccCCceEEEEECCCCc--hhHH-------HHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 21 24899999987765 2222 5566666 999999999998866443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.21 E-value=9.9e-11 Score=119.25 Aligned_cols=123 Identities=18% Similarity=0.262 Sum_probs=91.9
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~ 123 (771)
|......+...+...+......++.+|||+|||+|.++..+++. | .++|+++|+|+.+++.+.+.+... ++++++++
T Consensus 51 ~~p~~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~ 129 (227)
T 1g8a_A 51 WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILG 129 (227)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEEC
T ss_pred eCCCchhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEc
Confidence 55555555555544454333467889999999999999999987 4 369999999999999887766443 78999999
Q ss_pred ecCCCC---CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 124 DMTSMQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 124 D~~~l~---~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
|+.+.. ...++||+|++... .+. ....++.++.++|||||++++..
T Consensus 130 d~~~~~~~~~~~~~~D~v~~~~~-----~~~----~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 130 DATKPEEYRALVPKVDVIFEDVA-----QPT----QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCC-----STT----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCcchhhcccCCceEEEECCC-----CHh----HHHHHHHHHHHhcCCCCEEEEEE
Confidence 998742 12368999996543 111 13455999999999999999873
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.5e-11 Score=129.97 Aligned_cols=123 Identities=14% Similarity=0.157 Sum_probs=94.0
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM 128 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~----~~i~~~~~D~~~l 128 (771)
...+.+.+.. .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+++.....+ .+++|...|+.+
T Consensus 211 ~~~ll~~l~~---~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~- 286 (375)
T 4dcm_A 211 ARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS- 286 (375)
T ss_dssp HHHHHHTCCC---SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-
T ss_pred HHHHHHhCcc---cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-
Confidence 4456666654 456899999999999999999984 4599999999999998877665433 258889999988
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
++++++||+|+++..+++..... ......+++++.++|+|||+++++.....
T Consensus 287 ~~~~~~fD~Ii~nppfh~~~~~~--~~~~~~~l~~~~~~LkpgG~l~iv~n~~~ 338 (375)
T 4dcm_A 287 GVEPFRFNAVLCNPPFHQQHALT--DNVAWEMFHHARRCLKINGELYIVANRHL 338 (375)
T ss_dssp TCCTTCEEEEEECCCC---------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred cCCCCCeeEEEECCCcccCcccC--HHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence 56778999999998887532211 11255889999999999999999876533
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-11 Score=121.71 Aligned_cols=104 Identities=10% Similarity=0.111 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhh-----cCCCCcEEEEeecCCCCCCCCCccEEEe
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQFMDETFDVILD 140 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~-----~~~~~i~~~~~D~~~l~~~~~sFDlVi~ 140 (771)
.++.+|||+|||+|.++..|++.. ..+|+|+|+|+.|++.+.+.+. ...++++++++|+.++++++++ |.|+.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 478899999999999999999983 3599999999998886543332 1225899999999999987776 77763
Q ss_pred cc---cc--ccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 141 KG---GL--DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~---~l--~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.. .+ +++.++. .++++++++|||||++++..
T Consensus 105 ~~~~~~~~~~~~~~~~-------~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSP-------EMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp ESCCHHHHHHHHTSSS-------HHHHHHHHTEEEEEEEEEEE
T ss_pred EccchhhhhhhhccHH-------HHHHHHHHHcCCCcEEEEEe
Confidence 22 12 1444433 89999999999999999854
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-11 Score=127.66 Aligned_cols=107 Identities=15% Similarity=0.045 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++....+ ++++|..+|+. .+++. +||+|++..+
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 45689999999999999999886 3358999999 999998887765543 67999999997 45554 8999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+|++.+++ ..+++++++++|+|||++++.+...
T Consensus 245 lh~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 245 LHDWDDLS-----AVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp GGGSCHHH-----HHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred hccCCHHH-----HHHHHHHHHHhcCCCCEEEEEeecC
Confidence 99987654 6799999999999999999998653
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.17 E-value=9.4e-11 Score=123.47 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcC-C-CCcEEEEeecCCCCCCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD-R-SDMRWRVMDMTSMQFMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~-~-~~i~~~~~D~~~l~~~~~sFDlVi~~~ 142 (771)
.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++..... + +++++.++|+.+ ++++++||+|++
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~-- 185 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA-- 185 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE--
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE--
Confidence 67889999999999999999987 2359999999999999888776554 3 579999999988 667789999997
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++++. .+++++.++|+|||++++.+...
T Consensus 186 ---~~~~~~-------~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 186 ---DIPDPW-------NHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp ---CCSCGG-------GSHHHHHHTEEEEEEEEEEESSH
T ss_pred ---cCcCHH-------HHHHHHHHHcCCCCEEEEEeCCH
Confidence 233333 78999999999999999998764
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-10 Score=113.88 Aligned_cols=101 Identities=13% Similarity=0.050 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|.++..++.. +..+++++|+|+.+++.+++.....+ .++++.++|+.+.+ +.++||+|++...
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 4689999999999999999986 34599999999999998877765444 45999999999876 4578999997542
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.+ ...++.++.++|+|||++++....
T Consensus 142 --~~-------~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 142 --AS-------LNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp --SS-------HHHHHHHHTTSEEEEEEEEEEESS
T ss_pred --CC-------HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 11 458999999999999999988643
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=122.90 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=94.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcC----CCCcEEEEee
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMD 124 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~----~~~i~~~~~D 124 (771)
+.....+...+.. .++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.+++..... ..++++.++|
T Consensus 85 ~~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d 161 (280)
T 1i9g_A 85 PKDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD 161 (280)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred HHHHHHHHHHcCC---CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 3334455555543 57889999999999999999985 3 459999999999999887776543 3689999999
Q ss_pred cCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 125 MTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 125 ~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
+.+.++++++||+|++. +.++. .++.++.++|+|||++++.+.....
T Consensus 162 ~~~~~~~~~~~D~v~~~-----~~~~~-------~~l~~~~~~L~pgG~l~~~~~~~~~ 208 (280)
T 1i9g_A 162 LADSELPDGSVDRAVLD-----MLAPW-------EVLDAVSRLLVAGGVLMVYVATVTQ 208 (280)
T ss_dssp GGGCCCCTTCEEEEEEE-----SSCGG-------GGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred hHhcCCCCCceeEEEEC-----CcCHH-------HHHHHHHHhCCCCCEEEEEeCCHHH
Confidence 99988878899999972 23332 7799999999999999998876443
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-11 Score=129.27 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=96.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (771)
....+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.++++....+....+..+|+.+..
T Consensus 184 ~~~~ll~~l~~---~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~-- 258 (343)
T 2pjd_A 184 GSQLLLSTLTP---HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV-- 258 (343)
T ss_dssp HHHHHHHHSCT---TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--
T ss_pred HHHHHHHhcCc---CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--
Confidence 45566677643 3567999999999999999998864 48999999999999998887666666788999987653
Q ss_pred CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++||+|+++..+++.... .......+++++.++|+|||.++++...
T Consensus 259 ~~~fD~Iv~~~~~~~g~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 259 KGRFDMIISNPPFHDGMQT--SLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CSCEEEEEECCCCCSSSHH--HHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred cCCeeEEEECCCcccCccC--CHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 6799999999888753210 1123679999999999999999998765
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.17 E-value=8e-11 Score=120.83 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=89.0
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (771)
.....+..++.. .++.+|||+|||+|..+..|+... ..+|+++|+++.+++.+++.....+ ++++++++|+.+.
T Consensus 58 ~~~~~l~~~~~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (232)
T 3ntv_A 58 LTLDLIKQLIRM---NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ 134 (232)
T ss_dssp HHHHHHHHHHHH---HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred HHHHHHHHHHhh---cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 444455555543 367899999999999999999853 4599999999999999988776554 4799999999875
Q ss_pred -C-CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 129 -Q-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 129 -~-~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+ ..+++||+|++...... ...+++++.++|+|||++++..
T Consensus 135 ~~~~~~~~fD~V~~~~~~~~----------~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 135 FENVNDKVYDMIFIDAAKAQ----------SKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp HHHHTTSCEEEEEEETTSSS----------HHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHhhccCCccEEEEcCcHHH----------HHHHHHHHHHhcCCCeEEEEee
Confidence 3 33689999996543221 5689999999999999998844
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-11 Score=123.03 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=86.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..+++.|. +|+++|+++.+++.++++....+..+++.++|+.+. +++++||+|+++...+.
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAEL 196 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHHH
Confidence 3678999999999999999999888 999999999999988877655443489999998763 45678999998755443
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
...++.++.++|+|||++++.....
T Consensus 197 ----------~~~~l~~~~~~LkpgG~lils~~~~ 221 (254)
T 2nxc_A 197 ----------HAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp ----------HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred ----------HHHHHHHHHHHcCCCCEEEEEeecc
Confidence 4589999999999999999987653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=126.14 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.+..+|||||||+|.++..+++.. ..+++++|+ +.+++.++++....+ .+++++.+|+.+.++++ +|+|++..+
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~v~~~~v 265 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI 265 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC--CSEEEEESC
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC--CCEEEEech
Confidence 567899999999999999999873 348999999 999998887765443 35999999999887664 399999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++++.+.. ..+++++++++|+|||++++.+...
T Consensus 266 lh~~~d~~-----~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 266 LYSANEQL-----STIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp GGGSCHHH-----HHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred hccCCHHH-----HHHHHHHHHHhcCCCCEEEEEeccc
Confidence 99886533 6799999999999999999988653
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-10 Score=112.55 Aligned_cols=121 Identities=11% Similarity=0.090 Sum_probs=90.3
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (771)
|.....+...+...+......++.+|||+|||+|.++..++..|..+|+++|+|+.+++.++++....+.+++++++|+.
T Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 107 (207)
T 1wy7_A 28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVS 107 (207)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGG
T ss_pred ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchH
Confidence 44444555555544432122467899999999999999999987768999999999999887776544447999999999
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
+++ ++||+|+++..++...... ...+++++.++| ||.+++.
T Consensus 108 ~~~---~~~D~v~~~~p~~~~~~~~-----~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 108 EFN---SRVDIVIMNPPFGSQRKHA-----DRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp GCC---CCCSEEEECCCCSSSSTTT-----THHHHHHHHHHC--SEEEEEE
T ss_pred HcC---CCCCEEEEcCCCccccCCc-----hHHHHHHHHHhc--CcEEEEE
Confidence 864 4899999988877654322 347888999988 5555443
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=125.87 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++....+ ++++|..+|+. .+++. .||+|++..+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 277 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHV 277 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESC
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhh
Confidence 467899999999999999999873 348999999 999998887765443 57999999998 46665 8999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++++.+++ ..+++++++++|+|||++++.+..
T Consensus 278 lh~~~d~~-----~~~~L~~~~~~L~pgG~l~i~e~~ 309 (369)
T 3gwz_A 278 LHDWDDDD-----VVRILRRIATAMKPDSRLLVIDNL 309 (369)
T ss_dssp GGGSCHHH-----HHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred hccCCHHH-----HHHHHHHHHHHcCCCCEEEEEEec
Confidence 99986544 568999999999999999998865
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-10 Score=117.73 Aligned_cols=121 Identities=16% Similarity=0.153 Sum_probs=88.8
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhc---CC--CCcEEEEeecCCC--
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR---DR--SDMRWRVMDMTSM-- 128 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~---~~--~~i~~~~~D~~~l-- 128 (771)
|..++.. .++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++.... .+ .+++++++|+.+.
T Consensus 28 L~~~~~~---~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 28 LASLVAD---DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHTCCC---CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHH
T ss_pred HHHHhcc---cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhh
Confidence 4455543 467899999999999999999884 35899999999999988776644 33 2589999999987
Q ss_pred -----CCCCCCccEEEeccccccccC---cc--------cchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 129 -----QFMDETFDVILDKGGLDALME---PE--------LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 129 -----~~~~~sFDlVi~~~~l~~l~~---~~--------~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.+++++||+|+++-.+..... ++ ........+++.+.++|+|||+|+++...
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 256789999999844433210 00 00001568999999999999999987654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-11 Score=131.74 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=78.7
Q ss_pred CCCeEEEEcCC------cchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC------CC
Q 004164 68 PPPQILVPGCG------NSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM------DE 133 (771)
Q Consensus 68 ~~~~ILDiGCG------~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~------~~ 133 (771)
+..+||||||| +|..+..+++. +..+|+++|+|+.|. ...++++|+++|+.++++. ++
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcCCCcEEEEecccccchhhhhhcccC
Confidence 56899999999 77777777664 346999999999762 1347899999999998877 78
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+||+|++.++ ++..+ ...+|++++++|||||+|++.++.
T Consensus 288 sFDlVisdgs-H~~~d-------~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 288 PFDIVIDDGS-HINAH-------VRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CEEEEEECSC-CCHHH-------HHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CccEEEECCc-ccchh-------HHHHHHHHHHhcCCCeEEEEEecc
Confidence 9999999764 33321 568999999999999999998865
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-10 Score=113.71 Aligned_cols=145 Identities=12% Similarity=0.192 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC-------C----CCc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM-------D----ETF 135 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~-------~----~sF 135 (771)
.++.+|||+|||+|.++..+++.+ .+|+|+|+++. ...++++++++|+.+.+.. . ++|
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~----------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 92 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEM----------EEIAGVRFIRCDIFKETIFDDIDRALREEGIEKV 92 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCC----------CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSE
T ss_pred CCCCEEEEEeecCCHHHHHHHHcC-CcEEEEecccc----------ccCCCeEEEEccccCHHHHHHHHHHhhcccCCcc
Confidence 478999999999999999999884 49999999983 1236899999999886421 1 489
Q ss_pred cEEEeccccccccCcc----cchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCCCCCCCC
Q 004164 136 DVILDKGGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEP 211 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~----~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~ 211 (771)
|+|++.+......... ......+.++..+.++|||||.|++..+..+.. ..+...+...|. .+...........
T Consensus 93 D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~-~~~~~~l~~~F~-~v~~~kP~asR~~ 170 (191)
T 3dou_A 93 DDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMT-NDFIAIWRKNFS-SYKISKPPASRGS 170 (191)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHH-HHHHHHHGGGEE-EEEEECC------
T ss_pred eEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCH-HHHHHHHHHhcC-EEEEECCCCccCC
Confidence 9999976443221110 011235688999999999999999988765442 233333333332 2222222222233
Q ss_pred CCccEEEEEEEcCC
Q 004164 212 SLQTFMVVADKENS 225 (771)
Q Consensus 212 ~l~~f~~v~~k~~~ 225 (771)
.-+ +++||+.++.
T Consensus 171 s~E-~y~v~~~~~~ 183 (191)
T 3dou_A 171 SSE-IYIMFFGFKA 183 (191)
T ss_dssp CCE-EEEEEEEECC
T ss_pred Cce-EEEEEeeecc
Confidence 334 4455665543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.4e-11 Score=122.03 Aligned_cols=109 Identities=10% Similarity=0.001 Sum_probs=87.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++.++....|. ++++||++|.|++.|++++.- ...+++++.+|+.+.+....
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~----------- 125 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPR-QTHKVIPLKGLWEDVAPTLP----------- 125 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGG-CSSEEEEEESCHHHHGGGSC-----------
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhh-CCCceEEEeehHHhhccccc-----------
Confidence 45679999999999999999888764 899999999999999999843 34678999999998866544
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-cHHHHHHHHHccCCCcEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-~~~fl~~~~~~L~~~Gilv~ 687 (771)
...||.|+.|....... ..++. -..+++.++++|+|||+|++
T Consensus 126 --------------------~~~FD~i~~D~~~~~~~------~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 126 --------------------DGHFDGILYDTYPLSEE------TWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp --------------------TTCEEEEEECCCCCBGG------GTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred --------------------ccCCceEEEeeeecccc------hhhhcchhhhhhhhhheeCCCCEEEE
Confidence 36799999987554211 22222 36788999999999999986
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.8e-11 Score=120.28 Aligned_cols=101 Identities=13% Similarity=0.271 Sum_probs=85.2
Q ss_pred CcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
.+||+||+|+|..+.+|...+| ..+|++||+|+.+++.|++++ |+ .+++++++++|+.+++....
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-~~~~i~~~~gda~~~l~~~~---------- 126 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-SPSRVRFLLSRPLDVMSRLA---------- 126 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-CGGGEEEECSCHHHHGGGSC----------
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcCcEEEEEcCHHHHHHHhc----------
Confidence 4899999999999999998875 679999999999999999998 44 12689999999999977652
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||+|++|....+ -..+++.+.+.|+|||+++++
T Consensus 127 ---------------------~~~fD~V~~d~~~~~-------------~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 127 ---------------------NDSYQLVFGQVSPMD-------------LKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp ---------------------TTCEEEEEECCCTTT-------------HHHHHHHHHHHEEEEEEEEET
T ss_pred ---------------------CCCcCeEEEcCcHHH-------------HHHHHHHHHHHcCCCcEEEEe
Confidence 257999999864331 267999999999999999985
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-11 Score=124.36 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=89.2
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF 130 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~ 130 (771)
+...+.+.+. .++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++.....+ ++++++++|+.+. +
T Consensus 98 l~~~~l~~~~----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~ 172 (276)
T 2b3t_A 98 LVEQALARLP----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-L 172 (276)
T ss_dssp HHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-G
T ss_pred HHHHHHHhcc----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-c
Confidence 3344444443 35679999999999999999865 44599999999999998877665433 4799999999874 4
Q ss_pred CCCCccEEEeccccccc-------------cC-----cccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 131 MDETFDVILDKGGLDAL-------------ME-----PELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l-------------~~-----~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++++||+|+++...... +. ..++......++.++.++|+|||++++..
T Consensus 173 ~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 173 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 46789999997433221 10 01111346789999999999999998864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=115.38 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=83.9
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (771)
|.....+...+...+......++.+|||+|||+|.++..++..|..+|+++|+|+.+++.++++.. +++++++|+.
T Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~ 105 (200)
T 1ne2_A 30 YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVS 105 (200)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGG
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHH
Confidence 334344444444444211124678999999999999999998877689999999999998876653 7999999999
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+++ ++||+|++...+++..... ...+++++.++| |+.+++..
T Consensus 106 ~~~---~~~D~v~~~~p~~~~~~~~-----~~~~l~~~~~~~--g~~~~~~~ 147 (200)
T 1ne2_A 106 EIS---GKYDTWIMNPPFGSVVKHS-----DRAFIDKAFETS--MWIYSIGN 147 (200)
T ss_dssp GCC---CCEEEEEECCCC------------CHHHHHHHHHHE--EEEEEEEE
T ss_pred HCC---CCeeEEEECCCchhccCch-----hHHHHHHHHHhc--CcEEEEEc
Confidence 865 6899999999998876432 247889999988 55555443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.5e-10 Score=114.84 Aligned_cols=105 Identities=17% Similarity=0.263 Sum_probs=88.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+.+||+||+|+|..+..+...+| ..+|++||+++.+++.|++++ |+ .++++++++|+.+++....
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~l~~~~-------- 132 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV--DQRVTLREGPALQSLESLG-------- 132 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHTCC--------
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHhcC--------
Confidence 457999999999999999999988 789999999999999999998 54 4689999999999887643
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
....||+|++|.... ....+|+.+.+.|+|||+|++.-+
T Consensus 133 ----------------------~~~~fD~V~~d~~~~-------------~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 133 ----------------------ECPAFDLIFIDADKP-------------NNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ----------------------SCCCCSEEEECSCGG-------------GHHHHHHHHHHTCCTTCEEEEECC
T ss_pred ----------------------CCCCeEEEEECCchH-------------HHHHHHHHHHHhcCCCeEEEEeCC
Confidence 124799999976322 126799999999999999998644
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=124.73 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=91.5
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (771)
.....+...+.. .++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.++++....+ .++++.++|+.+.
T Consensus 62 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 62 SLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHHHHHhcCC---CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc
Confidence 455556666654 6789999999999999999998743 469999999999999887765544 5699999999886
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
...+++||+|++..+++++. +++.++|||||++++...
T Consensus 139 ~~~~~~fD~Iv~~~~~~~~~-------------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 139 VPEFSPYDVIFVTVGVDEVP-------------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CGGGCCEEEEEECSBBSCCC-------------HHHHHHEEEEEEEEEEBC
T ss_pred cccCCCeEEEEEcCCHHHHH-------------HHHHHhcCCCcEEEEEEC
Confidence 55568999999999998763 467889999999998753
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-11 Score=140.83 Aligned_cols=107 Identities=19% Similarity=0.219 Sum_probs=88.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC--CCCCCCccEEEecccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--QFMDETFDVILDKGGL 144 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--~~~~~sFDlVi~~~~l 144 (771)
.+.+|||||||.|.++..|++.|. +|||||+|+.+|+.|+..+.+.+ .+++|.+++++++ .+++++||+|++.+++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 457999999999999999999998 99999999999999988776654 5799999999987 4667899999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+.++.. -..+..+.+.|+++|..++....
T Consensus 145 ehv~~~~~-----~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 145 HHIVHLHG-----IDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp HHHHHHHC-----HHHHHHHHHHHHHHSSEEEEECC
T ss_pred hcCCCHHH-----HHHHHHHHHHhccccceeeEEec
Confidence 99976542 12344577778888777666654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=126.25 Aligned_cols=105 Identities=20% Similarity=0.122 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.++.+|||||||+|.++..+++.. ..+++++|+ +.+++.++++....+ .+++++.+|+.+ +++. .||+|++..+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 257 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV 257 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence 467899999999999999999874 348999999 999998887765443 479999999976 4443 4999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++++.+.. ...++++++++|+|||++++.+.
T Consensus 258 l~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 258 LLNWSDED-----ALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCHHH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 99876543 56899999999999999999887
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=118.00 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=90.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC------CeEEEEcCCHHHHHHHHHHhhcC------CCCcE
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF------HGITNVDFSKVVISDMLRRNVRD------RSDMR 119 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~------~~V~~vDiS~~~i~~~~~~~~~~------~~~i~ 119 (771)
.....+.+.+.. ...++.+|||+|||+|.++..+++... .+|+++|+++.+++.++++.... ..+++
T Consensus 65 ~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~ 143 (227)
T 2pbf_A 65 HMHALSLKRLIN-VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFK 143 (227)
T ss_dssp HHHHHHHHHHTT-TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEE
T ss_pred HHHHHHHHHHHh-hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEE
Confidence 344455555531 125778999999999999999988732 58999999999999888776543 35799
Q ss_pred EEEeecCCCC----CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 120 WRVMDMTSMQ----FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 120 ~~~~D~~~l~----~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.++|+.+.. ...++||+|++...++++ +.++.++|+|||++++....
T Consensus 144 ~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 144 IIHKNIYQVNEEEKKELGLFDAIHVGASASEL-------------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp EEECCGGGCCHHHHHHHCCEEEEEECSBBSSC-------------CHHHHHHEEEEEEEEEEEEE
T ss_pred EEECChHhcccccCccCCCcCEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEcc
Confidence 9999998865 556889999998887754 46789999999999987653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=117.27 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=89.5
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcC------CCCcEEEEee
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMD 124 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~------~~~i~~~~~D 124 (771)
....+...+.. ...++.+|||+|||+|..+..+++. +. .+|+++|+|+.+++.++++.... ..++.+.++|
T Consensus 63 ~~~~~l~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 141 (226)
T 1i1n_A 63 MHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 141 (226)
T ss_dssp HHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHHHHHh-hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC
Confidence 34445555541 1257889999999999999999887 43 49999999999999887766442 3479999999
Q ss_pred cCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 125 MTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 125 ~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+......+++||+|++...++++ +.++.++|||||++++....
T Consensus 142 ~~~~~~~~~~fD~i~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 142 GRMGYAEEAPYDAIHVGAAAPVV-------------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp GGGCCGGGCCEEEEEECSBBSSC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred cccCcccCCCcCEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEec
Confidence 98766567889999988777654 46789999999999998754
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-11 Score=122.04 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=75.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (771)
+...+.+.+.. ..++.+|||+|||+|.++..+++.+. .+++++|+|+.+++.++++....+.+++++++|+.+ +++
T Consensus 17 ~~~~~~~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~ 93 (215)
T 4dzr_A 17 LVEEAIRFLKR--MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLI 93 (215)
T ss_dssp HHHHHHHHHTT--CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHH
T ss_pred HHHHHHHHhhh--cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhh
Confidence 34445555532 13678999999999999999999842 489999999999998877664444478899999987 555
Q ss_pred C-----CCccEEEeccccccccCcc-------------------cchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 132 D-----ETFDVILDKGGLDALMEPE-------------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 132 ~-----~sFDlVi~~~~l~~l~~~~-------------------~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+ ++||+|+++..++...... .+......+++++.++|+|||++++++..
T Consensus 94 ~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 94 ERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 5 8999999975543322110 01111378999999999999996666544
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=119.27 Aligned_cols=114 Identities=19% Similarity=0.268 Sum_probs=91.0
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-C-CcEEEEeecCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTS 127 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~-~-~i~~~~~D~~~ 127 (771)
.....+...+.. .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.+++.....+ + ++++.++|+.+
T Consensus 80 ~~~~~i~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 80 KDAALIVAYAGI---SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred hHHHHHHHhhCC---CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence 334456666654 67899999999999999999988 4 4699999999999998887765433 3 49999999986
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
. +++++||+|++. .+++. .++.++.++|+|||++++.....
T Consensus 157 ~-~~~~~~D~v~~~-----~~~~~-------~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 157 G-IEEENVDHVILD-----LPQPE-------RVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp C-CCCCSEEEEEEC-----SSCGG-------GGHHHHHHHEEEEEEEEEEESSH
T ss_pred c-cCCCCcCEEEEC-----CCCHH-------HHHHHHHHHcCCCCEEEEEECCH
Confidence 4 677889999973 23322 68999999999999999988653
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=132.00 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||||||+|.++..+++.+..+|+++|+|+ +++.+++.....+ .+++++.+|+.+++++ ++||+|++...+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 234 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCH
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCch
Confidence 46789999999999999999988777999999999 8888877665444 5799999999998765 689999998887
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii 176 (771)
+++.... ....+.+++++|+|||++++
T Consensus 235 ~~~~~e~-----~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 235 YMLFNER-----MLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHTCHH-----HHHHHHHGGGGEEEEEEEES
T ss_pred HhcCcHH-----HHHHHHHHHHhcCCCCEEEE
Confidence 7765443 45677789999999999985
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=118.41 Aligned_cols=101 Identities=9% Similarity=0.084 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCC--CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSM--QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~~D~~~l--~~~~~sFDlVi~ 140 (771)
++.+|||+|||+|..+..|++. + .++|+++|+++.+++.+++.....+ .+++++++|+.+. .+++++||+|++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 4459999999999999999985 2 3699999999999999988776544 3699999998765 244689999997
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
...... ...+++++.++|||||++++.+
T Consensus 136 d~~~~~----------~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 136 QVSPMD----------LKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CCCTTT----------HHHHHHHHHHHEEEEEEEEETT
T ss_pred cCcHHH----------HHHHHHHHHHHcCCCcEEEEeC
Confidence 543221 4578999999999999999854
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=8.6e-10 Score=111.83 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=88.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+.+||+||+|+|..+.++...+| ..+|++||+++.+++.|++++ |+ .++++++.+|+.+++.....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~------- 128 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL--NDRVEVRTGLALDSLQQIEN------- 128 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHH-------
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh-------
Confidence 457999999999999999999988 689999999999999999987 44 56899999999998877541
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.....||+|++|.... ....+|+.+.+.|+|||++++.-+
T Consensus 129 ---------------------~~~~~fD~v~~d~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 129 ---------------------EKYEPFDFIFIDADKQ-------------NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp ---------------------TTCCCCSEEEECSCGG-------------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred ---------------------cCCCCcCEEEEcCCcH-------------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 0114699999975421 226899999999999999998643
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=119.31 Aligned_cols=108 Identities=14% Similarity=0.238 Sum_probs=88.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
..+.+||+||+|+|..+.++...+| ..+|++||+||.++++|++++ |+ +++++++++|+.+++......
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~l~~~----- 141 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV--EHKINFIESDAMLALDNLLQG----- 141 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHS-----
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHhc-----
Confidence 3567999999999999999999887 689999999999999999998 54 568999999999998765310
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
......||+|++|.+.. ....+|+.+.++|+|||++++.
T Consensus 142 ---------------------~~~~~~fD~I~~d~~~~-------------~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 142 ---------------------QESEGSYDFGFVDADKP-------------NYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp ---------------------TTCTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------cCCCCCcCEEEECCchH-------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 00125799999985322 1378999999999999999984
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.9e-11 Score=119.83 Aligned_cols=109 Identities=18% Similarity=0.114 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCC-HHHHHHH---HHHhhcCC-CCcEEEEeecCCCCCC-CCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFS-KVVISDM---LRRNVRDR-SDMRWRVMDMTSMQFM-DETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS-~~~i~~~---~~~~~~~~-~~i~~~~~D~~~l~~~-~~sFDlVi~ 140 (771)
++.+|||||||+|.++..|++. ...+|+|+|+| +.|++.+ +++....+ +++.|.++|+.+++.. .+.+|.|++
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 6789999999999999999865 33489999999 7776655 44443333 5799999999998531 144555554
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
........ .........++.+++|+|||||++++..
T Consensus 104 ~~~~~~~~--~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 104 LFPWGTLL--EYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp ESCCHHHH--HHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred eCCCcHHh--hhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 33221110 0000001368999999999999999854
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-10 Score=118.78 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=87.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
..+.+||+||+|+|..+.++...+| ..+|++||+++.+++.|++++ |+ +++++++++|+.+++......
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~l~~~----- 150 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPVLDEMIKD----- 150 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHS-----
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCeEEEECCHHHHHHHHHhc-----
Confidence 3567999999999999999999887 679999999999999999997 44 568999999999998765310
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
+.....||+|++|.+.. ....+|+.+.++|+|||++++.
T Consensus 151 ---------------------~~~~~~fD~V~~d~~~~-------------~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 151 ---------------------EKNHGSYDFIFVDADKD-------------NYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp ---------------------GGGTTCBSEEEECSCST-------------THHHHHHHHHHHBCTTCCEEEE
T ss_pred ---------------------cCCCCCEEEEEEcCchH-------------HHHHHHHHHHHhCCCCeEEEEe
Confidence 00025799999986422 1278999999999999999985
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.1e-10 Score=122.07 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=89.0
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcC------------C
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD------------R 115 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~------------~ 115 (771)
++.....+...+.. .++.+|||+|||+|.++..++.. |. .+|+++|+++.+++.+++..... .
T Consensus 90 ~~~~~~~~l~~l~~---~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~ 166 (336)
T 2b25_A 90 FPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 166 (336)
T ss_dssp CHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccC
Confidence 33434455556554 57899999999999999999987 54 69999999999999888766431 2
Q ss_pred CCcEEEEeecCCC--CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 116 SDMRWRVMDMTSM--QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 116 ~~i~~~~~D~~~l--~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
.++++.++|+.+. ++++++||+|++.. ..+. .++.++.++|+|||++++.......+
T Consensus 167 ~~v~~~~~d~~~~~~~~~~~~fD~V~~~~-----~~~~-------~~l~~~~~~LkpgG~lv~~~~~~~~~ 225 (336)
T 2b25_A 167 DNVDFIHKDISGATEDIKSLTFDAVALDM-----LNPH-------VTLPVFYPHLKHGGVCAVYVVNITQV 225 (336)
T ss_dssp CCEEEEESCTTCCC-------EEEEEECS-----SSTT-------TTHHHHGGGEEEEEEEEEEESSHHHH
T ss_pred CceEEEECChHHcccccCCCCeeEEEECC-----CCHH-------HHHHHHHHhcCCCcEEEEEeCCHHHH
Confidence 5799999999887 56677899999743 2222 46899999999999999888764443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-10 Score=118.96 Aligned_cols=104 Identities=11% Similarity=0.018 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-CCC--CCCccEEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QFM--DETFDVIL 139 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~~~--~~sFDlVi 139 (771)
.++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.++++....+ .+++++++|+.+. +.. .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 35789999999999999999987 2 4599999999999999988775544 4799999998763 322 34899999
Q ss_pred eccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+...... ...+++++.++|||||++++.+..
T Consensus 142 ~d~~~~~----------~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 142 IDADKPN----------NPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp ECSCGGG----------HHHHHHHHHHTCCTTCEEEEECCS
T ss_pred ECCchHH----------HHHHHHHHHHhcCCCeEEEEeCCC
Confidence 7543211 458999999999999999887654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-09 Score=122.02 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=87.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHH-------HHHhhcCC---CCcEE
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDM-------LRRNVRDR---SDMRW 120 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~-------~~~~~~~~---~~i~~ 120 (771)
.+...+.+.+.. .++.+|||||||+|.++..++.. |..+|+|+|+++.+++.+ ++++...+ .++++
T Consensus 229 ~~v~~ml~~l~l---~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 229 NFLSDVYQQCQL---KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 344445555543 57899999999999999999986 666899999999998877 66554444 57999
Q ss_pred EEeecCCC--CC--CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 121 RVMDMTSM--QF--MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 121 ~~~D~~~l--~~--~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+++|.... ++ ..++||+|++..++.. ++ ...+|.++.++|||||++++.+
T Consensus 306 i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~---~d-----~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 306 SLKKSFVDNNRVAELIPQCDVILVNNFLFD---ED-----LNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECCTTCC---HH-----HHHHHHHHHTTCCTTCEEEESS
T ss_pred EEcCccccccccccccCCCCEEEEeCcccc---cc-----HHHHHHHHHHhCCCCeEEEEee
Confidence 98764432 22 2478999998765521 22 5688999999999999999875
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=118.14 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhc---------CCCCcEEEEeecCC-CC--CCCCC
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR---------DRSDMRWRVMDMTS-MQ--FMDET 134 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~---------~~~~i~~~~~D~~~-l~--~~~~s 134 (771)
++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.++++... ...++.++++|+.+ ++ +++++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 568999999999999999998853 4899999999999988766543 23689999999987 55 77889
Q ss_pred ccEEEeccccccccCcccch------HHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 135 FDVILDKGGLDALMEPELGH------KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~------~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|.|+... +++.... .....++.++.++|+|||++++.+..
T Consensus 129 ~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 129 LSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp EEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 99998432 2221000 00147999999999999999997754
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=125.77 Aligned_cols=106 Identities=12% Similarity=0.146 Sum_probs=89.3
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC-CCCCCccEEEecccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~-~~~~sFDlVi~~~~l 144 (771)
..+|||||||+|.++..+++. +..+++++|+ +.+++.++++....+ .+++++.+|+.+.+ +..+.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 789999999999999999987 3358999999 779988877665433 46999999999875 234679999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|++.+.+ ...++++++++|+|||++++.+..
T Consensus 259 h~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 259 HYFDARE-----AREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp GGSCHHH-----HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCHHH-----HHHHHHHHHHHcCCCCEEEEEEec
Confidence 9986544 679999999999999999998865
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=9.8e-11 Score=119.03 Aligned_cols=117 Identities=9% Similarity=0.022 Sum_probs=87.1
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (771)
....+..++.. .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+.
T Consensus 46 ~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 122 (221)
T 3u81_A 46 KGQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDL 122 (221)
T ss_dssp HHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHh---cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHH
Confidence 33444444432 35689999999999999999985 2 3599999999999998887765443 3699999998653
Q ss_pred -CC-C----CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 129 -QF-M----DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 129 -~~-~----~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+. . .++||+|++.+..++... ...++..+ ++|+|||++++.+..
T Consensus 123 l~~~~~~~~~~~fD~V~~d~~~~~~~~-------~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 123 IPQLKKKYDVDTLDMVFLDHWKDRYLP-------DTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp GGGTTTTSCCCCCSEEEECSCGGGHHH-------HHHHHHHT-TCCCTTCEEEESCCC
T ss_pred HHHHHHhcCCCceEEEEEcCCcccchH-------HHHHHHhc-cccCCCeEEEEeCCC
Confidence 32 2 268999998776665432 23567777 999999999987655
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-10 Score=125.43 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||||||+|.++...++.|..+|++||.|+ +++.|++.....+ .+++++.+|++++.++ ++||+|++...-+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY 160 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence 5789999999999999999999988999999997 7777766554444 5799999999999876 6899999876555
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii 176 (771)
.+.... .+..++....++|+|||.++-
T Consensus 161 ~l~~e~----~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 161 GLLHES----MLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TBTTTC----SHHHHHHHHHHHEEEEEEEES
T ss_pred cccccc----hhhhHHHHHHhhCCCCceECC
Confidence 544332 267889999999999999763
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.7e-10 Score=123.42 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=88.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++....+ .+++++.+|+.+ +++. .||+|++..+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 258 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV 258 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence 467899999999999999999874 348999999 999998887765443 379999999976 4443 4999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++++.+.+ ...++++++++|+|||++++.+..
T Consensus 259 l~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 259 LLNWPDHD-----AVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp GGGSCHHH-----HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccCCCHHH-----HHHHHHHHHHhcCCCcEEEEEEEe
Confidence 99876543 568999999999999999999865
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-10 Score=122.39 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=87.8
Q ss_pred CeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 70 PQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.+|||+|||+|..+..+++. +..+++++|+ +.+++.++++.... ..+++++.+|+.+ +++ ++||+|++..++|+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~ 245 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGD 245 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccC
Confidence 89999999999999999887 3348999999 99999887765432 2579999999987 555 68999999999998
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.+.. ...++++++++|+|||++++.+..
T Consensus 246 ~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 246 LDEAA-----SLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp CCHHH-----HHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CCHHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 76543 569999999999999999999865
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.5e-10 Score=117.21 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhc---CCCeEEEEcCCHHHHHHHHHHhhcC---CC--C----------------------
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD---RS--D---------------------- 117 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~---g~~~V~~vDiS~~~i~~~~~~~~~~---~~--~---------------------- 117 (771)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.+++..... +. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999876 2348999999999999887655332 11 1
Q ss_pred ---cE-------------EEEeecCCCCC-----CCCCccEEEeccccccccCcc--cchHHHHHHHHHHHHccccCeEE
Q 004164 118 ---MR-------------WRVMDMTSMQF-----MDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKF 174 (771)
Q Consensus 118 ---i~-------------~~~~D~~~l~~-----~~~sFDlVi~~~~l~~l~~~~--~~~~~~~~~l~~i~rvLkpGG~~ 174 (771)
++ +.++|+.+... ...+||+|+++..+....... .+......++.++.++|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 66 99999987431 345899999987665543311 11234779999999999999999
Q ss_pred EEEEcC
Q 004164 175 VCLTLA 180 (771)
Q Consensus 175 ii~~~~ 180 (771)
+++...
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 996554
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-10 Score=116.10 Aligned_cols=118 Identities=13% Similarity=0.118 Sum_probs=92.0
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeec
Q 004164 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (771)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~ 125 (771)
..+.....+..++.. .++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++....+ .++.++++|+
T Consensus 38 ~~~~~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 114 (233)
T 2gpy_A 38 MDLLGMESLLHLLKM---AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA 114 (233)
T ss_dssp CCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCG
T ss_pred cCHHHHHHHHHHHhc---cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH
Confidence 344455556655543 467899999999999999999873 3599999999999998887765544 4699999999
Q ss_pred CCC-CCC--CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 126 TSM-QFM--DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 126 ~~l-~~~--~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.+. +.. +++||+|++...... ...+++++.++|+|||++++.+.
T Consensus 115 ~~~~~~~~~~~~fD~I~~~~~~~~----------~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 115 LQLGEKLELYPLFDVLFIDAAKGQ----------YRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GGSHHHHTTSCCEEEEEEEGGGSC----------HHHHHHHHGGGEEEEEEEEEETT
T ss_pred HHHHHhcccCCCccEEEECCCHHH----------HHHHHHHHHHHcCCCeEEEEEcC
Confidence 875 332 578999998665431 45899999999999999998753
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.7e-10 Score=118.02 Aligned_cols=105 Identities=14% Similarity=0.093 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcC-CHHHHHHHHHHh-----hcCC------CCcEEEEeecCCCC--C--
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF-SKVVISDMLRRN-----VRDR------SDMRWRVMDMTSMQ--F-- 130 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDi-S~~~i~~~~~~~-----~~~~------~~i~~~~~D~~~l~--~-- 130 (771)
.++.+|||+|||+|.++..++..|..+|+++|+ |+.+++.+++.. ...+ .++++...|..+.. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 367899999999999999999888779999999 899999887765 2222 36888877765531 2
Q ss_pred --CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccc---c--CeEEEEEE
Q 004164 131 --MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK---S--GGKFVCLT 178 (771)
Q Consensus 131 --~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLk---p--GG~~ii~~ 178 (771)
.+++||+|++..++++... ...+++.+.++|+ | ||+++++.
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~-------~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQA-------HDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGG-------HHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred hccCCCCCEEEEeCcccChHH-------HHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 3578999999888887543 5589999999999 9 99877653
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.7e-10 Score=114.08 Aligned_cols=127 Identities=14% Similarity=0.053 Sum_probs=98.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
+++.+|||||||+|.++..++..+. .+|+++|+++.+++.+++.....+ .++++.++|..+...+++.||+|+..|.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 3678999999999999999999864 589999999999998877765554 4699999999887655557999987665
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 204 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~ 204 (771)
...+ +..++.++.+.|+++|+|++............+ ...+|.+.-..+-
T Consensus 100 Gg~l---------I~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L--~~~Gf~i~~E~lv 149 (230)
T 3lec_A 100 GGRL---------IADILNNDIDKLQHVKTLVLQPNNREDDLRKWL--AANDFEIVAEDIL 149 (230)
T ss_dssp CHHH---------HHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHH--HHTTEEEEEEEEE
T ss_pred chHH---------HHHHHHHHHHHhCcCCEEEEECCCChHHHHHHH--HHCCCEEEEEEEE
Confidence 4432 568999999999999999998865433222111 1348888776664
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.8e-10 Score=112.99 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=88.8
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~ 132 (771)
..+...+.. .++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++.....+ +++.+...|+.+..+++
T Consensus 81 ~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 81 FYIALKLNL---NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred HHHHHhcCC---CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence 345555543 57889999999999999999988 4499999999999998877765444 57999999998854366
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++||+|++. ..++ ..+++++.++|+|||++++.....
T Consensus 157 ~~~D~v~~~-----~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 157 GIFHAAFVD-----VREP-------WHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp TCBSEEEEC-----SSCG-------GGGHHHHHHHBCTTCEEEEEESSH
T ss_pred CcccEEEEC-----CcCH-------HHHHHHHHHHcCCCCEEEEEeCCH
Confidence 789999973 2232 267999999999999999998753
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.4e-10 Score=117.62 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=88.5
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFM 131 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~ 131 (771)
.+...+.. .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.+++.....+ .++++..+|+.+. ++
T Consensus 103 ~i~~~~~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 178 (277)
T 1o54_A 103 FIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FD 178 (277)
T ss_dssp HHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CS
T ss_pred HHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-cc
Confidence 34444443 57889999999999999999987 4 4699999999999998877765444 4789999999886 66
Q ss_pred CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++||+|++. .+++ ..++.++.++|+|||++++.+...
T Consensus 179 ~~~~D~V~~~-----~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 179 EKDVDALFLD-----VPDP-------WNYIDKCWEALKGGGRFATVCPTT 216 (277)
T ss_dssp CCSEEEEEEC-----CSCG-------GGTHHHHHHHEEEEEEEEEEESSH
T ss_pred CCccCEEEEC-----CcCH-------HHHHHHHHHHcCCCCEEEEEeCCH
Confidence 6789999973 2332 277999999999999999998753
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.2e-10 Score=116.27 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=86.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHH-hhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVR-EMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~-~~~~~~~~~~~ 616 (771)
.+.+||+||+|+|..+.++...+|..+|++||+++.+++.|++++ ++ .++++++.+|+.+++. ...
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~-------- 140 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF--ENQVRIIEGNALEQFENVND-------- 140 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC--TTTEEEEESCGGGCHHHHTT--------
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECCHHHHHHhhcc--------
Confidence 457999999999999999999888889999999999999999987 43 4689999999998876 432
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
.+||+|++|....+ ...+|+.+.+.|+|||+|++.
T Consensus 141 ------------------------~~fD~V~~~~~~~~-------------~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 141 ------------------------KVYDMIFIDAAKAQ-------------SKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp ------------------------SCEEEEEEETTSSS-------------HHHHHHHHGGGEEEEEEEEEE
T ss_pred ------------------------CCccEEEEcCcHHH-------------HHHHHHHHHHhcCCCeEEEEe
Confidence 57999999854321 267999999999999999984
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-10 Score=115.89 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=89.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CC------CeEEEEcCCHHHHHHHHHHhhcC------CCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRD------RSD 117 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~------~~V~~vDiS~~~i~~~~~~~~~~------~~~ 117 (771)
+.+...+.+.+.. ...++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.++++.... ..+
T Consensus 68 p~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 146 (227)
T 1r18_A 68 PHMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ 146 (227)
T ss_dssp HHHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence 3444555666531 1257889999999999999999885 42 58999999999999887766443 357
Q ss_pred cEEEEeecCCCCCCC-CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 118 MRWRVMDMTSMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 118 i~~~~~D~~~l~~~~-~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++.++|+.+ ++++ ++||+|++...++++ +.++.++|||||++++....
T Consensus 147 v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 147 LLIVEGDGRK-GYPPNAPYNAIHVGAAAPDT-------------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEEESCGGG-CCGGGCSEEEEEECSCBSSC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred eEEEECCccc-CCCcCCCccEEEECCchHHH-------------HHHHHHHhcCCCEEEEEEec
Confidence 9999999987 4444 789999998888765 36789999999999988754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-10 Score=110.86 Aligned_cols=107 Identities=23% Similarity=0.250 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CC---------CeEEEEcCCHHHHHHHHHHhhcCCCCcEEE-EeecCCCC------
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GF---------HGITNVDFSKVVISDMLRRNVRDRSDMRWR-VMDMTSMQ------ 129 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~---------~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~-~~D~~~l~------ 129 (771)
.++.+|||+|||+|.++..+++. +. .+|+++|+|+.. ..++++++ .+|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PLEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cCCCCeEEEeccCCCHHHHHHHH
Confidence 46789999999999999999987 53 589999999821 12568899 89987653
Q ss_pred --CCCCCccEEEeccccccccCcccc----hHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 130 --FMDETFDVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 130 --~~~~sFDlVi~~~~l~~l~~~~~~----~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
+++++||+|++..+++........ ......+++++.++|+|||+|++..+..+.
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 150 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ 150 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 345689999997765543221100 111358899999999999999999876543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.06 E-value=3e-09 Score=115.76 Aligned_cols=176 Identities=15% Similarity=0.144 Sum_probs=110.3
Q ss_pred chhHHHHHHHHhhCCC-CCCCCCeEEEEcCCcchhHHHHHhcCC------CeEEEEcCCHHHHHHHHHHhhcCCCCcEEE
Q 004164 49 EWPQLRDPLISLIGAP-TSSPPPQILVPGCGNSRLSEHLYDAGF------HGITNVDFSKVVISDMLRRNVRDRSDMRWR 121 (771)
Q Consensus 49 ~~~~l~~~l~~~l~~~-~~~~~~~ILDiGCG~G~ls~~La~~g~------~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~ 121 (771)
....+...+..++... .+.++.+|||+|||+|.++..+++... .+++|+|+++.+++.++......+.++.+.
T Consensus 110 TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~ 189 (344)
T 2f8l_A 110 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLL 189 (344)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEE
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEE
Confidence 3345544444443210 113568999999999999998887631 489999999999998877654444578999
Q ss_pred EeecCCCCCCCCCccEEEeccccccccCccc----------c-hHHHHHHHHHHHHccccCeEEEEEEcCc---chhhcc
Q 004164 122 VMDMTSMQFMDETFDVILDKGGLDALMEPEL----------G-HKLGNQYLSEVKRLLKSGGKFVCLTLAE---SHVLGL 187 (771)
Q Consensus 122 ~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~----------~-~~~~~~~l~~i~rvLkpGG~~ii~~~~~---~~~~~~ 187 (771)
++|..... ..++||+|+++..+.++...+. + ......++..+.+.|+|||+++++.... ......
T Consensus 190 ~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ 268 (344)
T 2f8l_A 190 HQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAK 268 (344)
T ss_dssp ESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHH
T ss_pred ECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHH
Confidence 99987643 4578999999988765532210 0 0012368999999999999999987431 000112
Q ss_pred hhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEEcCC
Q 004164 188 LFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (771)
Q Consensus 188 l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (771)
+...+ ..+|...+..++...-........+++.+|.+.
T Consensus 269 ir~~l~~~~~~~~ii~lp~~~F~~~~~~~~i~vl~k~~~ 307 (344)
T 2f8l_A 269 VDKFIKKNGHIEGIIKLPETLFKSEQARKSILILEKADV 307 (344)
T ss_dssp HHHHHHHHEEEEEEEECCGGGSCC-CCCEEEEEEEECCT
T ss_pred HHHHHHhCCeEEEeeeCChhhccCCCCceEEEEEECCCC
Confidence 22222 224544455554322222335557777777554
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-10 Score=120.91 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE-EEeecCCCC---CCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW-RVMDMTSMQ---FMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~-~~~D~~~l~---~~~~sFDlVi~~~ 142 (771)
.++.+|||+|||||.++..|++.|..+|+|+|+|+.|++.+.+. .+++.. ...|+..++ ++..+||+|++..
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~----~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ----DDRVRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT----CTTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CcccceecccCceecchhhCCCCCCCEEEEEe
Confidence 35679999999999999999999888999999999999864332 233322 223444332 3445699999887
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
+++++ ..+|.+++++|+|||+++++
T Consensus 160 sf~sl----------~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 160 SFISL----------NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp SSSCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred eHhhH----------HHHHHHHHHHcCcCCEEEEE
Confidence 77654 27899999999999999997
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=116.05 Aligned_cols=103 Identities=12% Similarity=0.090 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-CCC----CCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-FMD----ETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~~~----~sFDl 137 (771)
++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+. + +.. ++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 5689999999999999999987 2 4699999999999999988775544 4599999998654 2 211 78999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+....... ...+++++.++|+|||++++.+..
T Consensus 144 v~~~~~~~~----------~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 144 IYIDADKAN----------TDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEECSCGGG----------HHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEECCCHHH----------HHHHHHHHHHhcCCCcEEEEeCCC
Confidence 996543211 558999999999999999987654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.8e-10 Score=114.49 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-CC---CCCccE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-FM---DETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~~---~~sFDl 137 (771)
.++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+. + +. .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 35789999999999999999987 2 3599999999999998887765444 3699999999764 1 11 267999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|++...... ...++.++.++|+|||++++.+..
T Consensus 137 v~~d~~~~~----------~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 137 IFIDADKQN----------NPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EEECSCGGG----------HHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEEcCCcHH----------HHHHHHHHHHhcCCCcEEEEeCCC
Confidence 997654222 458999999999999988876543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-10 Score=119.99 Aligned_cols=107 Identities=12% Similarity=0.248 Sum_probs=87.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+.+||+||+|+|..+.+|...+| ..+|++||++|.+++.|++++ |+ .++++++++|+.+++......
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~~~~~------ 131 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ--EHKIKLRLGPALDTLHSLLNE------ 131 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC--TTTEEEEESCHHHHHHHHHHH------
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHhhc------
Confidence 457999999999999999999886 679999999999999999998 54 468999999999998765310
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.....||+|++|.... -...+|+.+.+.|+|||++++.-
T Consensus 132 ---------------------~~~~~fD~V~~d~~~~-------------~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 132 ---------------------GGEHQFDFIFIDADKT-------------NYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp ---------------------HCSSCEEEEEEESCGG-------------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ---------------------cCCCCEeEEEEcCChH-------------HhHHHHHHHHHhcCCCeEEEEEC
Confidence 0025799999986422 12678999999999999999853
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.2e-10 Score=113.44 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=95.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
+++.+|||||||+|.++..|+..+. .+|+++|+++.+++.+++.....+ .++++.++|..+...++++||+|+..+.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 3678999999999999999999864 589999999999999877765554 3599999999886544446999987554
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeec
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 203 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i 203 (771)
... .+..++.++.+.|+++|+|++............+. ..+|.+.-..+
T Consensus 100 Gg~---------lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~--~~Gf~i~~E~l 148 (244)
T 3gnl_A 100 GGT---------LIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSE--QNNWLITSEAI 148 (244)
T ss_dssp CHH---------HHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH--HHTEEEEEEEE
T ss_pred chH---------HHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHH--HCCCEEEEEEE
Confidence 433 26689999999999999999988653332222111 33787765554
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.2e-10 Score=118.03 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=84.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc----C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeec
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~----g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~ 125 (771)
+.....+..++.. .++.+|||||||+|..+..|++. + ..+|+++|+|+.+++.++ ...++++++++|+
T Consensus 67 p~~~~~l~~~l~~---~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~~~v~~~~gD~ 139 (236)
T 2bm8_A 67 PDTQAVYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDMENITLHQGDC 139 (236)
T ss_dssp HHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGCTTEEEEECCS
T ss_pred HHHHHHHHHHHHh---cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccCCceEEEECcc
Confidence 3444455555543 24579999999999999999886 2 359999999998887654 2236899999999
Q ss_pred CCC---CCCC-CCccEEEeccccccccCcccchHHHHHHHHHHHH-ccccCeEEEEEEc
Q 004164 126 TSM---QFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR-LLKSGGKFVCLTL 179 (771)
Q Consensus 126 ~~l---~~~~-~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~r-vLkpGG~~ii~~~ 179 (771)
.+. ++.+ .+||+|++.+. + . . ...++.++.+ +|||||++++.+.
T Consensus 140 ~~~~~l~~~~~~~fD~I~~d~~-~--~--~-----~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 140 SDLTTFEHLREMAHPLIFIDNA-H--A--N-----TFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SCSGGGGGGSSSCSSEEEEESS-C--S--S-----HHHHHHHHHHHTCCTTCEEEECSC
T ss_pred hhHHHHHhhccCCCCEEEECCc-h--H--h-----HHHHHHHHHHhhCCCCCEEEEEeC
Confidence 984 5433 47999997654 2 1 2 5689999997 9999999999754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-10 Score=123.64 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhh--cCCCCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~--~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.+..+|||||||+|.++..+++.. ..+++++|+++ ++. +++.. ...++++++.+|+. .+++ +||+|++..+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~v 256 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRI 256 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESC
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--cccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehh
Confidence 467899999999999999998873 34799999954 443 22211 12357999999997 3445 8999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|++.+.+ ..++|++++++|||||++++.+..
T Consensus 257 lh~~~d~~-----~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 257 LHNWGDED-----SVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp GGGSCHHH-----HHHHHHHHHHTCCTTCEEEEEECC
T ss_pred ccCCCHHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 99987654 569999999999999999998865
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-10 Score=112.42 Aligned_cols=100 Identities=18% Similarity=0.292 Sum_probs=84.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+.+||+||+|+|..+..+...+| ..+|++||+++.+++.|++++ ++ .++++++.+|+.+++....
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~-------- 125 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL--IDRVELQVGDPLGIAAGQR-------- 125 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG--GGGEEEEESCHHHHHTTCC--------
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CceEEEEEecHHHHhccCC--------
Confidence 457899999999999999999887 779999999999999999887 43 4689999999998865432
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
. ||+|++|.... ....+++.+.+.|+|||++++.
T Consensus 126 ------------------------~-fD~v~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 126 ------------------------D-IDILFMDCDVF-------------NGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp ------------------------S-EEEEEEETTTS-------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred ------------------------C-CCEEEEcCChh-------------hhHHHHHHHHHhcCCCeEEEEE
Confidence 5 99999985322 1278999999999999999984
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.3e-10 Score=118.78 Aligned_cols=121 Identities=15% Similarity=0.043 Sum_probs=89.6
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~ 133 (771)
+...+.. .++.+|||+|||+|..+..+++. +.++|+++|+|+.+++.++++....+ .++.++++|+.+++..++
T Consensus 110 ~~~~l~~---~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~ 186 (315)
T 1ixk_A 110 PPVALDP---KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNV 186 (315)
T ss_dssp HHHHHCC---CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCC
T ss_pred HHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccc
Confidence 3445543 57889999999999999999986 23589999999999998877765444 479999999998765567
Q ss_pred CccEEEecc------ccccccCcc------c---chHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 134 TFDVILDKG------GLDALMEPE------L---GHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 134 sFDlVi~~~------~l~~l~~~~------~---~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+||+|++.. ++...++.. . .......++.++.++|||||++++++.+
T Consensus 187 ~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 187 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 899999742 233211100 0 0011368999999999999999998865
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.8e-10 Score=113.53 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-CCCCCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QFMDETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~~~~~sFDlVi~~~ 142 (771)
++.+|||+|||+|..+..+++. + ..+|+++|+|+.+++.+++.....+ .+++++++|+.+. +..++ ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 4679999999999999999887 2 3599999999999998877664433 3689999999764 44446 99999763
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.. .. ...+++++.++|+|||++++.+
T Consensus 135 ~~-----~~-----~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 DV-----FN-----GADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT-----SC-----HHHHHHHHGGGEEEEEEEEEES
T ss_pred Ch-----hh-----hHHHHHHHHHhcCCCeEEEEEC
Confidence 21 11 5689999999999999998854
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=9e-11 Score=120.75 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc----CCCCcEEEE-eecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR----DRSDMRWRV-MDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~----~~~~i~~~~-~D~~~l~~~~~sFDlVi~~ 141 (771)
.++.+|||||||+|.++..|++.|..+|+|+|+|+.|++.++++... ...++.+.. .|+....++..+||+++
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~-- 113 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSF-- 113 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSS--
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEh--
Confidence 35679999999999999999999867999999999999876554311 112333322 22221112233444443
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..+ ..++.+++++|||||++++..
T Consensus 114 ---~~l----------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 114 ---ISL----------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp ---SCG----------GGTHHHHHHHSCTTCEEEEEE
T ss_pred ---hhH----------HHHHHHHHHhccCCCEEEEEE
Confidence 322 278999999999999999864
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=119.50 Aligned_cols=101 Identities=19% Similarity=0.073 Sum_probs=84.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.++ ..++++|+.+|+.+ +++.+ |+|++..++|
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh 270 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP-----QFPGVTHVGGDMFK-EVPSG--DTILMKWILH 270 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CCTTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh-----hcCCeEEEeCCcCC-CCCCC--CEEEehHHhc
Confidence 46789999999999999999886 3358999999 77775442 23689999999988 77754 9999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++.+.+ ..++|++++++|+|||++++.+...
T Consensus 271 ~~~d~~-----~~~~L~~~~~~L~pgG~l~i~e~~~ 301 (364)
T 3p9c_A 271 DWSDQH-----CATLLKNCYDALPAHGKVVLVQCIL 301 (364)
T ss_dssp GSCHHH-----HHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred cCCHHH-----HHHHHHHHHHHcCCCCEEEEEEecc
Confidence 886544 6799999999999999999998753
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.4e-10 Score=111.99 Aligned_cols=108 Identities=19% Similarity=0.306 Sum_probs=88.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+.+||+||+|+|..+.++...+| ..+|++||+++.+++.|++.+ |+ .++++++++|+.+++.....
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~------- 134 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL--SDKIGLRLSPAKDTLAELIH------- 134 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHT-------
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeCCHHHHHHHhhh-------
Confidence 457999999999999999999887 789999999999999999998 44 46799999999998876541
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.....+||+|++|.... ....+++.+.+.|+|||+|++.-+
T Consensus 135 --------------------~~~~~~fD~v~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 135 --------------------AGQAWQYDLIYIDADKA-------------NTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp --------------------TTCTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred --------------------ccCCCCccEEEECCCHH-------------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 00125799999976321 126799999999999999998643
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-10 Score=119.61 Aligned_cols=132 Identities=19% Similarity=0.059 Sum_probs=93.4
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-C--CcEEEE
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-S--DMRWRV 122 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~--~i~~~~ 122 (771)
|+.+.......+.+++.. ..++.+|||+|||+|.++..++..|. +|+++|+|+.+++.+++.+...+ . ++++++
T Consensus 133 ~f~dq~~~~~~l~~~~~~--~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~ 209 (332)
T 2igt_A 133 VFPEQIVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC 209 (332)
T ss_dssp CCGGGHHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC
T ss_pred echHHHHHHHHHHHHHHh--cCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 444444445556666631 02567999999999999999999888 99999999999998877664433 2 489999
Q ss_pred eecCCCCC----CCCCccEEEeccccccccCc---ccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 123 MDMTSMQF----MDETFDVILDKGGLDALMEP---ELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 123 ~D~~~l~~----~~~sFDlVi~~~~l~~l~~~---~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+.++.. ..++||+|++.-........ .........++.++.++|+|||++++....
T Consensus 210 ~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 210 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp SCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 99987531 14689999985432221100 001123678999999999999997776644
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=109.35 Aligned_cols=160 Identities=10% Similarity=0.071 Sum_probs=93.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+.+||++|+|+|.++..+...+|..++++||+++.+++.|++.+..... +++++.+|+.+.+.....
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~---------- 97 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAE---------- 97 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHH----------
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhh----------
Confidence 456799999999999999999999888999999999999999998854222 789999999997665220
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-----------------cHHHHHHHHHccCCC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----------------EGSFLLTVKDALSEQ 682 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-----------------~~~fl~~~~~~L~~~ 682 (771)
...+||+|+.|.--... ..+...+.... -..+++.+++.|+||
T Consensus 98 -------------------~~~~fD~i~~npp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 157 (215)
T 4dzr_A 98 -------------------RGRPWHAIVSNPPYIPT-GEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG 157 (215)
T ss_dssp -------------------TTCCBSEEEECCCCCC-------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred -------------------ccCcccEEEECCCCCCC-ccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence 12579999996311000 00000001100 178899999999999
Q ss_pred cE-EEEEeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEecCC
Q 004164 683 GL-FIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 730 (771)
Q Consensus 683 Gi-lv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~ 730 (771)
|. +++.+..........++..+..-|..+.......+...++++.+..
T Consensus 158 G~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 158 RAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREP 206 (215)
T ss_dssp SEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEECC
T ss_pred CeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEcC
Confidence 99 6665543343333333333345576666666555667888887654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-10 Score=111.23 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=75.9
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC---CCCCccEEEecc
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF---MDETFDVILDKG 142 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~---~~~sFDlVi~~~ 142 (771)
..++.+|||+|||. +++|+|+.|++.++++.. .++++.++|+.++++ ++++||+|++..
T Consensus 10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~---~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~ 71 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG---NEGRVSVENIKQLLQSAHKESSFDIILSGL 71 (176)
T ss_dssp CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT---TTSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc---cCcEEEEechhcCccccCCCCCEeEEEECC
Confidence 36789999999996 239999999998887753 249999999999887 789999999999
Q ss_pred ccccc-cCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 143 GLDAL-MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 143 ~l~~l-~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+++++ .+. ..++++++|+|||||+|++..
T Consensus 72 ~l~~~~~~~-------~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 72 VPGSTTLHS-------AEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp STTCCCCCC-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcccCH-------HHHHHHHHHHCCCCEEEEEEc
Confidence 99998 554 489999999999999999954
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=119.98 Aligned_cols=100 Identities=18% Similarity=0.096 Sum_probs=84.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.++ ..++++|+.+|+.+ +++++ |+|++..++|
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh 272 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP-----AFSGVEHLGGDMFD-GVPKG--DAIFIKWICH 272 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CCTTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh-----hcCCCEEEecCCCC-CCCCC--CEEEEechhh
Confidence 45689999999999999999887 3358999999 87776442 23689999999987 67654 9999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++.+.+ ..++|++++++|+|||++++.+..
T Consensus 273 ~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 273 DWSDEH-----CLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp GBCHHH-----HHHHHHHHHHHSCTTCEEEEEECC
T ss_pred cCCHHH-----HHHHHHHHHHHcCCCCEEEEEEec
Confidence 887654 678999999999999999999865
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.7e-10 Score=118.91 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=84.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEeecCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQ 129 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~--~i~~~~~D~~~l~ 129 (771)
.+...+.+++.. .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++.....+. +++|+++|+.+.
T Consensus 110 ~lv~~~l~~~~~---~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~- 185 (284)
T 1nv8_A 110 ELVELALELIRK---YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP- 185 (284)
T ss_dssp HHHHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-
T ss_pred HHHHHHHHHhcc---cCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-
Confidence 344445555432 25679999999999999999988435999999999999988777655442 499999999873
Q ss_pred CCCCCc---cEEEeccccccccC---cc--cchHH-------HHHHHHHHH-HccccCeEEEEEE
Q 004164 130 FMDETF---DVILDKGGLDALME---PE--LGHKL-------GNQYLSEVK-RLLKSGGKFVCLT 178 (771)
Q Consensus 130 ~~~~sF---DlVi~~~~l~~l~~---~~--~~~~~-------~~~~l~~i~-rvLkpGG~~ii~~ 178 (771)
++ ++| |+|+++-....... ++ ..+.. -..+++++. +.|+|||++++..
T Consensus 186 ~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 186 FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 33 579 99999722211000 00 00000 126889999 9999999999753
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=110.49 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=94.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCC-CccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDE-TFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~-sFDlVi~~~ 142 (771)
+++.+|||||||+|.++..++..+. .+|+++|+++.+++.+++.....+ .++++.++|..+. ++.+ .||+|+..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l~~~~~~D~IviaG 92 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-FEETDQVSVITIAG 92 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-CCGGGCCCEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-cccCcCCCEEEEcC
Confidence 3678999999999999999999864 589999999999998877765555 3699999998642 2323 699999765
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecC
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 204 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~ 204 (771)
.... .+..++.++...|+++|+|++....+.......+ ...+|.+.-..+-
T Consensus 93 ~Gg~---------~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L--~~~Gf~i~~e~lv 143 (225)
T 3kr9_A 93 MGGR---------LIARILEEGLGKLANVERLILQPNNREDDLRIWL--QDHGFQIVAESIL 143 (225)
T ss_dssp ECHH---------HHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHH--HHTTEEEEEEEEE
T ss_pred CChH---------HHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH--HHCCCEEEEEEEE
Confidence 4332 2568999999999999999997764333222221 1347887766653
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=8.4e-10 Score=118.15 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCCCC--CCCCccEEE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQF--MDETFDVIL 139 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l~~--~~~sFDlVi 139 (771)
++.+|||||||+|.++..+++. +..+|+++|+++.+++.+++.+.. ..++++++.+|+.++.. .+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 5689999999999999999987 456999999999999988776521 24689999999987653 468999999
Q ss_pred eccccccccCcccchHH-HHHHHHHHHHccccCeEEEEEEcC
Q 004164 140 DKGGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~-~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+..+....+... + -..++++++++|+|||++++....
T Consensus 175 ~d~~~~~~~~~~----l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 175 IDTTDPAGPASK----LFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EECC-------------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCCCccccchh----hhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 865544322110 0 158899999999999999987644
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=114.23 Aligned_cols=103 Identities=8% Similarity=0.022 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++.+...+ .++.++++|+.+.+. .++||+|++....
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 46789999999999999999987 34689999999999998877665544 578999999998743 5789999986543
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
. ...++.++.+.|+|||++++.....
T Consensus 197 ----~-------~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ----K-------THKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ----S-------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ----c-------HHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 1 2377999999999999999887754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=114.88 Aligned_cols=111 Identities=14% Similarity=0.042 Sum_probs=85.1
Q ss_pred CCCeEEEEcCCc--chhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC----C--CCCcc
Q 004164 68 PPPQILVPGCGN--SRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF----M--DETFD 136 (771)
Q Consensus 68 ~~~~ILDiGCG~--G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~----~--~~sFD 136 (771)
...+|||||||+ +..+..+++. +..+|+++|+|+.||+.+++++.... .+++|+++|+.+.+. + .+.||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 346999999997 4445555443 44599999999999999988775432 369999999988521 1 34565
Q ss_pred -----EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 137 -----VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 137 -----lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
.|+++.+|||+.+.+. ...++.++.+.|+|||+|++.+++.+
T Consensus 158 ~~~p~av~~~avLH~l~d~~~----p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDD----AVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGC----HHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cCCcchHHhhhhHhcCCchhh----HHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 6889999999987542 35899999999999999999988754
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-10 Score=121.47 Aligned_cols=108 Identities=15% Similarity=0.086 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc---CCCCcEEE--EeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---DRSDMRWR--VMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~---~~~~i~~~--~~D~~~l~~~~~sFDlVi~~ 141 (771)
.++.+|||+|||+|.++..+++. ++|+|+|+|+ ++..+.++... .+.++.++ ++|+.+++ +++||+|++.
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd 155 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCD 155 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEEC
T ss_pred CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEEC
Confidence 57889999999999999999988 4899999999 53322111100 01268999 89999876 6899999997
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCe--EEEEEEcC
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGG--KFVCLTLA 180 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG--~~ii~~~~ 180 (771)
.+ +..............+|.++.++||||| .|++..+.
T Consensus 156 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 156 IG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 76 4332221110001137899999999999 99998877
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.4e-10 Score=116.69 Aligned_cols=121 Identities=18% Similarity=0.066 Sum_probs=89.5
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC---
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF--- 130 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~--- 130 (771)
+..++.. .++.+|||+|||+|..+..+++. +.++|+++|+|+.+++.++++....+ .++.++++|+.+++.
T Consensus 75 ~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~ 151 (274)
T 3ajd_A 75 PPIVLNP---REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLL 151 (274)
T ss_dssp HHHHHCC---CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH
T ss_pred HHHHhCC---CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhh
Confidence 4445543 57889999999999999999884 44699999999999998877765544 479999999988754
Q ss_pred -CCCCccEEEeccccccccC----c----c---cchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 131 -MDETFDVILDKGGLDALME----P----E---LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 131 -~~~sFDlVi~~~~l~~l~~----~----~---~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
..++||+|++......... + + ........++.++.++|||||++++.+.+
T Consensus 152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 2578999997632221100 0 0 00011468999999999999999998865
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-09 Score=109.45 Aligned_cols=133 Identities=15% Similarity=0.172 Sum_probs=98.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..+....|...|++||+++.+++.|++...-..-.+++++.+|+.+++...-
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~------------ 101 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI------------ 101 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS------------
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc------------
Confidence 45789999999999999999999999999999999999999988521112459999999999877532
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
....||.|++.. +++..........++...|++.+.+.|+|||+|++-. ....+.+.+
T Consensus 102 ------------------~~~~~d~v~~~~--~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t--d~~~~~~~~ 159 (218)
T 3dxy_A 102 ------------------PDNSLRMVQLFF--PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT--DWEPYAEHM 159 (218)
T ss_dssp ------------------CTTCEEEEEEES--CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE--SCHHHHHHH
T ss_pred ------------------CCCChheEEEeC--CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe--CCHHHHHHH
Confidence 136799999843 2221111112234667889999999999999998654 455555555
Q ss_pred HHHHHHh
Q 004164 701 ISRMKMV 707 (771)
Q Consensus 701 ~~~l~~v 707 (771)
...+...
T Consensus 160 ~~~~~~~ 166 (218)
T 3dxy_A 160 LEVMSSI 166 (218)
T ss_dssp HHHHHTS
T ss_pred HHHHHhC
Confidence 6666544
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=111.04 Aligned_cols=107 Identities=15% Similarity=0.243 Sum_probs=87.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
..+.+||+||+|+|.++..+...+| ..+|++||+++.+++.|++++ |+ .++++++.+|+.+++......
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~~~~~~~~----- 140 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALETLDELLAA----- 140 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHHT-----
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CCeEEEEEcCHHHHHHHHHhc-----
Confidence 3457999999999999999999877 679999999999999999998 44 468999999999988765410
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
....+||+|++|.... ....+++.+.+.|+|||++++.
T Consensus 141 ----------------------~~~~~~D~v~~d~~~~-------------~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 141 ----------------------GEAGTFDVAVVDADKE-------------NCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp ----------------------TCTTCEEEEEECSCST-------------THHHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------------CCCCCccEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 0015799999975422 1268999999999999999984
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-10 Score=119.40 Aligned_cols=116 Identities=11% Similarity=0.046 Sum_probs=87.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (771)
.....+..++.. .++.+|||+|||+|..+..|++. + .++|+++|+++.+++.+++.....+ .+++++++|+.+
T Consensus 47 ~~~~~l~~l~~~---~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 123 (242)
T 3r3h_A 47 EQAQFMQMLIRL---TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD 123 (242)
T ss_dssp HHHHHHHHHHHH---HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHhh---cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 333444444432 35679999999999999999985 2 3599999999999988877765544 479999999976
Q ss_pred CC-CC-----CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 128 MQ-FM-----DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 128 l~-~~-----~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.. .. +++||+|++...... ...+++++.++|+|||++++.+..
T Consensus 124 ~l~~~~~~~~~~~fD~V~~d~~~~~----------~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 124 TLHSLLNEGGEHQFDFIFIDADKTN----------YLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp HHHHHHHHHCSSCEEEEEEESCGGG----------HHHHHHHHHHHEEEEEEEEEECSS
T ss_pred HHHHHhhccCCCCEeEEEEcCChHH----------hHHHHHHHHHhcCCCeEEEEECCc
Confidence 52 11 478999997553211 458899999999999999986543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.2e-09 Score=108.00 Aligned_cols=108 Identities=17% Similarity=0.282 Sum_probs=87.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+.+||+||+|+|..+..+...+| ..+|++||++|.+++.|++++ |+ .++++++.+|+.+++.....
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~l~~l~~------- 142 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV--AEKISLRLGPALATLEQLTQ------- 142 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHHHHHHT-------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh-------
Confidence 457899999999999999999887 679999999999999999987 55 46899999999998877641
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
......||+|++|.... ....+++.+.+.|+|||++++.-+
T Consensus 143 --------------------~~~~~~fD~V~~d~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 143 --------------------GKPLPEFDLIFIDADKR-------------NYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp --------------------SSSCCCEEEEEECSCGG-------------GHHHHHHHHHHTEEEEEEEEEECT
T ss_pred --------------------cCCCCCcCEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEeCC
Confidence 00015799999976421 126799999999999999998643
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.2e-10 Score=121.46 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.+..+|||||||+|.++..+++.. ..+++++|+ +.+++.++ ..++++++.+|+.+ +++. ||+|++..++|
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh 278 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP-----PLSGIEHVGGDMFA-SVPQ--GDAMILKAVCH 278 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CCTTEEEEECCTTT-CCCC--EEEEEEESSGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhh-----hcCCCEEEeCCccc-CCCC--CCEEEEecccc
Confidence 456899999999999999999874 347899999 87876442 23679999999988 6664 99999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++.+.+ ...+|++++++|+|||++++.+..
T Consensus 279 ~~~d~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 279 NWSDEK-----CIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCHHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 986544 569999999999999999998764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-10 Score=120.38 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhh---cCCCCcEEE--EeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV---RDRSDMRWR--VMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~---~~~~~i~~~--~~D~~~l~~~~~sFDlVi~~ 141 (771)
.++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+.+... ..+.++.++ ++|+.+++ +++||+|++.
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd 147 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCD 147 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEe
Confidence 57889999999999999999988 5899999999 4322211100 011268999 89999876 6899999997
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCe--EEEEEEcC
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGG--KFVCLTLA 180 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG--~~ii~~~~ 180 (771)
.+ ++......+......+|..+.++|+||| .|++..+.
T Consensus 148 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 148 VG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred Cc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 76 4433221110001138899999999999 99998877
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-10 Score=113.09 Aligned_cols=117 Identities=17% Similarity=0.103 Sum_probs=88.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeec
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~ 125 (771)
.+.....+..++.. .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .++.+.++|+
T Consensus 45 ~~~~~~~l~~l~~~---~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~ 121 (239)
T 2hnk_A 45 SPEEGQFLNILTKI---SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121 (239)
T ss_dssp CHHHHHHHHHHHHH---HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred CHHHHHHHHHHHHh---hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence 33444455555533 36789999999999999999987 3 4599999999999998887765443 3489999998
Q ss_pred CCC-C--------------CCC--CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 126 TSM-Q--------------FMD--ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 126 ~~l-~--------------~~~--~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.+. + |++ ++||+|++...... ...+++++.++|+|||++++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~----------~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN----------YPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp HHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG----------HHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH----------HHHHHHHHHHHcCCCeEEEEEcc
Confidence 652 2 222 78999998644322 45889999999999999998764
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=7e-10 Score=121.02 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..++|+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~p--~~D~v~~~~~lh~ 258 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----SNNLTYVGGDMFT-SIP--NADAVLLKYILHN 258 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----BTTEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-----CCCcEEEeccccC-CCC--CccEEEeehhhcc
Confidence 5689999999999999999987 3348999999 988875532 2569999999977 555 3999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHcccc---CeEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKS---GGKFVCLTLA 180 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkp---GG~~ii~~~~ 180 (771)
+.+.+ ..+++++++++||| ||++++.+..
T Consensus 259 ~~d~~-----~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 259 WTDKD-----CLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp SCHHH-----HHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred CCHHH-----HHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 86543 56999999999999 9999999865
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=113.86 Aligned_cols=101 Identities=15% Similarity=0.047 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-----CCCCcc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-----MDETFD 136 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-----~~~sFD 136 (771)
++.+|||||||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+. + + ++++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 5679999999999999999986 2 3599999999999998887765544 4699999998764 3 2 257899
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+|++..... . ...+++++.++|+|||++++..
T Consensus 159 ~V~~d~~~~-----~-----~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDADKD-----N-----YLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSCST-----T-----HHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCchH-----H-----HHHHHHHHHHhCCCCeEEEEec
Confidence 999754311 1 5689999999999999998765
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-09 Score=110.01 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=106.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC---C-CCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF---T-QDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~---~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||+||+|+|.++..|....|..+|++||+++.+++.|++.+.. . ..++++++.+|..++.......
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~----- 109 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEA----- 109 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHT-----
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhh-----
Confidence 345689999999999999999999888999999999999999999753 2 2457999999998875432100
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCCCCCCCcCCc---------CcccHHHHHHHHHccCCCcEE
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDSSSGMTCPAA---------DFVEGSFLLTVKDALSEQGLF 685 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~-~s~d~~~g~s~pp~---------~f~~~~fl~~~~~~L~~~Gil 685 (771)
.....+||+|+++. +.... +..+|.. ...-..+++.+.++|+|||.|
T Consensus 110 ---------------------~~~~~~fD~Vv~nPPy~~~~--~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l 166 (260)
T 2ozv_A 110 ---------------------GLPDEHFHHVIMNPPYNDAG--DRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQL 166 (260)
T ss_dssp ---------------------TCCTTCEEEEEECCCC-----------------------CCHHHHHHHHHHHEEEEEEE
T ss_pred ---------------------ccCCCCcCEEEECCCCcCCC--CCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEE
Confidence 01135799999962 11100 1111110 112468999999999999999
Q ss_pred EEEeccCChhHHHHHHHHHHHhccceEEeee----cCCccEEEEEecC
Q 004164 686 IVNLVSRSQATKDMVISRMKMVFNHLFCLQL----EEDVNLVLFGLSS 729 (771)
Q Consensus 686 v~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~----~~~~N~Vl~a~~~ 729 (771)
++-. +.. ....++..+++.|..+....+ ....+.|++....
T Consensus 167 ~~~~--~~~-~~~~~~~~l~~~~~~~~i~~v~~~~~~~~~~~lv~~~k 211 (260)
T 2ozv_A 167 SLIS--RPQ-SVAEIIAACGSRFGGLEITLIHPRPGEDAVRMLVTAIK 211 (260)
T ss_dssp EEEE--CGG-GHHHHHHHHTTTEEEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred EEEE--cHH-HHHHHHHHHHhcCCceEEEEEcCCCCCCceEEEEEEEe
Confidence 9854 222 344577777776764433322 3456777776543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.3e-09 Score=116.77 Aligned_cols=126 Identities=13% Similarity=0.178 Sum_probs=93.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (771)
.+...+..+. . .++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.+++++...+ .++++.++|+.++
T Consensus 205 ~la~~l~~~~-~---~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 205 SIANAMIELA-E---LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL 280 (373)
T ss_dssp HHHHHHHHHH-T---CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred HHHHHHHHhh-c---CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 4444555555 3 5788999999999999999998864 489999999999999988776555 4799999999999
Q ss_pred CCCCCCccEEEeccccccccCcc-cchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 129 QFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~-~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
++++++||+|+++..+....... .-......+++++.++| ||.+++++.....
T Consensus 281 ~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~ 334 (373)
T 3tm4_A 281 SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKA 334 (373)
T ss_dssp GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHH
T ss_pred CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHH
Confidence 88889999999976654432211 11223578899999999 6666666654333
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=9.2e-09 Score=104.98 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
+..+|||||||.|.++..+. +...|+++|+++.+++.+++.....+.+..+.++|....+.+ ++||+|+..-+++++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~L 181 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLPLL 181 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHHHH
T ss_pred CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHHHHh
Confidence 57899999999999999887 556999999999999988887766678899999999988765 589999999888888
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.+.+.+ ..+ ++...|+++|.+|-..
T Consensus 182 E~q~~~-----~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 182 EREQAG-----SAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHSTT-----HHH-HHHHHCBCSEEEEEEE
T ss_pred hhhchh-----hHH-HHHHHhcCCCEEEEcC
Confidence 655432 444 7888999999888765
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=117.92 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC--CCCCCCccEEE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM--QFMDETFDVIL 139 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l--~~~~~sFDlVi 139 (771)
...+|||||||+|.++..+++. +..+|+++|+|+.+++.+++.+.. ..++++++++|+.+. .+++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 4679999999999999999987 346999999999999988776543 246899999998764 23467899999
Q ss_pred eccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+........ .. . .....++++++++|+|||++++..
T Consensus 200 ~d~~~p~~~-~~-~-l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 200 VDSSDPIGP-AK-E-LFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp ECCCCTTSG-GG-G-GGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCccCc-ch-h-hhHHHHHHHHHHhcCCCcEEEEec
Confidence 854321111 01 0 003589999999999999999863
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.5e-09 Score=113.56 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=87.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.+..+|||||||+|.++..+++. +..+++..|. |.+++.+++...... ++++++.+|+.+.+.+ .+|+|+...+|
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vl 254 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVL 254 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSG
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeec
Confidence 45679999999999999999987 3347888897 778888876654332 6899999999876544 57999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|.+.+++ ..++|+++++.|+|||++++++..
T Consensus 255 h~~~d~~-----~~~iL~~~~~al~pgg~lli~e~~ 285 (353)
T 4a6d_A 255 HDWADGK-----CSHLLERIYHTCKPGGGILVIESL 285 (353)
T ss_dssp GGSCHHH-----HHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ccCCHHH-----HHHHHHHHHhhCCCCCEEEEEEee
Confidence 9987655 678999999999999999999864
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=115.31 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
.+.+|||||||+|.++..+++.+ ..+|+++|+++.+++.+++.+.. ..++++++.+|+.+. +..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 56899999999999999999873 46999999999999988776533 247899999998763 444688999998
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
........... .....++++++++|+|||++++...
T Consensus 175 d~~~~~~~~~~---l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 175 DSSDPMGPAES---LFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp ECC--------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCCcchh---hhHHHHHHHHHhccCCCeEEEEecC
Confidence 54432211100 0124789999999999999998763
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-09 Score=113.89 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
.+.+|||||||+|.++..+++. +..+|+++|+++.+++.+++.+.. ..++++++.+|+.+. +..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 4689999999999999999988 567999999999999988765522 246899999998763 334578999998
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
............ ....++++++++|+|||++++...+
T Consensus 155 d~~~~~~~~~~l---~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 155 DSTEPVGPAVNL---FTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp SCSSCCSCCCCC---STTHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCCCCCCcchhh---hHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 654322111000 0147899999999999999987543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-09 Score=114.92 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=84.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc------CCCCcEEEEeecCCC-CCCCCCccEEE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSM-QFMDETFDVIL 139 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~------~~~~i~~~~~D~~~l-~~~~~sFDlVi 139 (771)
.+.+|||||||+|.++..+++. +..+|+++|+++.+++.+++.+.. ..++++++++|+.+. +..+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 4579999999999999999987 456999999999999988776532 146899999999873 44468899999
Q ss_pred ecccccc-ccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 140 DKGGLDA-LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 140 ~~~~l~~-l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+....+. ...+. .......++++++++|+|||++++...
T Consensus 157 ~d~~~~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 157 IDLTDPVGEDNPA-RLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EECCCCBSTTCGG-GGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECCCCcccccCcc-hhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 8765443 00110 000035899999999999999998753
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-09 Score=114.55 Aligned_cols=108 Identities=18% Similarity=0.143 Sum_probs=83.2
Q ss_pred CeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCC--CCCCCCccEEEeccccc
Q 004164 70 PQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM--QFMDETFDVILDKGGLD 145 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~-~~~i~~~~~D~~~l--~~~~~sFDlVi~~~~l~ 145 (771)
.+|||||||+|.++..+++. +..+|++||+++.+++.+++.+... .++++++++|+.++ .+++++||+|++.....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 49999999999999999984 3348999999999999887776432 46899999999875 34568999999864333
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
....... .-..++++++++|+|||+|++....
T Consensus 171 ~~~~~~L---~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 171 AITPQNF---TTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp SCCCGGG---SBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccchhh---hHHHHHHHHHHhcCCCcEEEEEecC
Confidence 2111110 0258999999999999999987754
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-09 Score=115.35 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc------------CCCCcEEEEeecCCC-CCCCCC
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR------------DRSDMRWRVMDMTSM-QFMDET 134 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~------------~~~~i~~~~~D~~~l-~~~~~s 134 (771)
.+.+|||||||+|.++..+++.+..+|+++|+++.+++.+++.+ . ..++++++.+|+.+. +. +++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 46799999999999999999886679999999999999887765 2 246799999998663 23 578
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
||+|++...... ..... -....++++++++|+|||++++...
T Consensus 153 fD~Ii~d~~~~~-~~~~~--l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 153 FDVIIADSTDPV-GPAKV--LFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEEECCCCC--------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEECCCCCC-Ccchh--hhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 999998554321 11110 0025789999999999999998753
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=108.93 Aligned_cols=112 Identities=9% Similarity=0.154 Sum_probs=85.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+.+||+||+|+|.++.++...++ ..+|++||++|.+++.|++++ |+ +++++++.+|+.+++.....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~l~~~~~------- 128 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL--QDKVTILNGASQDLIPQLKK------- 128 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHGGGTTT-------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC--CCceEEEECCHHHHHHHHHH-------
Confidence 467999999999999999998765 679999999999999999987 44 46899999999998766431
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
......||+|++|..... ..-..++++.+ +.|+|||+|++.-+..
T Consensus 129 --------------------~~~~~~fD~V~~d~~~~~----------~~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 129 --------------------KYDVDTLDMVFLDHWKDR----------YLPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp --------------------TSCCCCCSEEEECSCGGG----------HHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred --------------------hcCCCceEEEEEcCCccc----------chHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 001257999999752221 01123567777 9999999999865443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-09 Score=112.13 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=72.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (771)
+.+...+.+.+.. .++.+|||+|||+|.++..|++.+. +|+++|+++.+++.++++....+ ++++++++|+.++
T Consensus 14 ~~i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 14 PLIINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence 4455566666654 5788999999999999999999876 99999999999998887764433 4799999999988
Q ss_pred CCCCCCccEEEecccccc
Q 004164 129 QFMDETFDVILDKGGLDA 146 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~ 146 (771)
+++ +||+|+++...++
T Consensus 90 ~~~--~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 90 DLP--FFDTCVANLPYQI 105 (285)
T ss_dssp CCC--CCSEEEEECCGGG
T ss_pred cch--hhcEEEEecCccc
Confidence 765 7999999755544
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-09 Score=113.05 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcC-----CCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~-----~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
++.+|||||||+|.++..+++.. ..+|+++|+++.+++.+++.+... .++++++.+|+.+. +..+++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 56899999999999999999873 469999999999999887765432 46899999998764 323678999998
Q ss_pred ccccccccCcccchHH-HHHHHHHHHHccccCeEEEEEEc
Q 004164 141 KGGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~-~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..+........ . -..++++++++|+|||++++...
T Consensus 158 d~~~~~~~~~~----l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSDPIGPAET----LFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCCTTTGGGG----GSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchh----hhHHHHHHHHHHhcCCCcEEEEECC
Confidence 54432211111 1 15899999999999999998754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=110.13 Aligned_cols=103 Identities=15% Similarity=0.044 Sum_probs=81.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC----CCCC--CCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM----QFMD--ETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l----~~~~--~sFDl 137 (771)
++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+. +..+ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 5679999999999999999986 2 3599999999999998877654433 4689999997542 2333 78999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|++..... . ...+++++.++|+|||++++.+..
T Consensus 152 V~~d~~~~-----~-----~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 152 IFIDADKR-----N-----YPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEECSCGG-----G-----HHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EEECCCHH-----H-----HHHHHHHHHHHcCCCeEEEEeCCC
Confidence 99754321 1 568999999999999999987643
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-09 Score=115.03 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC-----CCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~-----~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
...+|||||||+|.++..+++. +..+|+++|+++.+++.+++.+... .++++++.+|+.+. +..+++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4579999999999999999987 4569999999999999887766432 46899999998763 334678999998
Q ss_pred ccccccccCcccchHHH-HHHHHHHHHccccCeEEEEEE
Q 004164 141 KGGLDALMEPELGHKLG-NQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~-~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.... .+.... ... ..++++++++|+|||++++..
T Consensus 188 d~~~-~~~~~~---~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSSD-PVGPAE---SLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-----------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCC-CCCcch---hhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 5532 221111 112 689999999999999999875
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=108.99 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=86.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (771)
.....+..++.. .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+
T Consensus 56 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 132 (229)
T 2avd_A 56 EQAQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 132 (229)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHh---cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence 333444444432 35689999999999999999986 2 4599999999999998887765444 579999999865
Q ss_pred C--CCCC----CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 128 M--QFMD----ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 128 l--~~~~----~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
. .+.+ ++||+|++..... . ...+++++.++|+|||++++.+.
T Consensus 133 ~~~~~~~~~~~~~~D~v~~d~~~~-----~-----~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 133 TLDELLAAGEAGTFDVAVVDADKE-----N-----CSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCST-----T-----HHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHhcCCCCCccEEEECCCHH-----H-----HHHHHHHHHHHcCCCeEEEEECC
Confidence 4 1211 6899999754311 1 56899999999999999998654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.1e-09 Score=116.49 Aligned_cols=131 Identities=19% Similarity=0.097 Sum_probs=93.3
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-C--CcEEEE
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-S--DMRWRV 122 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~--~i~~~~ 122 (771)
+|......+..+..++ .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.+...+ . +++|++
T Consensus 195 ff~~~~~~~~~~~~~~-----~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~ 269 (385)
T 2b78_A 195 IFLDQRQVRNELINGS-----AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 269 (385)
T ss_dssp SCGGGHHHHHHHHHTT-----TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred cCCcHHHHHHHHHHHh-----cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 4433334444555553 2578999999999999999998877799999999999998877765544 2 799999
Q ss_pred eecCCC-C-C--CCCCccEEEecccccccc--CcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 123 MDMTSM-Q-F--MDETFDVILDKGGLDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 123 ~D~~~l-~-~--~~~sFDlVi~~~~l~~l~--~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+|+.+. + . ...+||+|++........ ........+..++..+.++|+|||++++.+...
T Consensus 270 ~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 270 MDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999763 2 1 245899999754332110 011111235678889999999999999888653
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.1e-09 Score=110.29 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=92.4
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEe
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~ 123 (771)
|+.....-+..+.+++. ++.+|||+|||+|.++..++..|..+|+++|+++.+++.+++.....+ .+++++++
T Consensus 108 f~~~~~~er~ri~~~~~-----~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~ 182 (278)
T 3k6r_A 108 FSPANVKERVRMAKVAK-----PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182 (278)
T ss_dssp CCGGGHHHHHHHHHHCC-----TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred EcCCcHHHHHHHHHhcC-----CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeC
Confidence 55555555566777764 689999999999999999999887799999999999998876655444 46899999
Q ss_pred ecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+.+++. .+.||.|++...... ..++..+.++||+||.+.+.++.
T Consensus 183 D~~~~~~-~~~~D~Vi~~~p~~~-----------~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 183 DNRDFPG-ENIADRILMGYVVRT-----------HEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp CTTTCCC-CSCEEEEEECCCSSG-----------GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred cHHHhcc-ccCCCEEEECCCCcH-----------HHHHHHHHHHcCCCCEEEEEeee
Confidence 9998763 578999986533221 25678888999999998876654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.90 E-value=5e-09 Score=115.94 Aligned_cols=130 Identities=13% Similarity=0.029 Sum_probs=91.6
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeec
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~ 125 (771)
+|......+..+..++ .++.+|||+|||+|.++..++..|. .|+++|+|+.+++.+++.+...+....+.++|+
T Consensus 197 ~f~dqr~~r~~l~~~~-----~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~ 270 (393)
T 4dmg_A 197 YYLDQRENRRLFEAMV-----RPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEA 270 (393)
T ss_dssp SCGGGHHHHHHHHTTC-----CTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCH
T ss_pred cCCCHHHHHHHHHHHh-----cCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccH
Confidence 4444444444444443 2588999999999999999999887 599999999999988877655554456779998
Q ss_pred CCCC-CCCCCccEEEeccccccccCcc--cchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 126 TSMQ-FMDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 126 ~~l~-~~~~sFDlVi~~~~l~~l~~~~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
.+.. ...+.||+|++......-.... ........++..+.++|+|||++++.+.+.
T Consensus 271 ~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 271 LPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp HHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 7752 2134499999764332111000 001235688999999999999999888763
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.1e-09 Score=108.59 Aligned_cols=104 Identities=16% Similarity=0.272 Sum_probs=86.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
.+.+||+||+|.|.++..+...+|..+|++||+++.+++.|++.+ |+ .++++++.+|+.+++....
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~--------- 122 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL--ESRIELLFGDALQLGEKLE--------- 122 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCGGGSHHHHT---------
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECCHHHHHHhcc---------
Confidence 456899999999999999999998889999999999999999987 43 4679999999988766542
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....||+|++|.... ....+|+.+.+.|+|||++++.-
T Consensus 123 ---------------------~~~~fD~I~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 123 ---------------------LYPLFDVLFIDAAKG-------------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp ---------------------TSCCEEEEEEEGGGS-------------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred ---------------------cCCCccEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 015699999975422 23789999999999999999863
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-09 Score=109.44 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-----CCCCcc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-----MDETFD 136 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-----~~~sFD 136 (771)
+..+|||||||+|..+..+++. + ..+|+++|+++.+++.+++.....+ .+++++++|+.+. + + ++++||
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 5679999999999999999986 3 3699999999999998887765544 3699999998764 2 2 257899
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+|+...... ....+++++.++|+|||++++.+.
T Consensus 150 ~I~~d~~~~----------~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 150 FGFVDADKP----------NYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEECSCGG----------GHHHHHHHHHHHEEEEEEEEEECT
T ss_pred EEEECCchH----------HHHHHHHHHHHhcCCCeEEEEecC
Confidence 999753211 156899999999999999987653
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.1e-09 Score=113.64 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
++.+|||||||+|.++..+++. +..+|+++|+|+.+++.+++.+.. ..++++++++|+.+. +..+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4579999999999999999987 456999999999999988776543 146899999998763 334578999998
Q ss_pred ccccccccCcccchHHH-HHHHHHHHHccccCeEEEEEEcC
Q 004164 141 KGGLDALMEPELGHKLG-NQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~-~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
...- ...... ... ..++++++++|+|||++++...+
T Consensus 196 d~~~-p~~~~~---~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 196 DSSD-PIGPAE---TLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp ECCC-SSSGGG---GGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCcC-CCCcch---hhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 5431 111111 111 58999999999999999997643
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.9e-09 Score=117.07 Aligned_cols=122 Identities=18% Similarity=0.180 Sum_probs=91.1
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--C
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--F 130 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~ 130 (771)
.+...+.. .++.+|||+|||+|..+..++.. +.++|+++|+|+.+++.++++....+ .++.++++|+.+++ +
T Consensus 250 l~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~ 326 (450)
T 2yxl_A 250 VASIVLDP---KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEII 326 (450)
T ss_dssp HHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSS
T ss_pred HHHHhcCC---CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhh
Confidence 34445543 57889999999999999999986 32689999999999998877765544 47999999998876 5
Q ss_pred CCCCccEEEe------ccccccccCc------ccch---HHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 131 MDETFDVILD------KGGLDALMEP------ELGH---KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 131 ~~~sFDlVi~------~~~l~~l~~~------~~~~---~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++++||+|++ .+++...++. ++-. .....++.++.++|||||++++++.+
T Consensus 327 ~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 327 GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 5578999996 2333322211 1000 01268899999999999999998876
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.6e-09 Score=111.94 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
.+.+|||||||+|.++..+++. +..+|+++|+++.+++.+++.+.. ..++++++++|+.+. +..+++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4589999999999999999987 557999999999999988776532 246899999998763 444678999997
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
...-.+...... .....++++++++|+|||++++...+
T Consensus 170 d~~~~~~~~~~~--l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 170 DSTDPTAGQGGH--LFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EC------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCcccCchhh--hhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 533221111000 00258899999999999999987543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-09 Score=111.46 Aligned_cols=126 Identities=10% Similarity=0.052 Sum_probs=81.1
Q ss_pred HHHHHHHHhhCCCCC--CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecC
Q 004164 52 QLRDPLISLIGAPTS--SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~--~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~ 126 (771)
.....+...+..... .++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++....+ .+++++++|+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (254)
T 2h00_A 47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK 126 (254)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence 344445555543211 25679999999999999988876 23499999999999998887765544 34999999987
Q ss_pred CC---CCC---CCCccEEEeccccccccCc-cc-----c--hHHHHHHHHHHHHccccCeEEEEE
Q 004164 127 SM---QFM---DETFDVILDKGGLDALMEP-EL-----G--HKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 127 ~l---~~~---~~sFDlVi~~~~l~~l~~~-~~-----~--~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
+. +++ +++||+|+++..++..... .. . ......++.+++++|||||.+.++
T Consensus 127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 127 TLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 62 344 2689999998665543200 00 0 001235677888999998887655
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-09 Score=116.54 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcC----CHHHHHHHHHHhhcC-CCCcEEEEe-ecCCCCCCCCCccEEEe
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF----SKVVISDMLRRNVRD-RSDMRWRVM-DMTSMQFMDETFDVILD 140 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDi----S~~~i~~~~~~~~~~-~~~i~~~~~-D~~~l~~~~~sFDlVi~ 140 (771)
.++.+|||+|||+|.++..+++. ++|+++|+ ++.+++.+ ..... .+++.++++ |+..++ .++||+|++
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~s 154 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIP--PERCDTLLC 154 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCC--cCCCCEEEE
Confidence 56789999999999999999988 47999999 55433211 01111 156889988 888765 568999999
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
..+++ ......+......+|..+.++|||||.|++..+..
T Consensus 155 d~~~~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 155 DIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CCccc-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 77654 11111000001157899999999999999977654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.88 E-value=9.8e-09 Score=103.55 Aligned_cols=132 Identities=16% Similarity=0.183 Sum_probs=93.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..+....|..++++||+++.+++.|++......-++++++.+|+.++.....
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~------------ 108 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE------------ 108 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC------------
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC------------
Confidence 45689999999999999999999989999999999999999988621111579999999976321111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
...||+|+++.. ++.....-.+..+....+++.+.+.|+|||.|++.. ........+
T Consensus 109 -------------------~~~~D~i~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~ 165 (214)
T 1yzh_A 109 -------------------DGEIDRLYLNFS--DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT--DNRGLFEYS 165 (214)
T ss_dssp -------------------TTCCSEEEEESC--CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE--SCHHHHHHH
T ss_pred -------------------CCCCCEEEEECC--CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe--CCHHHHHHH
Confidence 256999999642 211000001122456899999999999999999864 334444555
Q ss_pred HHHHHHh
Q 004164 701 ISRMKMV 707 (771)
Q Consensus 701 ~~~l~~v 707 (771)
++.+.+.
T Consensus 166 ~~~~~~~ 172 (214)
T 1yzh_A 166 LVSFSQY 172 (214)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 5555543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-08 Score=102.91 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=94.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..|...+|..++++||+++.+++.|++...-..-++++++.+|+.++.....
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~------------ 105 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE------------ 105 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC------------
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC------------
Confidence 45689999999999999999999999999999999999999987621112469999999988432222
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
...||.|++....+.... .-....+....+++.+.+.|+|||.|++-. ........+
T Consensus 106 -------------------~~~~d~v~~~~~~p~~~~--~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t--d~~~~~~~~ 162 (213)
T 2fca_A 106 -------------------PGEVKRVYLNFSDPWPKK--RHEKRRLTYSHFLKKYEEVMGKGGSIHFKT--DNRGLFEYS 162 (213)
T ss_dssp -------------------TTSCCEEEEESCCCCCSG--GGGGGSTTSHHHHHHHHHHHTTSCEEEEEE--SCHHHHHHH
T ss_pred -------------------cCCcCEEEEECCCCCcCc--cccccccCcHHHHHHHHHHcCCCCEEEEEe--CCHHHHHHH
Confidence 256999988542221100 000123557899999999999999999764 344445555
Q ss_pred HHHHHHh
Q 004164 701 ISRMKMV 707 (771)
Q Consensus 701 ~~~l~~v 707 (771)
+..+.+.
T Consensus 163 ~~~~~~~ 169 (213)
T 2fca_A 163 LKSFSEY 169 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 6666554
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-09 Score=116.62 Aligned_cols=123 Identities=17% Similarity=0.145 Sum_probs=93.0
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--CC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--FM 131 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--~~ 131 (771)
..+...+.. .++.+|||+|||+|..+..+++.+. ++|+++|+++.+++.++++....+.++.++++|+.+++ ++
T Consensus 236 ~~~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~ 312 (429)
T 1sqg_A 236 QGCMTWLAP---QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCG 312 (429)
T ss_dssp HTHHHHHCC---CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHT
T ss_pred HHHHHHcCC---CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcc
Confidence 344555543 6788999999999999999998743 69999999999999888877666667899999999876 56
Q ss_pred CCCccEEEec------cccccccCc------ccc---hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 132 DETFDVILDK------GGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 132 ~~sFDlVi~~------~~l~~l~~~------~~~---~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++||+|++. +++...++. ++- ......++.++.++|||||++++++.+
T Consensus 313 ~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 313 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 6789999963 233322210 000 011368899999999999999998865
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.5e-09 Score=107.99 Aligned_cols=117 Identities=15% Similarity=0.275 Sum_probs=87.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+.+||+||+|.|.++..+...+| ..+|++||+++.+++.|++++ |+ +++++++.+|+.+++........
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~~~~~~~~~~---- 133 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL--ENKIFLKLGSALETLQVLIDSKS---- 133 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHCSS----
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHHHHHHHHHhhcc----
Confidence 457899999999999999999987 679999999999999999997 44 45799999999998775431000
Q ss_pred ccccccccccCCCCCCCCCCCCCC--CceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASN--ARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~--~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
. +........ ..||+|++|.... .-..+|+.+.+.|+|||++++..+
T Consensus 134 -------------~-~~~~~~f~~~~~~fD~I~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 134 -------------A-PSWASDFAFGPSSIDLFFLDADKE-------------NYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp -------------C-CGGGTTTCCSTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred -------------c-ccccccccCCCCCcCEEEEeCCHH-------------HHHHHHHHHHHHcCCCeEEEEEcc
Confidence 0 000001112 5799999974211 115889999999999999998653
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-09 Score=117.49 Aligned_cols=114 Identities=18% Similarity=0.104 Sum_probs=87.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEeecCCCCC----CCCCccEEEec
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQF----MDETFDVILDK 141 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~--~i~~~~~D~~~l~~----~~~sFDlVi~~ 141 (771)
++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.+...+. +++++++|+.+... ..++||+|++.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 6789999999999999999998777999999999999988777655442 79999999977531 25789999985
Q ss_pred cccccccCcc--cchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 142 GGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 142 ~~l~~l~~~~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
.......... ........++.++.++|+|||++++++...
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 4332211100 001236788999999999999999988763
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.86 E-value=8.8e-09 Score=102.91 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=91.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|+|.++..+....|..+|++||+++.+++.|++.+ |+ ++++++.+|+.+.+..
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~---------- 105 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA---RNVTLVEAFAPEGLDD---------- 105 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC---TTEEEEECCTTTTCTT----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeCChhhhhhc----------
Confidence 3457899999999999999999998889999999999999999886 43 5799999998764322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
...||+|+++.... .-..+++.+.+.|+|||.+++..... ..
T Consensus 106 -----------------------~~~~D~i~~~~~~~-------------~~~~~l~~~~~~LkpgG~l~~~~~~~--~~ 147 (204)
T 3e05_A 106 -----------------------LPDPDRVFIGGSGG-------------MLEEIIDAVDRRLKSEGVIVLNAVTL--DT 147 (204)
T ss_dssp -----------------------SCCCSEEEESCCTT-------------CHHHHHHHHHHHCCTTCEEEEEECBH--HH
T ss_pred -----------------------CCCCCEEEECCCCc-------------CHHHHHHHHHHhcCCCeEEEEEeccc--cc
Confidence 14699999854221 23689999999999999999976543 23
Q ss_pred HHHHHHHHHHh
Q 004164 697 KDMVISRMKMV 707 (771)
Q Consensus 697 ~~~v~~~l~~v 707 (771)
...+...+++.
T Consensus 148 ~~~~~~~l~~~ 158 (204)
T 3e05_A 148 LTKAVEFLEDH 158 (204)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 34455666555
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.86 E-value=8e-09 Score=114.61 Aligned_cols=130 Identities=13% Similarity=0.048 Sum_probs=94.2
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC---CcEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS---DMRWR 121 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~---~i~~~ 121 (771)
.+|.........+..+ .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.+...+- +++++
T Consensus 203 gff~~~~~~~~~l~~~------~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~ 276 (396)
T 3c0k_A 203 GYYLDQRDSRLATRRY------VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV 276 (396)
T ss_dssp SSCGGGHHHHHHHHHH------CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CcCcCHHHHHHHHHHh------hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEE
Confidence 3454444444444444 25789999999999999999998877999999999999988777655443 78999
Q ss_pred EeecCCCCC----CCCCccEEEeccccccccCc--ccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 122 VMDMTSMQF----MDETFDVILDKGGLDALMEP--ELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 122 ~~D~~~l~~----~~~sFDlVi~~~~l~~l~~~--~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++|+.+... ..++||+|++.-........ .........++.++.++|+|||++++.+..
T Consensus 277 ~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999987521 14689999986433211100 000123678999999999999999998865
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.8e-09 Score=109.82 Aligned_cols=96 Identities=14% Similarity=0.200 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCCCCCCCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQFMDETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l~~~~~sFDlVi~~~ 142 (771)
.+.+|||||||+|.++..+++.+ .+|+++|+++.+++.+++.+.. ..++++++.+|+.+.. ++||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~ 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC
Confidence 45799999999999999998887 7999999999999877654422 2468999999998764 7899999752
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.++. .++++++++|+|||++++...
T Consensus 148 -----~dp~-------~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 148 -----EPDI-------HRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp -----CCCH-------HHHHHHHTTEEEEEEEEEEEE
T ss_pred -----CChH-------HHHHHHHHhcCCCcEEEEEcC
Confidence 2222 489999999999999998653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.9e-09 Score=124.37 Aligned_cols=129 Identities=17% Similarity=0.086 Sum_probs=95.7
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEE
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~ 122 (771)
+|......+..+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.+...+ .++++++
T Consensus 523 ~f~d~r~~r~~l~~~~------~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~ 596 (703)
T 3v97_A 523 LFLDHRIARRMLGQMS------KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQ 596 (703)
T ss_dssp CCGGGHHHHHHHHHHC------TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEE
T ss_pred CcccHHHHHHHHHHhc------CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEe
Confidence 5555555555555543 578999999999999999998888789999999999998877765544 3699999
Q ss_pred eecCCC-CCCCCCccEEEeccccccccCc----ccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 123 MDMTSM-QFMDETFDVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 123 ~D~~~l-~~~~~sFDlVi~~~~l~~l~~~----~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+.+. +...++||+|++......-... .........++..+.++|+|||++++.+..
T Consensus 597 ~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 597 ADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 999873 4456789999975433211100 011223778899999999999999987755
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=99.88 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=100.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|.|.++..+... ..++++||+++.+++.|++.+ ++ .+.+++++.+|..+.+.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 116 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNL-DNYDIRVVHSDLYENVK------------ 116 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTC-TTSCEEEEECSTTTTCT------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCC-CccceEEEECchhcccc------------
Confidence 4568999999999999988887 569999999999999999987 33 12269999999876421
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
..+||+|+++. .-. ...-....+++.+.+.|+|||.+++...... ..
T Consensus 117 ----------------------~~~~D~v~~~~--~~~-------~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~ 163 (194)
T 1dus_A 117 ----------------------DRKYNKIITNP--PIR-------AGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ--GA 163 (194)
T ss_dssp ----------------------TSCEEEEEECC--CST-------TCHHHHHHHHHHHHHHEEEEEEEEEEEESTH--HH
T ss_pred ----------------------cCCceEEEECC--Ccc-------cchhHHHHHHHHHHHHcCCCCEEEEEECCCC--Ch
Confidence 25799999842 100 0001236899999999999999999876553 23
Q ss_pred HHHHHHHHHhccceEEeeecCCccEEEEEe
Q 004164 698 DMVISRMKMVFNHLFCLQLEEDVNLVLFGL 727 (771)
Q Consensus 698 ~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~ 727 (771)
..+...+++.|..+..+... ....+++|.
T Consensus 164 ~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 192 (194)
T 1dus_A 164 KSLAKYMKDVFGNVETVTIK-GGYRVLKSK 192 (194)
T ss_dssp HHHHHHHHHHHSCCEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHhcceEEEecC-CcEEEEEEe
Confidence 45778888889877665533 344555554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=97.99 Aligned_cols=124 Identities=11% Similarity=0.046 Sum_probs=90.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++..+...+|..+|++||+++.+++.|++.+.-. ..+++ ++.+|+.+.+...
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~----------- 91 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV----------- 91 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC-----------
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc-----------
Confidence 3456899999999999999999988889999999999999999886221 23478 8889986643331
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHH
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 698 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 698 (771)
...||+|+++..- ....+++.+.+.|+|||.+++...... ...
T Consensus 92 ---------------------~~~~D~i~~~~~~--------------~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~ 134 (178)
T 3hm2_A 92 ---------------------PDNPDVIFIGGGL--------------TAPGVFAAAWKRLPVGGRLVANAVTVE--SEQ 134 (178)
T ss_dssp ---------------------CSCCSEEEECC-T--------------TCTTHHHHHHHTCCTTCEEEEEECSHH--HHH
T ss_pred ---------------------CCCCCEEEECCcc--------------cHHHHHHHHHHhcCCCCEEEEEeeccc--cHH
Confidence 1579999973211 017899999999999999998875442 223
Q ss_pred HHHHHHHHhccceE
Q 004164 699 MVISRMKMVFNHLF 712 (771)
Q Consensus 699 ~v~~~l~~vF~~v~ 712 (771)
.+...+++...++.
T Consensus 135 ~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 135 MLWALRKQFGGTIS 148 (178)
T ss_dssp HHHHHHHHHCCEEE
T ss_pred HHHHHHHHcCCeeE
Confidence 44555555544333
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=9.7e-09 Score=105.22 Aligned_cols=108 Identities=11% Similarity=-0.002 Sum_probs=81.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..|....+ .+|++||+++.+++.|++.+.- ...+++++.+|+.+.+....
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~------------ 125 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-QTHKVIPLKGLWEDVAPTLP------------ 125 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGG-CSSEEEEEESCHHHHGGGSC------------
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHh-cCCCeEEEecCHHHhhcccC------------
Confidence 457899999999999999866543 4899999999999999998743 23679999999998754432
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-cHHHHHHHHHccCCCcEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-~~~fl~~~~~~L~~~Gilv~ 687 (771)
+..||+|++|.+.. . .+..+.- -..+++.+++.|+|||+|++
T Consensus 126 -------------------~~~fD~V~~d~~~~-~-----~~~~~~~~~~~~l~~~~r~LkpgG~l~~ 168 (236)
T 1zx0_A 126 -------------------DGHFDGILYDTYPL-S-----EETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp -------------------TTCEEEEEECCCCC-B-----GGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred -------------------CCceEEEEECCccc-c-----hhhhhhhhHHHHHHHHHHhcCCCeEEEE
Confidence 36799999974432 1 1111111 13679999999999999985
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-08 Score=99.94 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=84.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..+... +..+|++||+|+.+++.|++.+....-++++++.+|+.++.....
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~------------ 110 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT------------ 110 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc------------
Confidence 4578999999999998876664 456899999999999999998722111579999999999976543
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc---ccHHHHHHHHH--ccCCCcEEEEEeccCC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF---VEGSFLLTVKD--ALSEQGLFIVNLVSRS 693 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f---~~~~fl~~~~~--~L~~~Gilv~Nl~~~~ 693 (771)
..+||+|++|. |-.. .-..+++.+.+ .|+|||++++....+.
T Consensus 111 -------------------~~~fD~i~~~~------------p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 111 -------------------TSPVDLVLADP------------PYNVDSADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp -------------------SSCCSEEEECC------------CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred -------------------CCCccEEEECC------------CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 26799999953 1111 23678899988 9999999999875543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-08 Score=111.15 Aligned_cols=99 Identities=9% Similarity=0.081 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|.++.. +. +..+|+++|+|+.+++.+++.+...+ .+++++++|+.+.. ++||+|++.....
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPKF 269 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTTT
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcHh
Confidence 678999999999999999 77 56699999999999998877765544 47999999998865 7899999753221
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
...++..+.++|+|||.+++.++...
T Consensus 270 -----------~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 270 -----------AHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp -----------GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred -----------HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 12678999999999999999887653
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-09 Score=113.53 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC-CCC-CCCCccEEEeccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS-MQF-MDETFDVILDKGG 143 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~-l~~-~~~sFDlVi~~~~ 143 (771)
++.+|||+| |+|.++..++..+. .+|+++|+|+.+++.+++.....+ .+++++++|+.+ ++. .+++||+|++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 578999999 99999999988865 699999999999998877765433 379999999998 663 3578999998765
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++... ...++.++.++|+|||++++.+
T Consensus 251 ~~~~~--------~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 251 ETLEA--------IRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp SSHHH--------HHHHHHHHHHTBCSTTCEEEEE
T ss_pred CchHH--------HHHHHHHHHHHcccCCeEEEEE
Confidence 44321 4689999999999999553333
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.6e-09 Score=115.61 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=82.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.++ ..++++++.+|+.+ +++ +||+|++..++|+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLT-----GNENLNFVGGDMFK-SIP--SADAVLLKWVLHD 263 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCC-----CCSSEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcc-----cCCCcEEEeCccCC-CCC--CceEEEEcccccC
Confidence 45799999999999999999873 348999999 67775442 23569999999988 665 4999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHcccc---CeEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKS---GGKFVCLTLA 180 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkp---GG~~ii~~~~ 180 (771)
+.+++ ..++|++++++|+| ||++++.+..
T Consensus 264 ~~d~~-----~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 264 WNDEQ-----SLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp SCHHH-----HHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred CCHHH-----HHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 86544 56999999999999 9999998865
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.5e-09 Score=106.19 Aligned_cols=147 Identities=16% Similarity=0.106 Sum_probs=107.2
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeec
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~ 125 (771)
...+..+...+...+. +..+|||||||.|-++..++.. +..+|+++|+++.+++.+++.+...+.+.++.+.|.
T Consensus 116 Lp~lD~fY~~i~~~i~-----~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~ 190 (281)
T 3lcv_B 116 LPHLDEFYRELFRHLP-----RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADL 190 (281)
T ss_dssp GGGHHHHHHHHGGGSC-----CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred hHhHHHHHHHHHhccC-----CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeee
Confidence 3344444444555552 4679999999999999988877 567999999999999988887777777889999998
Q ss_pred CCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc-----Ccchhhcchhhh----h-ccC
Q 004164 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL-----AESHVLGLLFPK----F-RFG 195 (771)
Q Consensus 126 ~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~-----~~~~~~~~l~~~----~-~~~ 195 (771)
..-+ +.+.||+|++.-+++++.+...+ ..+ ++...|+++|.+|-..- -.+.+.+..... . ..+
T Consensus 191 ~~~~-p~~~~DvaL~lkti~~Le~q~kg-----~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g 263 (281)
T 3lcv_B 191 LEDR-LDEPADVTLLLKTLPCLETQQRG-----SGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERS 263 (281)
T ss_dssp TTSC-CCSCCSEEEETTCHHHHHHHSTT-----HHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHT
T ss_pred cccC-CCCCcchHHHHHHHHHhhhhhhH-----HHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcC
Confidence 8765 45889999999999998765532 556 89999999999887654 122333222222 2 248
Q ss_pred cEEEEeecCC
Q 004164 196 WKMSVHAIPQ 205 (771)
Q Consensus 196 w~~~~~~i~~ 205 (771)
|.+.-..+++
T Consensus 264 ~~~~~~~~~n 273 (281)
T 3lcv_B 264 CRIQRLEIGN 273 (281)
T ss_dssp CCEEEEEETT
T ss_pred CceeeeeecC
Confidence 8776666654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=105.46 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=98.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..+....+. +|++||+++.+++.|++.+.. ...++++++.+|..++.....
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~----------- 116 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIP----------- 116 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSC-----------
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhc-----------
Confidence 4678999999999999999988765 999999999999999998732 124689999999988754322
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCC-CCCCCCCCcCCcC---------cccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDS-PDSSSGMTCPAAD---------FVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s-~d~~~g~s~pp~~---------f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|++|.-- .....+..+|... ..-..+++.+.+.|+|||.|++-.
T Consensus 117 --------------------~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 117 --------------------KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp --------------------TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------------cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 3679999995311 0001122222111 112579999999999999999833
Q ss_pred ccCChhHHHHHHHHHHHh-ccce--EEee--ecCCccEEEEEec
Q 004164 690 VSRSQATKDMVISRMKMV-FNHL--FCLQ--LEEDVNLVLFGLS 728 (771)
Q Consensus 690 ~~~~~~~~~~v~~~l~~v-F~~v--~~~~--~~~~~N~Vl~a~~ 728 (771)
+... ...++..+++. |.-. ..+. .....+.+++...
T Consensus 177 --~~~~-~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 217 (259)
T 3lpm_A 177 --RPER-LLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGI 217 (259)
T ss_dssp --CTTT-HHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEE
T ss_pred --cHHH-HHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEE
Confidence 2222 33456666653 3321 1111 2345667766543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-08 Score=104.12 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=94.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||++|+|+|.++..+... .|..+|++||+++.+++.|++.+ |+ .++++++.+|+.+. ..
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---~~------- 159 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF--DDRVTIKLKDIYEG---IE------- 159 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC--TTTEEEECSCGGGC---CC-------
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC--CCceEEEECchhhc---cC-------
Confidence 45578999999999999999888 67889999999999999999987 54 46799999998753 11
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
...||+|++|.... ..+++.+.+.|+|||.+++...+ ..
T Consensus 160 ------------------------~~~~D~v~~~~~~~---------------~~~l~~~~~~L~~gG~l~~~~~~--~~ 198 (255)
T 3mb5_A 160 ------------------------EENVDHVILDLPQP---------------ERVVEHAAKALKPGGFFVAYTPC--SN 198 (255)
T ss_dssp ------------------------CCSEEEEEECSSCG---------------GGGHHHHHHHEEEEEEEEEEESS--HH
T ss_pred ------------------------CCCcCEEEECCCCH---------------HHHHHHHHHHcCCCCEEEEEECC--HH
Confidence 25699999954211 56899999999999999987643 33
Q ss_pred HHHHHHHHHHHh---ccceEEe
Q 004164 696 TKDMVISRMKMV---FNHLFCL 714 (771)
Q Consensus 696 ~~~~v~~~l~~v---F~~v~~~ 714 (771)
....+...+++. |..+-.+
T Consensus 199 ~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 199 QVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp HHHHHHHHHHHTGGGBSCCEEE
T ss_pred HHHHHHHHHHHcCCCccccEEE
Confidence 345567777766 7655443
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-08 Score=114.74 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC-CCCCccEEEec--
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF-MDETFDVILDK-- 141 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~-~~~sFDlVi~~-- 141 (771)
++.+|||+|||+|..+..+++. +.+.|+++|+|+.+++.++++....+ .++.++++|+.+++. .+++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 7889999999999999999986 23689999999999998877765444 479999999988753 45789999973
Q ss_pred ----cccccccCcccc---------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 142 ----GGLDALMEPELG---------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 142 ----~~l~~l~~~~~~---------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++...++.... ......+|.++.++|||||++++++.+
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 233222111000 012468899999999999999998875
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.6e-09 Score=117.51 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=90.1
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-CCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-FMD 132 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-~~~ 132 (771)
.+...+.. .++.+|||+|||+|..+..++.. +.+.|+++|+|+.+++.++++....+..+.++++|+.+++ +.+
T Consensus 92 l~a~~L~~---~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~ 168 (464)
T 3m6w_A 92 AVGVLLDP---KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFG 168 (464)
T ss_dssp HHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHC
T ss_pred HHHHhcCc---CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhcc
Confidence 34455543 57899999999999999999976 3358999999999999888776554434899999988875 346
Q ss_pred CCccEEEec------cccccccCccc-----c----hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 133 ETFDVILDK------GGLDALMEPEL-----G----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 133 ~sFDlVi~~------~~l~~l~~~~~-----~----~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++||+|++. +++..-++... . ......++.++.++|||||+++.++.+
T Consensus 169 ~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 169 TYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp SCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred ccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 899999952 22322111100 0 012478999999999999999998865
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.6e-08 Score=102.30 Aligned_cols=106 Identities=9% Similarity=0.152 Sum_probs=79.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|+|.++..|.+.+ |+.+|++||++|.|++.|++.+. .....+++++.+|..++ .
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~----~-------- 136 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----A-------- 136 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC----C--------
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc----c--------
Confidence 345789999999999999888876 45799999999999999999862 22356899999997653 2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
...||+|++-. . ..- .|++. -..+|+.+++.|+|||+|++-
T Consensus 137 -----------------------~~~~d~v~~~~--~--l~~--~~~~~--~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 137 -----------------------IENASMVVLNF--T--LQF--LEPSE--RQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp -----------------------CCSEEEEEEES--C--GGG--SCHHH--HHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------------------ccccccceeee--e--eee--cCchh--HhHHHHHHHHHcCCCcEEEEE
Confidence 24599998721 1 000 01111 146899999999999999974
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=103.87 Aligned_cols=119 Identities=12% Similarity=0.152 Sum_probs=88.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.++..|....|..+|++||+++.+++.|++.+ |+ ++++++.+|+.++.....
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~--------- 137 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKD--------- 137 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTT---------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEeccHHHhccccc---------
Confidence 456899999999999888888888889999999999999999875 54 359999999987631100
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
...+||+|+++... --..+++.+.+.|+|||.|++-.........
T Consensus 138 ---------------------~~~~fD~V~~~~~~--------------~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~ 182 (240)
T 1xdz_A 138 ---------------------VRESYDIVTARAVA--------------RLSVLSELCLPLVKKNGLFVALKAASAEEEL 182 (240)
T ss_dssp ---------------------TTTCEEEEEEECCS--------------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHH
T ss_pred ---------------------ccCCccEEEEeccC--------------CHHHHHHHHHHhcCCCCEEEEEeCCCchHHH
Confidence 02579999986521 0278999999999999999985433333333
Q ss_pred HHHHHHHHH
Q 004164 698 DMVISRMKM 706 (771)
Q Consensus 698 ~~v~~~l~~ 706 (771)
..+...+++
T Consensus 183 ~~~~~~l~~ 191 (240)
T 1xdz_A 183 NAGKKAITT 191 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444455544
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=107.79 Aligned_cols=89 Identities=20% Similarity=0.299 Sum_probs=68.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~ 129 (771)
+.+...+.+.+.. .++.+|||+|||+|.++..|++.+. +|+++|+++.+++.++++....+ ++++++++|+.+++
T Consensus 28 ~~i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 28 PGILDKIIYAAKI---KSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV 103 (299)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC
Confidence 4555666666654 5778999999999999999998865 99999999999998887764333 68999999999887
Q ss_pred CCCCCccEEEeccccc
Q 004164 130 FMDETFDVILDKGGLD 145 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~ 145 (771)
++ +||+|+++...+
T Consensus 104 ~~--~~D~Vv~n~py~ 117 (299)
T 2h1r_A 104 FP--KFDVCTANIPYK 117 (299)
T ss_dssp CC--CCSEEEEECCGG
T ss_pred cc--cCCEEEEcCCcc
Confidence 54 899999875544
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-08 Score=101.70 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=91.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC------CCCCCCeeEEEcchHHHHHhhccCCcc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG------FTQDKSLKVHITDGIKFVREMKSSSAT 613 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg------~~~~~r~~v~i~Dg~~~l~~~~~~~~~ 613 (771)
....+||+||+|+|.++..|...+|...|++||+++.+++.|++... .....+++++.+|+.+++...-
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~----- 119 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF----- 119 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC-----
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC-----
Confidence 34578999999999999999999999999999999999999986531 0112579999999987655321
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 614 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
....||.|++....+.... .-.-..+....+|+.+.+.|+|||.|++.. ..
T Consensus 120 -------------------------~~~~~D~v~~~~~dp~~k~--~h~krr~~~~~~l~~~~~~LkpGG~l~~~t--d~ 170 (235)
T 3ckk_A 120 -------------------------YKGQLTKMFFLFPDPHFKR--TKHKWRIISPTLLAEYAYVLRVGGLVYTIT--DV 170 (235)
T ss_dssp -------------------------CTTCEEEEEEESCC-------------CCCHHHHHHHHHHEEEEEEEEEEE--SC
T ss_pred -------------------------CCcCeeEEEEeCCCchhhh--hhhhhhhhhHHHHHHHHHHCCCCCEEEEEe--CC
Confidence 1357999988432211000 000123556899999999999999999764 34
Q ss_pred hhHHHHHHHHHHH
Q 004164 694 QATKDMVISRMKM 706 (771)
Q Consensus 694 ~~~~~~v~~~l~~ 706 (771)
..+...+++.+.+
T Consensus 171 ~~~~~~~~~~l~~ 183 (235)
T 3ckk_A 171 LELHDWMCTHFEE 183 (235)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4444444555544
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=98.14 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=84.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||++|+|+|.++..+... +..+|++||+++.+++.|++.+... ..++++++.+|+.+++....
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----------- 98 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT----------- 98 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC-----------
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc-----------
Confidence 4578999999999998888877 5569999999999999999987322 13579999999999876533
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc-CcccHHHHHHHH--HccCCCcEEEEEeccCC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA-DFVEGSFLLTVK--DALSEQGLFIVNLVSRS 693 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~-~f~~~~fl~~~~--~~L~~~Gilv~Nl~~~~ 693 (771)
..||+|++|. |- .....++++.+. +.|+|||++++......
T Consensus 99 ---------------------~~fD~i~~~~------------~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 99 ---------------------GRFDLVFLDP------------PYAKETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp ---------------------SCEEEEEECC------------SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred ---------------------CCCCEEEECC------------CCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 4599999852 11 112367788887 88999999999876554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.76 E-value=8.3e-08 Score=108.07 Aligned_cols=175 Identities=13% Similarity=0.106 Sum_probs=112.7
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--------------CCCeEEEEcCCHHHHHHHHHHhh
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------------GFHGITNVDFSKVVISDMLRRNV 112 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--------------g~~~V~~vDiS~~~i~~~~~~~~ 112 (771)
|.....+...+.+++.. .++.+|||+|||+|.+...+++. ...+++|+|+++.+++.++..+.
T Consensus 153 fyTP~~v~~~mv~~l~~---~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 153 YFTPRPLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp GCCCHHHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHhCC---CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 33455677788888764 56789999999999999888764 12479999999999987766554
Q ss_pred cCCC---CcEEEEeecCCCCCCCCCccEEEeccccccccCcccc----------hHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 113 RDRS---DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELG----------HKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 113 ~~~~---~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~----------~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..+. +..+.++|....+.. .+||+|+++-.+......... ......++..+.++|+|||+++++..
T Consensus 230 l~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 3332 678999999887644 489999998766653322100 01124789999999999999988874
Q ss_pred Cc----chhhcchhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEEcCC
Q 004164 180 AE----SHVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (771)
Q Consensus 180 ~~----~~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (771)
.. ......+.... ...+...+..++...=.....+..+++++|.+.
T Consensus 309 ~~~L~~~~~~~~iR~~L~~~~~l~~ii~lp~~~F~~t~v~t~Il~~~k~~~ 359 (445)
T 2okc_A 309 DNVLFEAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP 359 (445)
T ss_dssp HHHHHCSTHHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred CcccccCcHHHHHHHHHHhcCcEEEEEeCCCCCccCCCCCEEEEEEECCCC
Confidence 31 11111122222 122223344444321122356667777777654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.75 E-value=5.3e-08 Score=102.39 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=99.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||++|+|.|..+..|...+++ .+|++||+++.+++.|++.+ |+ ++++++.+|+.++......
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~~~------- 152 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV---LNTIIINADMRKYKDYLLK------- 152 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCHHHHHHHHHH-------
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC---CcEEEEeCChHhcchhhhh-------
Confidence 4568999999999999999998776 79999999999999999886 44 3799999999988653210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC----------cCcccHHHHHHHHHccCCCcEEE
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA----------ADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp----------~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
....||+|++|+-.+. .|+.-.. ..-....+|+.+.+.|+|||.++
T Consensus 153 ----------------------~~~~fD~Vl~d~Pcs~--~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 208 (274)
T 3ajd_A 153 ----------------------NEIFFDKILLDAPCSG--NIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELV 208 (274)
T ss_dssp ----------------------TTCCEEEEEEEECCC--------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------------ccccCCEEEEcCCCCC--CcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 0256999999863321 1111000 00134789999999999999999
Q ss_pred EEeccCChhHHHHHHHHHHHhccce
Q 004164 687 VNLVSRSQATKDMVISRMKMVFNHL 711 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~vF~~v 711 (771)
+...+..++..+.++..+.+.++..
T Consensus 209 ~stcs~~~~ene~~v~~~l~~~~~~ 233 (274)
T 3ajd_A 209 YSTCSMEVEENEEVIKYILQKRNDV 233 (274)
T ss_dssp EEESCCCTTSSHHHHHHHHHHCSSE
T ss_pred EEECCCChHHhHHHHHHHHHhCCCc
Confidence 9887766555566677666555543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.9e-08 Score=99.20 Aligned_cols=156 Identities=11% Similarity=0.118 Sum_probs=99.7
Q ss_pred CCCCcEEEEecc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+| +|.++..+.... ..+|++||+|+.+++.|++.+....- +++++.+|+..+ ...
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~-~~~----------- 119 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGII-KGV----------- 119 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSS-TTT-----------
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhh-hhc-----------
Confidence 356799999999 999999888875 56999999999999999988732111 799999997422 111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCC-CCCCCCCcCC--------cCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSP-DSSSGMTCPA--------ADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~-d~~~g~s~pp--------~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...+||+|+++.--. .......-|. ..-.-..+++.+.+.|+|||.|++.+
T Consensus 120 --------------------~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 120 --------------------VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp --------------------CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --------------------ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 136799999863110 0000000000 00012789999999999999999876
Q ss_pred ccCChhHHHHHHHHHHHhccceEEeeec--CCccEEEEEecCC
Q 004164 690 VSRSQATKDMVISRMKMVFNHLFCLQLE--EDVNLVLFGLSSE 730 (771)
Q Consensus 690 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~--~~~N~Vl~a~~~~ 730 (771)
..+ ......+.+.+++..-.+..++.. .....++.-.+.+
T Consensus 180 ~~~-~~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~~~ 221 (230)
T 3evz_A 180 PDK-EKLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKGI 221 (230)
T ss_dssp ESC-HHHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEECCC
T ss_pred ccc-HhHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEeccc
Confidence 443 344456677777764455444443 3344454444443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.74 E-value=4.7e-08 Score=100.88 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=91.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----------CCCCCCCeeEEEcchHHHHHhhcc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----------GFTQDKSLKVHITDGIKFVREMKS 609 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-----------g~~~~~r~~v~i~Dg~~~l~~~~~ 609 (771)
...+||+||+|+|.++..+....|...|++||+++.+++.|++.+ ++ ++++++.+|+.+++...-
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~---~nv~~~~~D~~~~l~~~~- 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF---QNINVLRGNAMKFLPNFF- 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT---TTEEEEECCTTSCGGGTS-
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC---CcEEEEeccHHHHHHHhc-
Confidence 457899999999999999999999889999999999999998865 33 469999999988665421
Q ss_pred CCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 610 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....+|.|++....+.... .-.-..++...+++.+.+.|+|||.|++..
T Consensus 125 -----------------------------~~~~~d~v~~~~p~p~~k~--~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 125 -----------------------------EKGQLSKMFFCFPDPHFKQ--RKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp -----------------------------CTTCEEEEEEESCCCC--------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------------------cccccCEEEEECCCccccc--chhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 1356899887542221100 000123456899999999999999999843
Q ss_pred ccCChhHHHHHHHHHHH
Q 004164 690 VSRSQATKDMVISRMKM 706 (771)
Q Consensus 690 ~~~~~~~~~~v~~~l~~ 706 (771)
....+.+.+...+..
T Consensus 174 --d~~~~~~~~~~~~~~ 188 (246)
T 2vdv_E 174 --DVKDLHEWMVKHLEE 188 (246)
T ss_dssp --SCHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHh
Confidence 344444444444433
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=112.36 Aligned_cols=112 Identities=15% Similarity=0.075 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC----CCCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF----MDETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~----~~~sFDlVi~~~ 142 (771)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++.+...+ .+++++++|+.+... .+++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 4679999999999999999988 5589999999999998877765544 459999999987531 257899999754
Q ss_pred ccccccCcc--cchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 143 GLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 143 ~l~~l~~~~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
......... ........++.++.++|+|||++++.+.+
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 332211100 00123678999999999999999998876
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.6e-08 Score=96.24 Aligned_cols=115 Identities=9% Similarity=0.011 Sum_probs=88.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|+|.++..+... ..+|++||+++.+++.|++.. |+ .++++++.+|+.+.+...
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~~~~~--------- 120 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGL--SPRMRAVQGTAPAALADL--------- 120 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCTTGGGTTS---------
T ss_pred CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCEEEEeCchhhhcccC---------
Confidence 34578999999999999988887 569999999999999999885 54 347999999998753321
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
..||+|+++. . + +.++++.+.+.|+|||.+++..... +.
T Consensus 121 ------------------------~~~D~v~~~~--~-----~--------~~~~l~~~~~~LkpgG~lv~~~~~~--~~ 159 (204)
T 3njr_A 121 ------------------------PLPEAVFIGG--G-----G--------SQALYDRLWEWLAPGTRIVANAVTL--ES 159 (204)
T ss_dssp ------------------------CCCSEEEECS--C-----C--------CHHHHHHHHHHSCTTCEEEEEECSH--HH
T ss_pred ------------------------CCCCEEEECC--c-----c--------cHHHHHHHHHhcCCCcEEEEEecCc--cc
Confidence 3599999853 1 1 1339999999999999999987543 33
Q ss_pred HHHHHHHHHHhc
Q 004164 697 KDMVISRMKMVF 708 (771)
Q Consensus 697 ~~~v~~~l~~vF 708 (771)
...+...+++.-
T Consensus 160 ~~~~~~~l~~~g 171 (204)
T 3njr_A 160 ETLLTQLHARHG 171 (204)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC
Confidence 344556666553
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=113.78 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=89.3
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FM 131 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~ 131 (771)
.+...+.. .++.+|||+|||+|..+..++.. +.+.|+++|+|+.+++.+++.....+ .++.+.+.|+.+++ ..
T Consensus 96 l~~~~L~~---~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~ 172 (456)
T 3m4x_A 96 IVGTAAAA---KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHF 172 (456)
T ss_dssp HHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHH
T ss_pred HHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhc
Confidence 34445543 57899999999999999999876 33689999999999998877665444 56899999988764 33
Q ss_pred CCCccEEEeccccc---ccc-Cccc-------c----hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 132 DETFDVILDKGGLD---ALM-EPEL-------G----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 132 ~~sFDlVi~~~~l~---~l~-~~~~-------~----~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++||+|++..... .+. +++. . ......++.++.++|||||+++.++.+
T Consensus 173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 57899999643211 111 1110 0 012458899999999999999998875
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.2e-09 Score=106.28 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=78.5
Q ss_pred CCcEEEEeccccHHHHHHHHh----CCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH--HHhhccCCcccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDE 615 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~----~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~--l~~~~~~~~~~~ 615 (771)
+.+||+||+|+|.++..|... .|..+|++||+++.+++.|+. + .++++++++|+.++ +....
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---~--~~~v~~~~gD~~~~~~l~~~~------- 149 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---D--MENITLHQGDCSDLTTFEHLR------- 149 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---G--CTTEEEEECCSSCSGGGGGGS-------
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---c--CCceEEEECcchhHHHHHhhc-------
Confidence 468999999999999988887 577899999999999999982 2 36899999999764 22211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHH-ccCCCcEEEEEe
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD-ALSEQGLFIVNL 689 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~-~L~~~Gilv~Nl 689 (771)
...||+|++|.... --..+|..+.+ .|+|||+|++.-
T Consensus 150 ------------------------~~~fD~I~~d~~~~-------------~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 150 ------------------------EMAHPLIFIDNAHA-------------NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp ------------------------SSCSSEEEEESSCS-------------SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred ------------------------cCCCCEEEECCchH-------------hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 23699999976421 12678999996 999999999853
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-08 Score=104.47 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=100.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-------CCC-----CcEEEEEcCH--------------HHHHHHHhhcC-------
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-------MPF-----VGIEAVELDL--------------TMLNLAEDYFG------- 586 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-------~p~-----~~i~~VEiD~--------------~v~~vA~~~Fg------- 586 (771)
..+.+||+||.|+|.....+... .|. .++++||.+| .+.++|++.+.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35679999999999665544332 563 5899999998 34445655432
Q ss_pred ------CC-CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC
Q 004164 587 ------FT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 659 (771)
Q Consensus 587 ------~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~ 659 (771)
+. ...+++++++|+.+.+..... .....||+|++|.+++..
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~----------------------------~~~~~~D~iflD~fsp~~---- 186 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDD----------------------------SLNQKVDAWFLDGFAPAK---- 186 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCG----------------------------GGTTCEEEEEECSSCTTT----
T ss_pred chhheeccCCceEEEEEECcHHHHHhhccc----------------------------ccCCeEEEEEECCCCccc----
Confidence 21 124688999999999877531 001379999999887632
Q ss_pred CcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHHHHHh-ccceEEeeecCCccEEEEEecCC
Q 004164 660 TCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 730 (771)
Q Consensus 660 s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~~~ 730 (771)
.+.+++.++|+.+.++|+|||+|+. ++.... +...|+++ |. +...+-...-..++.|.+..
T Consensus 187 ---~p~lw~~~~l~~l~~~L~pGG~l~t--ysaa~~----vrr~L~~aGF~-v~~~~g~~~kr~m~~a~~~~ 248 (257)
T 2qy6_A 187 ---NPDMWTQNLFNAMARLARPGGTLAT--FTSAGF----VRRGLQEAGFT-MQKRKGFGRKREMLCGVMEQ 248 (257)
T ss_dssp ---CGGGCCHHHHHHHHHHEEEEEEEEE--SCCBHH----HHHHHHHHTEE-EEEECCSTTCCCEEEEEEC-
T ss_pred ---ChhhcCHHHHHHHHHHcCCCcEEEE--EeCCHH----HHHHHHHCCCE-EEeCCCCCCCCceEEEEecC
Confidence 4589999999999999999999993 454443 44556666 54 44444333344667776554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-08 Score=99.21 Aligned_cols=118 Identities=9% Similarity=0.060 Sum_probs=84.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
...+||++|+|+|.++..+...+ |..+|++||+++.+++.|++.+... ..++++++.+|+.++....
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----------- 90 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI----------- 90 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC-----------
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc-----------
Confidence 45689999999999999888875 5669999999999999999987321 1468999999986653211
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCC-CCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDS-PDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s-~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+||+|++|..- +....... ...-....+++.+.+.|+|||.+++..+..
T Consensus 91 ---------------------~~~fD~v~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 91 ---------------------DCPVKAVMFNLGYLPSGDHSIS--TRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp ---------------------CSCEEEEEEEESBCTTSCTTCB--CCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred ---------------------cCCceEEEEcCCcccCcccccc--cCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 2679999997521 10000000 000012469999999999999999887543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-08 Score=105.70 Aligned_cols=91 Identities=10% Similarity=0.057 Sum_probs=76.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (771)
.+.+...+.+.+.. .++.+|||||||+|.++..|++.+. +|+++|+++.+++.++++.. ..++++++++|+.+++
T Consensus 35 d~~i~~~Iv~~l~~---~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~-~~~~v~vi~gD~l~~~ 109 (295)
T 3gru_A 35 DKNFVNKAVESANL---TKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKE-LYNNIEIIWGDALKVD 109 (295)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHH-HCSSEEEEESCTTTSC
T ss_pred CHHHHHHHHHhcCC---CCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhc-cCCCeEEEECchhhCC
Confidence 34566666676654 5788999999999999999999865 99999999999998877764 4578999999999998
Q ss_pred CCCCCccEEEeccccc
Q 004164 130 FMDETFDVILDKGGLD 145 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~ 145 (771)
+++.+||+|+++...+
T Consensus 110 ~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 110 LNKLDFNKVVANLPYQ 125 (295)
T ss_dssp GGGSCCSEEEEECCGG
T ss_pred cccCCccEEEEeCccc
Confidence 8888899999875544
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.72 E-value=7.9e-08 Score=104.02 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=92.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
+...+||++|+|+|.++..+.... .+|++||+++.+++.|++.+ ++ .+.+++++.+|+.+++.....
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl-~~~~v~~i~~D~~~~l~~~~~------- 221 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGL-EQAPIRWICEDAMKFIQREER------- 221 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTC-TTSCEEEECSCHHHHHHHHHH-------
T ss_pred CCCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCC-CccceEEEECcHHHHHHHHHh-------
Confidence 345689999999999999888864 39999999999999999987 44 222699999999999865420
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-----ccHHHHHHHHHccCCCcEEEEEecc
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
.+.+||+||+|.-.- +.+ +.... .-..+++.+.++|+|||+|++...+
T Consensus 222 ----------------------~~~~fD~Ii~dPP~~----~~~-~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 222 ----------------------RGSTYDIILTDPPKF----GRG-THGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ----------------------HTCCBSEEEECCCSE----EEC-TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ----------------------cCCCceEEEECCccc----cCC-chHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 025799999964210 000 00001 1257899999999999997765555
Q ss_pred CChhHHHHHHHHHHHhcc
Q 004164 692 RSQATKDMVISRMKMVFN 709 (771)
Q Consensus 692 ~~~~~~~~v~~~l~~vF~ 709 (771)
........+...+++.+.
T Consensus 275 ~~~~~~~~~~~~l~~a~~ 292 (332)
T 2igt_A 275 SIRASFYSMHELMRETMR 292 (332)
T ss_dssp CTTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 433223344555555554
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=107.30 Aligned_cols=133 Identities=13% Similarity=0.105 Sum_probs=103.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||++|+|.|..+..|...++. .+|++||+++.+++.|++.. |+ . +.++.+|+.++.....
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~---~-v~~~~~Da~~l~~~~~------- 168 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA---P-LAVTQAPPRALAEAFG------- 168 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC---C-CEEECSCHHHHHHHHC-------
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---e-EEEEECCHHHhhhhcc-------
Confidence 34578999999999999999998865 69999999999999999886 65 3 8999999998754332
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 681 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~ 681 (771)
..||+|++|+-.+. .|+....+.. +..++|+.+.+.|+|
T Consensus 169 -------------------------~~FD~Il~D~PcSg--~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp 221 (464)
T 3m6w_A 169 -------------------------TYFHRVLLDAPCSG--EGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP 221 (464)
T ss_dssp -------------------------SCEEEEEEECCCCC--GGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE
T ss_pred -------------------------ccCCEEEECCCcCC--ccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57999999984431 2222111221 127899999999999
Q ss_pred CcEEEEEeccCChhHHHHHHHHHHHhccc
Q 004164 682 QGLFIVNLVSRSQATKDMVISRMKMVFNH 710 (771)
Q Consensus 682 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 710 (771)
||.|++...+-..+..+.++..+.+-++.
T Consensus 222 GG~LvysTCs~~~eEne~vv~~~l~~~~~ 250 (464)
T 3m6w_A 222 GGVLVYSTCTFAPEENEGVVAHFLKAHPE 250 (464)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHCTT
T ss_pred CcEEEEEeccCchhcCHHHHHHHHHHCCC
Confidence 99999988877777777888888776654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.3e-08 Score=102.57 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=73.4
Q ss_pred CCCCeEEEEcC------CcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEE-EEeecCCCCCCCCCccE
Q 004164 67 SPPPQILVPGC------GNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRW-RVMDMTSMQFMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGC------G~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~-~~~D~~~l~~~~~sFDl 137 (771)
.++.+|||+|| |+|. ..+++. + ..+|+|+|+|+. . +++++ +++|+.+++++ ++||+
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v----~~v~~~i~gD~~~~~~~-~~fD~ 126 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V----SDADSTLIGDCATVHTA-NKWDL 126 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B----CSSSEEEESCGGGCCCS-SCEEE
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C----CCCEEEEECccccCCcc-CcccE
Confidence 57889999999 5576 333433 4 358999999996 1 36889 99999988765 78999
Q ss_pred EEeccccccc----cCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 138 ILDKGGLDAL----MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 138 Vi~~~~l~~l----~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
|++....... .+........+.+++++.++|||||+|++..+....
T Consensus 127 Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~ 176 (290)
T 2xyq_A 127 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 176 (290)
T ss_dssp EEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred EEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 9986542211 111111234678999999999999999998765433
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.1e-08 Score=101.94 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=88.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.++..|...+|..+|++||+++.+++.|++.. |+ .+++++.+|+.++.....
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l---~~v~~~~~d~~~~~~~~~--------- 147 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL---KGARALWGRAEVLAREAG--------- 147 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEECCHHHHTTSTT---------
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CceEEEECcHHHhhcccc---------
Confidence 457899999999999999999999999999999999999999876 55 349999999988732100
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
...+||+|+...... -..+++.+.+.|+|||.|++-.-....+..
T Consensus 148 ---------------------~~~~fD~I~s~a~~~--------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~ 192 (249)
T 3g89_A 148 ---------------------HREAYARAVARAVAP--------------LCVLSELLLPFLEVGGAAVAMKGPRVEEEL 192 (249)
T ss_dssp ---------------------TTTCEEEEEEESSCC--------------HHHHHHHHGGGEEEEEEEEEEECSCCHHHH
T ss_pred ---------------------cCCCceEEEECCcCC--------------HHHHHHHHHHHcCCCeEEEEEeCCCcHHHH
Confidence 125799999854321 168999999999999999874432233333
Q ss_pred HHHHHHHHH
Q 004164 698 DMVISRMKM 706 (771)
Q Consensus 698 ~~v~~~l~~ 706 (771)
..+...++.
T Consensus 193 ~~~~~~l~~ 201 (249)
T 3g89_A 193 APLPPALER 201 (249)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344433
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-07 Score=92.17 Aligned_cols=119 Identities=19% Similarity=0.243 Sum_probs=90.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||++|+|+|.++..+.... .+|++||+++.+++.|++.+.. ...++++++.+|..+.+...
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----------- 98 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI----------- 98 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-----------
Confidence 345789999999999999888877 6999999999999999997621 12367999999998854331
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHH
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 698 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 698 (771)
..||+|+++..- .. -..+++.+.+.|+|||.+++.... .....
T Consensus 99 ----------------------~~~D~v~~~~~~-----------~~--~~~~l~~~~~~l~~gG~l~~~~~~--~~~~~ 141 (192)
T 1l3i_A 99 ----------------------PDIDIAVVGGSG-----------GE--LQEILRIIKDKLKPGGRIIVTAIL--LETKF 141 (192)
T ss_dssp ----------------------CCEEEEEESCCT-----------TC--HHHHHHHHHHTEEEEEEEEEEECB--HHHHH
T ss_pred ----------------------CCCCEEEECCch-----------HH--HHHHHHHHHHhcCCCcEEEEEecC--cchHH
Confidence 369999984211 11 278999999999999999987654 33344
Q ss_pred HHHHHHHHh-c
Q 004164 699 MVISRMKMV-F 708 (771)
Q Consensus 699 ~v~~~l~~v-F 708 (771)
.+...+++. |
T Consensus 142 ~~~~~l~~~g~ 152 (192)
T 1l3i_A 142 EAMECLRDLGF 152 (192)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 566777665 6
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-07 Score=103.81 Aligned_cols=131 Identities=8% Similarity=0.118 Sum_probs=88.4
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC----C
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS----M 128 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~----l 128 (771)
...+.+++.. .++.+|||+|||+|.++..|++.+. +|+|+|+|+.+++.+++.+...+ .+++|+++|+.+ +
T Consensus 275 ~~~~~~~l~~---~~~~~VLDlgcG~G~~~~~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~ 350 (433)
T 1uwv_A 275 VARALEWLDV---QPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 350 (433)
T ss_dssp HHHHHHHHTC---CTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred HHHHHHhhcC---CCCCEEEECCCCCCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhh
Confidence 3344455543 4678999999999999999998854 99999999999998877665444 479999999987 3
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEE
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 200 (771)
++.+++||+|++.-.-.. ...++..+.+ ++|++.+++. .....+...+......+|.+..
T Consensus 351 ~~~~~~fD~Vv~dPPr~g----------~~~~~~~l~~-~~p~~ivyvs-c~p~tlard~~~l~~~Gy~~~~ 410 (433)
T 1uwv_A 351 PWAKNGFDKVLLDPARAG----------AAGVMQQIIK-LEPIRIVYVS-CNPATLARDSEALLKAGYTIAR 410 (433)
T ss_dssp GGGTTCCSEEEECCCTTC----------CHHHHHHHHH-HCCSEEEEEE-SCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhcCCCCEEEECCCCcc----------HHHHHHHHHh-cCCCeEEEEE-CChHHHHhhHHHHHHCCcEEEE
Confidence 456678999997432211 1234444443 6787766654 3333333333333334676654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-08 Score=98.95 Aligned_cols=113 Identities=11% Similarity=0.111 Sum_probs=79.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.++..|... ..+|++||++|.+++.|++.+ |+ ++++++.+|...+ ....
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~~~~~l-~~~~--------- 86 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGI---ENTELILDGHENL-DHYV--------- 86 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTC---CCEEEEESCGGGG-GGTC---------
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCcHHHH-Hhhc---------
Confidence 4578999999999999999887 569999999999999999987 44 5799998665442 1111
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCC-CCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSP-DSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~-d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
+.+||+|++++..- .....+.. ..-....+++.+.+.|+|||.|++-++..
T Consensus 87 ----------------------~~~fD~v~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 87 ----------------------REPIRAAIFNLGYLPSADKSVIT--KPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp ----------------------CSCEEEEEEEEC-------------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred ----------------------cCCcCEEEEeCCCCCCcchhccc--ChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 25799999874111 00000000 00112468899999999999999887654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.2e-08 Score=100.87 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=101.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.++..+...+|..+|++||+++.++++|++.+ |+ ++++++.+|..+.+.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~v~~~~~d~~~~~~------------ 173 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFSALA------------ 173 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTGGGT------------
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEEcchhhhcc------------
Confidence 346899999999999999999889899999999999999999887 44 369999999866421
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC-----CC--CcCCcCc--------ccHHHHHHHHHccCCC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS-----GM--TCPAADF--------VEGSFLLTVKDALSEQ 682 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~-----g~--s~pp~~f--------~~~~fl~~~~~~L~~~ 682 (771)
..+||+|+.+.--..... ++ .-|...+ .-..+++.+.+.|+||
T Consensus 174 ----------------------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg 231 (276)
T 2b3t_A 174 ----------------------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG 231 (276)
T ss_dssp ----------------------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred ----------------------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 246999999531100000 00 0122222 1367899999999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHh-ccceEEeeecCCccEEEEEe
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGL 727 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~ 727 (771)
|.+++.......+ .+.+.+++. |..+...+--.+...+++|.
T Consensus 232 G~l~~~~~~~~~~---~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 232 GFLLLEHGWQQGE---AVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp EEEEEECCSSCHH---HHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred CEEEEEECchHHH---HHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 9999876444333 344455444 76655555444566777764
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.1e-08 Score=95.26 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=83.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..+....+. |++||+|+.+++.|++.+....- +++++.+|+.+++.....
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~----------- 106 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKA----------- 106 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHH-----------
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhc-----------
Confidence 4578999999999999988887654 99999999999999998732111 799999999998765431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHH--HccCCCcEEEEEeccCC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK--DALSEQGLFIVNLVSRS 693 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~--~~L~~~Gilv~Nl~~~~ 693 (771)
...+||+|++|.--. -...++++.+. +.|+|||++++......
T Consensus 107 ------------------~~~~~D~i~~~~~~~------------~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 107 ------------------QGERFTVAFMAPPYA------------MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp ------------------TTCCEEEEEECCCTT------------SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred ------------------cCCceEEEEECCCCc------------hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 124799999953110 12256777787 99999999999876554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.1e-08 Score=107.35 Aligned_cols=123 Identities=22% Similarity=0.256 Sum_probs=90.1
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~ 123 (771)
.|.....+...+.+++.. .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.+ .++.++++
T Consensus 20 ~~~TP~~l~~~~~~~~~~---~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------~~~~~~~~ 88 (421)
T 2ih2_A 20 RVETPPEVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWAEGILA 88 (421)
T ss_dssp -CCCCHHHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTEEEEES
T ss_pred eEeCCHHHHHHHHHhhcc---CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------CCCcEEeC
Confidence 344456777778888753 35679999999999999999875 345999999999877644 57899999
Q ss_pred ecCCCCCCCCCccEEEeccccccccCc--------ccc--------------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALMEP--------ELG--------------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~~~--------~~~--------------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+.+... .++||+|+++-........ +.. .+....++..+.++|+|||+++++...
T Consensus 89 D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 89 DFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 9988653 4789999997444332210 100 012346799999999999999988754
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.67 E-value=8.7e-08 Score=95.81 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=81.1
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
+.+||+||+|+|.++..|... +..++++||+++.+++.|++.+.- ...++++++.+|..+. .
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~------------ 106 (219)
T 3dlc_A 44 AGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI----P------------ 106 (219)
T ss_dssp EEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC----S------------
T ss_pred CCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC----C------------
Confidence 349999999999999999988 777999999999999999998621 1246899999998542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-ccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....+||+|++.. . -..+ --..+|+.+++.|+|||.+++.....
T Consensus 107 -----------------~~~~~~D~v~~~~--~---------l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 107 -----------------IEDNYADLIVSRG--S---------VFFWEDVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp -----------------SCTTCEEEEEEES--C---------GGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred -----------------CCcccccEEEECc--h---------HhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 1136799999842 1 0111 12679999999999999999865433
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.9e-08 Score=97.42 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=81.3
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||+||+|+|.++..+...+|..++++||+++.+++.|++.+....-++++++.+|..++. .
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~------------- 129 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP---S------------- 129 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC---C-------------
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC---c-------------
Confidence 468999999999999999999888999999999999999998762211134999999986641 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
..+||+|+.... . --..+++.+++.|+|||.+++......
T Consensus 130 ------------------~~~~D~i~~~~~------------~--~~~~~l~~~~~~L~~gG~l~~~~~~~~ 169 (207)
T 1jsx_A 130 ------------------EPPFDGVISRAF------------A--SLNDMVSWCHHLPGEQGRFYALKGQMP 169 (207)
T ss_dssp ------------------CSCEEEEECSCS------------S--SHHHHHHHHTTSEEEEEEEEEEESSCC
T ss_pred ------------------cCCcCEEEEecc------------C--CHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 257999997321 0 026899999999999999998764433
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.7e-08 Score=97.91 Aligned_cols=106 Identities=22% Similarity=0.329 Sum_probs=83.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+.+||+||+|+|.++..+...+|..++++||+++.+++.|++.+.- ..+++++.+|+.++ .
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~----~----------- 105 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG--NLKVKYIEADYSKY----D----------- 105 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS--CTTEEEEESCTTTC----C-----------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc--CCCEEEEeCchhcc----C-----------
Confidence 456799999999999999999999989999999999999999999853 33899999998653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccH---HHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG---SFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~---~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
. ...||+|++.. . -..+-+. .+|+.+++.|+|||.+++.....
T Consensus 106 ------------------~-~~~fD~v~~~~--~---------l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 106 ------------------F-EEKYDMVVSAL--S---------IHHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp ------------------C-CSCEEEEEEES--C---------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ------------------C-CCCceEEEEeC--c---------cccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 1 15799999842 1 1222222 48999999999999999865443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=106.45 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..|++.+. +|+++|+|+.+++.+++.+...+..++|+++|+.++.. .+||+|++...-..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCCEEEEcCCccc
Confidence 3678999999999999999998865 99999999999998877665444339999999998743 28999997543211
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+ ...+++.+. .|+|||++++..
T Consensus 366 ~---------~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 L---------HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp S---------CHHHHHHHH-HHCCSEEEEEES
T ss_pred h---------HHHHHHHHH-hcCCCcEEEEEC
Confidence 1 123555554 599999887764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.9e-08 Score=105.36 Aligned_cols=143 Identities=14% Similarity=0.146 Sum_probs=99.3
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
..+||+||+|.|.++..+....|..+|++||+++.+++.|++.+ |+....+++++.+|+.+.+ .
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---~---------- 289 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---E---------- 289 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---C----------
T ss_pred CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---C----------
Confidence 37899999999999999999999999999999999999999987 4322336788999987631 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHH
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 698 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 698 (771)
..+||+|++|. +-.. +.. ...-...++++.+.+.|+|||.+++-. .+...+
T Consensus 290 ---------------------~~~fD~Ii~np--pfh~-~~~--~~~~~~~~~l~~~~~~LkpgG~l~iv~-n~~~~~-- 340 (375)
T 4dcm_A 290 ---------------------PFRFNAVLCNP--PFHQ-QHA--LTDNVAWEMFHHARRCLKINGELYIVA-NRHLDY-- 340 (375)
T ss_dssp ---------------------TTCEEEEEECC--CC----------CCHHHHHHHHHHHHEEEEEEEEEEE-ETTSCH--
T ss_pred ---------------------CCCeeEEEECC--Cccc-Ccc--cCHHHHHHHHHHHHHhCCCCcEEEEEE-ECCcCH--
Confidence 25799999953 1100 000 011123479999999999999999833 333332
Q ss_pred HHHHHHHHhccceEEeeecCCccEEEEEecC
Q 004164 699 MVISRMKMVFNHLFCLQLEEDVNLVLFGLSS 729 (771)
Q Consensus 699 ~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~ 729 (771)
-..+.+.|..+-.+. .+..-.|+-+...
T Consensus 341 --~~~l~~~fg~~~~~a-~~~~F~V~~~~~~ 368 (375)
T 4dcm_A 341 --FHKLKKIFGNCTTIA-TNNKFVVLKAVKL 368 (375)
T ss_dssp --HHHHHHHHSCCEEEE-ECSSEEEEEEECC
T ss_pred --HHHHHHhcCCEEEEe-eCCCEEEEEEcCc
Confidence 355777888766554 3334445555433
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-07 Score=95.65 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=97.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++.+|...+|..+|++||+++.+++.|++.... .+++.++.+|+.+......
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~------------ 139 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--RENIIPILGDANKPQEYAN------------ 139 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--CTTEEEEECCTTCGGGGTT------------
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc--CCCeEEEECCCCCcccccc------------
Confidence 45689999999999999999998767999999999999999988753 3689999999865211011
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC--Ch----
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--SQ---- 694 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~--~~---- 694 (771)
. ...||+|+.|+...+ ....+++.+.+.|+|||.+++-+..+ +.
T Consensus 140 -----------------~-~~~~D~v~~~~~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 189 (230)
T 1fbn_A 140 -----------------I-VEKVDVIYEDVAQPN------------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP 189 (230)
T ss_dssp -----------------T-SCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH
T ss_pred -----------------c-CccEEEEEEecCChh------------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCH
Confidence 1 146999997652211 23678999999999999999853211 11
Q ss_pred -hHHHHHHHHHHHh-ccceEEeeecC--CccEEEEEec
Q 004164 695 -ATKDMVISRMKMV-FNHLFCLQLEE--DVNLVLFGLS 728 (771)
Q Consensus 695 -~~~~~v~~~l~~v-F~~v~~~~~~~--~~N~Vl~a~~ 728 (771)
......+..|.+. |..+....+.. ..+.+++|.+
T Consensus 190 ~~~~~~~l~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 190 KEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred HHhhHHHHHHHHHCCCEEEEEEccCCCccceEEEEEEe
Confidence 1111223355554 65444444332 2355666654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.66 E-value=8.1e-08 Score=93.88 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=83.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||++|+|+|.++..+... +..+|++||+|+.+++.|++.+... ..++++++.+|+.+++.....
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------- 112 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---------- 112 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH----------
T ss_pred CCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh----------
Confidence 4568999999999998877764 5569999999999999999987321 135799999999998765420
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHH--HHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTV--KDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~--~~~L~~~Gilv~Nl~~~ 692 (771)
...+||+|++|.- - .......+++.+ .+.|+|||++++.....
T Consensus 113 -------------------~~~~fD~i~~~~~--~---------~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 113 -------------------EKLQFDLVLLDPP--Y---------AKQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp -------------------TTCCEEEEEECCC--G---------GGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred -------------------cCCCCCEEEECCC--C---------CchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 1257999998531 0 011236777777 78899999999876544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.7e-08 Score=98.58 Aligned_cols=120 Identities=19% Similarity=0.188 Sum_probs=89.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
....+||++|+|.|.++..+... .|..+|++||+++.+++.|++.+... ..++++++.+|+.+. ...
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~--------- 163 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELE--------- 163 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCC---------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCC---------
Confidence 34568999999999999988888 56789999999999999999987210 146899999998654 111
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
...||+|++|.... ..+++.+.+.|+|||.+++...+ ....
T Consensus 164 ----------------------~~~~D~v~~~~~~~---------------~~~l~~~~~~L~~gG~l~~~~~~--~~~~ 204 (258)
T 2pwy_A 164 ----------------------EAAYDGVALDLMEP---------------WKVLEKAALALKPDRFLVAYLPN--ITQV 204 (258)
T ss_dssp ----------------------TTCEEEEEEESSCG---------------GGGHHHHHHHEEEEEEEEEEESC--HHHH
T ss_pred ----------------------CCCcCEEEECCcCH---------------HHHHHHHHHhCCCCCEEEEEeCC--HHHH
Confidence 25799999964211 47899999999999999987643 3334
Q ss_pred HHHHHHHHHh-cc
Q 004164 698 DMVISRMKMV-FN 709 (771)
Q Consensus 698 ~~v~~~l~~v-F~ 709 (771)
..++..|++. |.
T Consensus 205 ~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 205 LELVRAAEAHPFR 217 (258)
T ss_dssp HHHHHHHTTTTEE
T ss_pred HHHHHHHHHCCCc
Confidence 4556666543 44
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-07 Score=94.33 Aligned_cols=144 Identities=13% Similarity=0.174 Sum_probs=102.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||.||+|+|.++..|.... |.-+|.+||++|.+++.|++... ..+++..+.+|....-. ..
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~--~~~ni~~V~~d~~~p~~-~~---------- 142 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--DRRNIFPILGDARFPEK-YR---------- 142 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST--TCTTEEEEESCTTCGGG-GT----------
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH--hhcCeeEEEEeccCccc-cc----------
Confidence 455789999999999999998864 67799999999999999988864 34578888888765311 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC-----
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS----- 693 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~----- 693 (771)
.....+|+|+.|+.-.+ ....++.++++.|+|||.+++-+..++
T Consensus 143 -------------------~~~~~vDvVf~d~~~~~------------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~ 191 (233)
T 4df3_A 143 -------------------HLVEGVDGLYADVAQPE------------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTT 191 (233)
T ss_dssp -------------------TTCCCEEEEEECCCCTT------------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHT
T ss_pred -------------------cccceEEEEEEeccCCh------------hHHHHHHHHHHhccCCCEEEEEEecccCCCCC
Confidence 12367999999764332 126789999999999999998764442
Q ss_pred --hhHHHHHHHHHHHh-ccceEEeeec--CCccEEEEEe
Q 004164 694 --QATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGL 727 (771)
Q Consensus 694 --~~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~ 727 (771)
.......++.|++. |.-+-.+.+. +..+.++||.
T Consensus 192 p~~~~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 192 EPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCCHHHHHHHHHHHHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred ChHHHHHHHHHHHHHCCCEEEEEEccCCCCCceEEEEEE
Confidence 23445567777665 7644444332 2346666764
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.1e-08 Score=103.15 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=89.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
....+||++|+|.|.++..+... .|..+|++||+++.+++.|++.+... ..++++++.+|+.+++ .
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~--------- 176 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---S--------- 176 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---C---------
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---c---------
Confidence 34568999999999999988887 67789999999999999999987322 1357999999986521 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
...||+|++|+... ..+|+.+.+.|+|||.+++..... ...
T Consensus 177 ----------------------~~~fD~Vi~~~~~~---------------~~~l~~~~~~LkpgG~l~i~~~~~--~~~ 217 (275)
T 1yb2_A 177 ----------------------DQMYDAVIADIPDP---------------WNHVQKIASMMKPGSVATFYLPNF--DQS 217 (275)
T ss_dssp ----------------------SCCEEEEEECCSCG---------------GGSHHHHHHTEEEEEEEEEEESSH--HHH
T ss_pred ----------------------CCCccEEEEcCcCH---------------HHHHHHHHHHcCCCCEEEEEeCCH--HHH
Confidence 25799999954211 478999999999999999876432 233
Q ss_pred HHHHHHHHHh-cc
Q 004164 698 DMVISRMKMV-FN 709 (771)
Q Consensus 698 ~~v~~~l~~v-F~ 709 (771)
..+...+++. |.
T Consensus 218 ~~~~~~l~~~Gf~ 230 (275)
T 1yb2_A 218 EKTVLSLSASGMH 230 (275)
T ss_dssp HHHHHHSGGGTEE
T ss_pred HHHHHHHHHCCCe
Confidence 4455555543 44
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-07 Score=96.00 Aligned_cols=143 Identities=15% Similarity=0.123 Sum_probs=95.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||++|+|+|.++..|...+ |..+|++||+++.+++.|++.... .++++++.+|+.+...-..
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~--~~~v~~~~~d~~~~~~~~~----------- 139 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPEEYRA----------- 139 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGGGGTT-----------
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--cCCCEEEEccCCCcchhhc-----------
Confidence 45689999999999999998875 557999999999999998887753 2689999999865311000
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC----h-
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS----Q- 694 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~----~- 694 (771)
....||+|++|.... -....+++.+.+.|+|||.+++-+.... .
T Consensus 140 -------------------~~~~~D~v~~~~~~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 188 (227)
T 1g8a_A 140 -------------------LVPKVDVIFEDVAQP------------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKE 188 (227)
T ss_dssp -------------------TCCCEEEEEECCCST------------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSC
T ss_pred -------------------ccCCceEEEECCCCH------------hHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCC
Confidence 024799999865311 0123569999999999999998642221 1
Q ss_pred --hHHHHHHHHHHHhccceEEeeecC--CccEEEEEe
Q 004164 695 --ATKDMVISRMKMVFNHLFCLQLEE--DVNLVLFGL 727 (771)
Q Consensus 695 --~~~~~v~~~l~~vF~~v~~~~~~~--~~N~Vl~a~ 727 (771)
......+..+.+.|..+....+.. ..+.++++.
T Consensus 189 ~~~~~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 189 PEQVFREVERELSEYFEVIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEECTTTSSSEEEEEEE
T ss_pred hhhhhHHHHHHHHhhceeeeEeccCcccCCCEEEEEE
Confidence 111223444455576655555432 234455554
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.64 E-value=5.9e-10 Score=115.39 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=82.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
..+...+.+.+.. .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++.. ..++++++++|+.++++
T Consensus 15 ~~~~~~i~~~~~~---~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~~~ 89 (245)
T 1yub_A 15 EKVLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQFQF 89 (245)
T ss_dssp TTTHHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTTTC
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhcCc
Confidence 3445556666653 577899999999999999999987 599999999999886655443 34579999999999887
Q ss_pred CC-CCccEEEeccccccccCcccchHHHH----------HHH----HHHHHccccCeEEEEEE
Q 004164 131 MD-ETFDVILDKGGLDALMEPELGHKLGN----------QYL----SEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 131 ~~-~sFDlVi~~~~l~~l~~~~~~~~~~~----------~~l----~~i~rvLkpGG~~ii~~ 178 (771)
++ ++| .|+++-..+. ... ... .++ +.+.|+|+|||.+.++.
T Consensus 90 ~~~~~f-~vv~n~Py~~-~~~-----~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 90 PNKQRY-KIVGNIPYHL-STQ-----IIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CCSSEE-EEEEECCSSS-CHH-----HHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred ccCCCc-EEEEeCCccc-cHH-----HHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 64 688 6665432221 100 011 223 66889999999876643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.1e-08 Score=99.11 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=82.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+.+||+||+|+|.++..+...+|..++++||+++.+++.|++.. ++++++++|+.++. .
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~---~----------- 92 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----PNTNFGKADLATWK---P----------- 92 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----TTSEEEECCTTTCC---C-----------
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----CCcEEEECChhhcC---c-----------
Confidence 3457899999999999999999888889999999999999999882 46899999976531 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
...||+|+... . ...+ + --..+|+.+++.|+|||.+++.....
T Consensus 93 --------------------~~~fD~v~~~~--~--l~~~--~----~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 93 --------------------AQKADLLYANA--V--FQWV--P----DHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp --------------------SSCEEEEEEES--C--GGGS--T----THHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred --------------------cCCcCEEEEeC--c--hhhC--C----CHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 35799999832 1 0001 0 12679999999999999999987644
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-08 Score=98.43 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=80.2
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC--CCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ--DKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~--~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+||++|+|+|.++..+.... ..+|++||+|+.+++.|++.+.... +++++++.+|+.+++....
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~----------- 121 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ----------- 121 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC-----------
T ss_pred CCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc-----------
Confidence 4689999999999988766553 2589999999999999999873211 1579999999998754321
Q ss_pred cccccccCCCCCCCCCCCCCCCc-eeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHH--HHccCCCcEEEEEeccCC
Q 004164 620 HGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSGMTCPAADFVEGSFLLTV--KDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~-yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~--~~~L~~~Gilv~Nl~~~~ 693 (771)
... ||+|++|.. . ..-...++++.+ .+.|+|||++++......
T Consensus 122 --------------------~~~~fD~I~~~~~---~--------~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 122 --------------------NQPHFDVVFLDPP---F--------HFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp --------------------SSCCEEEEEECCC---S--------SSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred --------------------cCCCCCEEEECCC---C--------CCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 257 999999532 0 001235778888 557999999998775544
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-07 Score=95.70 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=79.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-----CCCeeEEEcchHHHHHhhccCCcccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-----~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
.+.+||+||+|+|.++..|....+..++++||+++.+++.|++.+.... ..+++++.+|... ..
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~------- 97 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY----QD------- 97 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS----CC-------
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc----cc-------
Confidence 4579999999999999999998887899999999999999999874221 1379999999621 11
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEEe
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....+||+|++.- . -..+-. ..+|+.+++.|+|||++++..
T Consensus 98 ----------------------~~~~~fD~v~~~~--~---------l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 98 ----------------------KRFHGYDAATVIE--V---------IEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp ----------------------GGGCSCSEEEEES--C---------GGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ----------------------ccCCCcCEEeeHH--H---------HHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 0125799999721 1 111221 579999999999999888654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=101.16 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=95.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||++|+|.|..+..|...++ ..+|++||+++.+++.|++.+ |+ ++++++.+|+.++.. .
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~~~-~-------- 184 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHIGE-L-------- 184 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGGGG-G--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CeEEEEECChhhccc-c--------
Confidence 3456899999999999999998875 479999999999999999987 55 359999999987522 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 681 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~ 681 (771)
...||+|++|+-.+. .|+.-..+.. ....+|+.+.+.|+|
T Consensus 185 ------------------------~~~fD~Il~d~Pcsg--~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp 238 (315)
T 1ixk_A 185 ------------------------NVEFDKILLDAPCTG--SGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP 238 (315)
T ss_dssp ------------------------CCCEEEEEEECCTTS--TTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred ------------------------cccCCEEEEeCCCCC--cccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 246999999874321 1221111111 125899999999999
Q ss_pred CcEEEEEeccCChhHHHHHHHHHHHhcc
Q 004164 682 QGLFIVNLVSRSQATKDMVISRMKMVFN 709 (771)
Q Consensus 682 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 709 (771)
||.|++...+..+...+.++..+.+-+.
T Consensus 239 GG~lv~stcs~~~~Ene~~v~~~l~~~~ 266 (315)
T 1ixk_A 239 GGILVYSTCSLEPEENEFVIQWALDNFD 266 (315)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred CCEEEEEeCCCChHHhHHHHHHHHhcCC
Confidence 9999998766666655666666544443
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=101.16 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=84.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|.++..+...++ .+|++||+++.+++.|++.+ |+ .++++++.+|..++ .
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----~-------- 135 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWEEF----D-------- 135 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCC--SSCEEEEECCGGGC----C--------
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECCHHHc----C--------
Confidence 3456899999999999999998876 69999999999999999987 43 45899999999764 2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC---cCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA---ADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp---~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
..||+|+... ....+..|. ..-.-..+|+.+.+.|+|||.+++..+...
T Consensus 136 ------------------------~~fD~v~~~~----~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 136 ------------------------EPVDRIVSLG----AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp ------------------------CCCSEEEEES----CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred ------------------------CCccEEEEcc----hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 5699999731 101111010 001126899999999999999999887654
Q ss_pred h
Q 004164 694 Q 694 (771)
Q Consensus 694 ~ 694 (771)
.
T Consensus 188 ~ 188 (302)
T 3hem_A 188 D 188 (302)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-07 Score=105.36 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=101.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||++|+|.|..+..|...++. .+|++||+++..++.+++.. |+ .++.++.+|+.++.....
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~---~nv~v~~~Da~~l~~~~~------- 173 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV---SNAIVTNHAPAELVPHFS------- 173 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC---SSEEEECCCHHHHHHHHT-------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhhhcc-------
Confidence 34578999999999999988887654 69999999999999999875 65 359999999998865432
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 681 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~ 681 (771)
..||+|++|+-.+. .|+....+.. +..++|+.+.+.|+|
T Consensus 174 -------------------------~~FD~Il~DaPCSg--~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp 226 (456)
T 3m4x_A 174 -------------------------GFFDRIVVDAPCSG--EGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN 226 (456)
T ss_dssp -------------------------TCEEEEEEECCCCC--GGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE
T ss_pred -------------------------ccCCEEEECCCCCC--ccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57999999984331 1221111111 234889999999999
Q ss_pred CcEEEEEeccCChhHHHHHHHHHHHhcc
Q 004164 682 QGLFIVNLVSRSQATKDMVISRMKMVFN 709 (771)
Q Consensus 682 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 709 (771)
||.|++...+..++..+.++..+.+-++
T Consensus 227 GG~LvYsTCs~~~eEne~vv~~~l~~~~ 254 (456)
T 3m4x_A 227 KGQLIYSTCTFAPEENEEIISWLVENYP 254 (456)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred CcEEEEEEeecccccCHHHHHHHHHhCC
Confidence 9999999888877777778877776665
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-07 Score=95.83 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=81.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++..+... ..+|++||+++.+++.|++. ++++.+|+.+++....
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~----------- 98 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLP----------- 98 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSC-----------
T ss_pred cCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcC-----------
Confidence 34578999999999999988887 35899999999999999876 7889999999875543
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
+.+||+|++.- . ...+ +.+. -..+|+.+++.|+|||.+++......
T Consensus 99 --------------------~~~fD~i~~~~--~--l~~~--~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 99 --------------------DKYLDGVMISH--F--VEHL--DPER--LFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp --------------------TTCBSEEEEES--C--GGGS--CGGG--HHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred --------------------CCCeeEEEECC--c--hhhC--CcHH--HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 36799999821 1 0001 1111 16899999999999999999876543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-07 Score=103.17 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=86.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcC-------CC----CCCCeeEEEcchHHHHHhh
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFG-------FT----QDKSLKVHITDGIKFVREM 607 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~Fg-------~~----~~~r~~v~i~Dg~~~l~~~ 607 (771)
....+||+||+|+|.++..+... .|..+|++||++|.+++.|++.+. +. ..++++++.+|+.+.+...
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 34568999999999999998887 466799999999999999999863 11 1357999999997653222
Q ss_pred ccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 608 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
. ...||+|++|.... ..++..+.+.|+|||.|++
T Consensus 184 ~-------------------------------~~~fD~V~~~~~~~---------------~~~l~~~~~~LkpgG~lv~ 217 (336)
T 2b25_A 184 K-------------------------------SLTFDAVALDMLNP---------------HVTLPVFYPHLKHGGVCAV 217 (336)
T ss_dssp -----------------------------------EEEEEECSSST---------------TTTHHHHGGGEEEEEEEEE
T ss_pred C-------------------------------CCCeeEEEECCCCH---------------HHHHHHHHHhcCCCcEEEE
Confidence 2 24699999965221 1278999999999999997
Q ss_pred EeccCChhHHHHHHHHHHHh
Q 004164 688 NLVSRSQATKDMVISRMKMV 707 (771)
Q Consensus 688 Nl~~~~~~~~~~v~~~l~~v 707 (771)
-.. .......++..+++.
T Consensus 218 ~~~--~~~~~~~~~~~l~~~ 235 (336)
T 2b25_A 218 YVV--NITQVIELLDGIRTC 235 (336)
T ss_dssp EES--SHHHHHHHHHHHHHH
T ss_pred EeC--CHHHHHHHHHHHHhc
Confidence 653 344444556666653
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-07 Score=95.90 Aligned_cols=85 Identities=11% Similarity=0.212 Sum_probs=69.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
+.+...+.+.+.. .++.+|||||||+|.++..|++.+. +|+++|+++.+++.++++... .++++++++|+.++++
T Consensus 15 ~~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~~~~~~~~-~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 15 SFVLQKIVSAIHP---QKTDTLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAFLQKKYNQ-QKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHHHHHHHTT-CTTEEEEESCTTTCCG
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHhh-CCCcEEEEcchHhCCH
Confidence 4556667777764 5788999999999999999999874 999999999999988777643 5789999999999876
Q ss_pred CC----CCccEEEec
Q 004164 131 MD----ETFDVILDK 141 (771)
Q Consensus 131 ~~----~sFDlVi~~ 141 (771)
++ ++|| |+++
T Consensus 90 ~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 90 SSVKTDKPLR-VVGN 103 (255)
T ss_dssp GGSCCSSCEE-EEEE
T ss_pred HHhccCCCeE-EEec
Confidence 53 5688 5544
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.60 E-value=7.2e-08 Score=96.53 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=79.1
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|+|.++..+..... .+|++||+|+.+++.|++.+....-++++++.+|+.+++...
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~-------------- 119 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK-------------- 119 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--------------
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhc--------------
Confidence 46899999999999887665542 489999999999999999872211157999999999986432
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHH--ccCCCcEEEEEecc
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNLVS 691 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~--~L~~~Gilv~Nl~~ 691 (771)
..+||+|++|.. . ..-...++++.+.+ .|+|||++++....
T Consensus 120 ------------------~~~fD~V~~~~p---~--------~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 120 ------------------GTPHNIVFVDPP---F--------RRGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp ------------------CCCEEEEEECCS---S--------STTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred ------------------CCCCCEEEECCC---C--------CCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 257999999532 0 00123567888876 49999999987644
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-07 Score=96.60 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=81.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|.++..+....+. +|++||+++.+++.|++.+ |+ .++++++.+|+.++ .
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~----~-------- 109 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANC--ADRVKGITGSMDNL----P-------- 109 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----S--------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChhhC----C--------
Confidence 34568999999999999999999875 9999999999999999886 43 46799999998442 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.....||+|+...-- .++--..+|+.+++.|+|||.+++...
T Consensus 110 ---------------------~~~~~fD~v~~~~~l-----------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 110 ---------------------FQNEELDLIWSEGAI-----------YNIGFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp ---------------------SCTTCEEEEEEESCS-----------CCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEEEEEecChH-----------hhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 113679999984211 111237899999999999999998753
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=8.3e-08 Score=99.77 Aligned_cols=106 Identities=8% Similarity=0.030 Sum_probs=78.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-----------------CCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-----------------TQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-----------------~~~~r~~v~i~Dg~~~ 603 (771)
...+||++|+|+|..+.+|.... .+|++||+++.+++.|++..+. ....+++++++|..+.
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRG--HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 45789999999999999998873 5899999999999999887653 1246899999998764
Q ss_pred HHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCc
Q 004164 604 VREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG 683 (771)
Q Consensus 604 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~G 683 (771)
-.. ...+||+|+. . .....+ |++ ....+++.+.+.|+|||
T Consensus 146 ~~~--------------------------------~~~~FD~V~~-~---~~l~~l--~~~--~~~~~l~~~~~~LkpGG 185 (252)
T 2gb4_A 146 PRA--------------------------------NIGKFDRIWD-R---GALVAI--NPG--DHDRYADIILSLLRKEF 185 (252)
T ss_dssp GGG--------------------------------CCCCEEEEEE-S---SSTTTS--CGG--GHHHHHHHHHHTEEEEE
T ss_pred Ccc--------------------------------cCCCEEEEEE-h---hhhhhC--CHH--HHHHHHHHHHHHcCCCe
Confidence 111 0157999985 1 111112 221 23579999999999999
Q ss_pred EEEEE
Q 004164 684 LFIVN 688 (771)
Q Consensus 684 ilv~N 688 (771)
.|++-
T Consensus 186 ~l~l~ 190 (252)
T 2gb4_A 186 QYLVA 190 (252)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-07 Score=99.86 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=82.1
Q ss_pred CCCCcEEEEeccccHHHHHHH-HhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~-~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
....+||+||+|+|.++..+. ...|..+|++||+++.+++.|++.+.-. ..++++++.+|+.+. .
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--------- 183 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL----D--------- 183 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC----C---------
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC----C---------
Confidence 456789999999999988874 5668889999999999999999988421 245799999998763 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc----HHHHHHHHHccCCCcEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
. ...||+|++.. . -..+-+ ..+|+.+++.|+|||.|++..+.+
T Consensus 184 --------------------~-~~~fD~v~~~~--~---------~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 184 --------------------T-REGYDLLTSNG--L---------NIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp --------------------C-CSCEEEEECCS--S---------GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred --------------------c-cCCeEEEEECC--h---------hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 1 15799999721 1 111112 247999999999999999887543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=98.48 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=82.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
..+.+||+||+|.|.++..+... +..+|++||+++.+++.|++.+ |+ .++++++.+|..++ .
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----~-------- 109 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGL--QNRVTGIVGSMDDL----P-------- 109 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----C--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCC--CcCcEEEEcChhhC----C--------
Confidence 45679999999999999999888 7779999999999999999887 43 46799999998543 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
....+||+|++.. . -..+--..+|+.+++.|+|||.+++...
T Consensus 110 ---------------------~~~~~fD~i~~~~--~---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 110 ---------------------FRNEELDLIWSEG--A---------IYNIGFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp ---------------------CCTTCEEEEEESS--C---------GGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEEEEEEcC--C---------ceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 1136799999821 1 1111237899999999999999998754
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=98.95 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=77.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
+...+||+||+|+|.++..|...+ .+|++||+++.|++.|+++ ++++++++|+.+. .
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~------~~v~~~~~~~e~~----~----------- 94 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRH------PRVTYAVAPAEDT----G----------- 94 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCC------TTEEEEECCTTCC----C-----------
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhc------CCceeehhhhhhh----c-----------
Confidence 445789999999999999998876 5899999999999998753 5799999997542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+..||+|++ .... ..+-.+.+|..+++.|+|||+|++-....
T Consensus 95 ------------------~~~~sfD~v~~----~~~~-------h~~~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 95 ------------------LPPASVDVAIA----AQAM-------HWFDLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp ------------------CCSSCEEEEEE----CSCC-------TTCCHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ------------------ccCCcccEEEE----eeeh-------hHhhHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 12478999998 1111 11223679999999999999998755443
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-07 Score=98.25 Aligned_cols=117 Identities=19% Similarity=0.253 Sum_probs=89.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||++|+|.|.++..+... .|..+|++||+++.+++.|++.+ ++ .++++++.+|..++ ..
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---~~------- 178 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL--IERVTIKVRDISEG---FD------- 178 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC--GGGEEEECCCGGGC---CS-------
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHHHc---cc-------
Confidence 34568999999999999999888 56789999999999999999987 43 35799999998764 11
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
...||+|++|... | ..+++.+.+.|+|||.+++...+. .
T Consensus 179 ------------------------~~~~D~V~~~~~~---------~------~~~l~~~~~~L~pgG~l~~~~~~~--~ 217 (277)
T 1o54_A 179 ------------------------EKDVDALFLDVPD---------P------WNYIDKCWEALKGGGRFATVCPTT--N 217 (277)
T ss_dssp ------------------------CCSEEEEEECCSC---------G------GGTHHHHHHHEEEEEEEEEEESSH--H
T ss_pred ------------------------CCccCEEEECCcC---------H------HHHHHHHHHHcCCCCEEEEEeCCH--H
Confidence 2469999995421 1 478999999999999999876432 2
Q ss_pred HHHHHHHHHHHh-cc
Q 004164 696 TKDMVISRMKMV-FN 709 (771)
Q Consensus 696 ~~~~v~~~l~~v-F~ 709 (771)
....+...|++. |.
T Consensus 218 ~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 218 QVQETLKKLQELPFI 232 (277)
T ss_dssp HHHHHHHHHHHSSEE
T ss_pred HHHHHHHHHHHCCCc
Confidence 334556666653 44
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-07 Score=91.48 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=93.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..|.... .+|++||+++.+++.|++.+.- .++++++.+|..++.
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~--------------- 110 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKR--WSHISWAATDILQFS--------------- 110 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTT--CSSEEEEECCTTTCC---------------
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhccc--CCCeEEEEcchhhCC---------------
Confidence 445789999999999999998875 5899999999999999999853 348999999986642
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc----HHHHHHHHHccCCCcEEEEEeccC---
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSR--- 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~~~--- 692 (771)
...+||+|++.- . -.++-+ ..+|+.+.+.|+|||.|++.....
T Consensus 111 -------------------~~~~fD~v~~~~--~---------l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 160 (216)
T 3ofk_A 111 -------------------TAELFDLIVVAE--V---------LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATC 160 (216)
T ss_dssp -------------------CSCCEEEEEEES--C---------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred -------------------CCCCccEEEEcc--H---------HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcc
Confidence 136799999831 1 112222 467999999999999999865221
Q ss_pred ----ChhHHHHHHHHHHHhccceEEeee
Q 004164 693 ----SQATKDMVISRMKMVFNHLFCLQL 716 (771)
Q Consensus 693 ----~~~~~~~v~~~l~~vF~~v~~~~~ 716 (771)
.....+.+...+.+.|..+-.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 188 (216)
T 3ofk_A 161 RRWGHVAGAETVITILTEALTEVERVQC 188 (216)
T ss_dssp HHTTCSCCHHHHHHHHHHHSEEEEEEEE
T ss_pred hhhhhhhhHHHHHHHHHhhccceEEEec
Confidence 112234556677777776544443
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.58 E-value=7.9e-08 Score=96.33 Aligned_cols=104 Identities=9% Similarity=0.020 Sum_probs=75.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeeEEEcchHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~------------~~~r~~v~i~Dg~~~l~~~~ 608 (771)
...+||++|+|+|..+.+|.... .+|++||+++.|++.|++..+.. ...+++++++|..+.-...
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~- 98 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD- 98 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH-
T ss_pred CCCEEEEeCCCCcHhHHHHHHCC--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc-
Confidence 45789999999999999998873 59999999999999999986541 1357999999987642110
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
..+||+|+.-. . ...+ |++ ....+++.+++.|+|||.++
T Consensus 99 -------------------------------~~~fD~v~~~~--~--l~~l--~~~--~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 99 -------------------------------IGHCAAFYDRA--A--MIAL--PAD--MRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp -------------------------------HHSEEEEEEES--C--GGGS--CHH--HHHHHHHHHHHHSCSEEEEE
T ss_pred -------------------------------CCCEEEEEECc--c--hhhC--CHH--HHHHHHHHHHHHcCCCcEEE
Confidence 04699998511 1 0001 111 12468999999999999733
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=94.80 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=100.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|.|.++..+.... |..++++||+++.+++.|++.+.-..-++++++.+|+.++ .
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~---------- 101 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI----P---------- 101 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC----S----------
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC----C----------
Confidence 345789999999999988888876 7779999999999999999987211123799999997543 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh---
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA--- 695 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~--- 695 (771)
....+||+|++...-. .+ + -...+|+.+.+.|+|||.+++..+.....
T Consensus 102 -------------------~~~~~fD~v~~~~~l~----~~----~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 152 (219)
T 3dh0_A 102 -------------------LPDNTVDFIFMAFTFH----EL----S--EPLKFLEELKRVAKPFAYLAIIDWKKEERDKG 152 (219)
T ss_dssp -------------------SCSSCEEEEEEESCGG----GC----S--SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS
T ss_pred -------------------CCCCCeeEEEeehhhh----hc----C--CHHHHHHHHHHHhCCCeEEEEEEecccccccC
Confidence 1136799999842110 01 0 12789999999999999999865433210
Q ss_pred -------HHHHHHHHHHHh-ccceEEeeecCCccEEEEEecCC
Q 004164 696 -------TKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 730 (771)
Q Consensus 696 -------~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~~~ 730 (771)
..+.+...+++. |..+-..... ....++++.+..
T Consensus 153 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-~~~~~~~~~k~~ 194 (219)
T 3dh0_A 153 PPPEEVYSEWEVGLILEDAGIRVGRVVEVG-KYCFGVYAMIVK 194 (219)
T ss_dssp CCGGGSCCHHHHHHHHHHTTCEEEEEEEET-TTEEEEEEECC-
T ss_pred CchhcccCHHHHHHHHHHCCCEEEEEEeeC-CceEEEEEEecc
Confidence 134556666665 6655544433 345666666543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.5e-07 Score=89.43 Aligned_cols=140 Identities=15% Similarity=0.054 Sum_probs=96.1
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||+||+|.|.++..|... ..++++||+++.+++.|++.+ ++++++.+|+.++ ...
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~--~~~------------- 99 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH-----PSVTFHHGTITDL--SDS------------- 99 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC-----TTSEEECCCGGGG--GGS-------------
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-----CCCeEEeCccccc--ccC-------------
Confidence 578999999999999988887 358999999999999999985 3689999998764 111
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCCh-------
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ------- 694 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~------- 694 (771)
+.+||+|++.. . ...+ |+. --..+|+.+++.|+|||.+++.......
T Consensus 100 ------------------~~~fD~v~~~~--~--l~~~--~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 153 (203)
T 3h2b_A 100 ------------------PKRWAGLLAWY--S--LIHM--GPG--ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHP 153 (203)
T ss_dssp ------------------CCCEEEEEEES--S--STTC--CTT--THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCS
T ss_pred ------------------CCCeEEEEehh--h--HhcC--CHH--HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhch
Confidence 36799999832 1 0001 111 1278999999999999999988755432
Q ss_pred ------hHHHHHHHHHHHh-ccceEEeeecCCccEEEEEecC
Q 004164 695 ------ATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSS 729 (771)
Q Consensus 695 ------~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~~ 729 (771)
...+.+...+++. |.-+............+...+.
T Consensus 154 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~~~~ 195 (203)
T 3h2b_A 154 VATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAEAS 195 (203)
T ss_dssp SSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEEEEC
T ss_pred hhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhhhhh
Confidence 1134555666655 5544443333334444444443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=93.97 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=87.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..+... +..+|++||+++.+++.|++.+....-+.++++.+|..++.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------------- 122 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--------------- 122 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC---------------
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC---------------
Confidence 34578999999999999988875 66799999999999999999873211123999999986531
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
..+||+|+.+.. ... -..+++.+.+.|+|||.+++..+... ....
T Consensus 123 --------------------~~~fD~i~~~~~-----------~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~ 167 (205)
T 3grz_A 123 --------------------DGKFDLIVANIL-----------AEI--LLDLIPQLDSHLNEDGQVIFSGIDYL--QLPK 167 (205)
T ss_dssp --------------------CSCEEEEEEESC-----------HHH--HHHHGGGSGGGEEEEEEEEEEEEEGG--GHHH
T ss_pred --------------------CCCceEEEECCc-----------HHH--HHHHHHHHHHhcCCCCEEEEEecCcc--cHHH
Confidence 257999999531 111 26889999999999999998644332 2334
Q ss_pred HHHHHHHh-ccce
Q 004164 700 VISRMKMV-FNHL 711 (771)
Q Consensus 700 v~~~l~~v-F~~v 711 (771)
+...+++. |..+
T Consensus 168 ~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 168 IEQALAENSFQID 180 (205)
T ss_dssp HHHHHHHTTEEEE
T ss_pred HHHHHHHcCCceE
Confidence 55556554 5443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-07 Score=96.08 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=79.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-----CCCeeEEEcchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-----~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
..+.+||+||+|+|.++..+....|..++++||+++.+++.|++.+.... .++++++.+|... ..
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~------ 97 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY----RD------ 97 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS----CC------
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc----cc------
Confidence 34579999999999999999998887899999999999999999874211 1279999999621 11
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEEe
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....+||+|+..- . -..+-+ ..+|+.+++.|+|||+++...
T Consensus 98 -----------------------~~~~~fD~V~~~~--~---------l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 98 -----------------------KRFSGYDAATVIE--V---------IEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp -----------------------GGGTTCSEEEEES--C---------GGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred -----------------------cccCCCCEEEEHH--H---------HHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 0125799999721 1 122222 479999999999999887643
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=99.72 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=42.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F 585 (771)
...+||+||+|.|.++..|...++..+|++||+|+.+++.|++..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~ 90 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNI 90 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHH
Confidence 467999999999999999999998889999999999999999986
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.57 E-value=4.2e-07 Score=91.73 Aligned_cols=140 Identities=15% Similarity=0.117 Sum_probs=89.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHH----HHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTML----NLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~----~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||+||+|+|.++..|....+..+|++||++|.++ +.|++. +++.++++|+........
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~------~~v~~~~~d~~~~~~~~~------- 122 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------NNIIPLLFDASKPWKYSG------- 122 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------SSEEEECSCTTCGGGTTT-------
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC------CCeEEEEcCCCCchhhcc-------
Confidence 345689999999999999999888766999999999765 445432 357888888754210000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC---
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--- 692 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~--- 692 (771)
. ...||+|++|+.. + -....+++.+++.|+|||.|++.+-.+
T Consensus 123 ----------------------~-~~~fD~V~~~~~~----------~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 167 (210)
T 1nt2_A 123 ----------------------I-VEKVDLIYQDIAQ----------K--NQIEILKANAEFFLKEKGEVVIMVKARSID 167 (210)
T ss_dssp ----------------------T-CCCEEEEEECCCS----------T--THHHHHHHHHHHHEEEEEEEEEEEEHHHHC
T ss_pred ----------------------c-ccceeEEEEeccC----------h--hHHHHHHHHHHHHhCCCCEEEEEEecCCcc
Confidence 0 2579999997411 1 112346899999999999999875221
Q ss_pred ---Ch-hHHHHHHHHHHHhccceEEeeecC--CccEEEEEe
Q 004164 693 ---SQ-ATKDMVISRMKMVFNHLFCLQLEE--DVNLVLFGL 727 (771)
Q Consensus 693 ---~~-~~~~~v~~~l~~vF~~v~~~~~~~--~~N~Vl~a~ 727 (771)
+. +.....++.|++.|.-+-...... ..+.++++.
T Consensus 168 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~p~~~~h~~~~~~ 208 (210)
T 1nt2_A 168 STAEPEEVFKSVLKEMEGDFKIVKHGSLMPYHRDHIFIHAY 208 (210)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEEEEECTTTCTTEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhhcEEeeeecCCCCCCCcEEEEEE
Confidence 11 112123455676676544444322 234555554
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.56 E-value=9e-08 Score=100.03 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=82.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..+...+|..++++||+++.+++.|++.+.-..-++++++.+|..+. .
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~----------- 100 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL----P----------- 100 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC----C-----------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC----C-----------
Confidence 4567999999999999999999998899999999999999999987322224699999998753 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....+||+|++...-. .+ | -...+|+.+++.|+|||.+++..
T Consensus 101 ------------------~~~~~fD~v~~~~~l~----~~--~----~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 101 ------------------FEDSSFDHIFVCFVLE----HL--Q----SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp ------------------SCTTCEEEEEEESCGG----GC--S----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCCeeEEEEechhh----hc--C----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 1136799999832110 01 0 12589999999999999999854
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.56 E-value=3e-07 Score=101.12 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=81.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+|| |+|.++..+....|..+|++||+||.++++|++++ |+ + +++++.+|+.+++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~--~-~v~~~~~D~~~~l~~~---------- 237 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY--E-DIEIFTFDLRKPLPDY---------- 237 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC--C-CEEEECCCTTSCCCTT----------
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--C-CEEEEEChhhhhchhh----------
Confidence 357899999 99999999988877679999999999999999987 55 2 7999999997643210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCc-EEEEEecc
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVNLVS 691 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~G-ilv~Nl~~ 691 (771)
....||+|++|. + . .+.. ...||+.+.+.|+||| ++++.+..
T Consensus 238 ---------------------~~~~fD~Vi~~~--p--~-----~~~~--~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 238 ---------------------ALHKFDTFITDP--P--E-----TLEA--IRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp ---------------------TSSCBSEEEECC--C--S-----SHHH--HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred ---------------------ccCCccEEEECC--C--C-----chHH--HHHHHHHHHHHcccCCeEEEEEEec
Confidence 024799999963 1 0 0112 3889999999999999 55666654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.6e-07 Score=92.44 Aligned_cols=84 Identities=14% Similarity=0.233 Sum_probs=65.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (771)
.+...+.+.+.. .++.+|||+|||+|.++..|++.+. +|+++|+++.+++.++++.. ..++++++++|+.+++++
T Consensus 17 ~~~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 17 HNIDKIMTNIRL---NEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLV-DHDNFQVLNKDILQFKFP 91 (244)
T ss_dssp HHHHHHHTTCCC---CTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTT-TCCSEEEECCCGGGCCCC
T ss_pred HHHHHHHHhCCC---CCCCEEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHHHHHHhhc-cCCCeEEEEChHHhCCcc
Confidence 444445555543 5788999999999999999999874 99999999999998877664 346899999999998876
Q ss_pred C-CCccEEEec
Q 004164 132 D-ETFDVILDK 141 (771)
Q Consensus 132 ~-~sFDlVi~~ 141 (771)
+ ..| .|+++
T Consensus 92 ~~~~~-~vv~n 101 (244)
T 1qam_A 92 KNQSY-KIFGN 101 (244)
T ss_dssp SSCCC-EEEEE
T ss_pred cCCCe-EEEEe
Confidence 4 455 45544
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-07 Score=96.14 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=81.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..+....+. ++++||+++.+++.|++.+. ..+++++.+|..++ .
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~----~------------ 103 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDI----A------------ 103 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGC----C------------
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhC----C------------
Confidence 5678999999999999999888654 89999999999999999986 57899999998643 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
....+||+|++.. . ...+ . --..+|+.+++.|+|||.|++.+.
T Consensus 104 -----------------~~~~~fD~v~~~~--~--l~~~----~--~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 104 -----------------IEPDAYNVVLSSL--A--LHYI----A--SFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp -----------------CCTTCEEEEEEES--C--GGGC----S--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----------------CCCCCeEEEEEch--h--hhhh----h--hHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1136799999832 1 1111 1 127899999999999999998753
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-07 Score=95.62 Aligned_cols=117 Identities=18% Similarity=0.161 Sum_probs=87.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||++|+|.|.++..+... ..+|++||+++.+++.|++.+ ++ +++++++.+|..+...
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 154 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNL--GKNVKFFNVDFKDAEV------------ 154 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTC--CTTEEEECSCTTTSCC------------
T ss_pred CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCC--CCcEEEEEcChhhccc------------
Confidence 4568999999999999888888 569999999999999999986 43 4678999898865310
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
....||+|+.|... ...+++.+.+.|+|||.+++...+. ...
T Consensus 155 ---------------------~~~~~D~v~~~~~~---------------~~~~l~~~~~~L~~gG~l~~~~~~~--~~~ 196 (248)
T 2yvl_A 155 ---------------------PEGIFHAAFVDVRE---------------PWHYLEKVHKSLMEGAPVGFLLPTA--NQV 196 (248)
T ss_dssp ---------------------CTTCBSEEEECSSC---------------GGGGHHHHHHHBCTTCEEEEEESSH--HHH
T ss_pred ---------------------CCCcccEEEECCcC---------------HHHHHHHHHHHcCCCCEEEEEeCCH--HHH
Confidence 12569999985321 1467899999999999999876432 333
Q ss_pred HHHHHHHHHhccce
Q 004164 698 DMVISRMKMVFNHL 711 (771)
Q Consensus 698 ~~v~~~l~~vF~~v 711 (771)
..+...+++.|..+
T Consensus 197 ~~~~~~l~~~f~~~ 210 (248)
T 2yvl_A 197 IKLLESIENYFGNL 210 (248)
T ss_dssp HHHHHHSTTTEEEE
T ss_pred HHHHHHHHhhCCcc
Confidence 44555555445543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=85.07 Aligned_cols=114 Identities=9% Similarity=0.046 Sum_probs=86.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|.|.++..+.. +..++++||+++.+++.|++.+....-++++++.+|..+.+..
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~-------------- 98 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK-------------- 98 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--------------
T ss_pred CCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--------------
Confidence 456899999999999888888 6679999999999999999987221115799999999884221
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
..||+|+++.. -.-..+++.+++. |||.+++.... ......+
T Consensus 99 --------------------~~~D~i~~~~~--------------~~~~~~l~~~~~~--~gG~l~~~~~~--~~~~~~~ 140 (183)
T 2yxd_A 99 --------------------LEFNKAFIGGT--------------KNIEKIIEILDKK--KINHIVANTIV--LENAAKI 140 (183)
T ss_dssp --------------------CCCSEEEECSC--------------SCHHHHHHHHHHT--TCCEEEEEESC--HHHHHHH
T ss_pred --------------------CCCcEEEECCc--------------ccHHHHHHHHhhC--CCCEEEEEecc--cccHHHH
Confidence 46999999532 1237889999888 99999987643 3334456
Q ss_pred HHHHHHhc
Q 004164 701 ISRMKMVF 708 (771)
Q Consensus 701 ~~~l~~vF 708 (771)
.+.+++.-
T Consensus 141 ~~~l~~~g 148 (183)
T 2yxd_A 141 INEFESRG 148 (183)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 77777664
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-07 Score=93.20 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=81.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++..+... ..++++||+++.+++.|++ .+. ++++++.+|..++ ..
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~-~~~---~~~~~~~~d~~~~---~~----------- 104 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR-HGL---DNVEFRQQDLFDW---TP----------- 104 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG-GCC---TTEEEEECCTTSC---CC-----------
T ss_pred CCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh-cCC---CCeEEEecccccC---CC-----------
Confidence 34569999999999999999888 4699999999999999999 332 5799999998654 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEEeccCCh
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNLVSRSQ 694 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl~~~~~ 694 (771)
..+||+|++.. . -.++-+ ..+|+.+++.|+|||.+++....+..
T Consensus 105 --------------------~~~~D~v~~~~--~---------l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 151 (218)
T 3ou2_A 105 --------------------DRQWDAVFFAH--W---------LAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHE 151 (218)
T ss_dssp --------------------SSCEEEEEEES--C---------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC
T ss_pred --------------------CCceeEEEEec--h---------hhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 36799999832 1 112222 68999999999999999998776643
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=85.73 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=87.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++..+... ..++++||+++.+++.|++.+. +++++.+|..++ .
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~----~----------- 102 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP-----EARWVVGDLSVD----Q----------- 102 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTS----C-----------
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC-----CCcEEEcccccC----C-----------
Confidence 35679999999999999988887 3599999999999999999872 488888887653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
.....||+|++....- .-+ +++ .-..+|+.+.+.|+|||.+++............
T Consensus 103 ------------------~~~~~~D~i~~~~~~~---~~~--~~~--~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~ 157 (195)
T 3cgg_A 103 ------------------ISETDFDLIVSAGNVM---GFL--AED--GREPALANIHRALGADGRAVIGFGAGRGWVFGD 157 (195)
T ss_dssp ------------------CCCCCEEEEEECCCCG---GGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHH
T ss_pred ------------------CCCCceeEEEECCcHH---hhc--ChH--HHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHH
Confidence 1135799999831000 000 011 126799999999999999999876554333445
Q ss_pred HHHHHHHh-cc
Q 004164 700 VISRMKMV-FN 709 (771)
Q Consensus 700 v~~~l~~v-F~ 709 (771)
+...+.+. |.
T Consensus 158 ~~~~l~~~Gf~ 168 (195)
T 3cgg_A 158 FLEVAERVGLE 168 (195)
T ss_dssp HHHHHHHHTEE
T ss_pred HHHHHHHcCCE
Confidence 55666554 54
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-07 Score=96.63 Aligned_cols=121 Identities=16% Similarity=0.125 Sum_probs=89.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..+....+ +|++||+||.+++.|++.+....-+ ++++.+|..+.+.
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~--------------- 181 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP--------------- 181 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG---------------
T ss_pred CCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCc---------------
Confidence 457899999999999998888754 9999999999999999987321112 8999999988531
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
..+||+|+.+... .. -..++..+.+.|+|||.+++.-+... ..+.+
T Consensus 182 -------------------~~~fD~Vv~n~~~-----------~~--~~~~l~~~~~~LkpgG~lils~~~~~--~~~~v 227 (254)
T 2nxc_A 182 -------------------FGPFDLLVANLYA-----------EL--HAALAPRYREALVPGGRALLTGILKD--RAPLV 227 (254)
T ss_dssp -------------------GCCEEEEEEECCH-----------HH--HHHHHHHHHHHEEEEEEEEEEEEEGG--GHHHH
T ss_pred -------------------CCCCCEEEECCcH-----------HH--HHHHHHHHHHHcCCCCEEEEEeeccC--CHHHH
Confidence 1469999985311 11 26899999999999999998643332 24456
Q ss_pred HHHHHHh-ccceEE
Q 004164 701 ISRMKMV-FNHLFC 713 (771)
Q Consensus 701 ~~~l~~v-F~~v~~ 713 (771)
.+.+++. |..+..
T Consensus 228 ~~~l~~~Gf~~~~~ 241 (254)
T 2nxc_A 228 REAMAGAGFRPLEE 241 (254)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHCCCEEEEE
Confidence 6777766 654433
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4e-07 Score=87.36 Aligned_cols=143 Identities=14% Similarity=0.177 Sum_probs=94.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHH--HhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFV--REMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l--~~~~~~~~~~~~ 616 (771)
....+||++|+|+|.++..+...+ |..++++||+++ ++++ ++++++.+|..+.- +....
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~------- 82 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLE------- 82 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHH-------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhc-------
Confidence 345689999999999999888885 667999999999 6532 57899999987641 11100
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-------cHHHHHHHHHccCCCcEEEEEe
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-------EGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-------~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.....+||+|+.|..-. ..+ ....- ...+++.+.+.|+|||.+++..
T Consensus 83 --------------------~~~~~~~D~i~~~~~~~--~~~----~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 83 --------------------RVGDSKVQVVMSDMAPN--MSG----TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp --------------------HHTTCCEEEEEECCCCC--CCS----CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------------cCCCCceeEEEECCCcc--ccC----CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 00125799999853211 000 00000 1689999999999999999877
Q ss_pred ccCChhHHHHHHHHHHHhccceEEeeec----CCccEEEEEec
Q 004164 690 VSRSQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLS 728 (771)
Q Consensus 690 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~~ 728 (771)
..... ...+...++..|..+...... .....+++|..
T Consensus 137 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (180)
T 1ej0_A 137 FQGEG--FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177 (180)
T ss_dssp ESSTT--HHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred ecCCc--HHHHHHHHHHhhhhEEeecCCcccccCceEEEEEcc
Confidence 65433 245678888888876655432 22345555543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-07 Score=93.10 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=78.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..+... ..+|++||+++.+++.|++.+.-..-++++++.+|+.+....
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------------- 140 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA------------- 140 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc-------------
Confidence 45678999999999999999888 469999999999999999987321124799999999774222
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
...||+|+++..-. .+. ..+.+.|+|||.+++.+..
T Consensus 141 --------------------~~~~D~i~~~~~~~-----------~~~-----~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 --------------------RAPFDAIIVTAAPP-----------EIP-----TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp --------------------GCCEEEEEESSBCS-----------SCC-----THHHHTEEEEEEEEEEECS
T ss_pred --------------------CCCccEEEEccchh-----------hhh-----HHHHHhcccCcEEEEEEcC
Confidence 25799999963221 111 2578999999999998865
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=98.09 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=83.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+.+||+||+|+|.++..|... ..+|++||+++.+++.|++.+.-. ..++++++.+|+.+....
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------------- 132 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH------------- 132 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-------------
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-------------
Confidence 3579999999999999988887 469999999999999999987321 136899999998765311
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCCh
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 694 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 694 (771)
...+||+|++.. . ...+ +. ...+|+.+++.|+|||.+++.......
T Consensus 133 -------------------~~~~fD~v~~~~--~--l~~~----~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (285)
T 4htf_A 133 -------------------LETPVDLILFHA--V--LEWV----AD--PRSVLQTLWSVLRPGGVLSLMFYNAHG 178 (285)
T ss_dssp -------------------CSSCEEEEEEES--C--GGGC----SC--HHHHHHHHHHTEEEEEEEEEEEEBHHH
T ss_pred -------------------cCCCceEEEECc--h--hhcc----cC--HHHHHHHHHHHcCCCeEEEEEEeCCch
Confidence 136799999832 1 0001 11 168999999999999999998765543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.6e-07 Score=100.32 Aligned_cols=114 Identities=11% Similarity=0.147 Sum_probs=81.9
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FM 131 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~ 131 (771)
..+.+++.. .+.+|||+|||+|.++..|+.. ..+|+++|+|+.+++.+++.+...+ .+++|+++|+.++. +.
T Consensus 204 ~~~~~~~~~----~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~ 278 (369)
T 3bt7_A 204 EWALDVTKG----SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN 278 (369)
T ss_dssp HHHHHHTTT----CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHS
T ss_pred HHHHHHhhc----CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHh
Confidence 344444442 3578999999999999999875 4599999999999998877665444 57999999987652 22
Q ss_pred C--------------CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhc
Q 004164 132 D--------------ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186 (771)
Q Consensus 132 ~--------------~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~ 186 (771)
. .+||+|+..-.-. .+..++.+.|+++|+++.++........
T Consensus 279 ~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-------------g~~~~~~~~l~~~g~ivyvsc~p~t~ar 334 (369)
T 3bt7_A 279 GVREFNRLQGIDLKSYQCETIFVDPPRS-------------GLDSETEKMVQAYPRILYISCNPETLCK 334 (369)
T ss_dssp SCCCCTTGGGSCGGGCCEEEEEECCCTT-------------CCCHHHHHHHTTSSEEEEEESCHHHHHH
T ss_pred hccccccccccccccCCCCEEEECcCcc-------------ccHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 1 3799998532111 2345667777899999999876544433
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-07 Score=99.19 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=92.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..+....+..+|++||++|.+++.|++.+....-+++.++.+|+.++ ..
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~-------------- 183 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL-------------- 183 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------------
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------------
Confidence 456899999999999999999887779999999999999999987332224588999999876 22
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCCh---hHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ---ATK 697 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~---~~~ 697 (771)
..+||+|++|.. . --.+++..+.+.|+|||++++....... +..
T Consensus 184 -------------------~~~~D~Vi~d~p------------~--~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~ 230 (272)
T 3a27_A 184 -------------------KDVADRVIMGYV------------H--KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERP 230 (272)
T ss_dssp -------------------TTCEEEEEECCC------------S--SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHH
T ss_pred -------------------cCCceEEEECCc------------c--cHHHHHHHHHHHcCCCCEEEEEEcCccccccccH
Confidence 157999999632 1 2256899999999999999987765422 334
Q ss_pred HHHHHHHHHhcc
Q 004164 698 DMVISRMKMVFN 709 (771)
Q Consensus 698 ~~v~~~l~~vF~ 709 (771)
...+..+.+.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (272)
T 3a27_A 231 IERLKFYAEKNG 242 (272)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 455667776553
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=95.45 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=80.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|.++..+....+ +|++||+++.+++.|++.+.- +++++.+|..+. ..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~---~~------------ 100 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD----GITYIHSRFEDA---QL------------ 100 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC---CC------------
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc---Cc------------
Confidence 456899999999999999988765 799999999999999999852 799999998764 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHH-HccCCCcEEEEEeccCC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK-DALSEQGLFIVNLVSRS 693 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~-~~L~~~Gilv~Nl~~~~ 693 (771)
+..||+|++-- ....+ + -...+|+.++ +.|+|||.+++......
T Consensus 101 -------------------~~~fD~v~~~~----~l~~~--~----~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 101 -------------------PRRYDNIVLTH----VLEHI--D----DPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp -------------------SSCEEEEEEES----CGGGC--S----SHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred -------------------CCcccEEEEhh----HHHhh--c----CHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 36799999721 11111 0 1268999999 99999999999875543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.2e-07 Score=94.48 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=88.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcCCC---CCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~Fg~~---~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||++|+|.|.++..|... .|..+|++||+++.+++.|++.+.-. ..++++++.+|+.+. ..
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~--~~-------- 167 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--EL-------- 167 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CC--------
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc--CC--------
Confidence 34568999999999999988885 46789999999999999999987210 135799999998653 11
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
....||+|++|+... ..+++.+.+.|+|||.+++...+. +
T Consensus 168 -----------------------~~~~~D~v~~~~~~~---------------~~~l~~~~~~L~pgG~l~~~~~~~--~ 207 (280)
T 1i9g_A 168 -----------------------PDGSVDRAVLDMLAP---------------WEVLDAVSRLLVAGGVLMVYVATV--T 207 (280)
T ss_dssp -----------------------CTTCEEEEEEESSCG---------------GGGHHHHHHHEEEEEEEEEEESSH--H
T ss_pred -----------------------CCCceeEEEECCcCH---------------HHHHHHHHHhCCCCCEEEEEeCCH--H
Confidence 125799999965311 368999999999999999887543 3
Q ss_pred HHHHHHHHHHH
Q 004164 696 TKDMVISRMKM 706 (771)
Q Consensus 696 ~~~~v~~~l~~ 706 (771)
....++..+++
T Consensus 208 ~~~~~~~~l~~ 218 (280)
T 1i9g_A 208 QLSRIVEALRA 218 (280)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34456677765
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-06 Score=88.54 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=78.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|.|.++..|... ..++++||+++.+++.|++.+. .+++++.+|+.++ .
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~----~------------ 102 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSF----E------------ 102 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSC----C------------
T ss_pred CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhc----C------------
Confidence 4579999999999999988887 4699999999999999999986 5788998887653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEEec
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.. ..||+|++.. . -..+-+ ..+|+.+++.|+|||.+++...
T Consensus 103 -----------------~~-~~fD~v~~~~--~---------l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 103 -----------------VP-TSIDTIVSTY--A---------FHHLTDDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp -----------------CC-SCCSEEEEES--C---------GGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred -----------------CC-CCeEEEEECc--c---------hhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 11 5799999841 1 112222 3389999999999999998753
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.2e-07 Score=90.94 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=76.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
.+.+||.||.| ..+.++... +..+|++||.|+...+.|+++| |+...++++++++|+.+...-.. +.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~---p~---- 99 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGH---PV---- 99 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGC---BS----
T ss_pred CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccc---cc----
Confidence 35799999985 455555553 4679999999999999999999 44225789999999764310000 00
Q ss_pred cccccccccCCCCCCCCC------CCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE-Eec
Q 004164 618 VVHGNEITSNNTRSCNGN------CTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLV 690 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~------~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~-Nl~ 690 (771)
+. ........ .......||+||+|.+.. ..++..+..+|+|||++++ |+.
T Consensus 100 -----~~---~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~---------------~~~~~~~l~~l~~GG~Iv~DNv~ 156 (202)
T 3cvo_A 100 -----SD---AKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR---------------VGCALATAFSITRPVTLLFDDYS 156 (202)
T ss_dssp -----SS---TTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH---------------HHHHHHHHHHCSSCEEEEETTGG
T ss_pred -----cc---hhhhhHHHHhhhhhccccCCCCCEEEEeCCCc---------------hhHHHHHHHhcCCCeEEEEeCCc
Confidence 00 00000000 000125799999987422 3666777799999999988 554
Q ss_pred cC
Q 004164 691 SR 692 (771)
Q Consensus 691 ~~ 692 (771)
.+
T Consensus 157 ~r 158 (202)
T 3cvo_A 157 QR 158 (202)
T ss_dssp GC
T ss_pred CC
Confidence 44
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-07 Score=95.37 Aligned_cols=104 Identities=13% Similarity=0.232 Sum_probs=77.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..|....+ +|++||+++.+++.|++.+.-..-++++++++|+.++ .
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l----~----------- 98 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM----P----------- 98 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC----C-----------
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC----C-----------
Confidence 4567999999999999999988874 8999999999999999886211124699999997542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+..||+|+... . ...+ | --..+|+.+++.|+|||.|++-
T Consensus 99 ------------------~~~~~fD~V~~~~--~--l~~~--~----d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 99 ------------------FTDERFHIVTCRI--A--AHHF--P----NPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp ------------------SCTTCEEEEEEES--C--GGGC--S----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------CCCCCEEEEEEhh--h--hHhc--C----CHHHHHHHHHHHcCCCCEEEEE
Confidence 1136799999832 1 0011 0 1268999999999999999974
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=98.83 Aligned_cols=119 Identities=10% Similarity=0.045 Sum_probs=88.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||++|+|+|.++..+....+. +|++||++|.+++.|++..... -+++++++.+|+.++..
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-------------- 189 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------------- 189 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------------
T ss_pred CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------------
Confidence 3578999999999999999988765 8999999999999999987321 14579999999977632
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC----hh
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS----QA 695 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~----~~ 695 (771)
..+||+|++|. | ....+++..+.+.|+|||+|++-..... ..
T Consensus 190 --------------------~~~fD~Vi~~~------------p--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 235 (278)
T 2frn_A 190 --------------------ENIADRILMGY------------V--VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPRE 235 (278)
T ss_dssp --------------------CSCEEEEEECC------------C--SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTT
T ss_pred --------------------cCCccEEEECC------------c--hhHHHHHHHHHHHCCCCeEEEEEEeecccccccc
Confidence 25799999952 1 1126789999999999999998654431 23
Q ss_pred HHHHHHHHHHHhc
Q 004164 696 TKDMVISRMKMVF 708 (771)
Q Consensus 696 ~~~~v~~~l~~vF 708 (771)
..+.+...+++.-
T Consensus 236 ~~~~i~~~~~~~G 248 (278)
T 2frn_A 236 PFETFKRITKEYG 248 (278)
T ss_dssp THHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 3444555555443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-07 Score=95.94 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=78.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|.++..|.... ..+|++||+++.+++.|++.+.-....+++++.+|..++ .
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~------------ 141 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF----T------------ 141 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC----C------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc----C------------
Confidence 46799999999999998887776 459999999999999999998532234689999986543 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....+||+|+++. . ...+ |.+. -..+|+.+++.|+|||.|++..
T Consensus 142 -----------------~~~~~fD~v~~~~--~--l~~~--~~~~--~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 142 -----------------PEPDSYDVIWIQW--V--IGHL--TDQH--LAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp -----------------CCSSCEEEEEEES--C--GGGS--CHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------CCCCCEEEEEEcc--h--hhhC--CHHH--HHHHHHHHHHhcCCCeEEEEEE
Confidence 1135799999852 1 0000 1111 1479999999999999999843
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-07 Score=95.04 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=97.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|.|.++..+....|..+|++||+||..++.|++.. |+ +++++++.+|+++-+..
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~i~~~~~d~l~~l~~----------- 81 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL--KEKIQVRLANGLAAFEE----------- 81 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG-----------
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEECchhhhccc-----------
Confidence 446899999999999999999988889999999999999999886 55 56899999999764321
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
+.+||+|++- || ..-+-.++|..+...|+++|.||++-... .
T Consensus 82 ----------------------~~~~D~Ivia--------G~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~----~ 123 (225)
T 3kr9_A 82 ----------------------TDQVSVITIA--------GM----GGRLIARILEEGLGKLANVERLILQPNNR----E 123 (225)
T ss_dssp ----------------------GGCCCEEEEE--------EE----CHHHHHHHHHHTGGGCTTCCEEEEEESSC----H
T ss_pred ----------------------CcCCCEEEEc--------CC----ChHHHHHHHHHHHHHhCCCCEEEEECCCC----H
Confidence 1259999871 22 01123789999999999999999987532 2
Q ss_pred HHHHHHHHHh-ccceEEeeecCC--ccEEEEEecCC
Q 004164 698 DMVISRMKMV-FNHLFCLQLEED--VNLVLFGLSSE 730 (771)
Q Consensus 698 ~~v~~~l~~v-F~~v~~~~~~~~--~N~Vl~a~~~~ 730 (771)
..+...|.+. |.-+-..-+.++ .=+|+.+.+.+
T Consensus 124 ~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~~~~ 159 (225)
T 3kr9_A 124 DDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQ 159 (225)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESC
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeCC
Confidence 2344555444 442222212222 23566666543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-07 Score=94.97 Aligned_cols=103 Identities=11% Similarity=0.104 Sum_probs=79.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|+|.++..|...+ ..++++||+++.+++.|++.+ |+ .++++++.+|+.+...
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~v~~~~~d~~~~~~----------- 100 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDAAGYVA----------- 100 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCCTTCCC-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECChHhCCc-----------
Confidence 345689999999999999998887 458999999999999999886 44 4579999999865310
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
+..||+|++- ..-.. + + --..+|+.+++.|+|||.+++..
T Consensus 101 -----------------------~~~fD~V~~~-~~~~~---~----~--~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 101 -----------------------NEKCDVAACV-GATWI---A----G--GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp -----------------------SSCEEEEEEE-SCGGG---T----S--SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred -----------------------CCCCCEEEEC-CChHh---c----C--CHHHHHHHHHHHcCCCeEEEEec
Confidence 2579999971 11100 0 0 13889999999999999999854
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-07 Score=93.57 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=82.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++..+....+. +|++||+++.+++.|++.+.- .++++++.+|+.+. ..
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~--~~------------ 103 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKL--DF------------ 103 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSC--CS------------
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcC--CC------------
Confidence 34578999999999999988887554 899999999999999999752 46899999998653 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC---c-----Cc-ccHHHHHHHHHccCCCcEEEEEec
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA---A-----DF-VEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp---~-----~f-~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
....||+|+....- ..+.|.. . .. ....+|+.+.+.|+|||.+++...
T Consensus 104 -------------------~~~~fD~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 104 -------------------PSASFDVVLEKGTL----DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp -------------------CSSCEEEEEEESHH----HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred -------------------CCCcccEEEECcch----hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 13579999973210 0000000 0 00 127899999999999999998775
Q ss_pred cC
Q 004164 691 SR 692 (771)
Q Consensus 691 ~~ 692 (771)
..
T Consensus 161 ~~ 162 (215)
T 2pxx_A 161 AA 162 (215)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.3e-07 Score=101.40 Aligned_cols=122 Identities=17% Similarity=0.200 Sum_probs=87.0
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC---------------------------------------C
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------H 92 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~---------------------------------------~ 92 (771)
.+...+..+... .++..|||++||+|.++.+++..+. .
T Consensus 188 ~lAa~ll~l~~~---~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393)
T 3k0b_A 188 TMAAALVLLTSW---HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393)
T ss_dssp HHHHHHHHHSCC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHhCC---CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence 444555555543 5678999999999999988876422 3
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHcccc
Q 004164 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (771)
Q Consensus 93 ~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkp 170 (771)
+|+|+|+++.+++.+++.+...+ ..+++.++|+.+++.+ .+||+|+++-....-.... ..+..+...+.+.||+
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~---~~l~~ly~~lg~~lk~ 340 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDE---EAVRQLYREMGIVYKR 340 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHH---HHHHHHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCc---hhHHHHHHHHHHHHhc
Confidence 59999999999998877765554 3599999999998765 5899999875543221111 1244556666666665
Q ss_pred --CeEEEEEEcC
Q 004164 171 --GGKFVCLTLA 180 (771)
Q Consensus 171 --GG~~ii~~~~ 180 (771)
||.+++++..
T Consensus 341 ~~g~~~~iit~~ 352 (393)
T 3k0b_A 341 MPTWSVYVLTSY 352 (393)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEEECC
Confidence 8888888754
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.6e-07 Score=96.92 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=71.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
+.+...+.+.+.. .++ +|||||||+|.++..|++.+. +|+++|+++.+++.++++.. ..+++++++|+.++++
T Consensus 33 ~~i~~~Iv~~~~~---~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~--~~~v~vi~~D~l~~~~ 105 (271)
T 3fut_A 33 EAHLRRIVEAARP---FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLS--GLPVRLVFQDALLYPW 105 (271)
T ss_dssp HHHHHHHHHHHCC---CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTT--TSSEEEEESCGGGSCG
T ss_pred HHHHHHHHHhcCC---CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC--CCCEEEEECChhhCCh
Confidence 4566667777654 567 999999999999999999975 89999999999998877764 3589999999999887
Q ss_pred CCC-CccEEEeccccc
Q 004164 131 MDE-TFDVILDKGGLD 145 (771)
Q Consensus 131 ~~~-sFDlVi~~~~l~ 145 (771)
++. .||.|+++-..+
T Consensus 106 ~~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 106 EEVPQGSLLVANLPYH 121 (271)
T ss_dssp GGSCTTEEEEEEECSS
T ss_pred hhccCccEEEecCccc
Confidence 653 689888765444
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.6e-06 Score=93.40 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=80.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|.|.++..+.+.+|..+++++|+ |.+++.|++.+.- ...++++++.+|..+ ...
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~p---------- 266 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE---TIP---------- 266 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT---CCC----------
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC---CCC----------
Confidence 4567999999999999999999999999999999 9999999998721 125789999999862 211
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccH---HHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG---SFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~---~fl~~~~~~L~~~Gilv~Nl 689 (771)
..||+|++-- . -..+-++ .+|+.+++.|+|||.|++.-
T Consensus 267 ----------------------~~~D~v~~~~--v---------lh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 267 ----------------------DGADVYLIKH--V---------LHDWDDDDVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp ----------------------SSCSEEEEES--C---------GGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred ----------------------CCceEEEhhh--h---------hccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 2699998821 1 1122223 58999999999999998753
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.6e-07 Score=99.20 Aligned_cols=122 Identities=13% Similarity=0.160 Sum_probs=89.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC---------------------------------------C
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------H 92 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~---------------------------------------~ 92 (771)
.+...+..+... .++..+||++||+|.+..+++..+. .
T Consensus 181 ~LAaall~l~~~---~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 181 NMAAAIILLSNW---FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp HHHHHHHHHTTC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHhCC---CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 444555555544 5678999999999999988776422 2
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHcccc
Q 004164 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (771)
Q Consensus 93 ~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkp 170 (771)
+|+|+|+++.+++.+++.+...+ ..+++.++|+.+++.+ .+||+|+++-....-...+ ..+..+..++.+.||+
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~---~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDD---KAVDILYNEMGETFAP 333 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCH---HHHHHHHHHHHHHHTT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCH---HHHHHHHHHHHHHHhh
Confidence 59999999999998877765554 3599999999998765 5899999986554332221 1255666667777766
Q ss_pred --CeEEEEEEcC
Q 004164 171 --GGKFVCLTLA 180 (771)
Q Consensus 171 --GG~~ii~~~~ 180 (771)
||.+++++..
T Consensus 334 ~~g~~~~iit~~ 345 (384)
T 3ldg_A 334 LKTWSQFILTND 345 (384)
T ss_dssp CTTSEEEEEESC
T ss_pred CCCcEEEEEECC
Confidence 9998888764
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.6e-07 Score=86.67 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=92.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++..+..... ++++||+++.+++.|++. .++++++.+| . ...
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~----~~~----------- 72 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK-----FDSVITLSDP-K----EIP----------- 72 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH-----CTTSEEESSG-G----GSC-----------
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-C----CCC-----------
Confidence 3456899999999999999888873 999999999999999998 3579999998 1 111
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh----
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA---- 695 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~---- 695 (771)
..+||+|+....- ..+ + -...+++.+++.|+|||.+++..+.....
T Consensus 73 --------------------~~~~D~v~~~~~l----~~~----~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~ 122 (170)
T 3i9f_A 73 --------------------DNSVDFILFANSF----HDM----D--DKQHVISEVKRILKDDGRVIIIDWRKENTGIGP 122 (170)
T ss_dssp --------------------TTCEEEEEEESCS----TTC----S--CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS
T ss_pred --------------------CCceEEEEEccch----hcc----c--CHHHHHHHHHHhcCCCCEEEEEEcCccccccCc
Confidence 3679999973211 111 1 13689999999999999999876543211
Q ss_pred ------HHHHHHHHHHHhccceEEeeecCCccEEEEEecCC
Q 004164 696 ------TKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 730 (771)
Q Consensus 696 ------~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~ 730 (771)
..+.+.+.++ =|..+...... .....+++....
T Consensus 123 ~~~~~~~~~~~~~~l~-Gf~~~~~~~~~-~~~~~l~~~~~~ 161 (170)
T 3i9f_A 123 PLSIRMDEKDYMGWFS-NFVVEKRFNPT-PYHFGLVLKRKT 161 (170)
T ss_dssp CGGGCCCHHHHHHHTT-TEEEEEEECSS-TTEEEEEEEECC
T ss_pred hHhhhcCHHHHHHHHh-CcEEEEccCCC-CceEEEEEecCC
Confidence 1233444444 55544444433 344555555444
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-07 Score=95.28 Aligned_cols=109 Identities=12% Similarity=0.151 Sum_probs=83.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++..+...+ ..+|++||+++.+++.|++.+.-. ++++++.+|+.+. .
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~----~----------- 115 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTK----E----------- 115 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTC----C-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccC----C-----------
Confidence 455799999999999999998876 569999999999999999998642 7899999998653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....+||+|+... . ...+ |+. --..+|+.+++.|+|||.+++.....
T Consensus 116 ------------------~~~~~fD~v~~~~--~--l~~~--~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 116 ------------------FPENNFDLIYSRD--A--ILAL--SLE--NKNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp ------------------CCTTCEEEEEEES--C--GGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------------------CCCCcEEEEeHHH--H--HHhc--ChH--HHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 1136799999831 1 0001 111 22679999999999999999876543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.48 E-value=3e-07 Score=101.48 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=88.5
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC---------------------------------------C
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------H 92 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~---------------------------------------~ 92 (771)
.+...+..+... .++..|||+|||+|.++..++..+. .
T Consensus 182 ~lAa~ll~~~~~---~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 258 (385)
T 3ldu_A 182 TLAAGLIYLTPW---KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF 258 (385)
T ss_dssp HHHHHHHHTSCC---CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHhhCC---CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence 344455555543 5678999999999999988876531 3
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHcccc
Q 004164 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (771)
Q Consensus 93 ~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkp 170 (771)
+|+|+|+++.+++.+++.+...+ ..++|.++|+.+++.+ ++||+|+++-....-... ...+..+..++.+.|++
T Consensus 259 ~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~---~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLED---KDSVKQLYKELGYAFRK 334 (385)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHH---HHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCC---HHHHHHHHHHHHHHHhh
Confidence 69999999999998877765444 3699999999998764 589999987665422211 11255667777777776
Q ss_pred --CeEEEEEEcC
Q 004164 171 --GGKFVCLTLA 180 (771)
Q Consensus 171 --GG~~ii~~~~ 180 (771)
||.+++++..
T Consensus 335 ~~g~~~~iit~~ 346 (385)
T 3ldu_A 335 LKNWSYYLITSY 346 (385)
T ss_dssp SBSCEEEEEESC
T ss_pred CCCCEEEEEECC
Confidence 8888888754
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.3e-07 Score=88.73 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=79.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+.+||+||+|.|.++..+... ..++++||+++.+++.|++. .++.++.+|..++.....
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~----------- 111 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV----------- 111 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS-----------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc-----------
Confidence 34589999999999999988887 45899999999999999988 357888899877632211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+.+||+|++...-. . . --..+|+.+++.|+|||.|++.....
T Consensus 112 ------------------~~~~~fD~v~~~~~l~-----~----~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 112 ------------------PVGKDYDLICANFALL-----H----Q--DIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp ------------------CCCCCEEEEEEESCCC-----S----S--CCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ------------------ccCCCccEEEECchhh-----h----h--hHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 1235699999832111 0 1 12689999999999999999977543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.7e-07 Score=93.12 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=80.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..+....+ ++++||++|.+++.|++.+... .++++++.+|..++ .
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~----~------------ 98 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR-ESNVEFIVGDARKL----S------------ 98 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-TCCCEEEECCTTSC----C------------
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-CCCceEEECchhcC----C------------
Confidence 367999999999999999998876 8999999999999999987422 26799999997652 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
....+||+|++.- .-... +.. --..+++.+++.|+|||.+++....
T Consensus 99 -----------------~~~~~~D~v~~~~--~~~~~----~~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 99 -----------------FEDKTFDYVIFID--SIVHF----EPL--ELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp -----------------SCTTCEEEEEEES--CGGGC----CHH--HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----------------CCCCcEEEEEEcC--chHhC----CHH--HHHHHHHHHHHHcCCCcEEEEEecC
Confidence 0135799999841 10000 011 1267999999999999999987643
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.2e-07 Score=102.30 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=96.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||++|+|.|..+..|...++ ...|++||+++.+++.+++.+ |+ .++.++.+|+.++....
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~---~nv~~~~~D~~~~~~~~--------- 184 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI---SNVALTHFDGRVFGAAV--------- 184 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCCSTTHHHHS---------
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCCHHHhhhhc---------
Confidence 457899999999999999999875 469999999999999999886 55 35999999998864322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc-CCcCc-------------ccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC-PAADF-------------VEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~-pp~~f-------------~~~~fl~~~~~~L~~~ 682 (771)
...||+|++|+-.+. .|+.. .|... +...+|+.+.+.|+||
T Consensus 185 -----------------------~~~fD~Il~D~PcSg--~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 239 (479)
T 2frx_A 185 -----------------------PEMFDAILLDAPCSG--EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 (479)
T ss_dssp -----------------------TTCEEEEEEECCCCC--GGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred -----------------------cccCCEEEECCCcCC--cccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 256999999984431 12211 11111 1357899999999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhcc
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFN 709 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 709 (771)
|.|++...+-..+..+.++..+.+-++
T Consensus 240 G~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 240 GTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp EEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred CEEEEecccCCcccCHHHHHHHHHHCC
Confidence 999998766655555556666554444
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-07 Score=96.46 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=94.1
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHh-hcCCCCcEEEEeecCCCCCCCCC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRN-VRDRSDMRWRVMDMTSMQFMDET 134 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~-~~~~~~i~~~~~D~~~l~~~~~s 134 (771)
|.++..+....++.+|||||||+|.++..+++. +...++++|++-.+. +.... ...+.++.+...++....++++.
T Consensus 63 L~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~--~~pi~~~~~g~~ii~~~~~~dv~~l~~~~ 140 (277)
T 3evf_A 63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EKPMNVQSLGWNIITFKDKTDIHRLEPVK 140 (277)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC--CCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc--ccccccCcCCCCeEEEeccceehhcCCCC
Confidence 444443323357889999999999999988876 556788898884221 00000 01122566677776666777889
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccC-eEEEEEEcC--cchhhcchhhhhccCcEEEEeecCCCCCCCC
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTLA--ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEP 211 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpG-G~~ii~~~~--~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~ 211 (771)
||+|++..+.+ ......+......+|+.+.++|+|| |.|++-.+. .+.+ ..+...++..|..-...-| ++...
T Consensus 141 ~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~-~~l~~~lk~~F~~V~~~KP--aSR~~ 216 (277)
T 3evf_A 141 CDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDV-LEKLELLQRRFGGTVIRNP--LSRNS 216 (277)
T ss_dssp CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHH-HHHHHHHHHHHCCEEECCT--TSCTT
T ss_pred ccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccH-HHHHHHHHHhcCCEEEEeC--CCCCC
Confidence 99999987666 2221111111224578899999999 999997776 3433 2344444433333333333 33445
Q ss_pred CCccEEE
Q 004164 212 SLQTFMV 218 (771)
Q Consensus 212 ~l~~f~~ 218 (771)
+.+.|++
T Consensus 217 S~E~Y~V 223 (277)
T 3evf_A 217 THEMYYV 223 (277)
T ss_dssp CCCEEEE
T ss_pred CCceEEE
Confidence 5565655
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.6e-07 Score=92.42 Aligned_cols=105 Identities=13% Similarity=0.092 Sum_probs=80.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
+...+||+||+|+|.++..+... ..+|++||+++.+++.|++... ..+++++.+|..+. .
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~----~----------- 111 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGE---GPDLSFIKGDLSSL----P----------- 111 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTC---BTTEEEEECBTTBC----S-----------
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcc---cCCceEEEcchhcC----C-----------
Confidence 34579999999999999988887 3589999999999999999863 47899999997653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....+||+|++-. . ...+ + -...+|+.+++.|+|||.+++.....
T Consensus 112 ------------------~~~~~fD~v~~~~--~--l~~~----~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 112 ------------------FENEQFEAIMAIN--S--LEWT----E--EPLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp ------------------SCTTCEEEEEEES--C--TTSS----S--CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred ------------------CCCCCccEEEEcC--h--Hhhc----c--CHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 1136799999731 1 1111 1 12589999999999999999987544
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.3e-07 Score=94.28 Aligned_cols=142 Identities=11% Similarity=0.106 Sum_probs=93.2
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
..+||+||+|+|.++..|... |..+|++||+++.++++|++.. |+ .++++++.+|..+.+.
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l--~~~v~~~~~D~~~~~~------------- 187 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEFLEPFK------------- 187 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESSTTGGGG-------------
T ss_pred CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECcchhhcc-------------
Confidence 468999999999999999998 8899999999999999999886 43 4579999999987432
Q ss_pred ccccccccCCCCCCCCCCCCCCCce---eEEEEeCCCCCCCCCC-----CcCCcCcc----cHHHHHHHH-HccCCCcEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARV---DILIIDVDSPDSSSGM-----TCPAADFV----EGSFLLTVK-DALSEQGLF 685 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~y---DvIi~D~~s~d~~~g~-----s~pp~~f~----~~~fl~~~~-~~L~~~Gil 685 (771)
.+| |+|+.+.--......+ ..|...+. ...+++.+. +.|+|||.|
T Consensus 188 ----------------------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l 245 (284)
T 1nv8_A 188 ----------------------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIV 245 (284)
T ss_dssp ----------------------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEE
T ss_pred ----------------------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEE
Confidence 247 9999962100000001 01111111 127999999 999999999
Q ss_pred EEEeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEec
Q 004164 686 IVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 728 (771)
Q Consensus 686 v~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 728 (771)
++-+-... .+. +.+.|......+--.+...++++..
T Consensus 246 ~~e~~~~q---~~~----v~~~~~~~~~~~D~~g~~R~~~~~~ 281 (284)
T 1nv8_A 246 LMEIGEDQ---VEE----LKKIVSDTVFLKDSAGKYRFLLLNR 281 (284)
T ss_dssp EEECCTTC---HHH----HTTTSTTCEEEECTTSSEEEEEEEC
T ss_pred EEEECchH---HHH----HHHHHHhCCeecccCCCceEEEEEE
Confidence 98653222 222 3334433222222234567777654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.3e-07 Score=90.58 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=91.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHH----HHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTML----NLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~----~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
....+||+||+|+|.++..+.... |..+|++||++|.++ +.|++. .++.++++|+...- ...
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r------~nv~~i~~Da~~~~-~~~------ 141 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR------PNIFPLLADARFPQ-SYK------ 141 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC------TTEEEEECCTTCGG-GTT------
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCeEEEEcccccch-hhh------
Confidence 345789999999999999888765 567999999999774 455543 46899999986421 000
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC-
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS- 693 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~- 693 (771)
....+||+|++|+-..+ ...-++..+++.|+|||.|++-+-.++
T Consensus 142 -----------------------~~~~~~D~I~~d~a~~~------------~~~il~~~~~~~LkpGG~lvisik~~~~ 186 (232)
T 3id6_C 142 -----------------------SVVENVDVLYVDIAQPD------------QTDIAIYNAKFFLKVNGDMLLVIKARSI 186 (232)
T ss_dssp -----------------------TTCCCEEEEEECCCCTT------------HHHHHHHHHHHHEEEEEEEEEEEC----
T ss_pred -----------------------ccccceEEEEecCCChh------------HHHHHHHHHHHhCCCCeEEEEEEccCCc
Confidence 01257999999853211 123345666779999999998753332
Q ss_pred ------hhHHHHHHHHHHHh-ccceEEeeec--CCccEEEEEec
Q 004164 694 ------QATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGLS 728 (771)
Q Consensus 694 ------~~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~~ 728 (771)
.+..+.++..|++. |.-+-.+.++ +..+.+++|..
T Consensus 187 d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 187 DVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKY 230 (232)
T ss_dssp ---CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence 12234566777764 6644444442 33566777654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=94.26 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=84.5
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCC-
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMD- 132 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~- 132 (771)
+..++.. .++.+|||+|||+|..+..++.. +.+.|+++|+++.+++.++++....+ .+++++++|+.+++...
T Consensus 94 ~~~~l~~---~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~ 170 (309)
T 2b9e_A 94 PAMLLDP---PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP 170 (309)
T ss_dssp HHHHHCC---CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG
T ss_pred HHHHhCC---CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcccc
Confidence 3444543 57899999999999999999885 34689999999999998887776554 57999999998875332
Q ss_pred --CCccEEEec------cccccccCcc-------cc----hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 133 --ETFDVILDK------GGLDALMEPE-------LG----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 133 --~sFDlVi~~------~~l~~l~~~~-------~~----~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++||.|+.. |++..-++.. .. .....++|..+.++|+ ||+++..+.+
T Consensus 171 ~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 171 RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 579999963 2232211110 00 0124567888888887 9999988765
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6e-07 Score=99.10 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=92.9
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CC-CeeEEEcchHHHHHhhccCCcccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DK-SLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-~~-r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+||++|+|+|.++..+.... ..+|++||+++.+++.|++.+.... ++ +++++.+|+.+++.....
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~---------- 281 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR---------- 281 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH----------
T ss_pred CCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH----------
Confidence 4689999999999999888753 3489999999999999999873211 23 799999999999876531
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc--cHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV--EGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~--~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
.+.+||+|++|.-....+.+. ..... -.+++..+.+.|+|||++++...+.... .
T Consensus 282 -------------------~~~~fD~Ii~DPP~~~~~~~~---~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-~ 338 (385)
T 2b78_A 282 -------------------HHLTYDIIIIDPPSFARNKKE---VFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-V 338 (385)
T ss_dssp -------------------TTCCEEEEEECCCCC-----C---CCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-H
T ss_pred -------------------hCCCccEEEECCCCCCCChhh---HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-H
Confidence 125799999975331100010 01111 1346788899999999999877554432 3
Q ss_pred HHHHHHHHHhccc
Q 004164 698 DMVISRMKMVFNH 710 (771)
Q Consensus 698 ~~v~~~l~~vF~~ 710 (771)
+.+.+.+++.+..
T Consensus 339 ~~~~~~i~~~~~~ 351 (385)
T 2b78_A 339 SQFKKQIEKGFGK 351 (385)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-06 Score=90.70 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=81.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|.++..+.... ..+|++||+++.+++.|++.+ |+ .++++++.+|+.+. .
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~----~-------- 124 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGL--ANRVTFSYADAMDL----P-------- 124 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----C--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECccccC----C--------
Confidence 355799999999999999998876 469999999999999999887 43 45799999998652 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
..+.+||+|+.- .....+ +. ...+|+.+++.|+|||.+++....
T Consensus 125 ---------------------~~~~~fD~v~~~----~~l~~~--~~----~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 125 ---------------------FEDASFDAVWAL----ESLHHM--PD----RGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp ---------------------SCTTCEEEEEEE----SCTTTS--SC----HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ---------------------CCCCCccEEEEe----chhhhC--CC----HHHHHHHHHHHcCCCeEEEEEEee
Confidence 113679999972 111111 11 278999999999999999986544
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-07 Score=93.77 Aligned_cols=139 Identities=19% Similarity=0.179 Sum_probs=99.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|.|.++..|....|..+|++||+||..++.|++.. |+ .++++++.+|+.+.+..
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl--~~~I~~~~gD~l~~~~~----------- 87 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL--TSKIDVRLANGLSAFEE----------- 87 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG-----------
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhhcccc-----------
Confidence 457899999999999999999988789999999999999999886 54 56899999999886422
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
+.+||+|++ .||- .-+-.++|......|+++|.||+.-... .
T Consensus 88 ----------------------~~~~D~Ivi--------aGmG----g~lI~~IL~~~~~~l~~~~~lIlqp~~~----~ 129 (230)
T 3lec_A 88 ----------------------ADNIDTITI--------CGMG----GRLIADILNNDIDKLQHVKTLVLQPNNR----E 129 (230)
T ss_dssp ----------------------GGCCCEEEE--------EEEC----HHHHHHHHHHTGGGGTTCCEEEEEESSC----H
T ss_pred ----------------------ccccCEEEE--------eCCc----hHHHHHHHHHHHHHhCcCCEEEEECCCC----h
Confidence 136999987 1221 1134778999999999999999876433 2
Q ss_pred HHHHHHHHHh-ccceEEeeecC--CccEEEEEecCC
Q 004164 698 DMVISRMKMV-FNHLFCLQLEE--DVNLVLFGLSSE 730 (771)
Q Consensus 698 ~~v~~~l~~v-F~~v~~~~~~~--~~N~Vl~a~~~~ 730 (771)
+.+...|.+. |.-+-..-+.+ ..=+|+.+.+.+
T Consensus 130 ~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~~~ 165 (230)
T 3lec_A 130 DDLRKWLAANDFEIVAEDILTENDKRYEILVVKHGH 165 (230)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEECC
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeCC
Confidence 3344445444 44222221222 234577776654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.4e-06 Score=88.65 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=84.8
Q ss_pred CCCcEEEEeccc---cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH--HHhhccCCcccc
Q 004164 541 KSVKAVVIGLGA---GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDE 615 (771)
Q Consensus 541 ~~~~vLviGlG~---G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~--l~~~~~~~~~~~ 615 (771)
...+||+||+|. |.+...+....|..+|++||+||.|++.|++.+. ..++++++.+|..+. +-......
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~---- 150 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--KDPNTAVFTADVRDPEYILNHPDVR---- 150 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--TCTTEEEEECCTTCHHHHHHSHHHH----
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--CCCCeEEEEeeCCCchhhhccchhh----
Confidence 346899999999 9888888888898999999999999999999884 356899999999753 21100000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
. .....+||+|++- .. +..-+.. --..+|+.+++.|+|||.|++.....+
T Consensus 151 -~-------------------~~d~~~~d~v~~~--~v-----lh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 151 -R-------------------MIDFSRPAAIMLV--GM-----LHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp -H-------------------HCCTTSCCEEEET--TT-----GGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred -c-------------------cCCCCCCEEEEEe--ch-----hhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 0 0001469999871 11 1100111 236899999999999999998877654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.8e-07 Score=93.23 Aligned_cols=76 Identities=8% Similarity=0.176 Sum_probs=62.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
..+...+.+.+.. .++.+|||+|||+|.++..|++.|..+|+++|+++.+++.++++ ...+++++++|+.++++
T Consensus 17 ~~i~~~iv~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~~~~v~~i~~D~~~~~~ 90 (249)
T 3ftd_A 17 EGVLKKIAEELNI---EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---GDERLEVINEDASKFPF 90 (249)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---CCTTEEEECSCTTTCCG
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---cCCCeEEEEcchhhCCh
Confidence 4555666666654 57889999999999999999998756999999999999877554 34679999999999887
Q ss_pred CC
Q 004164 131 MD 132 (771)
Q Consensus 131 ~~ 132 (771)
++
T Consensus 91 ~~ 92 (249)
T 3ftd_A 91 CS 92 (249)
T ss_dssp GG
T ss_pred hH
Confidence 64
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.3e-07 Score=93.46 Aligned_cols=103 Identities=15% Similarity=0.243 Sum_probs=79.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..+.. +..+|++||+++.+++.|++.+ ++++++++|+.++ .
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~----------- 113 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNF----R----------- 113 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTC----C-----------
T ss_pred CCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhC----C-----------
Confidence 3457899999999999998888 6679999999999999999886 4688999988652 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
. ...||+|++.. . ...+. --..+|+.+++.|+|||.+++......
T Consensus 114 ------------------~-~~~fD~v~~~~--~--l~~~~------d~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 114 ------------------V-DKPLDAVFSNA--M--LHWVK------EPEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp ------------------C-SSCEEEEEEES--C--GGGCS------CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred ------------------c-CCCcCEEEEcc--h--hhhCc------CHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 0 25799999832 1 00010 125799999999999999999876553
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.3e-07 Score=91.62 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=78.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..|....+ ++++||+++.+++.|++.+ ++++++.+|..++ .
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~----------- 96 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDF----R----------- 96 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTC----C-----------
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHc----c-----------
Confidence 3457899999999999998888865 8999999999999999986 3589999988653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
. ...||+|++-.+.-. .+. .+. --..+|+.+++.|+|||.+++..+..
T Consensus 97 ------------------~-~~~~D~v~~~~~~~~---~~~-~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 97 ------------------L-GRKFSAVVSMFSSVG---YLK-TTE--ELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp ------------------C-SSCEEEEEECTTGGG---GCC-SHH--HHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred ------------------c-CCCCcEEEEcCchHh---hcC-CHH--HHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 0 257999995211100 000 001 12679999999999999999876443
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-07 Score=97.78 Aligned_cols=110 Identities=20% Similarity=0.212 Sum_probs=82.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~--~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|.++..|...+ +..+|++||+++.+++.|++.+... ..++++++++|+.++-....
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-------- 106 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGA-------- 106 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCT--------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccc--------
Confidence 356799999999999999999887 7889999999999999999986321 24689999999865411100
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
......+||+|++.. . -..+--..+|+.+++.|+|||.|++
T Consensus 107 -------------------~~~~~~~fD~V~~~~--~---------l~~~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 107 -------------------DSVDKQKIDMITAVE--C---------AHWFDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp -------------------TTTTSSCEEEEEEES--C---------GGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------ccccCCCeeEEeHhh--H---------HHHhCHHHHHHHHHHhcCCCcEEEE
Confidence 000125799999832 1 1112337899999999999999998
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-07 Score=94.68 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=79.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-----CCCcEEEEEcCHHHHHHHHhhcCCCC-----CCCeeEEEcchHHHHHhhccC
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-----PFVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKSS 610 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-----p~~~i~~VEiD~~v~~vA~~~Fg~~~-----~~r~~v~i~Dg~~~l~~~~~~ 610 (771)
...+||+||+|+|.++..+.... |..+|++||+++.+++.|++.+.-.. .++++++.+|+.+.......
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~- 158 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK- 158 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH-
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc-
Confidence 45789999999999999888876 45699999999999999999873111 35799999999874211000
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 611 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
....||+|+++.... . +++.+.+.|+|||.+++.+.
T Consensus 159 ----------------------------~~~~fD~I~~~~~~~-----------~-----~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ----------------------------ELGLFDAIHVGASAS-----------E-----LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp ----------------------------HHCCEEEEEECSBBS-----------S-----CCHHHHHHEEEEEEEEEEEE
T ss_pred ----------------------------cCCCcCEEEECCchH-----------H-----HHHHHHHhcCCCcEEEEEEc
Confidence 014699999853211 1 24788999999999999886
Q ss_pred c
Q 004164 691 S 691 (771)
Q Consensus 691 ~ 691 (771)
.
T Consensus 195 ~ 195 (227)
T 2pbf_A 195 E 195 (227)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.5e-07 Score=96.25 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=82.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|.|.++..+...+ ..+|++||+++.+++.|++.+.- ...++++++.+|..++ .
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---------- 153 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----A---------- 153 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----C----------
T ss_pred CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC----C----------
Confidence 345689999999999998888876 35999999999999999998721 1246799999997543 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCCh
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 694 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 694 (771)
..||+|+..- . ...+ |+. --..+|+.+.+.|+|||.+++..+....
T Consensus 154 ----------------------~~fD~v~~~~--~--l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 154 ----------------------EPVDRIVSIE--A--FEHF--GHE--NYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp ----------------------CCCSEEEEES--C--GGGT--CGG--GHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred ----------------------CCcCEEEEeC--h--HHhc--CHH--HHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 4699999731 0 0000 111 1278999999999999999998766543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-06 Score=96.82 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=80.1
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
..+||++|+|+|..+..+.... ..|++||+++.+++.|++.+ |+. .+++.+|+.+++....
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~----~~~~~~D~~~~l~~~~---------- 278 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLR----VDIRHGEALPTLRGLE---------- 278 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCC----CEEEESCHHHHHHTCC----------
T ss_pred CCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCC----CcEEEccHHHHHHHhc----------
Confidence 5789999999999999888863 45999999999999999987 442 2567999999987643
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-----ccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
+. ||+|++|.-.-.. ..... .-.++++.+.+.|+|||+|++-..+..
T Consensus 279 ---------------------~~-fD~Ii~dpP~f~~------~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 279 ---------------------GP-FHHVLLDPPTLVK------RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp ---------------------CC-EEEEEECCCCCCS------SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ---------------------CC-CCEEEECCCcCCC------CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 24 9999997422100 01111 114788999999999999996554443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-06 Score=96.62 Aligned_cols=115 Identities=18% Similarity=0.215 Sum_probs=85.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|+|.++..+... ..+|++||+++.+++.|++.+....-+.++++.+|+.+++.....
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~------------ 275 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK------------ 275 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH------------
T ss_pred CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHh------------
Confidence 368999999999999988887 458999999999999999987332112399999999999876531
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-----ccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
.+.+||+|++|.-.-..+ .... .-.+++..+.+.|+|||++++...+..
T Consensus 276 -----------------~~~~fD~Ii~dpP~~~~~------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 276 -----------------EGERFDLVVLDPPAFAKG------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp -----------------TTCCEEEEEECCCCSCCS------TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred -----------------cCCCeeEEEECCCCCCCC------hhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 125799999965221000 1111 125688999999999999998765543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=7.9e-07 Score=92.18 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=77.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
+.+.+||+||+|+|.++..|.... .+|++||+++.+++.|++.+. +++++.+|..++ .
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~----~----------- 106 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDF----S----------- 106 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTC----C-----------
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHC----C-----------
Confidence 345799999999999999888875 489999999999999999864 689999998663 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc----ccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f----~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
. ..+||+|++..+. -..+ --..+|+.+++.|+|||.|++..
T Consensus 107 ------------------~-~~~fD~v~~~~~~----------l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 107 ------------------L-GRRFSAVTCMFSS----------IGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp ------------------C-SCCEEEEEECTTG----------GGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred ------------------c-cCCcCEEEEcCch----------hhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 0 2679999983211 1112 12478999999999999999863
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.43 E-value=3e-07 Score=93.68 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=79.8
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
+.+||+||+|+|.++..|.. +..+|++||+++.+++.|++.+.- ....+++++.+|..++.
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------------- 128 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR---------------- 128 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC----------------
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC----------------
Confidence 35999999999999888866 456899999999999999999853 12457999999987631
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....||+|+.-. . ...+ |+. .-..+++.+++.|+|||.|++.....
T Consensus 129 ------------------~~~~fD~v~~~~--~--l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 129 ------------------PTELFDLIFDYV--F--FCAI--EPE--MRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp ------------------CSSCEEEEEEES--S--TTTS--CGG--GHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred ------------------CCCCeeEEEECh--h--hhcC--CHH--HHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 124799999721 1 1111 111 23689999999999999999866543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.3e-07 Score=88.40 Aligned_cols=120 Identities=14% Similarity=0.098 Sum_probs=87.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|.|.++..+... ..+|++||+++.+++.|++.+ +++++.+|..+.-
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~---------------- 98 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLD---------------- 98 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC----------------
T ss_pred CCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCC----------------
Confidence 4578999999999999988887 359999999999999999987 3567778875431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc---ccHHHHHHHHHccCCCcEEEEEeccCChh--
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF---VEGSFLLTVKDALSEQGLFIVNLVSRSQA-- 695 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f---~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~-- 695 (771)
...+||+|++.. . -..+ --..+|+.+++.|+|||.+++........
T Consensus 99 ------------------~~~~fD~v~~~~--~---------l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 149 (211)
T 3e23_A 99 ------------------AIDAYDAVWAHA--C---------LLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR 149 (211)
T ss_dssp ------------------CCSCEEEEEECS--C---------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE
T ss_pred ------------------CCCcEEEEEecC--c---------hhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc
Confidence 136799999821 1 1111 12579999999999999999987544321
Q ss_pred ----------HHHHHHHHHHHh--ccceEE
Q 004164 696 ----------TKDMVISRMKMV--FNHLFC 713 (771)
Q Consensus 696 ----------~~~~v~~~l~~v--F~~v~~ 713 (771)
..+.+.+.+++. |..+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 150 DKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp CTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred cccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 235566677766 765443
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.6e-07 Score=95.41 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=83.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
..+.+||+||+|+|.++..+...+|. .+|++||++|.+++.|++.+.- ...+++++++|+.++ .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~v~~~~~d~~~~----~---------- 85 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-LPYDSEFLEGDATEI----E---------- 85 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS-SSSEEEEEESCTTTC----C----------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh-cCCceEEEEcchhhc----C----------
Confidence 45689999999999999999999884 7999999999999999998743 123799999998753 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
. ..+||+|++...-. .+ +. ...+|+.+++.|+|||.+++....
T Consensus 86 -------------------~-~~~fD~v~~~~~l~----~~----~~--~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 86 -------------------L-NDKYDIAICHAFLL----HM----TT--PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp -------------------C-SSCEEEEEEESCGG----GC----SS--HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -------------------c-CCCeeEEEECChhh----cC----CC--HHHHHHHHHHHcCCCCEEEEEecc
Confidence 0 25799999843111 01 11 168999999999999999976543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.9e-07 Score=101.22 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=97.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||++|+|.|..+..|...+++ .+|+++|+++..++.+++.+ |+ ++++++.+|+.++....
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~--------- 326 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI---KIVKPLVKDARKAPEII--------- 326 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCTTCCSSSS---------
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEEEcChhhcchhh---------
Confidence 4468999999999999999998876 79999999999999999886 54 36899999986541111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~~ 682 (771)
.+..||+|++|+-.+. .|+....+.. +...+|+.+.+.|+||
T Consensus 327 ----------------------~~~~fD~Vl~D~Pcsg--~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 382 (450)
T 2yxl_A 327 ----------------------GEEVADKVLLDAPCTS--SGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG 382 (450)
T ss_dssp ----------------------CSSCEEEEEEECCCCC--GGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred ----------------------ccCCCCEEEEcCCCCC--CeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1256999999874331 1221111111 1267899999999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhcc
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFN 709 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 709 (771)
|.|++-..+..++..+.++..+.+-++
T Consensus 383 G~lvy~tcs~~~~ene~~v~~~l~~~~ 409 (450)
T 2yxl_A 383 GRLLYTTCSIFKEENEKNIRWFLNVHP 409 (450)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHCS
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 999988777776666666766555544
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=86.21 Aligned_cols=146 Identities=12% Similarity=0.088 Sum_probs=95.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH-----HHhhccCCcccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF-----VREMKSSSATDE 615 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~-----l~~~~~~~~~~~ 615 (771)
...+||+||+|+|.++..+.+. ..+|++||++|.. ..++++++.+|..+. +.+.-.
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~------ 85 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALR------ 85 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHH------
T ss_pred CCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhh------
Confidence 4578999999999999999888 5699999999851 135799999997542 111100
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc---CcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA---DFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~---~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.....+||+|+.|.... ..|...... .-+-...++.+.+.|+|||.|++-+...
T Consensus 86 ---------------------~~~~~~~D~Vlsd~~~~--~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 86 ---------------------EEGIEKVDDVVSDAMAK--VSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp ---------------------HHTCSSEEEEEECCCCC--CCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ---------------------cccCCcceEEecCCCcC--CCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 00013799999986321 112110000 0012467888999999999999988654
Q ss_pred ChhHHHHHHHHHHHhccceEEeeec----CCccEEEEEecCC
Q 004164 693 SQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLSSE 730 (771)
Q Consensus 693 ~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~~~~ 730 (771)
.. ...++..++..|..|...+.. +.....++|.+-.
T Consensus 143 ~~--~~~~~~~l~~~F~~v~~~kP~asR~~s~E~y~v~~~~~ 182 (191)
T 3dou_A 143 DM--TNDFIAIWRKNFSSYKISKPPASRGSSSEIYIMFFGFK 182 (191)
T ss_dssp TH--HHHHHHHHGGGEEEEEEECC------CCEEEEEEEEEC
T ss_pred CC--HHHHHHHHHHhcCEEEEECCCCccCCCceEEEEEeeec
Confidence 33 356788899999998877642 2344566676543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-06 Score=90.24 Aligned_cols=112 Identities=13% Similarity=0.211 Sum_probs=81.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..|....+ +|++||+++.+++.|++.+. ..+++++++|..+.-....-
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~---------- 119 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQI---------- 119 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHH----------
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc---ccCceEEECccccccccccc----------
Confidence 3457899999999999999999876 89999999999999999984 35899999999875332110
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
. ....||+|+....-.. + ++.. -..+|+.+++.|+|||.+++.-+..
T Consensus 120 ~------------------~~~~~d~v~~~~~~~~----~--~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 120 H------------------SEIGDANIYMRTGFHH----I--PVEK--RELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp H------------------HHHCSCEEEEESSSTT----S--CGGG--HHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred c------------------cccCccEEEEcchhhc----C--CHHH--HHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 0 0124899998531110 0 1111 2689999999999999876654444
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.8e-07 Score=92.04 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=78.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..+....+ ++++||+++.+++.|++.+.-..-++++++.+|+.++ .
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~----------- 82 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL----P----------- 82 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC----C-----------
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC----C-----------
Confidence 4567999999999999999988864 8999999999999999886211114699999987542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+..||+|+...-- ..+ . --..+|+.+++.|+|||.+++-.
T Consensus 83 ------------------~~~~~fD~v~~~~~l----~~~----~--~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 83 ------------------FPDDSFDIITCRYAA----HHF----S--DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp ------------------SCTTCEEEEEEESCG----GGC----S--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCcEEEEEECCch----hhc----c--CHHHHHHHHHHHcCCCcEEEEEE
Confidence 113679999984211 001 0 12689999999999999998743
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=96.94 Aligned_cols=117 Identities=8% Similarity=0.105 Sum_probs=86.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||++|+|+|.++..+... +..+|++||+++.+++.|++.+.... +++++++.+|+.+++.....
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~---------- 285 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK---------- 285 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH----------
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh----------
Confidence 4578999999999999988886 44589999999999999999883211 23799999999999876431
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-----ccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
.+.+||+|++|.-.- +. ..... .-.+++..+.+.|+|||++++...+..
T Consensus 286 -------------------~~~~fD~Vi~dpP~~----~~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 286 -------------------KGEKFDIVVLDPPAF----VQ--HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp -------------------TTCCEEEEEECCCCS----CS--SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred -------------------hCCCCCEEEECCCCC----CC--CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 125799999964211 00 01111 135688999999999999887765543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.41 E-value=5.9e-07 Score=92.71 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=79.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..+... ..+|++||+++.+++.|++.+ -...++++++++|+.++ .
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~----~----------- 99 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAI----P----------- 99 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSC----C-----------
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccC----C-----------
Confidence 34578999999999998888876 368999999999999999998 22356899999998542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+..||+|++.. . ...+ + -...+|+.+++.|+|||.+++..
T Consensus 100 ------------------~~~~~fD~v~~~~--~--l~~~---~---~~~~~l~~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 100 ------------------LPDESVHGVIVVH--L--WHLV---P---DWPKVLAEAIRVLKPGGALLEGW 141 (263)
T ss_dssp ------------------SCTTCEEEEEEES--C--GGGC---T---THHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCCeeEEEECC--c--hhhc---C---CHHHHHHHHHHHCCCCcEEEEEe
Confidence 1136799999831 1 0001 1 12689999999999999999873
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-06 Score=94.03 Aligned_cols=102 Identities=16% Similarity=0.079 Sum_probs=79.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..+.+.+|..+++++|+ |.+++.|++++.- ...++++++.+|..+ ...
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~p----------- 233 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD---PLP----------- 233 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS---CCC-----------
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC---CCC-----------
Confidence 457899999999999999999999999999999 9999999998721 124789999999752 211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..||+|++- .. -..+-+ ..+|+++++.|+|||.+++.-
T Consensus 234 ---------------------~~~D~v~~~--~v---------lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 274 (332)
T 3i53_A 234 ---------------------AGAGGYVLS--AV---------LHDWDDLSAVAILRRCAEAAGSGGVVLVIE 274 (332)
T ss_dssp ---------------------CSCSEEEEE--SC---------GGGSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ---------------------CCCcEEEEe--hh---------hccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 269999981 11 112222 579999999999999998754
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-06 Score=92.60 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=80.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|.|.++..+...++. +|++||+++.+++.|++.+.- ...++++++.+|..++ .
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~---------- 127 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----D---------- 127 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----C----------
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----C----------
Confidence 34568999999999999988866554 999999999999999998621 1246899999997432 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
.+||+|+..- . ...+ ++. --..+|+.+++.|+|||.+++......
T Consensus 128 ----------------------~~fD~v~~~~--~--l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 128 ----------------------EPVDRIVSIG--A--FEHF--GHE--RYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp ----------------------CCCSEEEEES--C--GGGT--CTT--THHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred ----------------------CCeeEEEEeC--c--hhhc--ChH--HHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 4699999731 0 0000 111 127899999999999999998776543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.40 E-value=8.8e-07 Score=90.97 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=79.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..|.... ..+|++||+++.+++.|++.+.- .++++++.+|..++ .
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~----~----------- 153 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMETA----T----------- 153 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGC----C-----------
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc--CCceEEEEccHHHC----C-----------
Confidence 356799999999999998887775 45799999999999999999853 26799999998653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.....||+|++-- . ...+ |+. --..+|+.+++.|+|||.|++-.
T Consensus 154 ------------------~~~~~fD~v~~~~--~--l~~~--~~~--~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 154 ------------------LPPNTYDLIVIQW--T--AIYL--TDA--DFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp ------------------CCSSCEEEEEEES--C--GGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCCeEEEEEcc--h--hhhC--CHH--HHHHHHHHHHHhcCCCeEEEEEe
Confidence 1135799999721 1 0000 001 12689999999999999999855
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.1e-07 Score=96.42 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=81.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC---CCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ---DKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~---~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
.+.+||+||+|+|.++..|... ..+|++||+++.+++.|++.+.-.. ..+++++.+|..++ .
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~----~--------- 146 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF----A--------- 146 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC----C---------
T ss_pred CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC----C---------
Confidence 3459999999999998888887 3689999999999999999874211 16799999998753 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc----HHHHHHHHHccCCCcEEEEEeccCC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
....||+|++... ..++++ ..+|+.+++.|+|||.|++.+....
T Consensus 147 ---------------------~~~~fD~v~~~~~-----------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 147 ---------------------LDKRFGTVVISSG-----------SINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp ---------------------CSCCEEEEEECHH-----------HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred ---------------------cCCCcCEEEECCc-----------ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 0267999986211 111222 7899999999999999999887654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-06 Score=89.74 Aligned_cols=103 Identities=19% Similarity=0.166 Sum_probs=79.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..+.... ..++++||+++.+++.|++.+.- .+++++.+|..+.- .
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~--~------------- 103 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLH--L------------- 103 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCC--C-------------
T ss_pred CCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhcc--C-------------
Confidence 45789999999999999888873 23899999999999999998753 47999999986531 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
....||+|++.. . ...+ + --..+|+.+++.|+|||.+++...
T Consensus 104 ------------------~~~~fD~v~~~~--~--l~~~----~--~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 104 ------------------PQDSFDLAYSSL--A--LHYV----E--DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp ------------------CTTCEEEEEEES--C--GGGC----S--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------------------CCCCceEEEEec--c--cccc----c--hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 136799999832 1 0111 1 136899999999999999998763
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.1e-07 Score=98.18 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=83.0
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC---------------CCCCeeEEEcchHHHHHh
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------------QDKSLKVHITDGIKFVRE 606 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~---------------~~~r~~v~i~Dg~~~l~~ 606 (771)
..+||++|+|+|.++..+....+..+|++||+|+..++.|++..... .-+.++++.+|+.+++..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 46899999999999999998877778999999999999999876221 112399999999999876
Q ss_pred hccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 607 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
.. .+||+|++|.+.. ..+|++.+.+.|+++|++.
T Consensus 128 ~~--------------------------------~~fD~I~lDP~~~--------------~~~~l~~a~~~lk~gG~l~ 161 (378)
T 2dul_A 128 RH--------------------------------RYFHFIDLDPFGS--------------PMEFLDTALRSAKRRGILG 161 (378)
T ss_dssp ST--------------------------------TCEEEEEECCSSC--------------CHHHHHHHHHHEEEEEEEE
T ss_pred cc--------------------------------CCCCEEEeCCCCC--------------HHHHHHHHHHhcCCCCEEE
Confidence 42 4699999864321 1689999999999999988
Q ss_pred EEe
Q 004164 687 VNL 689 (771)
Q Consensus 687 ~Nl 689 (771)
+..
T Consensus 162 vt~ 164 (378)
T 2dul_A 162 VTA 164 (378)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-06 Score=88.47 Aligned_cols=108 Identities=10% Similarity=0.163 Sum_probs=81.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-----CCCCeeEEEcchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----QDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-----~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
....+||+||+|.|.++..+... ..+|++||+++.+++.|++.+.-. ...+++++.+|+.++ .
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~------ 96 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL----S------ 96 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC----C------
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc----C------
Confidence 34578999999999999988887 469999999999999999987421 124689999987543 1
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc----HHHHHHHHHccCCCcEEEEEec
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.....||+|++.. . -..+.+ ..+|+.+++.|+|||.+++...
T Consensus 97 -----------------------~~~~~~D~v~~~~--~---------l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 97 -----------------------FHDSSFDFAVMQA--F---------LTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp -----------------------SCTTCEEEEEEES--C---------GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----------------------CCCCceeEEEEcc--h---------hhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 1136799999831 1 111222 2799999999999999998766
Q ss_pred cCC
Q 004164 691 SRS 693 (771)
Q Consensus 691 ~~~ 693 (771)
.+.
T Consensus 143 ~~~ 145 (235)
T 3sm3_A 143 GQN 145 (235)
T ss_dssp BCC
T ss_pred Ccc
Confidence 553
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-06 Score=83.65 Aligned_cols=137 Identities=12% Similarity=0.160 Sum_probs=89.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..|.... +|++||+++.+++. .++++++.+|+.+.+.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~--------------- 75 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---------HRGGNLVRADLLCSIN--------------- 75 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---------CSSSCEEECSTTTTBC---------------
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---------ccCCeEEECChhhhcc---------------
Confidence 34699999999999999998876 89999999999988 3578999999876311
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC---CcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP---AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p---p~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
..+||+|+.+. + ......+ ...--..++++.+.+.| |||.+++-..... ..
T Consensus 76 -------------------~~~fD~i~~n~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~--~~ 129 (170)
T 3q87_B 76 -------------------QESVDVVVFNP--P--YVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN--RP 129 (170)
T ss_dssp -------------------GGGCSEEEECC--C--CBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG--CH
T ss_pred -------------------cCCCCEEEECC--C--CccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC--CH
Confidence 25799999943 1 0000000 00011256888888888 9999998654332 23
Q ss_pred HHHHHHHHHh-ccceEEeeecCCccEEEEEecCC
Q 004164 698 DMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 730 (771)
Q Consensus 698 ~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~~~ 730 (771)
+.+.+.+++. |..+...........++.....+
T Consensus 130 ~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~~~ 163 (170)
T 3q87_B 130 KEVLARLEERGYGTRILKVRKILGETVYIIKGEK 163 (170)
T ss_dssp HHHHHHHHHTTCEEEEEEEEECSSSEEEEEEEEC
T ss_pred HHHHHHHHHCCCcEEEEEeeccCCceEEEEEEec
Confidence 3455666554 66544444344444555544433
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=98.27 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=96.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||++|+|.|..+..+...++..+|+++|+++..++.+++.+ |+ +++++.+|+.++.....
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~----~~~~~~~D~~~~~~~~~--------- 312 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM----KATVKQGDGRYPSQWCG--------- 312 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC----CCEEEECCTTCTHHHHT---------
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC----CeEEEeCchhhchhhcc---------
Confidence 456899999999999999999988789999999999999999886 43 37899999987643322
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCCCc
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQG 683 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~~G 683 (771)
+..||+|++|+-.+. .|+....+.. +...+|+.+.+.|+|||
T Consensus 313 ----------------------~~~fD~Vl~D~Pcsg--~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG 368 (429)
T 1sqg_A 313 ----------------------EQQFDRILLDAPCSA--TGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGG 368 (429)
T ss_dssp ----------------------TCCEEEEEEECCCCC--GGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred ----------------------cCCCCEEEEeCCCCc--ccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 257999999874331 1221111111 12588999999999999
Q ss_pred EEEEEeccCChhHHHHHHHHHHHhcc
Q 004164 684 LFIVNLVSRSQATKDMVISRMKMVFN 709 (771)
Q Consensus 684 ilv~Nl~~~~~~~~~~v~~~l~~vF~ 709 (771)
.+++...+-.+...+.++..+-+..+
T Consensus 369 ~lvystcs~~~~ene~~v~~~l~~~~ 394 (429)
T 1sqg_A 369 TLVYATCSVLPEENSLQIKAFLQRTA 394 (429)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred EEEEEECCCChhhHHHHHHHHHHhCC
Confidence 99998766666555556655544444
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-06 Score=84.96 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=92.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC--CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP--FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p--~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
...+||+||+|+|.++..|...+| ..+|++||++|.. . .++++++.+|..+.....- ....-
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~---~~~v~~~~~d~~~~~~~~~-----~~~~~ 85 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------P---IPNVYFIQGEIGKDNMNNI-----KNINY 85 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------C---CTTCEEEECCTTTTSSCCC----------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------C---CCCceEEEccccchhhhhh-----ccccc
Confidence 346899999999999999999987 6799999999931 1 2568889998865310000 00000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-----cHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-----~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
+...... ........ ......||+|+.|..-. ..|.. ..... ...+++.+.+.|+|||.|++.++...
T Consensus 86 i~~~~~~-~~~~~~~~--~~~~~~fD~v~~~~~~~--~~g~~--~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 158 (201)
T 2plw_A 86 IDNMNNN-SVDYKLKE--ILQDKKIDIILSDAAVP--CIGNK--IDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS 158 (201)
T ss_dssp ------C-HHHHHHHH--HHTTCCEEEEEECCCCC--CCSCH--HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred cccccch-hhHHHHHh--hcCCCcccEEEeCCCcC--CCCCc--ccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence 0000000 00000000 00135799999965211 11110 00000 12478899999999999999776533
Q ss_pred hhHHHHHHHHHHHhccceEEeeec----CCccEEEEEec
Q 004164 694 QATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLS 728 (771)
Q Consensus 694 ~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~~ 728 (771)
. ...+...++..|..+..++.. ......++|.+
T Consensus 159 ~--~~~l~~~l~~~f~~v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 159 Q--TNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp T--HHHHHHHHHTTEEEEEECCCC-----CCEEEEEEEE
T ss_pred C--HHHHHHHHHHHHheEEEECCcccCCcCceEEEEEec
Confidence 2 345677888889877665432 22334566654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.4e-07 Score=92.75 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=77.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCC-----CCCCeeEEEcchHHHHHhhccCCccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT-----QDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~-----~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
...+||+||+|+|.++..+...+ +..+|++||+++.+++.|++.+.-. ..++++++.+|+.....
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------- 147 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA--------- 147 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG---------
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc---------
Confidence 45689999999999999888775 5569999999999999999876210 13579999999863211
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....||+|+++... .. +++.+.+.|+|||.+++.+.+.
T Consensus 148 ------------------------~~~~fD~i~~~~~~-----------~~-----~~~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 148 ------------------------EEAPYDAIHVGAAA-----------PV-----VPQALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp ------------------------GGCCEEEEEECSBB-----------SS-----CCHHHHHTEEEEEEEEEEESCT
T ss_pred ------------------------cCCCcCEEEECCch-----------HH-----HHHHHHHhcCCCcEEEEEEecC
Confidence 02469999985422 12 2468889999999999987654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-07 Score=95.13 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=81.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|.++..|...+ ..+|++||+++.+++.|++.+ |+ .++++++.+|+.+. .
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----~-------- 180 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRI--DDHVRSRVCNMLDT----P-------- 180 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----C--------
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCceEEEECChhcC----C--------
Confidence 456789999999999999888875 469999999999999999986 43 45899999998542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+..||+|+.-- . + ..+--..+|+.+.+.|+|||.+++-....
T Consensus 181 ---------------------~~~~~fD~V~~~~--~-----l----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 181 ---------------------FDKGAVTASWNNE--S-----T----MYVDLHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp ---------------------CCTTCEEEEEEES--C-----G----GGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEeEEEECC--c-----h----hhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence 1136799999721 1 1 11115889999999999999999765443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.37 E-value=6.7e-07 Score=89.73 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=77.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++..+.... |..+|++||+++.+++.|++.+.-..-++++++.+|+...+..
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------------ 143 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP------------ 143 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG------------
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC------------
Confidence 345689999999999988888876 5579999999999999999987211113599999998432111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
...||+|+++..-. .+. +.+.+.|+|||.+++.+...
T Consensus 144 ---------------------~~~fD~v~~~~~~~-----------~~~-----~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 144 ---------------------LAPYDRIYTTAAGP-----------KIP-----EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp ---------------------GCCEEEEEESSBBS-----------SCC-----HHHHHTEEEEEEEEEEESSS
T ss_pred ---------------------CCCeeEEEECCchH-----------HHH-----HHHHHHcCCCcEEEEEECCC
Confidence 24699999843111 111 48899999999999988654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.9e-07 Score=89.74 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=77.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..+ +..++++||+++.+++.|++.+ ++++++.+|+.+. .
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~------------ 90 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEAL----P------------ 90 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSC----C------------
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccC----C------------
Confidence 5578999999999987776 2238999999999999999987 4688888887542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
..+.+||+|++.. . ...+. --..+|+.+++.|+|||.+++....+...
T Consensus 91 -----------------~~~~~fD~v~~~~--~--l~~~~------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 138 (211)
T 2gs9_A 91 -----------------FPGESFDVVLLFT--T--LEFVE------DVERVLLEARRVLRPGGALVVGVLEALSP 138 (211)
T ss_dssp -----------------SCSSCEEEEEEES--C--TTTCS------CHHHHHHHHHHHEEEEEEEEEEEECTTSH
T ss_pred -----------------CCCCcEEEEEEcC--h--hhhcC------CHHHHHHHHHHHcCCCCEEEEEecCCcCc
Confidence 1136799999842 1 11111 12689999999999999999988766543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.7e-07 Score=91.71 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=76.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++.+|...+ |..+|++||++|.+++.+.+.... .++++++.+|+.+... ..
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--~~~v~~~~~d~~~~~~-~~----------- 142 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--RTNIIPVIEDARHPHK-YR----------- 142 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--CTTEEEECSCTTCGGG-GG-----------
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--cCCeEEEEcccCChhh-hc-----------
Confidence 45689999999999999998886 667999999998755444333211 1579999999876421 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
....+||+|++|....+ ....++..+.+.|+|||.+++.+..
T Consensus 143 ------------------~~~~~~D~V~~~~~~~~------------~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 143 ------------------MLIAMVDVIFADVAQPD------------QTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp ------------------GGCCCEEEEEECCCCTT------------HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ------------------ccCCcEEEEEEcCCCcc------------HHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 01257999999653111 1245688899999999999986543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.4e-07 Score=98.22 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=76.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
+.+.||+||+|+|.|++++.+... .+|.+||.++ +++.|++.. |+ +++++++.+|..++ +.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~~--~~~i~~i~~~~~~~--~l---------- 146 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNGL--EDRVHVLPGPVETV--EL---------- 146 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTTC--TTTEEEEESCTTTC--CC----------
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcCC--CceEEEEeeeeeee--cC----------
Confidence 346899999999999999988753 4899999997 788898876 44 67899999987654 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
..++|+|+......- ...+-.-+.++....+.|+|||+++
T Consensus 147 ----------------------pe~~DvivsE~~~~~-------l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 147 ----------------------PEQVDAIVSEWMGYG-------LLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp ----------------------SSCEEEEECCCCBTT-------BTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------------CccccEEEeeccccc-------ccccchhhhHHHHHHhhCCCCceEC
Confidence 267999998653321 1222234788888899999999988
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-06 Score=95.47 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=86.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC--CCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ--DKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~--~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
...+||++|+|+|.++..+.... ..+|++||+++.+++.|++.+.... +++++++.+|+.+++.....
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~--------- 289 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD--------- 289 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH---------
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh---------
Confidence 34689999999999999888864 4589999999999999999874321 22799999999999876531
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC-CCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS-SGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~-~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
.+.+||+|++|.-....+ ..+. ...-.-.+++..+.+.|+|+|++++...+..
T Consensus 290 --------------------~~~~fD~Ii~dpP~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 290 --------------------RGEKFDVIVMDPPKFVENKSQLM--GACRGYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp --------------------TTCCEEEEEECCSSTTTCSSSSS--CCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred --------------------cCCCCCEEEECCCCCCCChhHHH--HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 125799999975221100 0000 0001125789999999999999998765543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.3e-07 Score=88.83 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=76.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|.++..+... ..++++||+++.+++.|++.+.-..-++++++.+|..++ .
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~------------ 93 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL----T------------ 93 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGC----C------------
T ss_pred CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhC----C------------
Confidence 4569999999999999988887 359999999999999999886321124699999998653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
. ...||+|+... . ...+ ++. --..+++.+++.|+|||.+++-
T Consensus 94 -----------------~-~~~~D~v~~~~--~--l~~~--~~~--~~~~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 94 -----------------F-DRQYDFILSTV--V--LMFL--EAK--TIPGLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp -----------------C-CCCEEEEEEES--C--GGGS--CGG--GHHHHHHHHHHTEEEEEEEEEE
T ss_pred -----------------C-CCCceEEEEcc--h--hhhC--CHH--HHHHHHHHHHHhcCCCeEEEEE
Confidence 1 25799999742 1 0000 111 1277999999999999997753
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.35 E-value=9.5e-07 Score=95.88 Aligned_cols=141 Identities=13% Similarity=0.149 Sum_probs=95.1
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||+||+|+|.++..+....|..+|++||+++.+++.|++.+.. .+...+++.+|..++.
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~-~~~~~~~~~~d~~~~~----------------- 258 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAA-NGVEGEVFASNVFSEV----------------- 258 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHH-TTCCCEEEECSTTTTC-----------------
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCEEEEccccccc-----------------
Confidence 4589999999999999999998888999999999999999998732 1223677888876541
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHH
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 701 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 701 (771)
..+||+|+++. .-. .|+. ...-....+++.+++.|+|||.+++-.. +.... -
T Consensus 259 ------------------~~~fD~Iv~~~--~~~-~g~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~-~~~~~----~ 310 (343)
T 2pjd_A 259 ------------------KGRFDMIISNP--PFH-DGMQ--TSLDAAQTLIRGAVRHLNSGGELRIVAN-AFLPY----P 310 (343)
T ss_dssp ------------------CSCEEEEEECC--CCC-SSSH--HHHHHHHHHHHHHGGGEEEEEEEEEEEE-TTSSH----H
T ss_pred ------------------cCCeeEEEECC--Ccc-cCcc--CCHHHHHHHHHHHHHhCCCCcEEEEEEc-CCCCc----H
Confidence 25799999832 100 0100 0001136799999999999999987442 22221 2
Q ss_pred HHHHHhccceEEeeecCCccEEEEEecC
Q 004164 702 SRMKMVFNHLFCLQLEEDVNLVLFGLSS 729 (771)
Q Consensus 702 ~~l~~vF~~v~~~~~~~~~N~Vl~a~~~ 729 (771)
..+.+.|..+..+. .+..-.|+-+.+.
T Consensus 311 ~~l~~~f~~~~~~~-~~~gf~v~~~~k~ 337 (343)
T 2pjd_A 311 DVLDETFGFHEVIA-QTGRFKVYRAIMT 337 (343)
T ss_dssp HHHHHHHSCCEEEE-ECSSEEEEEEEC-
T ss_pred HHHHHhcCceEEEe-eCCCEEEEEEEeC
Confidence 45566787665544 3344556666543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=95.48 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=77.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|+|.++.++.+. +..+|++||+++ +++.|++.+ |+ .++++++.+|+.++ ..
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~--~~--------- 127 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKL--EDTITLIKGKIEEV--HL--------- 127 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTS--CC---------
T ss_pred cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCC--CCcEEEEEeeHHHh--cC---------
Confidence 45578999999999999999887 445999999997 899999886 33 46899999998754 11
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
...+||+|+.+.-.. .+ ...-.-..+|..+.+.|+|||+++
T Consensus 128 ----------------------~~~~~D~Ivs~~~~~----~l---~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 128 ----------------------PVEKVDVIISEWMGY----FL---LFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp ----------------------SCSCEEEEEECCCBT----TB---TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------------CCCcEEEEEEcCchh----hc---cCHHHHHHHHHHHHhhcCCCcEEE
Confidence 136799999853100 00 011112568999999999999998
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=95.74 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=78.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++.++... +..+|++||+++ +++.|++...- ...++++++.+|..++ ..
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------------ 129 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV--EL------------ 129 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------------
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc--cC------------
Confidence 4578999999999999999988 566999999995 99999988621 1256799999998765 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
...+||+|+.+.-... + ...-.-..++..+.+.|+|||+++.+
T Consensus 130 -------------------~~~~fD~Iis~~~~~~----l---~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 130 -------------------PVEKVDIIISEWMGYC----L---FYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp -------------------SSSCEEEEEECCCBBT----B---TBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred -------------------CCCceEEEEEcccccc----c---cCchhHHHHHHHHHHhCCCCCEEccc
Confidence 1367999998531110 0 11112367899999999999999743
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.8e-07 Score=92.00 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=98.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|.|.++..|....|..+|++||+||..++.|++.. |+ .++++++.+|+++.+..
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~I~v~~gD~l~~~~~----------- 87 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL--TEQIDVRKGNGLAVIEK----------- 87 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG-----------
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEecchhhccCc-----------
Confidence 447899999999999999999988779999999999999999986 55 56899999999875422
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
+.+||+|++- || ..-+-.++|......|+++|.||+.-... .
T Consensus 88 ----------------------~~~~D~Ivia--------gm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~----~ 129 (244)
T 3gnl_A 88 ----------------------KDAIDTIVIA--------GM----GGTLIRTILEEGAAKLAGVTKLILQPNIA----A 129 (244)
T ss_dssp ----------------------GGCCCEEEEE--------EE----CHHHHHHHHHHTGGGGTTCCEEEEEESSC----H
T ss_pred ----------------------cccccEEEEe--------CC----chHHHHHHHHHHHHHhCCCCEEEEEcCCC----h
Confidence 1359999871 22 11134778999999999999999876432 2
Q ss_pred HHHHHHHHHh-ccceEEeeec--CCccEEEEEecCC
Q 004164 698 DMVISRMKMV-FNHLFCLQLE--EDVNLVLFGLSSE 730 (771)
Q Consensus 698 ~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~~~~ 730 (771)
..+...|.+. |.-+-..-+. .-.=+|+.+.+..
T Consensus 130 ~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~~~~ 165 (244)
T 3gnl_A 130 WQLREWSEQNNWLITSEAILREDNKVYEIMVLAPSE 165 (244)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEEECS
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeCC
Confidence 3345555555 5432222122 2234566666553
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=92.17 Aligned_cols=114 Identities=13% Similarity=0.148 Sum_probs=81.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CC-CCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GF-TQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+.+||+||+|+|.++..|.... .+|++||+++.+++.|++.. +. ....++.++.+|..+.-.+..
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-------- 126 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-------- 126 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC--------
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc--------
Confidence 45789999999999999888874 49999999999999998764 11 122568899999887643321
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc---CcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA---DFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~---~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
...+||+|++--+.- ..+ +.. .=.-..+|+.+.+.|+|||.|++....
T Consensus 127 ----------------------~~~~fD~V~~~g~~l---~~~--~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 127 ----------------------AGDGFDAVICLGNSF---AHL--PDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp ----------------------CTTCEEEEEECTTCG---GGS--CCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ----------------------cCCCeEEEEEcChHH---hhc--CccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 136799999821000 000 000 001367999999999999999987643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=96.74 Aligned_cols=142 Identities=19% Similarity=0.159 Sum_probs=97.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|.|.++..+... ..+|++||+|+.+++.|++.+... .-.++++.+|+.++...
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~-~~~v~~~~~D~~~~~~~-------------- 295 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEAN-ALKAQALHSDVDEALTE-------------- 295 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHT-TCCCEEEECSTTTTSCT--------------
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc-CCCeEEEEcchhhcccc--------------
Confidence 4568999999999999988887 359999999999999999987321 12389999998765221
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
..+||+|+++. .-.. +.. ...-....+++.+++.|+|||.+++-.. +... .
T Consensus 296 -------------------~~~fD~Ii~np--p~~~-~~~--~~~~~~~~~l~~~~~~LkpGG~l~iv~n-~~l~----~ 346 (381)
T 3dmg_A 296 -------------------EARFDIIVTNP--PFHV-GGA--VILDVAQAFVNVAAARLRPGGVFFLVSN-PFLK----Y 346 (381)
T ss_dssp -------------------TCCEEEEEECC--CCCT-TCS--SCCHHHHHHHHHHHHHEEEEEEEEEEEC-TTSC----H
T ss_pred -------------------CCCeEEEEECC--chhh-ccc--ccHHHHHHHHHHHHHhcCcCcEEEEEEc-CCCC----h
Confidence 25799999952 1110 000 0011236899999999999999998653 2222 2
Q ss_pred HHHHHHhccceEEeeecCCccEEEEEecCC
Q 004164 701 ISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 730 (771)
Q Consensus 701 ~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~ 730 (771)
-..+.+.|..+-.+ .+..=.|+-+.+.+
T Consensus 347 ~~~l~~~f~~v~~l--~~~gF~Vl~a~~~~ 374 (381)
T 3dmg_A 347 EPLLEEKFGAFQTL--KVAEYKVLFAEKRG 374 (381)
T ss_dssp HHHHHHHHSCCEEE--EESSSEEEEEECC-
T ss_pred HHHHHHhhccEEEE--eCCCEEEEEEEEec
Confidence 35567788887766 33344566555544
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.34 E-value=9.6e-07 Score=93.26 Aligned_cols=105 Identities=15% Similarity=0.219 Sum_probs=80.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|.++..|...++ .++++||+++.+++.|++.+ |+ .++++++.+|..+. .
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~----~-------- 145 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGSFLEI----P-------- 145 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECCTTSC----S--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEEcCcccC----C--------
Confidence 4557999999999999998888764 59999999999999999886 44 46799999998652 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
..+..||+|+.-- ....+ +. -..+|+.+++.|+|||.|++...
T Consensus 146 ---------------------~~~~~fD~v~~~~----~l~~~----~~--~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 146 ---------------------CEDNSYDFIWSQD----AFLHS----PD--KLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp ---------------------SCTTCEEEEEEES----CGGGC----SC--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEeEEEecc----hhhhc----CC--HHHHHHHHHHHcCCCeEEEEEEe
Confidence 1136799999721 10001 11 37899999999999999998654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.8e-07 Score=91.31 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=77.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC------CCcEEEEEcCHHHHHHHHhhcCCCC-----CCCeeEEEcchHHHHHhhcc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP------FVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKS 609 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p------~~~i~~VEiD~~v~~vA~~~Fg~~~-----~~r~~v~i~Dg~~~l~~~~~ 609 (771)
...+||+||+|+|.++..+....+ ..+|++||+++.+++.|++.+.-.. .++++++.+|+.+.+..
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 160 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP--- 160 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG---
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc---
Confidence 346899999999999988888654 2589999999999999998863111 25799999998752111
Q ss_pred CCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 610 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...||+|+++.... . +++.+.+.|+|||.+++.+
T Consensus 161 ------------------------------~~~fD~I~~~~~~~-----------~-----~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 161 ------------------------------NAPYNAIHVGAAAP-----------D-----TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp ------------------------------GCSEEEEEECSCBS-----------S-----CCHHHHHTEEEEEEEEEEE
T ss_pred ------------------------------CCCccEEEECCchH-----------H-----HHHHHHHHhcCCCEEEEEE
Confidence 14699999854221 1 2278899999999999998
Q ss_pred cc
Q 004164 690 VS 691 (771)
Q Consensus 690 ~~ 691 (771)
..
T Consensus 195 ~~ 196 (227)
T 1r18_A 195 GP 196 (227)
T ss_dssp SC
T ss_pred ec
Confidence 64
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.33 E-value=6.9e-07 Score=98.51 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=83.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc--------CCCCCCCeeEEEcchHHHHHhhccC
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF--------GFTQDKSLKVHITDGIKFVREMKSS 610 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~F--------g~~~~~r~~v~i~Dg~~~l~~~~~~ 610 (771)
....+||+||+|+|.++..|...+ |..+|++||+++.+++.|++.+ |....++++++.+|..+......
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~-- 159 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP-- 159 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS--
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc--
Confidence 355789999999999998888876 6789999999999999999986 41234689999999876421100
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 611 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.......||+|+...--. .+ +. -..+|+.+++.|+|||.|++..+
T Consensus 160 -------------------------~~~~~~~fD~V~~~~~l~----~~----~d--~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 160 -------------------------EGVPDSSVDIVISNCVCN----LS----TN--KLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp -------------------------CCCCTTCEEEEEEESCGG----GC----SC--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------------------------CCCCCCCEEEEEEccchh----cC----CC--HHHHHHHHHHHcCCCCEEEEEEe
Confidence 011236799999842111 01 11 26899999999999999998643
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.33 E-value=9.2e-07 Score=96.23 Aligned_cols=103 Identities=21% Similarity=0.196 Sum_probs=76.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.++.++... +..+|++||+++ +++.|++.+ |+ .++++++.+|..++ ..
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l--~~~v~~~~~d~~~~--~~---------- 113 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNL--TDRIVVIPGKVEEV--SL---------- 113 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC--TTTEEEEESCTTTC--CC----------
T ss_pred CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCC--CCcEEEEEcchhhC--CC----------
Confidence 4578999999999999999886 556999999997 789998876 43 46899999997653 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+...... .+ ..+. -.+++..+++.|+|||+++++.
T Consensus 114 ----------------------~~~~D~Ivs~~~~~----~~--~~~~--~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 114 ----------------------PEQVDIIISEPMGY----ML--FNER--MLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp ----------------------SSCEEEEEECCCBT----TB--TTTS--HHHHHHHGGGGEEEEEEEESCE
T ss_pred ----------------------CCceeEEEEeCchh----cC--ChHH--HHHHHHHHHhhcCCCeEEEEec
Confidence 24699999842110 00 0111 2567788899999999998653
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=9.9e-07 Score=94.63 Aligned_cols=103 Identities=19% Similarity=0.168 Sum_probs=77.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++..+....+ ..+|++||+++.+++.|++.+.-..-++++++.+|+.+.+..
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~------------ 141 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE------------ 141 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG------------
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc------------
Confidence 3457899999999999999988876 367999999999999999987211113499999999764221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
...||+|+++.--. ++. +.+.+.|+|||++++.+.+
T Consensus 142 ---------------------~~~fD~Iv~~~~~~-----------~~~-----~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 142 ---------------------FSPYDVIFVTVGVD-----------EVP-----ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ---------------------GCCEEEEEECSBBS-----------CCC-----HHHHHHEEEEEEEEEEBCB
T ss_pred ---------------------CCCeEEEEEcCCHH-----------HHH-----HHHHHhcCCCcEEEEEECC
Confidence 24699999953211 111 5788899999999998644
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.6e-07 Score=92.81 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=73.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..+... ..+|++||+++.+++.|++.. ++++++.+|+.+.+.
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------------- 105 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANA-----PHADVYEWNGKGELP--------------- 105 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHC-----TTSEEEECCSCSSCC---------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhC-----CCceEEEcchhhccC---------------
Confidence 4578999999999999999888 369999999999999999982 468999999853211
Q ss_pred ccccccCCCCCCCCCCCCC-CCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 621 GNEITSNNTRSCNGNCTAS-NARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~-~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
.. ..+||+|+.. .+ -..+|+.+.+.|+|||.|+
T Consensus 106 -----------------~~~~~~fD~v~~~---~~-------------~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 106 -----------------AGLGAPFGLIVSR---RG-------------PTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp -----------------TTCCCCEEEEEEE---SC-------------CSGGGGGHHHHEEEEEEEE
T ss_pred -----------------CcCCCCEEEEEeC---CC-------------HHHHHHHHHHHcCCCcEEE
Confidence 11 3579999985 11 1466789999999999999
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-06 Score=92.59 Aligned_cols=104 Identities=11% Similarity=0.079 Sum_probs=77.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|.|.++..|... ..+|++||+++.+++.|++.+.-. .-+++++.+|..++..
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~--------------- 181 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKE-NLNISTALYDINAANI--------------- 181 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCGGGCCC---------------
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHc-CCceEEEEeccccccc---------------
Confidence 4678999999999999998887 359999999999999999987321 1279999999865311
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+... . ..-+ +++ .-..+++.+++.|+|||.+++..
T Consensus 182 -------------------~~~fD~i~~~~--~--~~~~--~~~--~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 182 -------------------QENYDFIVSTV--V--FMFL--NRE--RVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp -------------------CSCEEEEEECS--S--GGGS--CGG--GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -------------------cCCccEEEEcc--c--hhhC--CHH--HHHHHHHHHHHhcCCCcEEEEEE
Confidence 26799999832 1 0000 111 12589999999999999977644
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-06 Score=92.80 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=76.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.+++++... +..+|++||+++ +++.|++.+ ++ .++++++.+|+.++ .
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~----~--------- 100 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGF--SDKITLLRGKLEDV----H--------- 100 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTS----C---------
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHH-HHHHHHHHHHHcCC--CCCEEEEECchhhc----c---------
Confidence 4568999999999999999887 455999999995 899999886 43 46899999998654 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
....+||+|+.+.-.. .+ ...-.-..++..+.+.|+|||+++
T Consensus 101 --------------------~~~~~~D~Ivs~~~~~----~l---~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 101 --------------------LPFPKVDIIISEWMGY----FL---LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp --------------------CSSSCEEEEEECCCBT----TB---STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCCcccEEEEeCchh----hc---ccHHHHHHHHHHHHhhcCCCeEEE
Confidence 0125799999853111 00 111122578999999999999998
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-06 Score=92.63 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=62.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCe----EEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG----ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~----V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (771)
+.+...+.+.+.. .++.+|||||||+|.++..|++.+. . |+++|+++.+++.++++. ..+++++++|+.
T Consensus 28 ~~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~---~~~v~~i~~D~~ 100 (279)
T 3uzu_A 28 HGVIDAIVAAIRP---ERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF---GELLELHAGDAL 100 (279)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH---GGGEEEEESCGG
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc---CCCcEEEECChh
Confidence 3555667777654 5788999999999999999998865 4 999999999999887763 467999999999
Q ss_pred CCCCCC
Q 004164 127 SMQFMD 132 (771)
Q Consensus 127 ~l~~~~ 132 (771)
++++++
T Consensus 101 ~~~~~~ 106 (279)
T 3uzu_A 101 TFDFGS 106 (279)
T ss_dssp GCCGGG
T ss_pred cCChhH
Confidence 987653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.2e-06 Score=89.17 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=79.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|.++..+...+|..+++++|++ .+++.|++.+ ++ .++++++.+|..+. ..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~--~~--------- 229 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV--ASRYHTIAGSAFEV--DY--------- 229 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC--GGGEEEEESCTTTS--CC---------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC--CcceEEEecccccC--CC---------
Confidence 35579999999999999999999999999999999 9999999986 43 45799999987652 11
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc---cHHHHHHHHHccCCCcEEEEEe
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~---~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...||+|++- .. ...+- -..+|+.+++.|+|||.+++.-
T Consensus 230 -----------------------~~~~D~v~~~--~~---------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 230 -----------------------GNDYDLVLLP--NF---------LHHFDVATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp -----------------------CSCEEEEEEE--SC---------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------------CCCCcEEEEc--ch---------hccCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 1349999981 11 11121 2589999999999999777643
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.8e-07 Score=95.22 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCCcEEEEeccccHHHHHHHHh--CCCCcEEEEEcCHHHHHHHHhhcC
Q 004164 541 KSVKAVVIGLGAGLLPMFLHEC--MPFVGIEAVELDLTMLNLAEDYFG 586 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~--~p~~~i~~VEiD~~v~~vA~~~Fg 586 (771)
.+.+||++|+|+|.++..+... .+..+|++||+|+.++++|++...
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~ 98 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLA 98 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHH
Confidence 4578999999999999998887 566799999999999999997753
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-06 Score=95.31 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=78.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++.++.... ..+|++||++ .+++.|++.+.- ...++++++.+|..++ .
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---------- 125 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI----S---------- 125 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC----C----------
T ss_pred CCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc----C----------
Confidence 456789999999999999999883 3499999999 999999988721 1246799999998664 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
. ..+||+|+.+....- ....-.-..+++.+.+.|+|||+|++
T Consensus 126 -------------------~-~~~~D~Iv~~~~~~~-------l~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 126 -------------------L-PEKVDVIISEWMGYF-------LLRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp -------------------C-SSCEEEEEECCCBTT-------BTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred -------------------c-CCcceEEEEcChhhc-------ccchHHHHHHHHHHHhhCCCCeEEEE
Confidence 0 157999999541110 01111236789999999999999984
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-06 Score=96.15 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=83.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCC-CCC-eeEEEcchHHHHH-hhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQ-DKS-LKVHITDGIKFVR-EMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~-~~r-~~v~i~Dg~~~l~-~~~~~~~~~~~ 616 (771)
...+||+++.|+|.++..+....++ .+|++||+||..++.+++...+.. +++ ++++.+|+.++++ ...
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~-------- 123 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWG-------- 123 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCS--------
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhC--------
Confidence 3468999999999999988887654 589999999999999999873321 345 9999999999987 642
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.+||+|++|.+.. ..+|++.+.+.|+++|++++..
T Consensus 124 ------------------------~~fD~V~lDP~g~--------------~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 124 ------------------------FGFDYVDLDPFGT--------------PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ------------------------SCEEEEEECCSSC--------------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------------CCCcEEEECCCcC--------------HHHHHHHHHHHhCCCCEEEEEe
Confidence 5699999986311 1579999999999999988754
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.30 E-value=9.9e-07 Score=87.46 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=77.4
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 623 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 623 (771)
+||+||+|.|.++..+... ..++++||+++.+++.|++.+.- ...+++++.+|..++ .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~d~~~~----~--------------- 89 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQE-KGVKITTVQSNLADF----D--------------- 89 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHH-HTCCEEEECCBTTTB----S---------------
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHh-cCCceEEEEcChhhc----C---------------
Confidence 9999999999999888876 35999999999999999998731 112688888887653 1
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 624 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.....||+|+... .- + ++. .-..+|+.+++.|+|||.+++.....
T Consensus 90 --------------~~~~~fD~v~~~~-~~-----~--~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 90 --------------IVADAWEGIVSIF-CH-----L--PSS--LRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp --------------CCTTTCSEEEEEC-CC-----C--CHH--HHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred --------------CCcCCccEEEEEh-hc-----C--CHH--HHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 1135799999732 10 0 111 13679999999999999999987544
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=89.50 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=76.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++..+....+ .+|++||+++.+++.|++.+.-..-++++++.+|+.. ...
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~~----------- 154 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK---GFP----------- 154 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG---CCG-----------
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc---CCC-----------
Confidence 3456899999999999999998877 7999999999999999998621111349999999821 111
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....||+|+++..- ..+ ...+.+.|+|||.+++.+...
T Consensus 155 -------------------~~~~fD~Ii~~~~~-----------~~~-----~~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 155 -------------------PKAPYDVIIVTAGA-----------PKI-----PEPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp -------------------GGCCEEEEEECSBB-----------SSC-----CHHHHHTEEEEEEEEEEECSS
T ss_pred -------------------CCCCccEEEECCcH-----------HHH-----HHHHHHhcCCCcEEEEEEecC
Confidence 01359999985311 112 136788999999999988544
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.1e-07 Score=89.41 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=75.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHH----HHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL----AEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~v----A~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||+||+|+|.++..|...+|..+|++||+++.+++. |++...-..-++++++++|+.+. .
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l----~------- 94 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL----P------- 94 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC----C-------
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC----C-------
Confidence 34578999999999999999999998999999999998774 33332111224799999998763 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC-cCc-ccHHHHHHHHHccCCCcEEEEEe
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA-ADF-VEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp-~~f-~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..... |.|++.+.... . . ..+ -...+|+.+++.|+|||.|++.+
T Consensus 95 ----------------------~~~~~-d~v~~~~~~~~----~---~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 95 ----------------------PLSGV-GELHVLMPWGS----L---LRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp ----------------------SCCCE-EEEEEESCCHH----H---HHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred ----------------------CCCCC-CEEEEEccchh----h---hhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 01133 76664331100 0 0 000 01688999999999999999854
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=3e-06 Score=83.43 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=86.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC---------CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEE-EcchHHHHH--hhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF---------VGIEAVELDLTMLNLAEDYFGFTQDKSLKVH-ITDGIKFVR--EMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~---------~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~-i~Dg~~~l~--~~~ 608 (771)
...+||+||+|+|.++..|...++. .+|++||+++.. . -++++++ .+|....-. ...
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~---~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------P---LEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------C---CTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------c---CCCCeEEEeccCCCHHHHHHHH
Confidence 4578999999999999999998764 699999999941 1 2467888 888653311 100
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc--------HHHHHHHHHccC
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE--------GSFLLTVKDALS 680 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~--------~~fl~~~~~~L~ 680 (771)
. ...+.+||+|+.|.... . .+ ....+ ..+++.+.+.|+
T Consensus 91 ~---------------------------~~~~~~fD~V~~~~~~~-~-~~-----~~~~~~~~~~~~~~~~l~~~~~~Lk 136 (196)
T 2nyu_A 91 E---------------------------VLPGRRADVILSDMAPN-A-TG-----FRDLDHDRLISLCLTLLSVTPDILQ 136 (196)
T ss_dssp H---------------------------HSGGGCEEEEEECCCCC-C-CS-----CHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred H---------------------------hcCCCCCcEEEeCCCCC-C-CC-----CcccCHHHHHHHHHHHHHHHHHHhc
Confidence 0 00124799999965211 0 01 01111 378999999999
Q ss_pred CCcEEEEEeccCChhHHHHHHHHHHHhccceEEee
Q 004164 681 EQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 715 (771)
Q Consensus 681 ~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~ 715 (771)
|||.|++..+.... ...+...++..|..+..++
T Consensus 137 pgG~lv~~~~~~~~--~~~~~~~l~~~f~~v~~~~ 169 (196)
T 2nyu_A 137 PGGTFLCKTWAGSQ--SRRLQRRLTEEFQNVRIIK 169 (196)
T ss_dssp EEEEEEEEECCSGG--GHHHHHHHHHHEEEEEEEC
T ss_pred CCCEEEEEecCCcc--HHHHHHHHHHHhcceEEEC
Confidence 99999998764432 3456778888898776664
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.4e-07 Score=92.97 Aligned_cols=158 Identities=11% Similarity=0.067 Sum_probs=93.3
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCc
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (771)
|.++.++....++.+|||||||+|.++..+++. +...|+++|++..+...... ....+.++.+...++....++.+.+
T Consensus 79 L~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cccCCCceEEeeCCcchhhcCCCCc
Confidence 444443333467889999999999999988854 66689999998642111100 0011234444554443344567899
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccC--eEEEEEEcC--cchhhcchhhhhccCcEEEEeecCCCCCCCC
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSG--GKFVCLTLA--ESHVLGLLFPKFRFGWKMSVHAIPQKSSSEP 211 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpG--G~~ii~~~~--~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~ 211 (771)
|+|++..+.+ -.....+......+|.-+.++|+|| |.|++-.+. .+... .+...++..|..-...-| ++...
T Consensus 158 DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~-~l~~~lk~~F~~V~~~KP--aSR~~ 233 (282)
T 3gcz_A 158 DTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIM-EELSRLQLKHGGGLVRVP--LSRNS 233 (282)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHH-HHHHHHHHHHCCEEECCT--TSCTT
T ss_pred CEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHH-HHHHHHHHhcCCEEEEcC--CCccc
Confidence 9999987776 3332211112224588888999999 999998887 44432 334444333333333333 33445
Q ss_pred CCccEEEE
Q 004164 212 SLQTFMVV 219 (771)
Q Consensus 212 ~l~~f~~v 219 (771)
+.+.|++.
T Consensus 234 S~E~Y~V~ 241 (282)
T 3gcz_A 234 THEMYWVS 241 (282)
T ss_dssp CCCEEEET
T ss_pred CcceeEEE
Confidence 56656553
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-06 Score=90.61 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=75.5
Q ss_pred CCCcEEEEeccccHHHH----HHHHhCCCCcE--EEEEcCHHHHHHHHhhcCCC---CCCCeeEEEcchHHHHHhhccCC
Q 004164 541 KSVKAVVIGLGAGLLPM----FLHECMPFVGI--EAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSS 611 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~----~L~~~~p~~~i--~~VEiD~~v~~vA~~~Fg~~---~~~r~~v~i~Dg~~~l~~~~~~~ 611 (771)
.+.+||+||+|+|.++. .+...+|...| ++||+++.|++.|++.+.-. ..-++.+..+|+.++......
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-- 129 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE-- 129 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT--
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc--
Confidence 45689999999996543 33444577655 99999999999999986311 112344556677665432110
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-cHHHHHHHHHccCCCcEEEEEec
Q 004164 612 ATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
+..+.+||+|++- .. -..+- -..+|+.++++|+|||.|++-..
T Consensus 130 -------------------------~~~~~~fD~V~~~--~~---------l~~~~d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 130 -------------------------KKELQKWDFIHMI--QM---------LYYVKDIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp -------------------------TTCCCCEEEEEEE--SC---------GGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -------------------------ccCCCceeEEEEe--ee---------eeecCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 0113679999972 11 11111 26699999999999999998765
Q ss_pred cCC
Q 004164 691 SRS 693 (771)
Q Consensus 691 ~~~ 693 (771)
+.+
T Consensus 174 ~~~ 176 (292)
T 2aot_A 174 SGS 176 (292)
T ss_dssp CTT
T ss_pred cCC
Confidence 543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=90.46 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=78.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|.++..|... ..+|++||+++.+++.|++.+.- ...+++++.+|..++ .
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~----~------------ 101 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKE-RNLKIEFLQGDVLEI----A------------ 101 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH-TTCCCEEEESCGGGC----C------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHh-cCCceEEEECChhhc----c------------
Confidence 4578999999999999888876 35899999999999999988732 123689999998763 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
...+||+|++....... + ++. --..+|+.+++.|+|||+|++.+.+
T Consensus 102 ------------------~~~~fD~v~~~~~~~~~---~--~~~--~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 102 ------------------FKNEFDAVTMFFSTIMY---F--DEE--DLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp ------------------CCSCEEEEEECSSGGGG---S--CHH--HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ------------------cCCCccEEEEcCCchhc---C--CHH--HHHHHHHHHHHHcCCCeEEEEeccc
Confidence 02569999973211100 0 011 1267899999999999999987754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-06 Score=85.95 Aligned_cols=100 Identities=20% Similarity=0.323 Sum_probs=76.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..+.... .+|++||+++.+++.|++.+.-.. +++++.+|+.+.+. .
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--~----------- 131 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--E----------- 131 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--G-----------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--c-----------
Confidence 345689999999999999998886 699999999999999999985322 79999999876211 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
...||+|+++..- .++. ..+.+.|+|||.+++.....
T Consensus 132 --------------------~~~fD~v~~~~~~-----------~~~~-----~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 132 --------------------EKPYDRVVVWATA-----------PTLL-----CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp --------------------GCCEEEEEESSBB-----------SSCC-----HHHHHTEEEEEEEEEEECSS
T ss_pred --------------------CCCccEEEECCcH-----------HHHH-----HHHHHHcCCCcEEEEEEcCC
Confidence 2569999985311 1121 46888999999999887544
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=7.8e-06 Score=89.04 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=78.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|.++..+...+|..+++++|+ |.+++.|++.+ ++ .++++++.+|..+. ..
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~--~~--------- 254 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKE--SY--------- 254 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC--TTTEEEEECCTTTS--CC---------
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC--CCCEEEEeCccccC--CC---------
Confidence 4567999999999999999999999999999999 99999999886 33 46799999998653 11
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc---cHHHHHHHHHccCCCcEEEEE
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~---~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+|+|++.- . -..+- -..+|+.+++.|+|||.+++.
T Consensus 255 ------------------------~~~D~v~~~~--v---------lh~~~d~~~~~~l~~~~~~L~pgG~l~i~ 294 (359)
T 1x19_A 255 ------------------------PEADAVLFCR--I---------LYSANEQLSTIMCKKAFDAMRSGGRLLIL 294 (359)
T ss_dssp ------------------------CCCSEEEEES--C---------GGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred ------------------------CCCCEEEEec--h---------hccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2249998821 1 11122 267899999999999999654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-06 Score=93.18 Aligned_cols=104 Identities=9% Similarity=0.038 Sum_probs=79.8
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
..+||+||+|.|.+...+...+|..+++++|+ |.+++.|++++. ....++++++.+|..+.-...
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------------- 245 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------------- 245 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT-------------
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC-------------
Confidence 67999999999999999999999999999999 899999998862 112468999999976531001
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...||+|++-- . -..+-+ ..+|+.+++.|+|||.|++.-
T Consensus 246 -------------------~~~~D~v~~~~--v---------lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 246 -------------------GGAADVVMLND--C---------LHYFDAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp -------------------TCCEEEEEEES--C---------GGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -------------------CCCccEEEEec--c---------cccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 24599999811 1 111222 579999999999999988753
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=96.79 Aligned_cols=100 Identities=13% Similarity=0.004 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC---------------C-CCcEEEEeecCCCCC
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD---------------R-SDMRWRVMDMTSMQF 130 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~---------------~-~~i~~~~~D~~~l~~ 130 (771)
++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++..... + .+++++++|+.++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 4689999999999999999987 5558999999999999887655443 3 238899999877521
Q ss_pred -CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 131 -MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 131 -~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..++||+|+..- . .. ...++..+.+.|++||+++++.
T Consensus 127 ~~~~~fD~I~lDP-~---~~-------~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GS-------PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SC-------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CC-------HHHHHHHHHHhcCCCCEEEEEe
Confidence 135799999432 1 11 1378899999999999776654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-06 Score=93.87 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=69.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (771)
+.+...+.+++.. .++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.++++....+.+++++++|+.+++
T Consensus 12 pvLl~e~l~~L~~---~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~ 88 (301)
T 1m6y_A 12 PVMVREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 88 (301)
T ss_dssp CTTHHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 3445556666654 578899999999999999999873 459999999999999998877555578999999998874
Q ss_pred --CC---CCCccEEEec
Q 004164 130 --FM---DETFDVILDK 141 (771)
Q Consensus 130 --~~---~~sFDlVi~~ 141 (771)
+. .++||.|+..
T Consensus 89 ~~l~~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 89 FLLKTLGIEKVDGILMD 105 (301)
T ss_dssp HHHHHTTCSCEEEEEEE
T ss_pred HHHHhcCCCCCCEEEEc
Confidence 22 1579999854
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-06 Score=94.21 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=79.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|.++..+...+|..+++++|+ |.+++.|++.+ ++ .++++++.+|..+ ...
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~---~~~-------- 246 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL--ADRVTVAEGDFFK---PLP-------- 246 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTS---CCS--------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC--CCceEEEeCCCCC---cCC--------
Confidence 3567999999999999999999999999999999 99999999886 33 4589999999764 111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEEec
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
..||+|++.- . -..+-+ ..+|+.+++.|+|||.+++.-.
T Consensus 247 ------------------------~~~D~v~~~~--v---------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 247 ------------------------VTADVVLLSF--V---------LLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp ------------------------CCEEEEEEES--C---------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ------------------------CCCCEEEEec--c---------ccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 2399999831 1 112222 3799999999999998887543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.26 E-value=9.1e-07 Score=92.05 Aligned_cols=97 Identities=12% Similarity=0.193 Sum_probs=77.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..+...+|..++++||+++.+++.|++.+ +++.++.+|+.+. .
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~------------ 143 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRL----P------------ 143 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSC----S------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhC----C------------
Confidence 457899999999999999999887789999999999999999886 3578888887542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+..||+|+.- +. ..+++.+.+.|+|||.+++.....
T Consensus 144 -----------------~~~~~fD~v~~~-~~----------------~~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 144 -----------------FSDTSMDAIIRI-YA----------------PCKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -----------------BCTTCEEEEEEE-SC----------------CCCHHHHHHHEEEEEEEEEEEECT
T ss_pred -----------------CCCCceeEEEEe-CC----------------hhhHHHHHHhcCCCcEEEEEEcCH
Confidence 113579999962 11 124899999999999999876544
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.1e-06 Score=92.40 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=78.0
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+||+||+|+|.++..+...+|..+++++|+ |.+++.|++.+.- ...++++++.+|..+ ..
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~-------------- 230 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ---EV-------------- 230 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT---CC--------------
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC---CC--------------
Confidence 7999999999999999999999999999999 9999999998621 114689999998754 11
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...||+|++-- . -..+-+ ..+|+.+++.|+|||.+++.-
T Consensus 231 ------------------~~~~D~v~~~~--v---------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 231 ------------------PSNGDIYLLSR--I---------IGDLDEAASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp ------------------CSSCSEEEEES--C---------GGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ------------------CCCCCEEEEch--h---------ccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 14699999721 1 011111 489999999999999988763
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.1e-07 Score=90.13 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=78.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..+... .++++||+++.+++.|++.+.- ...+++++.+|..++ .
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~d~~~~----~------------ 92 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAME-TNRHVDFWVQDMREL----E------------ 92 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHH-TTCCCEEEECCGGGC----C------------
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhh-cCCceEEEEcChhhc----C------------
Confidence 3478999999999998888776 5899999999999999998732 125689999997653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
. ..+||+|++..+.-.. + +..---..+|+.+.+.|+|||.+++.+..
T Consensus 93 -----------------~-~~~fD~v~~~~~~~~~---~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 93 -----------------L-PEPVDAITILCDSLNY---L---QTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp -----------------C-SSCEEEEEECTTGGGG---C---CSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----------------C-CCCcCEEEEeCCchhh---c---CCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 0 2579999984211100 0 00001257899999999999999997743
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-06 Score=86.04 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=77.2
Q ss_pred CCCCcEEEEeccccHH-HHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLL-PMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l-~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.+ ..++.. +..++++||+++.+++.|++.+.- ...+++++.+|+.+. .
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~d~~~~----~---------- 84 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRE-NNFKLNISKGDIRKL----P---------- 84 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHH-HTCCCCEEECCTTSC----C----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHh-cCCceEEEECchhhC----C----------
Confidence 3457899999999976 344433 346999999999999999988631 124688999988642 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
.....||+|+.. .....+ |+. --..+++.+++.|+|||.+++...+..
T Consensus 85 -------------------~~~~~fD~v~~~----~~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 85 -------------------FKDESMSFVYSY----GTIFHM--RKN--DVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp -------------------SCTTCEEEEEEC----SCGGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred -------------------CCCCceeEEEEc----ChHHhC--CHH--HHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 113679999972 110111 111 136789999999999999999876543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=7.6e-06 Score=94.18 Aligned_cols=176 Identities=9% Similarity=0.032 Sum_probs=110.7
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc----C---------------CCeEEEEcCCHHHHHHH
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G---------------FHGITNVDFSKVVISDM 107 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~----g---------------~~~V~~vDiS~~~i~~~ 107 (771)
|.....+...+.+++.. .++.+|||++||+|.+...+++. + ..+++|+|+++.++..+
T Consensus 151 fyTP~~iv~~mv~~l~p---~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 151 YFTPRPLIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp CCCCHHHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred eeCCHHHHHHHHHHhcc---CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 33445677777888764 56789999999999998777653 1 13799999999999877
Q ss_pred HHHhhcCC-CC-----cEEEEeecCCCC-CCCCCccEEEeccccccccCcc-------cchHHHHHHHHHHHHccccCeE
Q 004164 108 LRRNVRDR-SD-----MRWRVMDMTSMQ-FMDETFDVILDKGGLDALMEPE-------LGHKLGNQYLSEVKRLLKSGGK 173 (771)
Q Consensus 108 ~~~~~~~~-~~-----i~~~~~D~~~l~-~~~~sFDlVi~~~~l~~l~~~~-------~~~~~~~~~l~~i~rvLkpGG~ 173 (771)
+..+...+ .. ..+.++|....+ ...++||+|+++-.+....... ........++..+.+.|+|||+
T Consensus 228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 307 (541)
T 2ar0_A 228 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR 307 (541)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCE
Confidence 65543333 22 788999987653 4457899999986655432210 0001133789999999999999
Q ss_pred EEEEEcCc----chhhcchhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEEcCC
Q 004164 174 FVCLTLAE----SHVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (771)
Q Consensus 174 ~ii~~~~~----~~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (771)
++++.... ......+...+ ..++...+..++...=.....+..+++++|.+.
T Consensus 308 ~a~V~p~~~L~~~~~~~~iR~~L~~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~~~ 364 (541)
T 2ar0_A 308 AAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 364 (541)
T ss_dssp EEEEEEHHHHHCCTHHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred EEEEecCcceecCcHHHHHHHHHhhcCCEEEEEEcCcCcccCCCCcEEEEEEECCCC
Confidence 98886431 11011122222 223334455555321122345567777777654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-06 Score=94.04 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=86.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||++|+|+|.++.. .. +..+|++||++|.+++.|++.+.... +++++++.+|+.+++
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--------------- 256 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--------------- 256 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------------
T ss_pred CCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------------
Confidence 457899999999999888 55 45699999999999999999873221 357999999998764
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
.+||+|++|. |. ...++++.+.+.|+|||++++...+.. ...
T Consensus 257 ---------------------~~fD~Vi~dp------------P~--~~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~ 298 (336)
T 2yx1_A 257 ---------------------VKGNRVIMNL------------PK--FAHKFIDKALDIVEEGGVIHYYTIGKD---FDK 298 (336)
T ss_dssp ---------------------CCEEEEEECC------------TT--TGGGGHHHHHHHEEEEEEEEEEEEESS---SHH
T ss_pred ---------------------CCCcEEEECC------------cH--hHHHHHHHHHHHcCCCCEEEEEEeecC---chH
Confidence 2599999953 11 113889999999999999998765555 334
Q ss_pred HHHHHHHhc
Q 004164 700 VISRMKMVF 708 (771)
Q Consensus 700 v~~~l~~vF 708 (771)
+.+.+++.+
T Consensus 299 ~~~~l~~~~ 307 (336)
T 2yx1_A 299 AIKLFEKKC 307 (336)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 566676664
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.6e-06 Score=89.55 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=80.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.+...+... +..++++||+++.+++.|++.+.-. ...+++++.+|..+. ...
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~---------- 129 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR--HMD---------- 129 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS--CCC----------
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc--ccC----------
Confidence 34579999999999887777776 4559999999999999999987321 235789999998653 100
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
....||+|++...-. .+..+.. --..+|+.+++.|+|||.|++....
T Consensus 130 --------------------~~~~fD~v~~~~~l~----~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 130 --------------------LGKEFDVISSQFSFH----YAFSTSE--SLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp --------------------CSSCEEEEEEESCGG----GGGSSHH--HHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred --------------------CCCCcCEEEECchhh----hhcCCHH--HHHHHHHHHHHhcCCCCEEEEEECC
Confidence 136799999842100 0000011 1267999999999999999998744
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=95.45 Aligned_cols=107 Identities=11% Similarity=0.051 Sum_probs=78.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..+...+|..+++++|+ |.+++.|++.+.-. ..++++++.+|..+. +..
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~----------- 244 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDR--DVP----------- 244 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSS--SCC-----------
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEcccccc--CCC-----------
Confidence 457999999999999999999999999999999 99999999987421 246899999997542 000
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
. ...||+|++-- . ...+ +.+ --..+|+.+++.|+|||.+++.
T Consensus 245 ------------------~-p~~~D~v~~~~--v--lh~~--~~~--~~~~~l~~~~~~L~pgG~l~i~ 286 (363)
T 3dp7_A 245 ------------------F-PTGFDAVWMSQ--F--LDCF--SEE--EVISILTRVAQSIGKDSKVYIM 286 (363)
T ss_dssp ------------------C-CCCCSEEEEES--C--STTS--CHH--HHHHHHHHHHHHCCTTCEEEEE
T ss_pred ------------------C-CCCcCEEEEec--h--hhhC--CHH--HHHHHHHHHHHhcCCCcEEEEE
Confidence 0 14699998721 1 0000 011 1146899999999999988774
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.9e-06 Score=90.62 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=77.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+|++||+|.|.+...|.+.+|+.++++.|+ |.|++.|+++......+|++++.+|..+ . .
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~---~-~------------ 241 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFK---D-P------------ 241 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTT---S-C------------
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCcccc---C-C------------
Confidence 446899999999999999999999999999998 8999999999866557899999999643 1 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~N 688 (771)
...+|+|++ ... -..+-+ ..+|+++++.|+|||.+++.
T Consensus 242 -------------------~~~~D~~~~----~~v-------lh~~~d~~~~~iL~~~~~al~pgg~lli~ 282 (353)
T 4a6d_A 242 -------------------LPEADLYIL----ARV-------LHDWADGKCSHLLERIYHTCKPGGGILVI 282 (353)
T ss_dssp -------------------CCCCSEEEE----ESS-------GGGSCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred -------------------CCCceEEEe----eee-------cccCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 134799987 110 111112 46799999999999977764
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-05 Score=91.59 Aligned_cols=179 Identities=9% Similarity=0.044 Sum_probs=112.8
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--------C--------CCeEEEEcCCHHHHH
Q 004164 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------G--------FHGITNVDFSKVVIS 105 (771)
Q Consensus 42 ~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--------g--------~~~V~~vDiS~~~i~ 105 (771)
....-|.....+...+.+++.. .+ .+|||++||+|.+...+++. + ..+++|+|+++.++.
T Consensus 222 k~~G~fyTP~~Vv~lmv~ll~p---~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~ 297 (544)
T 3khk_A 222 KQGGQYYTPKSIVTLIVEMLEP---YK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWK 297 (544)
T ss_dssp CCSTTTCCCHHHHHHHHHHHCC---CS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHH
T ss_pred ccCCeEeCCHHHHHHHHHHHhc---CC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHH
Confidence 3344455667888888888864 33 49999999999988776432 1 237999999999998
Q ss_pred HHHHHhhcCCC--CcEEEEeecCCCC-CCCCCccEEEeccccccc--cC---------------------cccchHHHHH
Q 004164 106 DMLRRNVRDRS--DMRWRVMDMTSMQ-FMDETFDVILDKGGLDAL--ME---------------------PELGHKLGNQ 159 (771)
Q Consensus 106 ~~~~~~~~~~~--~i~~~~~D~~~l~-~~~~sFDlVi~~~~l~~l--~~---------------------~~~~~~~~~~ 159 (771)
.++..+...+. ++.+.++|....+ +.+.+||+|+++-.+..- .. +... ..--.
T Consensus 298 lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~-~~~~~ 376 (544)
T 3khk_A 298 LAAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTG-NANFA 376 (544)
T ss_dssp HHHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTT-CTHHH
T ss_pred HHHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCc-chhHH
Confidence 77655443332 3334777766543 456799999987655421 00 0000 01125
Q ss_pred HHHHHHHccccCeEEEEEEcCc----c-hhhcchhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEEcCC
Q 004164 160 YLSEVKRLLKSGGKFVCLTLAE----S-HVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (771)
Q Consensus 160 ~l~~i~rvLkpGG~~ii~~~~~----~-~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (771)
++..+.+.|+|||++.++.... . .....+.... ..++...+..++...=.....+..+++++|.+.
T Consensus 377 Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k~ 448 (544)
T 3khk_A 377 WMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKN 448 (544)
T ss_dssp HHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCCS
T ss_pred HHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecCCC
Confidence 8899999999999998887431 1 1111222222 335555666776432223556778888888665
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-06 Score=93.27 Aligned_cols=115 Identities=10% Similarity=0.171 Sum_probs=72.2
Q ss_pred CCCcEEEEeccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCC-----CeeEEEcchHH--HHHhhccCC
Q 004164 541 KSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDK-----SLKVHITDGIK--FVREMKSSS 611 (771)
Q Consensus 541 ~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~-----r~~v~i~Dg~~--~l~~~~~~~ 611 (771)
...+||+||+|+|. +..++.. +..+|++||+++.+++.|+++..- .... +++++++|... +-.++..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~-- 123 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE-- 123 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT--
T ss_pred CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc--
Confidence 35789999999995 4444443 235899999999999999998621 0010 25667776621 0011110
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 612 ATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
.....+||+|++-. .- .....+.+. ..+|+.++++|+|||+|++....
T Consensus 124 -------------------------~~~~~~FD~V~~~~-~l----hy~~~~~~~--~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 124 -------------------------VFYFGKFNIIDWQF-AI----HYSFHPRHY--ATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp -------------------------TCCSSCEEEEEEES-CG----GGTCSTTTH--HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------------------------cccCCCeeEEEECc-hH----HHhCCHHHH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence 00135799998621 10 001112232 68999999999999999987654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-06 Score=87.83 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=76.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|.|.++..+... + .++++||+++.+++.|++.+. +++.+|..++...
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~-------~~~~~d~~~~~~~-------------- 88 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLD-------HVVLGDIETMDMP-------------- 88 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSS-------EEEESCTTTCCCC--------------
T ss_pred CCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCC-------cEEEcchhhcCCC--------------
Confidence 4578999999999999998888 5 799999999999999998762 6777877543111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....+||+|++.- ....+. -...+++.+++.|+|||.+++.....
T Consensus 89 -----------------~~~~~fD~v~~~~----~l~~~~------~~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 89 -----------------YEEEQFDCVIFGD----VLEHLF------DPWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp -----------------SCTTCEEEEEEES----CGGGSS------CHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred -----------------CCCCccCEEEECC----hhhhcC------CHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 1136799999731 111111 11689999999999999999977543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.22 E-value=2.9e-06 Score=94.59 Aligned_cols=105 Identities=11% Similarity=0.028 Sum_probs=77.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHH-------Hhhc---CCCCCCCeeEEEcchHH---HHHh
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLA-------EDYF---GFTQDKSLKVHITDGIK---FVRE 606 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA-------~~~F---g~~~~~r~~v~i~Dg~~---~l~~ 606 (771)
....+||+||+|.|.++..+...++..+|++||+++.+++.| ++.+ |+. -.+++++.+|+.. .+..
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-~~nV~~i~gD~~~~~~~~~~ 319 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEFSLKKSFVDNNRVAE 319 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEEEESSCSTTCHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-CCceEEEEcCcccccccccc
Confidence 345789999999999999999887777899999999999999 7664 421 1579999987752 1211
Q ss_pred hccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 607 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
.. ..||+|++...-- .+. -..+|+.+.+.|+|||.++
T Consensus 320 ~~--------------------------------~~FDvIvvn~~l~---------~~d--~~~~L~el~r~LKpGG~lV 356 (433)
T 1u2z_A 320 LI--------------------------------PQCDVILVNNFLF---------DED--LNKKVEKILQTAKVGCKII 356 (433)
T ss_dssp HG--------------------------------GGCSEEEECCTTC---------CHH--HHHHHHHHHTTCCTTCEEE
T ss_pred cc--------------------------------CCCCEEEEeCccc---------ccc--HHHHHHHHHHhCCCCeEEE
Confidence 11 4699999731110 111 2467889999999999998
Q ss_pred EE
Q 004164 687 VN 688 (771)
Q Consensus 687 ~N 688 (771)
+-
T Consensus 357 i~ 358 (433)
T 1u2z_A 357 SL 358 (433)
T ss_dssp ES
T ss_pred Ee
Confidence 74
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=6.1e-07 Score=94.41 Aligned_cols=100 Identities=11% Similarity=0.094 Sum_probs=78.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||++|+|.|.++..+... +..+|++||+||..++.|++...+. -.++++++.+|++++..
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~------------- 189 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG------------- 189 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------------
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-------------
Confidence 34578999999999888877776 4468999999999999999987321 25789999999987632
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
...||.|++|.- + ...+||..+.++|++||++.+-
T Consensus 190 ---------------------~~~~D~Vi~~~p-----------~---~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 190 ---------------------ENIADRILMGYV-----------V---RTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp ---------------------CSCEEEEEECCC-----------S---SGGGGHHHHHHHEEEEEEEEEE
T ss_pred ---------------------ccCCCEEEECCC-----------C---cHHHHHHHHHHHcCCCCEEEEE
Confidence 256999998531 1 1257899999999999998764
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.3e-07 Score=87.53 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=73.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
+.+.+||+||+|.|.++..+....|.++++++|+|+.++++|++.+... ...++++ .|...- ..
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~---~~---------- 112 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD---VY---------- 112 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH---HT----------
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc---CC----------
Confidence 5578999999999999999999999999999999999999999998321 1224554 566543 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccH--HHHHHHHHccCCCcEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG--SFLLTVKDALSEQGLFI 686 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~--~fl~~~~~~L~~~Gilv 686 (771)
...||+|+. .+. -++++. ..+..+.+.|+|+|+||
T Consensus 113 ---------------------~~~~DvVLa--~k~----------LHlL~~~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 113 ---------------------KGTYDVVFL--LKM----------LPVLKQQDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp ---------------------TSEEEEEEE--ETC----------HHHHHHTTCCHHHHHHTCEEEEEEE
T ss_pred ---------------------CCCcChhhH--hhH----------HHhhhhhHHHHHHHHHHhCCCCEEE
Confidence 267999997 222 122211 24558999999999988
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.21 E-value=9.8e-07 Score=89.84 Aligned_cols=108 Identities=23% Similarity=0.233 Sum_probs=78.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|.++..+.... .++++||+++.+++.|++.+.- ...+++++.+|..++ .
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~d~~~~----~------------ 97 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRS-QGLKPRLACQDISNL----N------------ 97 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHH-TTCCCEEECCCGGGC----C------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhh-cCCCeEEEecccccC----C------------
Confidence 55799999999999988888873 5899999999999999998732 112789999988653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
. ..+||+|++..+.- ..+ +..---..+|+.+++.|+|||.+++.+..
T Consensus 98 -----------------~-~~~fD~v~~~~~~l---~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 98 -----------------I-NRKFDLITCCLDST---NYI---IDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp -----------------C-SCCEEEEEECTTGG---GGC---CSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred -----------------c-cCCceEEEEcCccc---ccc---CCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 0 15699999832110 000 00001267999999999999999997753
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-06 Score=91.63 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=78.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|.|.++..+...+|..+++++|+ |.+++.|++.+.- ...++++++.+|..+ ...
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~---------- 247 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE---PLP---------- 247 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS---CCS----------
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC---CCC----------
Confidence 3457899999999999999999999889999999 9999999988621 124589999999854 111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..||+|++.- . -.++-+ ..+|+.+++.|+|||.+++.-
T Consensus 248 ----------------------~~~D~v~~~~--v---------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 288 (360)
T 1tw3_A 248 ----------------------RKADAIILSF--V---------LLNWPDHDAVRILTRCAEALEPGGRILIHE 288 (360)
T ss_dssp ----------------------SCEEEEEEES--C---------GGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ----------------------CCccEEEEcc--c---------ccCCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2499998821 1 111222 379999999999999888653
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-06 Score=95.36 Aligned_cols=73 Identities=8% Similarity=-0.124 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC--C-CCcEEEEeecCCC-CC-CCCCccEEEec
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--R-SDMRWRVMDMTSM-QF-MDETFDVILDK 141 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~--~-~~i~~~~~D~~~l-~~-~~~sFDlVi~~ 141 (771)
++.+|||+|||+|..+..|+..+. +|+++|+|+.+++.+++.+... + .+++++++|+.+. +. ++++||+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 478999999999999999988875 9999999999999887666433 3 5799999999885 32 34689999974
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=4.5e-06 Score=91.67 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=77.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHh----------hcCCCCCCCeeEEEcchHHHHHhhcc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED----------YFGFTQDKSLKVHITDGIKFVREMKS 609 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~----------~Fg~~~~~r~~v~i~Dg~~~l~~~~~ 609 (771)
....+||+||+|+|.++..+....+..+|++||+++.++++|++ .+|+. ..+++++.+|..+.--...
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~-~~rVefi~GD~~~lp~~d~- 249 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-HAEYTLERGDFLSEEWRER- 249 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-CCEEEEEECCTTSHHHHHH-
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-CCCeEEEECcccCCccccc-
Confidence 44578999999999999998887776579999999999999986 24552 3589999999876421110
Q ss_pred CCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 610 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
-..+|+|++. +. .. .+. -...|..+.+.|+|||.||+.
T Consensus 250 ------------------------------~~~aDVVf~N--n~-~F------~pd--l~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 250 ------------------------------IANTSVIFVN--NF-AF------GPE--VDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp ------------------------------HHTCSEEEEC--CT-TC------CHH--HHHHHHHHHTTSCTTCEEEES
T ss_pred ------------------------------cCCccEEEEc--cc-cc------Cch--HHHHHHHHHHcCCCCcEEEEe
Confidence 0358999982 11 00 111 245677888999999999974
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-05 Score=78.77 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=81.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..+.... ..+|++||+|+.+++.|++.+.... -+++++.+|+.++ .
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~----~------------ 110 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFK-GKFKVFIGDVSEF----N------------ 110 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGT-TSEEEEESCGGGC----C------------
T ss_pred CcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcC-CCEEEEECchHHc----C------------
Confidence 45689999999999999888873 3489999999999999999874311 1799999998763 2
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
..||+|++|.--... ..-....+++.+.+.| +|++++.+. .....+.+
T Consensus 111 --------------------~~~D~v~~~~p~~~~--------~~~~~~~~l~~~~~~l--~~~~~~~~~--~~~~~~~~ 158 (207)
T 1wy7_A 111 --------------------SRVDIVIMNPPFGSQ--------RKHADRPFLLKAFEIS--DVVYSIHLA--KPEVRRFI 158 (207)
T ss_dssp --------------------CCCSEEEECCCCSSS--------STTTTHHHHHHHHHHC--SEEEEEEEC--CHHHHHHH
T ss_pred --------------------CCCCEEEEcCCCccc--------cCCchHHHHHHHHHhc--CcEEEEEeC--CcCCHHHH
Confidence 369999996421110 1123478899999988 677765532 23333444
Q ss_pred HHHHHHh
Q 004164 701 ISRMKMV 707 (771)
Q Consensus 701 ~~~l~~v 707 (771)
...+.+.
T Consensus 159 ~~~l~~~ 165 (207)
T 1wy7_A 159 EKFSWEH 165 (207)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 4455443
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.4e-07 Score=93.66 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=76.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..+.... .+|++||+++.+++.|++.+... ..++++++.+|+.++..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------------- 141 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS-------------- 141 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--------------
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--------------
Confidence 46789999999999999998874 69999999999999999887321 13579999999998741
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||+|++|.- ..+...+. ..+..+++.|+|||++++.
T Consensus 142 --------------------~~~~D~v~~~~~----~~~~~~~~------~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 142 --------------------FLKADVVFLSPP----WGGPDYAT------AETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp --------------------GCCCSEEEECCC----CSSGGGGG------SSSBCTTTSCSSCHHHHHH
T ss_pred --------------------cCCCCEEEECCC----cCCcchhh------hHHHHHHhhcCCcceeHHH
Confidence 157999998531 11111111 1445678889999987754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-06 Score=87.80 Aligned_cols=110 Identities=10% Similarity=-0.075 Sum_probs=75.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcC-HHHHHHH---HhhcCCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELD-LTMLNLA---EDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD-~~v~~vA---~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||+||+|+|.++..|....|..+|++||++ +.|+++| ++...-..-++++++.+|+.++ ....
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~-------- 94 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFEL-------- 94 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGG--------
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhc--------
Confidence 4568999999999999999887888899999999 8888887 6654211124689999998765 1100
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
...+|.|.+...-... . .........+|+.+++.|+|||.|++
T Consensus 95 -----------------------~d~v~~i~~~~~~~~~---~--~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 95 -----------------------KNIADSISILFPWGTL---L--EYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp -----------------------TTCEEEEEEESCCHHH---H--HHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred -----------------------cCeEEEEEEeCCCcHH---h--hhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 1457777663210000 0 00001236789999999999999998
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-06 Score=89.74 Aligned_cols=100 Identities=15% Similarity=0.068 Sum_probs=74.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+.+||+||+|+|.++..+.. +..+|++||++|.+++.|++.. +++++++|+.++ .
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~----~----------- 89 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENL----A----------- 89 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSC----C-----------
T ss_pred CCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhC----C-----------
Confidence 4567999999999999998887 5679999999999999988765 689999988542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
.....||+|++-.-- ..+ + --..+|+.+.+.|+ ||.+++-.+.
T Consensus 90 ------------------~~~~~fD~v~~~~~l----~~~----~--~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 90 ------------------LPDKSVDGVISILAI----HHF----S--HLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp ------------------SCTTCBSEEEEESCG----GGC----S--SHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred ------------------CCCCCEeEEEEcchH----hhc----c--CHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 113679999983210 001 1 12689999999999 9966654433
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=9.2e-07 Score=96.85 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=73.8
Q ss_pred CCCCcEEEEecc-------ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHH--HHHhhccC
Q 004164 540 GKSVKAVVIGLG-------AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK--FVREMKSS 610 (771)
Q Consensus 540 ~~~~~vLviGlG-------~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~--~l~~~~~~ 610 (771)
.++.+||.||+| +|....++...+|..+|++||++|.+. + ..++++++++|+.+ |......
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~---~~~rI~fv~GDa~dlpf~~~l~~- 284 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V---DELRIRTIQGDQNDAEFLDRIAR- 284 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G---CBTTEEEEECCTTCHHHHHHHHH-
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h---cCCCcEEEEecccccchhhhhhc-
Confidence 356899999999 666666777778999999999999972 1 24789999999865 4433220
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 611 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
....||+|+.|.. . . ..+ ...+|+.+.+.|+|||+|++.
T Consensus 285 ----------------------------~d~sFDlVisdgs-H-~-------~~d--~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 285 ----------------------------RYGPFDIVIDDGS-H-I-------NAH--VRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp ----------------------------HHCCEEEEEECSC-C-C-------HHH--HHHHHHHHGGGEEEEEEEEEE
T ss_pred ----------------------------ccCCccEEEECCc-c-c-------chh--HHHHHHHHHHhcCCCeEEEEE
Confidence 0156999998531 1 0 111 267899999999999999985
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-06 Score=90.22 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=64.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCe--EEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~--V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
+.+...+.+.+.. .++.+|||||||+|.++. +.. +. + |+++|+++.+++.++++... .++++++++|+.++
T Consensus 7 ~~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~-~~~v~~i~~D~~~~ 79 (252)
T 1qyr_A 7 QFVIDSIVSAINP---QKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFL-GPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHHCC---CTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTT-GGGEEEECSCGGGC
T ss_pred HHHHHHHHHhcCC---CCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhcc-CCceEEEECchhhC
Confidence 3455566666654 577899999999999999 754 43 6 99999999999988665532 35799999999998
Q ss_pred CCCCC-----CccEEEeccc
Q 004164 129 QFMDE-----TFDVILDKGG 143 (771)
Q Consensus 129 ~~~~~-----sFDlVi~~~~ 143 (771)
++++. ..|.|+++-.
T Consensus 80 ~~~~~~~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 80 NFGELAEKMGQPLRVFGNLP 99 (252)
T ss_dssp CHHHHHHHHTSCEEEEEECC
T ss_pred CHHHhhcccCCceEEEECCC
Confidence 76432 3456666543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.9e-06 Score=91.34 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=81.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...++|++|+|+|.++..+.... |..+|+++|+||.+++.|++.+ |+ + +++++.+|+.++...
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~--~-~i~~~~~D~~~~~~~---------- 269 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL--S-WIRFLRADARHLPRF---------- 269 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC--T-TCEEEECCGGGGGGT----------
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC--C-ceEEEeCChhhCccc----------
Confidence 45689999999999999998887 7789999999999999999986 54 2 799999999876221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-CcCc--ccHHHHHHHHHccCCCcEEEEEe
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AADF--VEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p-p~~f--~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...||+|++|.-- |.... ...+ +-..+++.+++.|+|||.+++-.
T Consensus 270 -----------------------~~~~D~Ii~npPy-----g~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 270 -----------------------FPEVDRILANPPH-----GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp -----------------------CCCCSEEEECCCS-----CC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred -----------------------cCCCCEEEECCCC-----cCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 1358999996421 11100 1111 12679999999999999999754
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.5e-05 Score=80.73 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=96.6
Q ss_pred cCCCCcEEEEeccccHHH----HHHHHhCCCCcEEEEEcCHH-----------HHHHHHhhc----CCCCCC--CeeEEE
Q 004164 539 VGKSVKAVVIGLGAGLLP----MFLHECMPFVGIEAVELDLT-----------MLNLAEDYF----GFTQDK--SLKVHI 597 (771)
Q Consensus 539 ~~~~~~vLviGlG~G~l~----~~L~~~~p~~~i~~VEiD~~-----------v~~vA~~~F----g~~~~~--r~~v~i 597 (771)
.....+||.+|.|+|.-. ..+.+..|..+++.|.++.. .-++++..+ .+ ++. .++++.
T Consensus 94 ~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~-~~~~v~L~l~~ 172 (308)
T 3vyw_A 94 ERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEY-EGERLSLKVLL 172 (308)
T ss_dssp HCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEE-ECSSEEEEEEE
T ss_pred CCCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccc-cCCcEEEEEEe
Confidence 355678999999999422 12345567666555544321 122222111 11 123 467889
Q ss_pred cchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHH
Q 004164 598 TDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD 677 (771)
Q Consensus 598 ~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~ 677 (771)
||+.+.+.+.. +.++|+|++|.+++.. .+++++.++|+.+.+
T Consensus 173 GDa~~~l~~l~-------------------------------~~~~Da~flDgFsP~k-------NPeLWs~e~f~~l~~ 214 (308)
T 3vyw_A 173 GDARKRIKEVE-------------------------------NFKADAVFHDAFSPYK-------NPELWTLDFLSLIKE 214 (308)
T ss_dssp SCHHHHGGGCC-------------------------------SCCEEEEEECCSCTTT-------SGGGGSHHHHHHHHT
T ss_pred chHHHHHhhhc-------------------------------ccceeEEEeCCCCccc-------CcccCCHHHHHHHHH
Confidence 99999988764 2479999999999853 678999999999999
Q ss_pred ccCCCcEEEEEeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEecCCC
Q 004164 678 ALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSES 731 (771)
Q Consensus 678 ~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~~ 731 (771)
+++|||+|+ ..+.... |-..|+++==.|...+-...--+.++|+....
T Consensus 215 ~~~pgg~la--TYtaag~----VRR~L~~aGF~V~k~~G~g~KReml~A~~~~~ 262 (308)
T 3vyw_A 215 RIDEKGYWV--SYSSSLS----VRKSLLTLGFKVGSSREIGRKRKGTVASLKAP 262 (308)
T ss_dssp TEEEEEEEE--ESCCCHH----HHHHHHHTTCEEEEEECC---CEEEEEESSSC
T ss_pred HhCCCcEEE--EEeCcHH----HHHHHHHCCCEEEecCCCCCCCceeEEecCCC
Confidence 999999998 4555554 33456666445666654334456788876543
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.6e-06 Score=93.92 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CC--cEEEEeecCCCC--CCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SD--MRWRVMDMTSMQ--FMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~--i~~~~~D~~~l~--~~~~sFDlVi~ 140 (771)
++.+|||++||+|.++..++.. |..+|+++|+++.+++.+++.....+ .+ ++++++|+.++- ...+.||+|+.
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 5789999999999999999885 44689999999999998876665444 23 899999986642 12467999996
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.- .... ..++..+.+.|++||+++++.
T Consensus 132 DP----~g~~-------~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP----FGTP-------VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC----SSCC-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----CcCH-------HHHHHHHHHHhCCCCEEEEEe
Confidence 54 1111 368889999999999776665
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.3e-06 Score=86.65 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=76.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..|... ..++++||+++.+++.|++... . .++.+|+.+. .
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~---~---~~~~~d~~~~----~------------ 109 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV---K---NVVEAKAEDL----P------------ 109 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC---S---CEEECCTTSC----C------------
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC---C---CEEECcHHHC----C------------
Confidence 4578999999999999988876 3589999999999999999864 1 2777776542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
.....||+|++...-- .. ... -..+|+.+++.|+|||.+++...+..
T Consensus 110 -----------------~~~~~fD~v~~~~~~~------~~-~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 110 -----------------FPSGAFEAVLALGDVL------SY-VEN--KDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp -----------------SCTTCEEEEEECSSHH------HH-CSC--HHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred -----------------CCCCCEEEEEEcchhh------hc-ccc--HHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 1136799999721000 00 011 47899999999999999999876543
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.14 E-value=6e-05 Score=86.51 Aligned_cols=182 Identities=11% Similarity=-0.005 Sum_probs=116.4
Q ss_pred ccccccchhHHHHHHHHhhCCCC-CCCCCeEEEEcCCcchhHHHHHhc----CCCeEEEEcCCHHHHHHHHHHhhcCC--
Q 004164 43 SFEWYAEWPQLRDPLISLIGAPT-SSPPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDR-- 115 (771)
Q Consensus 43 ~~ew~~~~~~l~~~l~~~l~~~~-~~~~~~ILDiGCG~G~ls~~La~~----g~~~V~~vDiS~~~i~~~~~~~~~~~-- 115 (771)
...-|.....+...+.+++.... +.++.+|||++||+|.+...+++. +..+++|+|+++.++..++..+.-.+
T Consensus 195 ~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~ 274 (542)
T 3lkd_A 195 KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP 274 (542)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred cCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC
Confidence 33445556678888888876311 246789999999999998777765 24589999999999987765543333
Q ss_pred -CCcEEEEeecCCC--C-CCCCCccEEEeccccccccCccc-----------c-----hHHHHHHHHHHHHccc-cCeEE
Q 004164 116 -SDMRWRVMDMTSM--Q-FMDETFDVILDKGGLDALMEPEL-----------G-----HKLGNQYLSEVKRLLK-SGGKF 174 (771)
Q Consensus 116 -~~i~~~~~D~~~l--~-~~~~sFDlVi~~~~l~~l~~~~~-----------~-----~~~~~~~l~~i~rvLk-pGG~~ 174 (771)
.++.+.++|.... | +....||+|+++-.+..-..... + ...--.++..+.+.|+ +||++
T Consensus 275 ~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~ 354 (542)
T 3lkd_A 275 IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVM 354 (542)
T ss_dssp GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEE
T ss_pred cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeE
Confidence 3578899998876 3 45678999998754431110000 0 0001258999999999 99999
Q ss_pred EEEEcCcchh----hcchhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEEcC
Q 004164 175 VCLTLAESHV----LGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKEN 224 (771)
Q Consensus 175 ii~~~~~~~~----~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~ 224 (771)
.++....--+ ...+.... ..++...+..++..-=.....+..+++++|.+
T Consensus 355 a~VlP~g~Lf~~~~~~~iRk~Lle~~~l~~II~LP~~lF~~t~i~t~Ilvl~K~k 409 (542)
T 3lkd_A 355 AIVLPHGVLFRGNAEGTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKKNR 409 (542)
T ss_dssp EEEEETHHHHCCTHHHHHHHHHHHTTCEEEEEECCSSCSSSCCCCEEEEEECSSC
T ss_pred EEEecchHhhCCchhHHHHHHHHhCCceeEEEEccccccCCCCCcEEEEEEecCC
Confidence 8887542111 11222222 33555566667643222455667888887755
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.6e-05 Score=77.17 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=70.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..+... +..+|++||+|+.+++.|++.+. +++++.+|+.++ .
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~----~------------ 108 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEI----S------------ 108 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGC----C------------
T ss_pred CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHC----C------------
Confidence 4578999999999999988877 54579999999999999999875 689999998763 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
.+||+|++|.--.. . ..-....+++.+.+.| |+++++
T Consensus 109 --------------------~~~D~v~~~~p~~~----~----~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 109 --------------------GKYDTWIMNPPFGS----V----VKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp --------------------CCEEEEEECCCC---------------CHHHHHHHHHHE--EEEEEE
T ss_pred --------------------CCeeEEEECCCchh----c----cCchhHHHHHHHHHhc--CcEEEE
Confidence 46999999531110 0 1112367899999998 454443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-06 Score=92.10 Aligned_cols=117 Identities=13% Similarity=0.067 Sum_probs=79.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-------CCCCeeEEEcchHHHHHhhccCCcc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-------QDKSLKVHITDGIKFVREMKSSSAT 613 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-------~~~r~~v~i~Dg~~~l~~~~~~~~~ 613 (771)
.+.+||+||+|+|.+...+... +..++++||+++.+++.|++.+.-. ...+++++++|..+..-...
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~----- 107 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDK----- 107 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTT-----
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhh-----
Confidence 5578999999999888877774 5679999999999999999886310 13478999999865310000
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-ccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 614 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
+ ......||+|++.. . ... | .... --..+|+.+++.|+|||+|++.....
T Consensus 108 -----~-----------------~~~~~~fD~V~~~~--~--l~~--~-~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 108 -----F-----------------RDPQMCFDICSCQF--V--CHY--S-FESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp -----C-----------------SSTTCCEEEEEEET--C--GGG--G-GGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred -----c-----------------ccCCCCEEEEEEec--c--hhh--c-cCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 0 00124799999832 1 000 0 0011 11589999999999999999987543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5e-06 Score=96.45 Aligned_cols=100 Identities=19% Similarity=0.115 Sum_probs=72.8
Q ss_pred CCeEEEEcCCcchhHHHHHhc---CCC--eEEEEcCCHHHHHHHHHHhhc--CCCCcEEEEeecCCCCCCCCCccEEEec
Q 004164 69 PPQILVPGCGNSRLSEHLYDA---GFH--GITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~---g~~--~V~~vDiS~~~i~~~~~~~~~--~~~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
...|||+|||+|.++...+++ +.. +|++|+-|+.+.. +++.... ....|+++.+|+++...+ +++|+|++.
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~-a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVV-TLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHH-HHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHH-HHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 357999999999996544443 322 6899999997664 4443322 336799999999998776 789999987
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
..-+.+. .+. +..++....|.|||||+++
T Consensus 436 wMG~fLl-~E~----mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFAD-NEL----SPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTBG-GGC----HHHHHHHHGGGEEEEEEEE
T ss_pred cCccccc-ccC----CHHHHHHHHHhcCCCcEEc
Confidence 6544433 221 3467888899999999875
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.3e-06 Score=86.99 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=78.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHH------HHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCC
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLT------MLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSS 611 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~------v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~ 611 (771)
....+||+||+|.|.++..+...+ |..+|++||+++. +++.|++.+.- ...++++++.+| ++.....
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~--- 116 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT--NLSDDLG--- 116 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC--CTTTCCG---
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC--hhhhccC---
Confidence 455789999999999999988885 6679999999997 99999998732 123679999998 2211100
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 612 ATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
+....+||+|++.- . ...+ +. ...+++.++.+++|||.+++.-+.
T Consensus 117 -------------------------~~~~~~fD~v~~~~--~--l~~~--~~----~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 117 -------------------------PIADQHFDRVVLAH--S--LWYF--AS----ANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp -------------------------GGTTCCCSEEEEES--C--GGGS--SC----HHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred -------------------------CCCCCCEEEEEEcc--c--hhhC--CC----HHHHHHHHHHHhCCCCEEEEEEec
Confidence 01136799999732 1 0001 11 134777778878889999987654
Q ss_pred C
Q 004164 692 R 692 (771)
Q Consensus 692 ~ 692 (771)
.
T Consensus 162 ~ 162 (275)
T 3bkx_A 162 M 162 (275)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-06 Score=91.69 Aligned_cols=79 Identities=13% Similarity=0.089 Sum_probs=61.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCH-------HHHHHHHHHhhcCC--CCcEEEEeecCCC-C-CCC--C
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK-------VVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-FMD--E 133 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~-------~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~~~--~ 133 (771)
.++.+|||+|||+|.++..|+..|. +|+++|+|+ .+++.+++.....+ .+++++++|+.++ + +++ +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 3568999999999999999999876 899999999 88887755432222 3599999999875 3 444 7
Q ss_pred CccEEEecccccc
Q 004164 134 TFDVILDKGGLDA 146 (771)
Q Consensus 134 sFDlVi~~~~l~~ 146 (771)
+||+|++.-.+.+
T Consensus 161 ~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 161 KPDIVYLDPMYPE 173 (258)
T ss_dssp CCSEEEECCCC--
T ss_pred CccEEEECCCCCC
Confidence 8999998765544
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-06 Score=90.44 Aligned_cols=62 Identities=19% Similarity=0.098 Sum_probs=51.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIK 602 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~ 602 (771)
.+.+||+||+|+|.+...+....|..+|++||+++.+++.|++.... ...++++++.+|+.+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 127 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKT 127 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhh
Confidence 45689999999999888888777778999999999999999998721 124579999999765
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.1e-05 Score=82.26 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=80.4
Q ss_pred CCCcEEEEeccc---cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGA---GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~---G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...++|+||+|. |.+...+....|..+|++||+||.|++.||..+.-....+++++.+|..+.-.-..... .+ .
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~-~~--~ 154 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPE-LR--D 154 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHH-HH--T
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccc-cc--c
Confidence 346899999995 66777777788999999999999999999998853223579999999987521110000 00 0
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc-----HHHHHHHHHccCCCcEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-----GSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~-----~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.+ . -+..+++++. . .-+|+. ...++.+.+.|+|||.|++...+.
T Consensus 155 ~~-----------------D-~~~p~av~~~----a---------vLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 155 TL-----------------D-LTRPVALTVI----A---------IVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp TC-----------------C-TTSCCEEEEE----S---------CGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred cc-----------------C-cCCcchHHhh----h---------hHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 00 0 0122334433 1 223332 468999999999999999987776
Q ss_pred C
Q 004164 693 S 693 (771)
Q Consensus 693 ~ 693 (771)
+
T Consensus 204 d 204 (277)
T 3giw_A 204 E 204 (277)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-05 Score=83.63 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=79.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEc-CHHHHHHHHhhc-----CCCC-C----CCeeEEEcc---hHHHHH-
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVEL-DLTMLNLAEDYF-----GFTQ-D----KSLKVHITD---GIKFVR- 605 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEi-D~~v~~vA~~~F-----g~~~-~----~r~~v~i~D---g~~~l~- 605 (771)
...+||+||+|+|.++..+.... ..+|++||+ ++.+++.|++.. .... + ++++++..| ...-+.
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 45689999999999998888763 348999999 999999999887 2110 1 367777433 222221
Q ss_pred hhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCcccHHHHHHHHHccC---C
Q 004164 606 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALS---E 681 (771)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~---~ 681 (771)
... ..+||+|+. |+.-. ++ .-..+++.++++|+ |
T Consensus 158 ~~~-------------------------------~~~fD~Ii~~dvl~~---------~~--~~~~ll~~l~~~Lk~~~p 195 (281)
T 3bzb_A 158 CTG-------------------------------LQRFQVVLLADLLSF---------HQ--AHDALLRSVKMLLALPAN 195 (281)
T ss_dssp HHS-------------------------------CSSBSEEEEESCCSC---------GG--GHHHHHHHHHHHBCCTTT
T ss_pred hcc-------------------------------CCCCCEEEEeCcccC---------hH--HHHHHHHHHHHHhcccCC
Confidence 111 257999987 44221 11 13679999999999 9
Q ss_pred --CcEEEEEeccCChh---HHHHHHHHHHHh
Q 004164 682 --QGLFIVNLVSRSQA---TKDMVISRMKMV 707 (771)
Q Consensus 682 --~Gilv~Nl~~~~~~---~~~~v~~~l~~v 707 (771)
||.+++-+..+... ....++..+++.
T Consensus 196 ~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~ 226 (281)
T 3bzb_A 196 DPTAVALVTFTHHRPHLAERDLAFFRLVNAD 226 (281)
T ss_dssp CTTCEEEEEECC--------CTHHHHHHHHS
T ss_pred CCCCEEEEEEEeeecccchhHHHHHHHHHhc
Confidence 99877755443321 123445555554
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.2e-06 Score=90.24 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=86.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEc----CHHHHHHH-HhhcCCCCCCCeeEEEc-chHHHHHhhccCCccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVEL----DLTMLNLA-EDYFGFTQDKSLKVHIT-DGIKFVREMKSSSATD 614 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEi----D~~v~~vA-~~~Fg~~~~~r~~v~i~-Dg~~~l~~~~~~~~~~ 614 (771)
...+||+||+|.|.++.+|.+. .+|++||+ .+..++.+ .+..+ .+++.++.+ |...+ .
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~D~~~l----~------ 145 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYG---WNLVRLQSGVDVFFI----P------ 145 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTT---GGGEEEECSCCTTTS----C------
T ss_pred CCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcC---CCCeEEEeccccccC----C------
Confidence 3468999999999999999887 37999999 45333221 11111 256888877 66532 1
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc----HHHHHHHHHccCCCcEEEEEec
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
..+||+|+.|+... .|. .+.+ ..+|..+.+.|+|||.|++.+.
T Consensus 146 -------------------------~~~fD~V~sd~~~~---~g~-----~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 146 -------------------------PERCDTLLCDIGES---SPN-----PTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp -------------------------CCCCSEEEECCCCC---CSS-----HHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred -------------------------cCCCCEEEECCccc---cCc-----chhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 24799999986332 111 1111 1478889999999999999887
Q ss_pred cCChhHHHHHHHHHHHhccceEEee
Q 004164 691 SRSQATKDMVISRMKMVFNHLFCLQ 715 (771)
Q Consensus 691 ~~~~~~~~~v~~~l~~vF~~v~~~~ 715 (771)
.........++..++..|..+....
T Consensus 193 ~~~~~~~~~~l~~l~~~f~~v~~~k 217 (305)
T 2p41_A 193 NPYMSSVIEKMEALQRKHGGALVRN 217 (305)
T ss_dssp CCCSHHHHHHHHHHHHHHCCEEECC
T ss_pred CCCCchHHHHHHHHHHHcCCEEEec
Confidence 6654445677888999999876644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 771 | ||||
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 3e-08 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 6e-07 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 7e-07 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 3e-06 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 6e-06 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 8e-06 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 1e-05 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 2e-05 | |
| d2b2ca1 | 312 | c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab | 2e-05 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 3e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 5e-05 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 1e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 4e-04 | |
| d2o07a1 | 285 | c.66.1.17 (A:16-300) Spermidine synthase {Human (H | 6e-04 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 6e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 9e-04 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 0.001 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.001 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.003 |
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.4 bits (127), Expect = 3e-08
Identities = 40/227 (17%), Positives = 74/227 (32%), Gaps = 28/227 (12%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
D + W + IGD+ AE+ + L+ L+ ++L CG S
Sbjct: 23 DGEAARVWQLY-----IGDTRSRTAEY---KAWLLGLLRQH---GCHRVLDVACGTGVDS 71
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM---------DET 134
L + GF +T+VD S ++ L+ R + + + ++ D
Sbjct: 72 IMLVEEGFS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF 130
Query: 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF 194
VI L + + L + +++ GG V ++L
Sbjct: 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYIL-------ST 183
Query: 195 GWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLD 241
G I KS + T ++ + + V L T + D
Sbjct: 184 GCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRD 230
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 48.4 bits (114), Expect = 6e-07
Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 7/153 (4%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
++ E L ++ A P + L GCGN R S +L G+ +T D + +
Sbjct: 7 NYFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYD-VTAWDKNPASM 65
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164
+++ R + D + + D +D IL + L + ++ +
Sbjct: 66 ANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTI-----PGLIANM 120
Query: 165 KRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 197
+R K GG + + ++ F F +K
Sbjct: 121 QRCTKPGGYNLIVAAMDTPDFPCTVG-FPFAFK 152
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 49.2 bits (116), Expect = 7e-07
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 19/138 (13%)
Query: 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKV 102
F + LRD +++ + +L GCG + DA +D
Sbjct: 60 FLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDV--- 116
Query: 103 VISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLS 162
++ + + + V + F D + D I+
Sbjct: 117 -SKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP--------------CKAE 161
Query: 163 EVKRLLKSGGKFVCLTLA 180
E+ R++K GG + T
Sbjct: 162 ELARVVKPGGWVITATPG 179
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 47.2 bits (111), Expect = 3e-06
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124
+ P I+ GCG L L G T +D + ++++ D + D
Sbjct: 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD 85
Query: 125 MTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178
T ++ D+ I L + PE L ++ +K GGK +C
Sbjct: 86 ATEIELNDKYDIAICH-AFLLHMTTPE-------TMLQKMIHSVKKGGKIICFE 131
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (107), Expect = 6e-06
Identities = 22/168 (13%), Positives = 48/168 (28%), Gaps = 22/168 (13%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
+ E W + F L+ L + + ++ P CG + +
Sbjct: 9 TLEEWQDKWVNGKTA--FHQEQGHQLLKKHLDTFLKGK---SGLRVFFPLCGKAVEMKWF 63
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146
D G + V+ S++ I + S+ + + F + ++ L +
Sbjct: 64 ADRGHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIP-GTKVFKSSSGNISLYCCSIFD 121
Query: 147 LMEPELGH---------------KLGNQYLSEVKRLLKSGGKFVCLTL 179
L +G Y + LL +++ L
Sbjct: 122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 45.7 bits (107), Expect = 8e-06
Identities = 27/195 (13%), Positives = 60/195 (30%), Gaps = 34/195 (17%)
Query: 10 SSSSSATDLLQTLGDFTSK------ENWDKFFTIRGIGDSFEWYAE-------------- 49
S +S+ +L + D K E W T WY +
Sbjct: 7 SKEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSG 66
Query: 50 ----WPQLRDPLIS----LIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101
+ D I I + + L G G R++++L + ++ K
Sbjct: 67 VLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK 126
Query: 102 VVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYL 161
++ + +R + ++ + M + T+D+I+ + L + + +
Sbjct: 127 HML-EEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVK-----FF 180
Query: 162 SEVKRLLKSGGKFVC 176
++ L G
Sbjct: 181 KHCQQALTPNGYIFF 195
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.1 bits (105), Expect = 1e-05
Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 11/188 (5%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ + + F +S E+ + L L+ + ++L CG S L D
Sbjct: 3 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLED 57
Query: 89 AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148
GF + D S+ +I S++ + V D + F D+TFD ++ +
Sbjct: 58 YGFEVVGV-DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 116
Query: 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSS 208
EL NQ EV+R+LK GKF+ +L L G K + +
Sbjct: 117 PLEL-----NQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQE 171
Query: 209 SEPSLQTF 216
+ F
Sbjct: 172 ERTVVIEF 179
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 10/117 (8%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN-----VRDRSDMRWRV 122
P ++LVP CG S+ L G+H + + S+ + + + D +
Sbjct: 20 PGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYA 78
Query: 123 MDMTSMQFMDETFDVILDKGGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFV 175
+ D D G A + + +Y+ ++ L+ +
Sbjct: 79 APGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 135
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Score = 44.7 bits (105), Expect = 2e-05
Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----DKSLKVHITD 599
+ ++IG G G + + + + E+D ++++A+ + L + D
Sbjct: 109 RVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD 168
Query: 600 GIKFVREMKSS 610
G +F++ K+
Sbjct: 169 GFEFLKNHKNE 179
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 20/126 (15%), Positives = 35/126 (27%)
Query: 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113
P + + A SS ++L G G + + + +A ++ + V + R
Sbjct: 39 ETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR 98
Query: 114 DRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 173
+ + L E N + RLLK GG
Sbjct: 99 QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV 158
Query: 174 FVCLTL 179
L
Sbjct: 159 LTYCNL 164
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 43.0 bits (100), Expect = 5e-05
Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 9/112 (8%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126
++L G G + VD +K ++ +
Sbjct: 15 RAEHRVLDIGAGAGHTALAFSPYVQE-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 73
Query: 127 SMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177
++FD+I + + + + EV R+LK G+F+ +
Sbjct: 74 ESLPFPDDSFDIITCRYAAHHFSDVR-------KAVREVARVLKQDGRFLLV 118
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 29/252 (11%), Positives = 56/252 (22%), Gaps = 59/252 (23%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
F ++ +++ G ++ + L P ++ G G +
Sbjct: 10 HFLPRDYLATYYSFDGSPSPEAEMLKF--NLECLHKTF-GPGGLQGDTLIDIGSGPTIYQ 66
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-------------------- 123
F IT DF+ ++ + ++ W
Sbjct: 67 VLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126
Query: 124 ---------------DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL 168
+ D +L ++ ++ L + LL
Sbjct: 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR---AALCNLASLL 183
Query: 169 KSGGKFVCLTLAESH---VLGLLFPKFRFGWK-------------MSVHAIPQKSSSEPS 212
K GG V V F + PQ S +
Sbjct: 184 KPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNA 243
Query: 213 LQT--FMVVADK 222
+VA K
Sbjct: 244 ANNGVCCIVARK 255
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 8/109 (7%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMT 126
P +IL G G+ + T +D S + + RR S+ + +
Sbjct: 33 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 92
Query: 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
+ +E DV G + + LK GG +
Sbjct: 93 AGYVANEKCDVAACVGATWIAGGFA-------GAEELLAQSLKPGGIML 134
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 40.1 bits (93), Expect = 4e-04
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 8/117 (6%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126
+IL G H+ D G + ++++ ++ ++L + +
Sbjct: 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK 133
Query: 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183
++ + V D + E + K LK GG + A S
Sbjct: 134 PQEYANIVEKV-------DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI 183
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 6e-04
Identities = 12/71 (16%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQDKSLKVHITD 599
K ++IG G G + + + + E+D ++ +++ + L +H+ D
Sbjct: 81 KVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGD 140
Query: 600 GIKFVREMKSS 610
G +F+++ + +
Sbjct: 141 GFEFMKQNQDA 151
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 6e-04
Identities = 17/144 (11%), Positives = 38/144 (26%), Gaps = 24/144 (16%)
Query: 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI-----------------SDML 108
+ +IL G G + + V + V+ S++
Sbjct: 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLE 97
Query: 109 RRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL 168
+ + + +D I L + + K LL
Sbjct: 98 NVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLK-------FFHSLL 150
Query: 169 KSGGKFVCLTLAESHVLGLLFPKF 192
+ K + + ++ S L+ K+
Sbjct: 151 GTNAKMLIIVVSGSSGWDKLWKKY 174
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 39.5 bits (91), Expect = 9e-04
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 72 ILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQ 129
+L GCG AG VD ++V I+D R N++ R + +R D
Sbjct: 28 VLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 87
Query: 130 F-MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185
+ + FDVI + + R L+ GG F+ + +L
Sbjct: 88 MDLGKEFDVISSQFSFHYAFSTSESLD---IAQRNIARHLRPGGYFIMTVPSRDVIL 141
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 39.3 bits (90), Expect = 0.001
Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 14/147 (9%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
E +D + E + + ++L CG + L +
Sbjct: 10 EYYDTIYR-----RRIERVKAEIDFVEEIFKEDAKR---EVRRVLDLACGTGIPTLELAE 61
Query: 89 AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148
G+ + +++ R ++R+ + FD +
Sbjct: 62 RGYEVVGLDLHEEMLRVAR--RKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYF 119
Query: 149 EPELGHKLGNQYLSEVKRLLKSGGKFV 175
+ E K S+V LK GG F+
Sbjct: 120 DEEDLRK----LFSKVAEALKPGGVFI 142
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 0.001
Identities = 15/122 (12%), Positives = 34/122 (27%), Gaps = 17/122 (13%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNVRDRSDMRW----- 120
+ + G G ++ + A V+ + + + R M+W
Sbjct: 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH 209
Query: 121 -----RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175
D S ++ + + + + + L E +K GG+ V
Sbjct: 210 AEYTLERGDFLSEEWRERIANTSV------IFVNNFAFGPEVDHQLKERFANMKEGGRIV 263
Query: 176 CL 177
Sbjct: 264 SS 265
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 0.003
Identities = 21/197 (10%), Positives = 45/197 (22%), Gaps = 42/197 (21%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
F + + + ++ A ++ G G +
Sbjct: 12 RFEPRAYLRNNY--APPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQ 69
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWR-----VMDMTSM---------- 128
+ F IT DF +V ++ R + W +
Sbjct: 70 LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129
Query: 129 ----------------------QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR 166
D ++ L+A+ + + L +
Sbjct: 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQ---RALDHITT 186
Query: 167 LLKSGGKFVCLTLAESH 183
LL+ GG + + E
Sbjct: 187 LLRPGGHLLLIGALEES 203
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 771 | |||
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 99.92 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.92 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.92 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.92 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 99.91 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 99.91 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 99.91 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.77 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.75 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.74 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.73 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.7 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.68 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.67 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.66 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.65 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.64 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.63 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.63 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.62 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.61 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.59 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.59 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.57 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.56 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.55 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.51 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.5 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.49 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.47 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.45 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.43 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.42 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.4 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.4 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.39 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.39 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.35 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.34 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.33 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.32 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.31 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.3 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.25 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.25 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.25 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.24 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.24 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.21 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.19 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.19 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.18 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.17 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.13 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.12 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.12 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.11 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.09 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.04 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.01 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.97 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.95 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.94 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.93 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.9 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.9 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.9 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.9 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.89 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.89 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.87 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.87 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.83 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.83 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.83 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.83 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.81 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.78 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.78 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.78 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.77 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.73 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.72 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.72 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.72 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.71 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.71 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.7 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.7 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.7 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.69 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.69 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.69 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.68 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.68 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.67 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.66 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.65 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.62 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.57 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.56 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.56 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.56 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.56 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.56 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.55 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.54 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.54 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.53 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.53 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.52 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.51 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.51 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.51 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.5 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.49 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.48 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.47 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.45 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.45 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.43 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.43 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.42 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.42 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.4 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.38 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.38 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.37 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.37 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.36 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.34 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.32 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.31 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.3 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.3 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.27 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.27 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.27 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.27 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.22 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.22 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.2 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.13 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.12 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.12 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.11 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.11 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.08 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.06 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.04 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.92 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.92 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.91 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.91 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.9 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.89 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 97.83 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.81 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.8 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.8 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.76 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.75 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.7 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.65 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.64 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.6 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.59 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.56 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.56 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.56 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.53 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.53 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.44 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.42 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.41 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.38 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.35 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.23 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.22 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.21 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.14 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.1 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.06 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.04 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.02 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.96 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.95 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.92 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.91 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.78 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 96.67 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.66 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.63 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.52 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.45 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.42 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.41 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.18 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 96.1 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.05 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.03 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.83 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.72 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.72 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.63 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.61 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.57 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.51 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.51 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.49 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.21 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.2 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.15 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.04 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.01 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.85 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.85 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.35 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.28 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.25 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.92 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.7 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.65 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 93.53 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.37 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 93.31 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.21 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.98 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.84 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.63 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.06 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.78 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.7 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 91.69 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.48 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.2 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 90.93 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.68 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.92 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.87 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 89.63 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 89.53 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 89.45 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 89.32 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 89.28 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 89.18 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.1 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 89.01 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.0 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 88.91 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 88.79 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 88.1 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 88.08 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.54 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 87.36 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 87.33 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 87.07 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 86.98 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 86.96 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.54 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 86.54 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 86.14 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.84 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.75 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 84.95 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.64 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 84.35 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 84.22 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 84.17 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 84.05 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 83.86 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 83.66 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.56 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 83.45 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 82.91 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 82.77 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 82.19 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 81.92 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 81.86 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 81.79 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 81.74 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 81.74 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 81.62 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 81.41 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 81.3 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 80.75 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 80.56 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 80.48 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 80.25 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 80.25 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 80.06 |
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7e-25 Score=229.64 Aligned_cols=168 Identities=18% Similarity=0.267 Sum_probs=131.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc----CCCCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F----g~~~~~ 591 (771)
..||. |++++++..+ +.+++||+||+|+|++++.+.++.+..+|++|||||.|+++|++|| +..+++
T Consensus 62 ~~Yhe-~l~h~~l~~~--------~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~ 132 (285)
T d2o07a1 62 FSYQE-MIANLPLCSH--------PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSS 132 (285)
T ss_dssp HHHHH-HHHHHHHTTS--------SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred HHHHH-HhccHhhhhC--------cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCC
Confidence 56886 5556666655 7889999999999999999999988889999999999999999999 334789
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
|++++++||++||++.. .+||+||+|+.++.. |+..+++.+|
T Consensus 133 rv~i~~~Da~~~l~~~~--------------------------------~~yDvIi~D~~~p~~------~~~~L~t~eF 174 (285)
T d2o07a1 133 KLTLHVGDGFEFMKQNQ--------------------------------DAFDVIITDSSDPMG------PAESLFKESY 174 (285)
T ss_dssp TEEEEESCHHHHHHTCS--------------------------------SCEEEEEEECC-----------------CHH
T ss_pred CceEEEccHHHHHhcCC--------------------------------CCCCEEEEcCCCCCC------cccccccHHH
Confidence 99999999999998743 679999999877532 5789999999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEee--ecC---CccEEEEEecCC
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE---DVNLVLFGLSSE 730 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~---~~N~Vl~a~~~~ 730 (771)
++.++++|+|+|++++|..+. .......+.++++++|+++..+. ++. +...+++|++.+
T Consensus 175 ~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~~~~g~w~f~~aSk~p 240 (285)
T d2o07a1 175 YQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNP 240 (285)
T ss_dssp HHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred HHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeeeEEeeeeeecCCCCeEEEEEECCc
Confidence 999999999999999998664 45566788999999999876544 332 234578898876
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.92 E-value=1.1e-23 Score=220.11 Aligned_cols=171 Identities=22% Similarity=0.334 Sum_probs=134.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-------
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 588 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~------- 588 (771)
..||..|+. +++..+ +++.+||+||+|+|++++.+..+ +..+|++|||||.|+++|++||++.
T Consensus 56 ~~Yhe~l~~-~~l~~~--------~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~ 125 (276)
T d1mjfa_ 56 RSYHEPLVH-PAMLAH--------PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM 125 (276)
T ss_dssp HHHHHHHHH-HHHHHS--------SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHH
T ss_pred hHHHHHhhc-chhhcC--------CCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhh
Confidence 579987764 444443 78899999999999998888776 4469999999999999999999764
Q ss_pred ---CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC
Q 004164 589 ---QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD 665 (771)
Q Consensus 589 ---~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~ 665 (771)
.++|++++++||++|+++. ++||+||+|++.+.. |+..
T Consensus 126 ~~~~d~rv~i~~~Da~~~l~~~---------------------------------~~yDvIi~D~~~~~~------~~~~ 166 (276)
T d1mjfa_ 126 LNGKHEKAKLTIGDGFEFIKNN---------------------------------RGFDVIIADSTDPVG------PAKV 166 (276)
T ss_dssp HTTCCSSEEEEESCHHHHHHHC---------------------------------CCEEEEEEECCCCC-----------
T ss_pred hccCCCCceEEEChHHHHHhcc---------------------------------CCCCEEEEeCCCCCC------Cccc
Confidence 4799999999999999752 569999999976532 5789
Q ss_pred cccHHHHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEeee--cC--CccEEEEEecCCCcCCC
Q 004164 666 FVEGSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--EE--DVNLVLFGLSSESCIKD 735 (771)
Q Consensus 666 f~~~~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~~--~~N~Vl~a~~~~~~~~~ 735 (771)
|++.+|++.++++|+|+|++++|..+. .......++.+|+++|++++.+.+ +. +.+..++|++.+.....
T Consensus 167 L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y~~~w~f~~as~~~~~~~~ 242 (276)
T d1mjfa_ 167 LFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKGDIDFTK 242 (276)
T ss_dssp TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEESSCCTTC
T ss_pred ccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCeeEEEEecCcCCCCceEEEEEeCCCCChhh
Confidence 999999999999999999999998554 345567788999999999887754 22 34567888877654433
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=4.3e-24 Score=224.14 Aligned_cols=188 Identities=21% Similarity=0.275 Sum_probs=143.4
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~~ 591 (771)
..||. |++++++..+ +.+++||+||+|+|++++.+..+.|..+|++|||||.|+++|++||.. .+|+
T Consensus 73 ~~YhE-~l~h~pl~~~--------~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~ 143 (295)
T d1inla_ 73 FMYHE-MLAHVPMFLH--------PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDP 143 (295)
T ss_dssp HHHHH-HHHHHHHHHS--------SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred hhhhh-hhcchhHhhC--------CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCC
Confidence 56887 5666676665 788999999999999999999998888999999999999999999943 2689
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
|++++++||++||++.. .+||+||+|+..+.. .|+..|++.+|
T Consensus 144 rv~v~~~Da~~~l~~~~--------------------------------~~yDvIi~D~~dp~~-----~~~~~L~t~ef 186 (295)
T d1inla_ 144 RAEIVIANGAEYVRKFK--------------------------------NEFDVIIIDSTDPTA-----GQGGHLFTEEF 186 (295)
T ss_dssp TEEEEESCHHHHGGGCS--------------------------------SCEEEEEEEC---------------CCSHHH
T ss_pred CcEEEhhhHHHHHhcCC--------------------------------CCCCEEEEcCCCCCc-----CchhhhccHHH
Confidence 99999999999998754 679999999876532 15678999999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEee--ecC---CccEEEEEecCCCcCCCCCHHHHHHH
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE---DVNLVLFGLSSESCIKDNSFPEAAVQ 744 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~---~~N~Vl~a~~~~~~~~~~~l~~~a~~ 744 (771)
++.++++|+|+|++++|..+. +......++++++++|+++..+. ++. +....++|++...+.... ..++++.
T Consensus 187 y~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~~p~~~~-~~~~~~~ 265 (295)
T d1inla_ 187 YQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGIDPIKDF-DPEKVRK 265 (295)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESSCCTTTTC-CHHHHHT
T ss_pred HHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeeceecCcccEEEEEeCCCCccccc-CHHHHhh
Confidence 999999999999999998764 45566788999999999876553 232 344678888776543332 3455555
Q ss_pred Hhhhhc
Q 004164 745 LGKLVK 750 (771)
Q Consensus 745 l~~~~~ 750 (771)
+...++
T Consensus 266 ~~~~l~ 271 (295)
T d1inla_ 266 FNKELK 271 (295)
T ss_dssp CSSCCS
T ss_pred ccCCCe
Confidence 544444
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=5.9e-24 Score=225.65 Aligned_cols=186 Identities=16% Similarity=0.188 Sum_probs=144.5
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 590 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-----g~~~~ 590 (771)
..||..|+ ++++..+ +.+++||+||+|+|++++.+.++.|..+|++|||||+|+++|++|| +..++
T Consensus 61 ~~Yhe~l~-h~~l~~~--------~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d 131 (312)
T d1uira_ 61 YIYHETLV-HPAMLTH--------PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDD 131 (312)
T ss_dssp HHHHHHHH-HHHHHHS--------SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC
T ss_pred HHHHHHHh-hhhhhhC--------CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCC
Confidence 56887665 4555554 7889999999999999999999888889999999999999999999 33478
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
+|++++++||++||++.. .+||+||+|+..+- +...|+..|++.+
T Consensus 132 ~rv~i~~~Da~~~l~~~~--------------------------------~~yDvIi~D~~dp~---~~~~~~~~L~t~e 176 (312)
T d1uira_ 132 PRAVLVIDDARAYLERTE--------------------------------ERYDVVIIDLTDPV---GEDNPARLLYTVE 176 (312)
T ss_dssp TTEEEEESCHHHHHHHCC--------------------------------CCEEEEEEECCCCB---STTCGGGGGSSHH
T ss_pred CceEEEEchHHHHhhhcC--------------------------------CcccEEEEeCCCcc---cccchhhhhhhHH
Confidence 999999999999998753 67999999985442 2233678899999
Q ss_pred HHHHHHHccCCCcEEEEEeccC---ChhHHHHHHHHHHHhccceEEeee--cC--CccEEEEEecCCC--cCCCCCHHHH
Q 004164 671 FLLTVKDALSEQGLFIVNLVSR---SQATKDMVISRMKMVFNHLFCLQL--EE--DVNLVLFGLSSES--CIKDNSFPEA 741 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv~Nl~~~---~~~~~~~v~~~l~~vF~~v~~~~~--~~--~~N~Vl~a~~~~~--~~~~~~l~~~ 741 (771)
|++.++++|+|||+|++|+.+. .......+.++++++|+++..+.. +. .....++|++... .+....+..+
T Consensus 177 F~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w~f~~aS~~~~p~~~~~~~~~~~ 256 (312)
T d1uira_ 177 FYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEAR 256 (312)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEESSSCTTCCCTTHHHHH
T ss_pred HHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCCEeEEEeCCCCccccChhhhhhh
Confidence 9999999999999999997543 345567778999999999877653 22 2345778887753 3334445555
Q ss_pred HHHH
Q 004164 742 AVQL 745 (771)
Q Consensus 742 a~~l 745 (771)
.++.
T Consensus 257 ~~~~ 260 (312)
T d1uira_ 257 IRER 260 (312)
T ss_dssp HHHT
T ss_pred Hhhc
Confidence 5543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=5.9e-24 Score=223.27 Aligned_cols=169 Identities=21% Similarity=0.327 Sum_probs=137.6
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~~ 591 (771)
..||. |++++++..+ +++++||+||+|+|++++.+.++.|..+|++|||||+|+++|++||.. .+++
T Consensus 64 ~~Yhe-~l~h~~~~~~--------~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~ 134 (290)
T d1xj5a_ 64 CAYQE-MITHLPLCSI--------PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDP 134 (290)
T ss_dssp HHHHH-HHHHHHHTTS--------SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGST
T ss_pred hHHHH-HHhhHHHhhC--------CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCC
Confidence 56875 5555666554 678999999999999999999988877999999999999999999932 3689
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
|++++++||++|+++.. ..+||+||+|++++.. |+..|++.+|
T Consensus 135 r~~i~~~Da~~~l~~~~-------------------------------~~~yDvIi~D~~dp~~------~~~~L~t~eF 177 (290)
T d1xj5a_ 135 RVNLVIGDGVAFLKNAA-------------------------------EGSYDAVIVDSSDPIG------PAKELFEKPF 177 (290)
T ss_dssp TEEEEESCHHHHHHTSC-------------------------------TTCEEEEEECCCCTTS------GGGGGGSHHH
T ss_pred CcEEEEccHHHHHhhcc-------------------------------ccCccEEEEcCCCCCC------cchhhCCHHH
Confidence 99999999999998754 2589999999876531 5789999999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEe---eecCC---ccEEEEEecCC
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCL---QLEED---VNLVLFGLSSE 730 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~---~~~~~---~N~Vl~a~~~~ 730 (771)
++.++++|+|+|++++|+.+. +......++++++++|+++..+ .++.. ....++|++..
T Consensus 178 ~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as~~~ 244 (290)
T d1xj5a_ 178 FQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEG 244 (290)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECSS
T ss_pred HHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEeCCC
Confidence 999999999999999998665 4566678899999999976433 24432 33467777654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=1.1e-23 Score=219.61 Aligned_cols=170 Identities=17% Similarity=0.294 Sum_probs=139.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc----CCCCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F----g~~~~~ 591 (771)
..||. |+.++++..+ +.+++||+||+|+|++++.+.++.+..+|++|||||+|+++|++|| +..+++
T Consensus 59 ~~Yhe-~l~h~~l~~~--------~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~ 129 (274)
T d1iy9a_ 59 FVYHE-MVAHVPLFTH--------PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDP 129 (274)
T ss_dssp HHHHH-HHHHHHHHHS--------SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTST
T ss_pred hhchh-hhccchhhcc--------CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCC
Confidence 45877 5556666654 6789999999999999999999888789999999999999999999 445789
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
|++++++||++||++.. .+||+||+|+..+.. ++..|++.+|
T Consensus 130 r~~i~~~D~~~~l~~~~--------------------------------~~yDvIi~D~~~p~~------~~~~L~t~eF 171 (274)
T d1iy9a_ 130 RVDVQVDDGFMHIAKSE--------------------------------NQYDVIMVDSTEPVG------PAVNLFTKGF 171 (274)
T ss_dssp TEEEEESCSHHHHHTCC--------------------------------SCEEEEEESCSSCCS------CCCCCSTTHH
T ss_pred CeEEEechHHHHHhhcC--------------------------------CCCCEEEEcCCCCCC------cchhhccHHH
Confidence 99999999999998753 679999999876532 4678999999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEeee--cC---CccEEEEEecCCCc
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--EE---DVNLVLFGLSSESC 732 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~~---~~N~Vl~a~~~~~~ 732 (771)
++.++++|+|+|+++.|..+. .......++++|+++|+++..+.. +. +....++|++....
T Consensus 172 y~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~aS~~~~p 239 (274)
T d1iy9a_ 172 YAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKYDP 239 (274)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESSCCT
T ss_pred HHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEEEEEcCCCCc
Confidence 999999999999999998654 455667889999999998766543 32 34567778876433
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.91 E-value=1.5e-23 Score=220.85 Aligned_cols=168 Identities=18% Similarity=0.277 Sum_probs=128.1
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~~ 591 (771)
..||. |++++++..+ +.+++||+||+|+|++++.+.++.|..+|++|||||.|+++|++||.. ..++
T Consensus 90 ~~YhE-~l~h~pl~~~--------~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dp 160 (312)
T d2b2ca1 90 FSYQE-MLAHLPMFAH--------PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 160 (312)
T ss_dssp SHHHH-HHHHHHHHHS--------SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCT
T ss_pred HHHHH-HhhhHHHhcC--------CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCC
Confidence 46886 5556666655 788999999999999999999988877999999999999999999954 2579
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
|++++++||++||++.. .+||+||+|+..+.. |+..|++.+|
T Consensus 161 rv~i~i~Da~~~l~~~~--------------------------------~~yDvII~D~~dp~~------~~~~L~t~eF 202 (312)
T d2b2ca1 161 KLDLFCGDGFEFLKNHK--------------------------------NEFDVIITDSSDPVG------PAESLFGQSY 202 (312)
T ss_dssp TEEEECSCHHHHHHHCT--------------------------------TCEEEEEECCC-------------------H
T ss_pred CeEEEEchHHHHHHhCC--------------------------------CCCCEEEEcCCCCCC------cchhhhhHHH
Confidence 99999999999998743 689999998865531 5788999999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEeee--cC---CccEEEEEecCC
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--EE---DVNLVLFGLSSE 730 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~~---~~N~Vl~a~~~~ 730 (771)
++.++++|+|+|++++|..+. .......++++++++|+++..+.. +. +....++|++..
T Consensus 203 y~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~ 268 (312)
T d2b2ca1 203 YELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNA 268 (312)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred HHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceeeEEECCC
Confidence 999999999999999997554 345667789999999998765543 33 233478888764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.2e-18 Score=172.80 Aligned_cols=143 Identities=17% Similarity=0.290 Sum_probs=119.8
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~ 106 (771)
+.++|+++|+.. ...+.+....+.+.+.+.+++.. .++.+|||+|||+|..+..|++.|+ +|||||+|+.+|+.
T Consensus 9 ~~e~W~~~~~~~--~~~w~~~~~~~~l~~~~~~~l~~---~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~ 82 (229)
T d2bzga1 9 TLEEWQDKWVNG--KTAFHQEQGHQLLKKHLDTFLKG---KSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQE 82 (229)
T ss_dssp CHHHHHHHHHHT--CCTTCCTTCCHHHHHHHHHHHTT---CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred CHHHHHHHHccC--CCCCccCCCCHHHHHHHHHhcCC---CCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHH
Confidence 468999999876 33444555667777777777764 5788999999999999999999999 99999999999998
Q ss_pred HHHHhhc------------------CCCCcEEEEeecCCCC-CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHc
Q 004164 107 MLRRNVR------------------DRSDMRWRVMDMTSMQ-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRL 167 (771)
Q Consensus 107 ~~~~~~~------------------~~~~i~~~~~D~~~l~-~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rv 167 (771)
+++++.. ...++++.++|+.+++ ...+.||+|++.++++++.... +..+++++.++
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~-----r~~~~~~~~~~ 157 (229)
T d2bzga1 83 FFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD-----RKCYADTMFSL 157 (229)
T ss_dssp HHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGG-----HHHHHHHHHHT
T ss_pred HHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchh-----hHHHHHHHHhh
Confidence 8877642 2257899999999884 5678999999999999987655 78999999999
Q ss_pred cccCeEEEEEEcC
Q 004164 168 LKSGGKFVCLTLA 180 (771)
Q Consensus 168 LkpGG~~ii~~~~ 180 (771)
|||||++++.++.
T Consensus 158 LkpgG~~~l~~~~ 170 (229)
T d2bzga1 158 LGKKFQYLLCVLS 170 (229)
T ss_dssp EEEEEEEEEEEEE
T ss_pred cCCcceEEEEEcc
Confidence 9999999888765
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.75 E-value=3.1e-18 Score=171.87 Aligned_cols=120 Identities=28% Similarity=0.366 Sum_probs=104.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (771)
...+.+.+.+++. ++.+|||||||+|.++..|++.+. +|+|+|+|+.|++.+++++...+..+.++++|+.+++
T Consensus 24 ~~~~~~~~~~~l~-----~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~ 97 (226)
T d1ve3a1 24 IETLEPLLMKYMK-----KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS 97 (226)
T ss_dssp HHHHHHHHHHSCC-----SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC
T ss_pred HHHHHHHHHHhcC-----CCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccccccccccccccccc
Confidence 4444555666663 678999999999999999999887 8999999999999999888777788999999999999
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++++||+|++..+++|+.+.+ ..++|+++.++|||||++++....
T Consensus 98 ~~~~~fD~I~~~~~l~~~~~~d-----~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 98 FEDKTFDYVIFIDSIVHFEPLE-----LNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp SCTTCEEEEEEESCGGGCCHHH-----HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccCcCceEEEEecchhhCChhH-----HHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9999999999999999986444 678999999999999999887654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.74 E-value=4.4e-18 Score=172.92 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=103.1
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~ 132 (771)
...+.+.++. +|+.+|||||||+|.++..|++.+. +|+|+|+|+.|++.|++++...+ +++.++++|+.++++++
T Consensus 5 ~~~l~~~~~~---~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 5 LGLMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80 (234)
T ss_dssp HHHHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred HHHHHHHhCC---CCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccccccccc
Confidence 3446666665 7999999999999999999999875 99999999999999988775544 67999999999999999
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++||+|++.++++++.++. .+++++.++|||||++++.++..
T Consensus 81 ~~fD~v~~~~~l~~~~d~~-------~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 81 DSFDIITCRYAAHHFSDVR-------KAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp TCEEEEEEESCGGGCSCHH-------HHHHHHHHHEEEEEEEEEEEECB
T ss_pred cccceeeeeceeecccCHH-------HHHHHHHHeeCCCcEEEEEEcCC
Confidence 9999999999999987654 99999999999999999987653
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.73 E-value=8.7e-18 Score=169.66 Aligned_cols=114 Identities=16% Similarity=0.263 Sum_probs=99.4
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCc
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sF 135 (771)
+.+.+.. +++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++....+ ++++|+++|++++|+++++|
T Consensus 7 ll~~~~l---~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 7 LMQIAAL---KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHTC---CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHhcCC---CCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 4444543 6889999999999999999999886 99999999999999987765443 78999999999999999999
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
|+|++..+++|+.+++ .+++++.++|||||++++.++..
T Consensus 83 D~v~~~~~l~~~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 83 HIVTCRIAAHHFPNPA-------SFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp EEEEEESCGGGCSCHH-------HHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccccccccccCCHH-------HHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999999999997754 89999999999999999987653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=4.1e-17 Score=166.74 Aligned_cols=137 Identities=17% Similarity=0.242 Sum_probs=105.4
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHH
Q 004164 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (771)
Q Consensus 28 ~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~ 107 (771)
.++|+..|.... ..+......+..++......+..+|||||||+|.++..|++.|. +|+|||+|+.||+.|
T Consensus 9 a~~Yd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a 79 (251)
T d1wzna1 9 AEYYDTIYRRRI--------ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVA 79 (251)
T ss_dssp GGGHHHHTHHHH--------HTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHHHhhh--------hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccc
Confidence 567888776541 11222222333333322225678999999999999999999988 999999999999999
Q ss_pred HHHhhcCCCCcEEEEeecCCCCCCCCCccEEEec-cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 108 LRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 108 ~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~-~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+++....+.++++.++|+++++++ ++||+|++. ++++++...+ ..++|++++++|||||++++...
T Consensus 80 ~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~-----~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 80 RRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEED-----LRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp HHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccchheehhhhhcccc-cccchHhhhhhhhhcCChHH-----HHHHHHHHHHHcCCCcEEEEEec
Confidence 988877778899999999999987 589999986 4666653222 67999999999999999988653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.4e-17 Score=166.22 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=96.8
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
..++.+|||||||+|.++..|+..++.+|+++|+|+.||+.|++++...+ ++++|+++|++++++++++||+|++.+++
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 35678999999999999999887766699999999999999988875543 56899999999999989999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+++++ +.+++++++++|||||.+++.+..
T Consensus 138 ~h~~~~~-----~~~~l~~i~~~Lk~~G~~~i~~~~ 168 (222)
T d2ex4a1 138 GHLTDQH-----LAEFLRRCKGSLRPNGIIVIKDNM 168 (222)
T ss_dssp GGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccchhhh-----hhhHHHHHHHhcCCcceEEEEEcc
Confidence 9987654 668999999999999999998643
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.67 E-value=1.1e-16 Score=167.27 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=95.9
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecc
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~ 142 (771)
.+++.+|||||||+|.++..|++. |. +|+|+|+|+.+++.++++....+ .+++++++|+.++|+++++||+|++..
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 143 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 143 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence 468899999999999999999987 55 89999999999998887765543 579999999999999999999999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++|+.+. ..++++++++|||||+|++.++.
T Consensus 144 ~l~h~~d~-------~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 144 AFLHSPDK-------LKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp CGGGCSCH-------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhhccCH-------HHHHHHHHHhcCCCcEEEEEEee
Confidence 99999764 48999999999999999998764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=1.3e-16 Score=161.98 Aligned_cols=100 Identities=22% Similarity=0.314 Sum_probs=87.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEec-ccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDK-GGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~-~~l~~ 146 (771)
++.+|||+|||+|.++..|++.|. +|+|+|+|+.|++.++++.. ..++.+|++++++++++||+|++. .+++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDLPFPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----SCEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc-----cccccccccccccccccccceeeecchhhh
Confidence 578999999999999999999987 89999999999998876542 246789999999999999999985 57888
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.+++ ++|+++.++|||||++++....
T Consensus 116 ~~d~~-------~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 116 VENKD-------KAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp CSCHH-------HHHHHHHHHEEEEEEEEEEEEB
T ss_pred hhhHH-------HHHHHHHhhcCcCcEEEEEECC
Confidence 87654 8999999999999999998754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.65 E-value=3.1e-16 Score=153.34 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC-------------CCCcEEEEeecCCCC-CCC
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-------------RSDMRWRVMDMTSMQ-FMD 132 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~-------------~~~i~~~~~D~~~l~-~~~ 132 (771)
+|+.+|||+|||+|..+..|++.|+ +|+|+|+|+.||+.+++++... ...+.+.++|+.+++ ...
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 97 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 97 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence 6889999999999999999999999 9999999999999998876432 346789999999885 445
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
.+||+|++.++++++.... ...+++++.++|||||++++..+..
T Consensus 98 ~~~D~i~~~~~l~~l~~~~-----~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 98 GHCAAFYDRAAMIALPADM-----RERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp HSEEEEEEESCGGGSCHHH-----HHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred cceeEEEEEeeeEecchhh-----hHHHHHHHHHhcCCCcEEEEEEccc
Confidence 7899999999999987544 6799999999999999998877653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.64 E-value=3.7e-16 Score=154.46 Aligned_cols=133 Identities=18% Similarity=0.322 Sum_probs=106.1
Q ss_pred CCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHH
Q 004164 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (771)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i 104 (771)
+.++.||.+.|.... .... +...+.. ..+.+|||||||+|..+..|++.|+ +|+|+|+|+.++
T Consensus 3 ~~d~~~~~~~~~~~~---------~~~~----~~~~~~~---~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l 65 (198)
T d2i6ga1 3 VRDENYFTEKYGLTR---------THSD----VLAAAKV---VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASM 65 (198)
T ss_dssp CCSHHHHHHHHCBCC---------CCHH----HHHHHTT---SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH
T ss_pred cchHHHHhcccCCCC---------CHHH----HHHHccc---CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHH
Confidence 456788888775441 0111 2222222 2346999999999999999999998 999999999999
Q ss_pred HHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 105 SDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 105 ~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.++++....+ +++.+...|+.++++ +++||+|++..++++++..+ +.++++++.++|+|||++++.+..
T Consensus 66 ~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~-----~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 66 ANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQT-----IPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp HHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTH-----HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred HHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecCCHHH-----HHHHHHHHHHHcCCCcEEEEEEec
Confidence 98877765544 568999999999876 58899999999999987655 779999999999999999998764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.63 E-value=9.7e-16 Score=156.42 Aligned_cols=124 Identities=19% Similarity=0.244 Sum_probs=100.6
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (771)
|......+.+.+... ..++.+|||+|||+|.++..|++.|. +|+|+|+|+.||+.|+++....+.+++++++|+.+++
T Consensus 20 y~~~~~~~~~~~~~~-~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~ 97 (246)
T d1y8ca_ 20 YKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN 97 (246)
T ss_dssp HHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC
T ss_pred HHHHHHHHHHHHHHh-CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhc
Confidence 344444555555431 13457999999999999999999988 9999999999999998888777788999999999988
Q ss_pred CCCCCccEEEec-cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 130 FMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 130 ~~~~sFDlVi~~-~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++ ++||+|++. ++++++.+.+ .+.++|++++++|+|||.|++....
T Consensus 98 ~~-~~fD~i~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 98 IN-RKFDLITCCLDSTNYIIDSD----DLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp CS-CCEEEEEECTTGGGGCCSHH----HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cc-ccccccceeeeeeeccCCHH----HHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 64 689999975 6778876654 2778999999999999999875443
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.63 E-value=5.1e-16 Score=159.83 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=96.0
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
..+..+|||+|||+|.++..|+..++.+|+++|+|+.|++.|++++. ..++++|.++|+.++++++++||+|++..+++
T Consensus 91 ~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA-GMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT-TSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc-ccccceeEEccccccccCCCccceEEeecccc
Confidence 35778999999999999999887766689999999999999877763 44678999999999999999999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+.+++ +.++|++++++|+|||++++.+..
T Consensus 170 hl~d~d-----~~~~l~~~~~~LkpgG~iii~e~~ 199 (254)
T d1xtpa_ 170 YLTDAD-----FVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ccchhh-----hHHHHHHHHHhcCCCcEEEEEecC
Confidence 997655 678999999999999999987653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.62 E-value=8.8e-16 Score=157.61 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=99.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC-CCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF-MDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~-~~~sFDlVi~~~~ 143 (771)
+++.+|||+|||+|..+..+++.+.++|+|+|+|+.||+.|++++.... .++.|.++|+...++ .+++||+|++.++
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 3689999999999999999999888899999999999999988875443 468999999987765 4678999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhc
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~ 186 (771)
++++..++. .+..+++++.++|||||+|++.....+.+..
T Consensus 103 l~~~~~~~~---~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~ 142 (252)
T d1ri5a_ 103 FHYAFSTSE---SLDIAQRNIARHLRPGGYFIMTVPSRDVILE 142 (252)
T ss_dssp GGGGGSSHH---HHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred eeecCCCHH---HHHHHHHHHhceeCCCCEEEEEecCHHHHHH
Confidence 999865542 3779999999999999999998876555433
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.8e-15 Score=154.53 Aligned_cols=117 Identities=17% Similarity=0.074 Sum_probs=99.2
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (771)
....+...+.. .|+.+|||||||+|.++..|++....+|+|+|+|+.+++.++++....+ ++++|+++|+.++ +
T Consensus 21 ~~~~l~~~~~l---~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~ 96 (245)
T d1nkva_ 21 KYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-V 96 (245)
T ss_dssp HHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-C
T ss_pred HHHHHHHHcCC---CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-c
Confidence 33446666654 7899999999999999999988632499999999999999888766554 4699999999998 4
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++++||+|++.++++++.+.. .++++++++|||||++++.+..
T Consensus 97 ~~~~fD~v~~~~~~~~~~d~~-------~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 97 ANEKCDVAACVGATWIAGGFA-------GAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp CSSCEEEEEEESCGGGTSSSH-------HHHHHHTTSEEEEEEEEEEEEE
T ss_pred ccCceeEEEEEehhhccCCHH-------HHHHHHHHHcCcCcEEEEEecc
Confidence 678999999999999998755 9999999999999999998754
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.4e-15 Score=157.62 Aligned_cols=118 Identities=23% Similarity=0.347 Sum_probs=93.8
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC
Q 004164 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (771)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~ 127 (771)
.+..+...+...+....+.++.+|||+|||+|.++..|++.+. .+++|+|+|+.+++.++++ .+++.|.++|+.+
T Consensus 65 ~~~~l~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~----~~~~~~~~~d~~~ 140 (268)
T d1p91a_ 65 HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR----YPQVTFCVASSHR 140 (268)
T ss_dssp TTHHHHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH----CTTSEEEECCTTS
T ss_pred chHHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc----cccccceeeehhh
Confidence 3444444444444221224678999999999999999998843 5899999999999877655 3689999999999
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
+|+++++||+|++..++++ +++++|+|||||++++.+....++
T Consensus 141 l~~~~~sfD~v~~~~~~~~--------------~~e~~rvLkpgG~l~~~~p~~~~l 183 (268)
T d1p91a_ 141 LPFSDTSMDAIIRIYAPCK--------------AEELARVVKPGGWVITATPGPRHL 183 (268)
T ss_dssp CSBCTTCEEEEEEESCCCC--------------HHHHHHHEEEEEEEEEEEECTTTT
T ss_pred ccCCCCCEEEEeecCCHHH--------------HHHHHHHhCCCcEEEEEeeCCcch
Confidence 9999999999998766554 578999999999999999876654
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.3e-15 Score=155.90 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=105.5
Q ss_pred CCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHH
Q 004164 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (771)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~ 103 (771)
.|...+||+.+|.... ..+........+...+.+.+.. ...++.+|||||||+|.++..++..+..+|+|+|+|+.+
T Consensus 10 ~f~~~~Y~~~~Y~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~ 86 (257)
T d2a14a1 10 HFLPRDYLATYYSFDG--SPSPEAEMLKFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRN 86 (257)
T ss_dssp HCCHHHHHHHHCCCCC--SCCHHHHHHHHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHH
T ss_pred hcChHHHHHHHhCcCc--cccHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHH
Confidence 4677899999987552 2221111122233344444432 224678999999999999988887777689999999999
Q ss_pred HHHHHHHhhcCCCCcE-------------------------------EEEe----ecCCCCCCCCCccEEEecccccccc
Q 004164 104 ISDMLRRNVRDRSDMR-------------------------------WRVM----DMTSMQFMDETFDVILDKGGLDALM 148 (771)
Q Consensus 104 i~~~~~~~~~~~~~i~-------------------------------~~~~----D~~~l~~~~~sFDlVi~~~~l~~l~ 148 (771)
|+.++++......... .... +....++++++||+|++..+++++.
T Consensus 87 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 166 (257)
T d2a14a1 87 REELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC 166 (257)
T ss_dssp HHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC
T ss_pred HHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhc
Confidence 9999877654332211 1111 1122357788999999999999986
Q ss_pred CcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 149 ~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
.... ....+++++.++|||||++++.++..
T Consensus 167 ~~~~---~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 167 CSLD---AYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp SSHH---HHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred ccHH---HHHHHHHHHHhccCCCcEEEEEEecc
Confidence 5332 26789999999999999999988653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=2.1e-15 Score=158.22 Aligned_cols=155 Identities=15% Similarity=0.221 Sum_probs=109.1
Q ss_pred hhhhhhccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEE
Q 004164 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGIT 95 (771)
Q Consensus 16 ~~lP~~~~~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~ 95 (771)
+.+|..+.+-....+|+.++... ... .......+..++.. .++.+|||+|||+|.++..|++.|+ +|+
T Consensus 15 ~~~~d~Y~d~~~~~~~~~~~~~~--~~r------~~~~~~~l~~~l~~---~~~~~vLD~GcG~G~~~~~la~~g~-~v~ 82 (292)
T d1xvaa_ 15 EGIPDQYADGEAARVWQLYIGDT--RSR------TAEYKAWLLGLLRQ---HGCHRVLDVACGTGVDSIMLVEEGF-SVT 82 (292)
T ss_dssp TTSCCTTTTSHHHHHHHHHHHTT--CCB------CHHHHHHHHHHHHH---TTCCEEEESSCTTSHHHHHHHHTTC-EEE
T ss_pred cccchhhhcchHHHHHHHHhcch--hhh------HHHHHHHHHHHhhh---cCCCEEEEecCCCcHHHHHHHHcCC-eee
Confidence 44565554433466888876543 111 22233445566654 4567999999999999999999998 899
Q ss_pred EEcCCHHHHHHHHHHhhcCCC-----CcEEEEeecCCCC---CCCCCccEEEec-cccccccCcccchHHHHHHHHHHHH
Q 004164 96 NVDFSKVVISDMLRRNVRDRS-----DMRWRVMDMTSMQ---FMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKR 166 (771)
Q Consensus 96 ~vDiS~~~i~~~~~~~~~~~~-----~i~~~~~D~~~l~---~~~~sFDlVi~~-~~l~~l~~~~~~~~~~~~~l~~i~r 166 (771)
|+|+|+.||+.|+++...... ...+..+|+..++ ...++||+|++. .++.|+.+..........+|+++++
T Consensus 83 gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (292)
T d1xvaa_ 83 SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 162 (292)
T ss_dssp EEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHH
T ss_pred eccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHH
Confidence 999999999999877654443 2345555554331 234789999975 4788887655434457899999999
Q ss_pred ccccCeEEEEEEcCcc
Q 004164 167 LLKSGGKFVCLTLAES 182 (771)
Q Consensus 167 vLkpGG~~ii~~~~~~ 182 (771)
+|||||+|++.....+
T Consensus 163 ~LkpgG~li~~~~~~~ 178 (292)
T d1xvaa_ 163 MVRPGGLLVIDHRNYD 178 (292)
T ss_dssp TEEEEEEEEEEEECHH
T ss_pred HcCcCcEEEEeecCHH
Confidence 9999999998765433
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.56 E-value=1.1e-14 Score=146.47 Aligned_cols=107 Identities=12% Similarity=0.089 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc---CCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~---g~~~V~~vDiS~~~i~~~~~~~~~~~~--~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
+++.+|||+|||+|..+..|++. +..+|+|+|+|+.|++.|+++...... ++.+..+|+.+++ .+.+|+|++.
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~ 115 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILN 115 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEEe
Confidence 47889999999999999999874 334999999999999999887765443 4566667766554 5679999999
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.+++++...+ ..++|++++++|||||.|++.+..
T Consensus 116 ~~l~~~~~~d-----~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 116 FTLQFLPPED-----RIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp SCGGGSCGGG-----HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeccccChhh-----HHHHHHHHHHhCCCCceeeccccc
Confidence 9999986544 679999999999999999998765
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=3.8e-15 Score=147.78 Aligned_cols=98 Identities=21% Similarity=0.237 Sum_probs=86.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
+..+|||||||+|.++..+. +++|+|+|+.+++.++++ ++.++++|+.++++++++||+|++..+|+|+
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~ 104 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFV 104 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc------ccccccccccccccccccccccccccccccc
Confidence 56799999999999988773 468999999999877653 5899999999999999999999999999999
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.++ .+++++++++|+|||++++.++....
T Consensus 105 ~d~-------~~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 105 DDP-------ERALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp SCH-------HHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred ccc-------ccchhhhhhcCCCCceEEEEecCCcc
Confidence 764 48999999999999999999876544
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.51 E-value=3.3e-14 Score=148.17 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..|++. + ..+|+|+|+|+.+++.++++......+++|.++|+.+++++ ++||+|++.+++
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l 104 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL 104 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEehhh
Confidence 45689999999999999999875 2 24899999999999999888776667899999999999876 579999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+|+.++. .++++++++|||||.+++.+.
T Consensus 105 ~~~~d~~-------~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 105 LHMTTPE-------TMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp GGCSSHH-------HHHHHHHHTEEEEEEEEEEEC
T ss_pred hcCCCHH-------HHHHHHHHHcCcCcEEEEEEC
Confidence 9998755 899999999999999999884
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.50 E-value=2.5e-14 Score=144.08 Aligned_cols=101 Identities=20% Similarity=0.267 Sum_probs=88.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||||||+|.++..|++.|. +|+|+|+|+.+++.++++. ..++.++++|+.++++ +++||+|++.++++|+
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~---~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~ 94 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRL---KDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHI 94 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHS---CSCEEEEESCGGGCCC-SSCEEEEEEESCGGGC
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccc---cccccccccccccccc-ccccccccccceeEec
Confidence 467899999999999999998887 8999999999999887664 3479999999999876 5899999999999999
Q ss_pred cCcccchHHHHHHHHHHH-HccccCeEEEEEEcC
Q 004164 148 MEPELGHKLGNQYLSEVK-RLLKSGGKFVCLTLA 180 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~-rvLkpGG~~ii~~~~ 180 (771)
.++. .++.+++ ++|+|||.+++....
T Consensus 95 ~d~~-------~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 95 DDPV-------ALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp SSHH-------HHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCHH-------HHHHHHHHHhcCCCceEEEEeCC
Confidence 7754 8899998 899999999998754
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.49 E-value=6.3e-14 Score=137.01 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=101.4
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecC
Q 004164 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (771)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~ 126 (771)
...+++..+...+.. .++++|||+|||+|.++..++..+. +|+++|+++.+++.++++....+ ++++++++|+.
T Consensus 17 t~~eir~~il~~l~~---~~g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~ 92 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEP---GKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92 (186)
T ss_dssp CCHHHHHHHHHHHCC---CTTCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred ChHHHHHHHHHhcCC---CCCCEEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh
Confidence 455777778888765 7899999999999999999988754 99999999999999988776655 58999999999
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+..++...||+|++.+..++ ...+++.+.+.|||||++++.....+
T Consensus 93 ~~~~~~~~~D~v~~~~~~~~----------~~~~~~~~~~~LkpgG~lvi~~~~~e 138 (186)
T d1l3ia_ 93 EALCKIPDIDIAVVGGSGGE----------LQEILRIIKDKLKPGGRIIVTAILLE 138 (186)
T ss_dssp HHHTTSCCEEEEEESCCTTC----------HHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred hcccccCCcCEEEEeCcccc----------chHHHHHHHHHhCcCCEEEEEeeccc
Confidence 88778889999998776544 34889999999999999998776533
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=7.4e-14 Score=144.09 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=110.2
Q ss_pred hhhhccCCCCHhhHHHHHhhcCCCCccccccch-hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEE
Q 004164 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEW-PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITN 96 (771)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~~~~~~ew~~~~-~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~ 96 (771)
+-..+..|...+||+.+|.... ..+.....+ +.....+.+.+.. ....+.+|||+|||+|.++...+...+.+|++
T Consensus 6 ~~~~~~~f~~~~Y~~~~y~~~~--~~~~~~~~~~~~~~~~~~~~f~~-g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~ 82 (263)
T d2g72a1 6 VASAYQRFEPRAYLRNNYAPPR--GDLCNPNGVGPWKLRCLAQTFAT-GEVSGRTLIDIGSGPTVYQLLSACSHFEDITM 82 (263)
T ss_dssp HHHHGGGCCHHHHHHHHHSTTT--TCCSSTTSHHHHHHHHHHHHHHT-SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEE
T ss_pred HHHHHhhcCHHHHHHHHhCcCc--ccchhhhhhhhhHHHHHHHHcCC-CCCCCcEEEEeccCCCHHHHHHhcccCCeEEE
Confidence 5667788999999999997552 223222222 2223445555532 22467899999999998887666665669999
Q ss_pred EcCCHHHHHHHHHHhhcCCCCc-------------------------------EEEEeecCCC------CCCCCCccEEE
Q 004164 97 VDFSKVVISDMLRRNVRDRSDM-------------------------------RWRVMDMTSM------QFMDETFDVIL 139 (771)
Q Consensus 97 vDiS~~~i~~~~~~~~~~~~~i-------------------------------~~~~~D~~~l------~~~~~sFDlVi 139 (771)
+|+|+.|++.+++......... .....|+... ++..++||+|+
T Consensus 83 ~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~ 162 (263)
T d2g72a1 83 TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALV 162 (263)
T ss_dssp ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEE
T ss_pred EeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeee
Confidence 9999999998877654332111 2334455432 34567899999
Q ss_pred eccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+..+++++.... ....++++++.++|||||+|++....
T Consensus 163 ~~~~l~~i~~~~---~~~~~~l~~~~~~LkPGG~li~~~~~ 200 (263)
T d2g72a1 163 SAFCLEAVSPDL---ASFQRALDHITTLLRPGGHLLLIGAL 200 (263)
T ss_dssp EESCHHHHCSSH---HHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred eHHHHHHHccCH---HHHHHHHHHHHHHcCCCCEEEEeccc
Confidence 999999986432 12779999999999999999998754
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=3.1e-13 Score=140.52 Aligned_cols=116 Identities=9% Similarity=0.118 Sum_probs=96.8
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~ 132 (771)
.+..++.....+|+.+|||||||.|.++..+++. |. +|+|+|+|+.+++.++++..+.+ ..+.+...|..++ +
T Consensus 40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~ 115 (280)
T d2fk8a1 40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---A 115 (280)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---C
T ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---c
Confidence 4555666666689999999999999999999887 66 99999999999999988876665 3566777776654 3
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++||.|++.++++|+.... ...+|++++++|||||++++.+..
T Consensus 116 ~~fD~i~si~~~eh~~~~~-----~~~~f~~i~~~LkpgG~~~i~~i~ 158 (280)
T d2fk8a1 116 EPVDRIVSIEAFEHFGHEN-----YDDFFKRCFNIMPADGRMTVQSSV 158 (280)
T ss_dssp CCCSEEEEESCGGGTCGGG-----HHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cchhhhhHhhHHHHhhhhh-----HHHHHHHHHhccCCCceEEEEEee
Confidence 7899999999999987654 679999999999999999987643
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=5.5e-13 Score=138.77 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=98.7
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~ 132 (771)
.+..++.+....|+.+|||||||.|.++..+++. |. +|+|+++|+..++.++++....+ .++++..+|..+++
T Consensus 50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 125 (285)
T d1kpga_ 50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 125 (285)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---
Confidence 3445555566689999999999999999998887 66 99999999999999988765554 57899999987764
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++||.|++-+++.|+.... ...+++++.++|||||++++.+.+
T Consensus 126 ~~fD~i~si~~~eh~~~~~-----~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 126 EPVDRIVSIGAFEHFGHER-----YDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp CCCSEEEEESCGGGTCTTT-----HHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ccccceeeehhhhhcCchh-----HHHHHHHHHhhcCCCCcEEEEEEe
Confidence 6899999999999987654 669999999999999999987765
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=6.3e-13 Score=138.75 Aligned_cols=120 Identities=14% Similarity=0.180 Sum_probs=96.5
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~ 133 (771)
+..++.+...+++.+|||||||.|.++..+++. |. +|+|+++|+..++.+++++...+ ..+.+...|. ++.++
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~~~~~ 125 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEFDE 125 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGCCC
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---ccccc
Confidence 444445555689999999999999999999876 76 99999999999998888876654 3566766665 45578
Q ss_pred CccEEEeccccccccCccc--chHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 134 TFDVILDKGGLDALMEPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~--~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+||.|++.+++.|+.+... +....+.+++++.++|||||++++.+++
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 9999999999999976421 1123779999999999999999997765
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.40 E-value=5.7e-13 Score=134.50 Aligned_cols=128 Identities=14% Similarity=0.172 Sum_probs=104.4
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~ 123 (771)
.|...+..+...+..-+...+.+|+.+|||+|||+|..+..+++.+ .+.|+|+|+|+.|++.+++++ ...+++..+..
T Consensus 51 ~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a-~~~~ni~~i~~ 129 (230)
T d1g8sa_ 51 IWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDAC-AERENIIPILG 129 (230)
T ss_dssp ECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHT-TTCTTEEEEEC
T ss_pred eECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH-hhhcccceEEE
Confidence 3888888888888887777677899999999999999999999984 468999999999999887765 45578888888
Q ss_pred ecCCC-CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 124 DMTSM-QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 124 D~~~l-~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|.... ++.+..+|+++....+++... ...++.+++++|||||++++....
T Consensus 130 d~~~~~~~~~~~~~v~~i~~~~~~~~~-------~~~~l~~~~r~LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 130 DANKPQEYANIVEKVDVIYEDVAQPNQ-------AEILIKNAKWFLKKGGYGMIAIKA 180 (230)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCCSTTH-------HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eeccCcccccccceeEEeeccccchHH-------HHHHHHHHHHhcccCceEEEEeec
Confidence 88775 356677888777666665432 568899999999999999987644
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.40 E-value=6.1e-13 Score=130.69 Aligned_cols=116 Identities=20% Similarity=0.215 Sum_probs=94.0
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCCCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQF 130 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~~D~~~l~~ 130 (771)
.+.|.+.+.. .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++...+ .++++..+|+.+ ++
T Consensus 41 t~lLi~~l~~---~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~ 115 (194)
T d1dusa_ 41 TKILVENVVV---DKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NV 115 (194)
T ss_dssp HHHHHHHCCC---CTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TC
T ss_pred HHHHHHhCCc---CCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hh
Confidence 3456666654 6789999999999999999988765 99999999999998877654332 468999999987 56
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++++||+|++...+++.. ...+.+++++.++|+|||+++++...
T Consensus 116 ~~~~fD~Ii~~~p~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 116 KDRKYNKIITNPPIRAGK------EVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TTSCEEEEEECCCSTTCH------HHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccCCceEEEEcccEEecc------hhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 788999999988876532 12568999999999999999876644
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2e-13 Score=137.87 Aligned_cols=113 Identities=18% Similarity=0.097 Sum_probs=89.3
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMD 132 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~ 132 (771)
+.+...+. .++.+|||||||+|..+..+++.+..+|++||+|+.+++.+++++.....++.++..|+... ++++
T Consensus 44 ~~la~~~~----~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (229)
T d1zx0a1 44 HALAAAAS----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD 119 (229)
T ss_dssp HHHHHHHT----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT
T ss_pred HHHHHhhc----cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 34555554 36889999999999999999988656899999999999999888877777788888877654 5778
Q ss_pred CCccEEEe-----ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 133 ETFDVILD-----KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 133 ~sFDlVi~-----~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++||.|+. ...+.++.+ ...++++++|+|||||+|++.+
T Consensus 120 ~~fD~i~fD~~~~~~~~~~~~~-------~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 120 GHFDGILYDTYPLSEETWHTHQ-------FNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp TCEEEEEECCCCCBGGGTTTHH-------HHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccceeecccccccccccccC-------HHHHHHHHHHHcCCCcEEEEEe
Confidence 99999983 333333332 4589999999999999998743
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.39 E-value=5.3e-13 Score=136.54 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++...+.+..+.++|+.+ .+++++||+|+++...+.
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~~ 196 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL 196 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH
T ss_pred CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhcccccc
Confidence 4789999999999999999998886 89999999999999988777677788999999876 356789999998754443
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
...++.++.++|||||+++++.+.
T Consensus 197 ----------l~~l~~~~~~~LkpGG~lilSgil 220 (254)
T d2nxca1 197 ----------HAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp ----------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ----------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 458899999999999999997754
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.35 E-value=1.1e-12 Score=130.45 Aligned_cols=127 Identities=15% Similarity=0.101 Sum_probs=93.3
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~ 123 (771)
.|...+..+...+..- .....+|+.+|||+|||+|..+..|++. +.++|+|+|+|+.|++.+++++.. ..++.++..
T Consensus 34 ~w~p~rsklaa~i~~g-~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-~~ni~~i~~ 111 (209)
T d1nt2a_ 34 EWVPWRSKLAAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLF 111 (209)
T ss_dssp ECCGGGCHHHHHHHTS-CCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECS
T ss_pred eeCCcchHHHHHHhcc-ccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-cCCceEEEe
Confidence 3665555665555443 2245579999999999999999999986 556899999999999999877644 468999999
Q ss_pred ecCCCCCCCCCccEEEe-ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 124 DMTSMQFMDETFDVILD-KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~-~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+...+.....+|.+.. ...+.+.. ....++.+++++|||||++++....
T Consensus 112 d~~~~~~~~~~~~~vd~v~~~~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 112 DASKPWKYSGIVEKVDLIYQDIAQKN-------QIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp CTTCGGGTTTTCCCEEEEEECCCSTT-------HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred eccCccccccccceEEEEEecccChh-------hHHHHHHHHHHHhccCCeEEEEEEc
Confidence 99887554444444332 11222221 1568899999999999999988754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.1e-12 Score=133.84 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=85.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc------CC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcE--EEEeecCC------CC
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA------GF-HGITNVDFSKVVISDMLRRNVRDR--SDMR--WRVMDMTS------MQ 129 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~------g~-~~V~~vDiS~~~i~~~~~~~~~~~--~~i~--~~~~D~~~------l~ 129 (771)
++..+|||||||+|.++..++.. +. .+++++|+|+.|++.++++..... .++. +...++.. .+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 44568999999999998887653 22 368999999999999988764322 3333 33333322 24
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhc
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~ 186 (771)
+++++||+|++..+++|+.++. .++++++++|+|||.++++.........
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d~~-------~~l~~l~~~LkpgG~l~i~~~~~~~~~~ 168 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKDIP-------ATLKFFHSLLGTNAKMLIIVVSGSSGWD 168 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSCHH-------HHHHHHHHTEEEEEEEEEEEECTTSHHH
T ss_pred CCCCceeEEEEccceecCCCHH-------HHHHHHHhhCCCCCEEEEEEecCcchHH
Confidence 6689999999999999997654 8999999999999999998876554433
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=3.3e-12 Score=127.40 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=91.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (771)
+.+...+.+.+.. +++++|||||||+|.++..|++. + .+.|+++|+++.+++.++++..... .++.++++|..+
T Consensus 61 P~~~a~~l~~l~l---~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~ 137 (213)
T d1dl5a1 61 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY 137 (213)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred chhhHHHHHhhhc---cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH
Confidence 4445556666654 78999999999999999999876 3 3589999999999999988776544 678999999988
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..+.+++||+|++.+++++++ .++.+.|||||++++..
T Consensus 138 ~~~~~~~fD~I~~~~~~~~~p-------------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 138 GVPEFSPYDVIFVTVGVDEVP-------------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CCGGGCCEEEEEECSBBSCCC-------------HHHHHHEEEEEEEEEEB
T ss_pred ccccccchhhhhhhccHHHhH-------------HHHHHhcCCCcEEEEEE
Confidence 777788999999999888763 34678899999998753
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.32 E-value=3.9e-12 Score=125.86 Aligned_cols=142 Identities=11% Similarity=0.170 Sum_probs=103.6
Q ss_pred hhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHH
Q 004164 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDM 107 (771)
Q Consensus 29 ~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~ 107 (771)
++|.+.+... ..++.+|.+.|..+ +.. ++..|||||||+|..+..|++. +..+++|+|+++.++..+
T Consensus 2 ~~~~~~~~~~-~~~p~~~~~~w~~~-------F~~----~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a 69 (204)
T d2fcaa1 2 DFLAENADIA-ISNPADYKGKWNTV-------FGN----DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTA 69 (204)
T ss_dssp HHHHHTTTTB-CSCGGGGTTCHHHH-------HTS----CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred cchhhCccch-hcCHHHHHhHHHHH-------cCC----CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHH
Confidence 3555544443 34555666665432 332 4568999999999999999987 346899999999999999
Q ss_pred HHHhhcCC-CCcEEEEeecCCCC--CCCCCccEEEeccccccccCcccchH-HHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 108 LRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALMEPELGHK-LGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 108 ~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l~~l~~~~~~~~-~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
.++....+ .|+.++++|+..+. ++++++|.|+......+......... ....++++++++|||||.|++.|-..+
T Consensus 70 ~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~ 148 (204)
T d2fcaa1 70 VQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG 148 (204)
T ss_dssp HHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH
T ss_pred HHHHHHHhccCchhcccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChH
Confidence 88776555 68999999998874 88999999997666555322110000 024799999999999999999885533
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.31 E-value=3.9e-12 Score=130.38 Aligned_cols=119 Identities=19% Similarity=0.277 Sum_probs=98.9
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhc----CCCCcEEEEe
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVR----DRSDMRWRVM 123 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~----~~~~i~~~~~ 123 (771)
|+.-...+..++.. .|+.+|||+|||+|.++..|++. | .++|+++|+++.+++.++++... ...++.+.++
T Consensus 81 ypkD~s~Ii~~l~i---~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~ 157 (264)
T d1i9ga_ 81 YPKDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157 (264)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred chHHHHHHHHHhCC---CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence 55556667777765 79999999999999999999987 4 46999999999999998776543 2368999999
Q ss_pred ecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
|+.+.++++++||.|+. +++++. .++.++.++|||||++++...+-..
T Consensus 158 d~~~~~~~~~~fDaV~l-----dlp~P~-------~~l~~~~~~LkpGG~lv~~~P~i~Q 205 (264)
T d1i9ga_ 158 DLADSELPDGSVDRAVL-----DMLAPW-------EVLDAVSRLLVAGGVLMVYVATVTQ 205 (264)
T ss_dssp CGGGCCCCTTCEEEEEE-----ESSCGG-------GGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred ccccccccCCCcceEEE-----ecCCHH-------HHHHHHHhccCCCCEEEEEeCccCh
Confidence 99999999999999985 356665 7899999999999999988766433
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.30 E-value=5.1e-12 Score=129.23 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=87.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.+..+|||||||+|.++..+++.. ..+++++|+ +.+++.++++....+ .+++++.+|+.+. . ..+||+|++..+
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~D~v~~~~v 155 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L-PRKADAIILSFV 155 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-SSCEEEEEEESC
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-c-ccchhheeeccc
Confidence 456799999999999999999873 358999998 557888877765544 5799999998763 2 357999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
||++.+.+ ..++|++++++|||||++++.+..
T Consensus 156 lh~~~d~~-----~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 156 LLNWPDHD-----AVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp GGGSCHHH-----HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cccCCchh-----hHHHHHHHHHhcCCCcEEEEEecc
Confidence 99986544 568999999999999999998864
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=9.8e-12 Score=132.03 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||||||+|.++..+++.|..+|+++|.|+ ++..+++.....+ .+++++.+|+.++++++++||+|++....+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 5789999999999999999999988999999997 4455655544433 579999999999999999999999988887
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
.+..... ...++..+.++|||||+++
T Consensus 117 ~~~~e~~----~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESM----MDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCC----HHHHHHHHHHHEEEEEEEE
T ss_pred eeccchh----HHHHHHHHHhccCCCeEEE
Confidence 7665432 6788999999999999976
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=2.4e-11 Score=122.01 Aligned_cols=126 Identities=18% Similarity=0.277 Sum_probs=99.8
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~ 122 (771)
.|...+..+...+..-+.....+|+.+|||+|||+|..+..|++. | .+.|+++|+|+.+++.+++++ +...++..+.
T Consensus 50 ~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a-~~~~~~~~i~ 128 (227)
T d1g8aa_ 50 IWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV-EERRNIVPIL 128 (227)
T ss_dssp ECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-SSCTTEEEEE
T ss_pred EECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH-HhcCCceEEE
Confidence 377777778777777777677789999999999999999999997 4 379999999999999887765 4557888888
Q ss_pred eecCCC---CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 123 MDMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 123 ~D~~~l---~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.|.... +.....+|+|+.. +.+ ++ ....++.+++++|||||++++...+
T Consensus 129 ~d~~~~~~~~~~~~~vD~i~~d--~~~---~~----~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 129 GDATKPEEYRALVPKVDVIFED--VAQ---PT----QAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp CCTTCGGGGTTTCCCEEEEEEC--CCS---TT----HHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EECCCcccccccccceEEEEEE--ccc---cc----hHHHHHHHHHHhcccCCeEEEEEEC
Confidence 888654 3445678888752 222 11 1568999999999999999988754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.3e-11 Score=123.86 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=93.2
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcC------CCCcEE
Q 004164 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD------RSDMRW 120 (771)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~------~~~i~~ 120 (771)
..+.+...+.+++.. ..+|+.+|||||||+|..+..|++. + .++|+++|+++.+++.+++.+.+. ..++.+
T Consensus 58 s~P~~~a~~le~L~~-~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~ 136 (224)
T d1i1na_ 58 SAPHMHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 136 (224)
T ss_dssp CCHHHHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred hhhHHHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEE
Confidence 345555667776631 1268899999999999999999886 4 358999999999999887766543 257899
Q ss_pred EEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 121 ~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.++|.....+++++||+|++.+++++++ ..+.+.|||||++++...
T Consensus 137 ~~gD~~~~~~~~~~fD~I~~~~~~~~ip-------------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 137 VVGDGRMGYAEEAPYDAIHVGAAAPVVP-------------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp EESCGGGCCGGGCCEEEEEECSBBSSCC-------------HHHHHTEEEEEEEEEEES
T ss_pred EEeecccccchhhhhhhhhhhcchhhcC-------------HHHHhhcCCCcEEEEEEc
Confidence 9999998888888999999999888753 347789999999998653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.24 E-value=1.1e-11 Score=126.05 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=86.6
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFM 131 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~ 131 (771)
.+..++.. .|+.+|||+|||+|.++..|++. + .++|+++|+++.+++.|+++.... ..++++...|+.+. ++
T Consensus 76 ~Ii~~l~i---~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~ 151 (250)
T d1yb2a1 76 YIIMRCGL---RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-IS 151 (250)
T ss_dssp -----CCC---CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CC
T ss_pred HHHHHcCC---CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cc
Confidence 34455443 79999999999999999999986 3 469999999999999998876543 26899999999886 56
Q ss_pred CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++||.|+.. ++++. .++.++.++|||||++++...+
T Consensus 152 ~~~fD~V~ld-----~p~p~-------~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 152 DQMYDAVIAD-----IPDPW-------NHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp SCCEEEEEEC-----CSCGG-------GSHHHHHHTEEEEEEEEEEESS
T ss_pred cceeeeeeec-----CCchH-------HHHHHHHHhcCCCceEEEEeCC
Confidence 7899999852 44444 6799999999999999987655
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2e-11 Score=128.62 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||||||+|.++..+++.|..+|+++|.|+.++. +++..... ..+++++.+|+.++++++++||+|++....
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 112 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence 367899999999999999999999889999999998875 43433332 367999999999999988999999998777
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 176 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii 176 (771)
+.+.... ....++....++|+|||+++-
T Consensus 113 ~~~~~e~----~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 113 YFLLFES----MLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTBTTTC----HHHHHHHHHHHHEEEEEEEES
T ss_pred eeccccc----ccHHHHHHHHhcCCCCcEEec
Confidence 6655432 366888888999999999873
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.21 E-value=3e-11 Score=120.91 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=90.4
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (771)
.+.+...+.+.+.. .++.+|||||||+|.++..|+..+. +|+++|+++.+++.++++. ....++.++.+|.....
T Consensus 55 ~p~~~a~ml~~L~l---~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~-~~~~nv~~~~~d~~~g~ 129 (224)
T d1vbfa_ 55 ALNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLL-SYYNNIKLILGDGTLGY 129 (224)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHH-TTCSSEEEEESCGGGCC
T ss_pred hhhhHHHHHHHhhh---cccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHH-hcccccccccCchhhcc
Confidence 44555566777765 7899999999999999999998865 9999999999999887665 44579999999988765
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.+.++||+|+..+++.+++ ..+.+.|+|||++++.-
T Consensus 130 ~~~~pfD~Iiv~~a~~~ip-------------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 130 EEEKPYDRVVVWATAPTLL-------------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp GGGCCEEEEEESSBBSSCC-------------HHHHHTEEEEEEEEEEE
T ss_pred hhhhhHHHHHhhcchhhhh-------------HHHHHhcCCCCEEEEEE
Confidence 5568899999988877653 34567899999998853
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.1e-11 Score=129.38 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=87.8
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc----------CCCCcEEEEee
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR----------DRSDMRWRVMD 124 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~----------~~~~i~~~~~D 124 (771)
.+.+.+. .+++++|||+|||+|.++..++.. +..+++|||+|+.+++.+.+.... ...+++|+++|
T Consensus 142 ~~~~~~~---l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 142 QMIDEIK---MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHSC---CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHcC---CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 3444444 378999999999999999998876 667899999999999887655432 23579999999
Q ss_pred cCCCCCCCCCc--cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 125 MTSMQFMDETF--DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 125 ~~~l~~~~~sF--DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+.++++.+..| |+|++++.++. . + ....+.++.+.|||||++++...
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f~-~--~-----~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAFG-P--E-----VDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTTC-H--H-----HHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccccccccccCcceEEEEcceecc-h--H-----HHHHHHHHHHhCCCCcEEEEecc
Confidence 99988776554 67777654432 2 2 56899999999999999988653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=2.4e-11 Score=128.28 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=85.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||||||+|.++..+++.|..+|+++|.|+.+. .+++..... ..+++++++|+.+++++.++||+|++....+
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~-~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-YAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHH-HHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHh-hhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 5789999999999999999999877999999998664 454443333 3569999999999999999999999987777
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
.+.... .++.++..+.++|||||+++
T Consensus 112 ~l~~e~----~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 112 CLFYES----MLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TBTBTC----CHHHHHHHHHHHEEEEEEEE
T ss_pred eeccHH----HHHHHHHHHHhcCCCCeEEE
Confidence 665433 26789999999999999976
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.18 E-value=4.8e-11 Score=122.14 Aligned_cols=106 Identities=21% Similarity=0.125 Sum_probs=87.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
....+|||||||+|.++..+++. +..+++++|+ +.+++.++++....+ .++.+...|+.+ +.+ .+||+|++..+
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~v 156 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFV 156 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESC
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhcccc
Confidence 45679999999999999999987 3358999998 677887777665443 578999999876 444 46999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
||++.+.+ ..++|++++++|||||++++++..
T Consensus 157 Lh~~~d~~-----~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 157 LLNWSDED-----ALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp GGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCcHH-----HHHHHHHHHhhcCCcceeEEEEec
Confidence 99986544 678999999999999999998864
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.17 E-value=8.2e-11 Score=116.16 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=88.7
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCCccEEEecccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGGL 144 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l 144 (771)
...|||||||+|..+..++.. +...++|+|+++.++..+.++....+ .++.++.+|+..+. +++.++|.|+....-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 458999999999999999987 45689999999999999888776544 68999999998874 788999999865544
Q ss_pred ccccCcccch-HHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 145 DALMEPELGH-KLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 145 ~~l~~~~~~~-~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.+........ -....+|+.++++|||||.+++.|-..+.
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y 151 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGL 151 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHH
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccH
Confidence 3322111000 01258899999999999999998855443
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=9.9e-11 Score=120.26 Aligned_cols=118 Identities=15% Similarity=0.254 Sum_probs=93.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeec
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~ 125 (771)
|+.-...+..+++. .|+.+|||+|||+|.++..|++. + .++|+++|+++.+++.|++.....+ .++.+...|+
T Consensus 88 ypkd~~~Ii~~l~i---~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~ 164 (266)
T d1o54a_ 88 YPKDSSFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI 164 (266)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG
T ss_pred chHHHHHHHHhhCC---CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc
Confidence 44555567777765 79999999999999999999986 3 3699999999999999988776554 4577777776
Q ss_pred CCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 126 ~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.. .++...||.|+. +++++. .++.++.++|||||++++...+-+.
T Consensus 165 ~~-~~~~~~~D~V~~-----d~p~p~-------~~l~~~~~~LKpGG~lv~~~P~~~Q 209 (266)
T d1o54a_ 165 SE-GFDEKDVDALFL-----DVPDPW-------NYIDKCWEALKGGGRFATVCPTTNQ 209 (266)
T ss_dssp GG-CCSCCSEEEEEE-----CCSCGG-------GTHHHHHHHEEEEEEEEEEESSHHH
T ss_pred cc-cccccceeeeEe-----cCCCHH-------HHHHHHHhhcCCCCEEEEEeCcccH
Confidence 54 456788999874 455554 7899999999999999988765333
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=5.4e-11 Score=119.66 Aligned_cols=109 Identities=10% Similarity=0.007 Sum_probs=86.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++.++....+ .++++||+||.+++.|++++.- ...+++++.+|+........
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~----------- 118 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-QTHKVIPLKGLWEDVAPTLP----------- 118 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGG-CSSEEEEEESCHHHHGGGSC-----------
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhh-cccccccccccccccccccc-----------
Confidence 3457999999999999999988765 4899999999999999999853 34678899999988766544
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-ccHHHHHHHHHccCCCcEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+||.|++|....... ..++ ....+++.++++|+|||+|++
T Consensus 119 --------------------~~~fD~i~fD~~~~~~~------~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 119 --------------------DGHFDGILYDTYPLSEE------TWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp --------------------TTCEEEEEECCCCCBGG------GTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred --------------------cccccceeecccccccc------cccccCHHHHHHHHHHHcCCCcEEEE
Confidence 46799999988655221 2222 245689999999999999986
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.12 E-value=7.3e-11 Score=117.29 Aligned_cols=138 Identities=13% Similarity=0.085 Sum_probs=106.1
Q ss_pred CCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHH
Q 004164 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKV 102 (771)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~ 102 (771)
.|-...|+...|......-....+...+.+...+.+.++. .++.+|||||||+|..+..|+.. | .+|+++|.++.
T Consensus 37 ~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~l---~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~ 112 (215)
T d1jg1a_ 37 LSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPE 112 (215)
T ss_dssp GGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHH
T ss_pred hcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhcc---CccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHH
Confidence 4666667766675542111112234455666677778775 78999999999999999999876 5 47999999999
Q ss_pred HHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 103 VISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 103 ~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+++.++++....+ .++.++++|..+.....+.||.|+..+++..++ ..+...|+|||++++.-
T Consensus 113 l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip-------------~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 113 LVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIP-------------EPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCC-------------HHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccccCC-------------HHHHHhcCCCCEEEEEE
Confidence 9999988776655 789999999988766778999999999888764 23567899999998864
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.11 E-value=1.1e-10 Score=116.92 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=91.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
.++++||.||.+.|..+.++...+| +.+|+++|+||...++|+++| |+ +++++++++|+.+++.+....
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~--~~~i~~~~g~a~~~L~~l~~~----- 130 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPVLDEMIKD----- 130 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHC-----
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc--ccceeeeehHHHHHHHHHHhc-----
Confidence 3678999999999999999998887 579999999999999999999 55 579999999999999987521
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
.....+||+||+|++... ..++++.+..+|+|||++++.
T Consensus 131 ---------------------~~~~~~fD~iFiDa~k~~-------------y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 131 ---------------------EKNHGSYDFIFVDADKDN-------------YLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp ---------------------GGGTTCBSEEEECSCSTT-------------HHHHHHHHHHHBCTTCCEEEE
T ss_pred ---------------------cccCCceeEEEeccchhh-------------hHHHHHHHHhhcCCCcEEEEc
Confidence 011357999999987753 278999999999999999875
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.7e-10 Score=114.98 Aligned_cols=107 Identities=15% Similarity=0.265 Sum_probs=91.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
-++++||.||.|+|..+.++...+| +.+|+++|+||...++|+++| |+ .+++++++||+.+.+.+...
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~--~~~i~~~~Gda~e~l~~~~~------ 129 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALETLDELLA------ 129 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHH------
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc--cceEEEEEeehhhcchhhhh------
Confidence 4678999999999999999988876 579999999999999999998 55 57899999999999987642
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
......||+|++|.+.... .++++.+.++|+|||++++.
T Consensus 130 ---------------------~~~~~~fD~ifiD~dk~~y-------------~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 130 ---------------------AGEAGTFDVAVVDADKENC-------------SAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp ---------------------TTCTTCEEEEEECSCSTTH-------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------hcccCCccEEEEeCCHHHH-------------HHHHHHHHHHhcCCcEEEEe
Confidence 1123679999999866532 78899999999999999984
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=4.6e-10 Score=118.22 Aligned_cols=116 Identities=18% Similarity=0.261 Sum_probs=88.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhc------------CC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVR------------DR 115 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~------------~~ 115 (771)
|+.-...+..++.. .|+.+|||+|||+|.++..|++. | .++|+++|+++.+++.|++.... ..
T Consensus 83 ypkD~~~Il~~l~i---~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~ 159 (324)
T d2b25a1 83 FPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 159 (324)
T ss_dssp CHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred ccccHHHHHHHhCC---CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 44445567777765 79999999999999999999987 4 46899999999999988776542 12
Q ss_pred CCcEEEEeecCCCC--CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 116 SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 116 ~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.++.+...|+.+.. +++.+||.|+. .++++. .++.++.++|||||++++...+
T Consensus 160 ~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~-------~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 160 DNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH-------VTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp CCEEEEESCTTCCC-------EEEEEE-----CSSSTT-------TTHHHHGGGEEEEEEEEEEESS
T ss_pred cceeEEecchhhcccccCCCCcceEee-----cCcCHH-------HHHHHHHHhccCCCEEEEEeCC
Confidence 57999999998763 45678999984 245544 6799999999999999987654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=2.4e-10 Score=117.48 Aligned_cols=109 Identities=19% Similarity=0.159 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.+.+|||+|||+|..+..++.. +..+|+++|+|+.+++.+++.+...+ .++.++++|+.+ ++++++||+|+++-..-
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhh
Confidence 5679999999999999999876 45699999999999998876654444 469999999877 45667999999874321
Q ss_pred c------------------ccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 146 A------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 146 ~------------------l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
. +...+++.....+++.+..++|+|||.+++.
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 1111223345889999999999999998884
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.97 E-value=7.1e-10 Score=117.16 Aligned_cols=134 Identities=17% Similarity=0.119 Sum_probs=100.0
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEE
Q 004164 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRW 120 (771)
Q Consensus 43 ~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~ 120 (771)
...+|.+....+..+..++. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.+...+ .++++
T Consensus 125 ~tG~flDqr~~r~~~~~~~~-----~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~ 199 (324)
T d2as0a2 125 KTGFFLDQRENRLALEKWVQ-----PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKF 199 (324)
T ss_dssp SSCCCSTTHHHHHHHGGGCC-----TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred ccCcccchhhHHHHHHhhcC-----CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCcccee
Confidence 34566666666666666653 689999999999999999999887799999999999998877766555 46899
Q ss_pred EEeecCCC----CCCCCCccEEEeccccccccCcc--cchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 121 RVMDMTSM----QFMDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 121 ~~~D~~~l----~~~~~sFDlVi~~~~l~~l~~~~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++|+.+. +....+||+|++.-.-....... .......+++....++|+|||++++.+.+.
T Consensus 200 ~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 200 IVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred eechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99998753 34567899999754332211111 011236678999999999999999998764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.95 E-value=3.9e-09 Score=102.22 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=90.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|+|.++..+.... .+|++||+||.+++.|++.+ |+ .++++++.+|+.+.+..
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl--~~~v~~~~gda~~~~~~---------- 97 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGL--GDNVTLMEGDAPEALCK---------- 97 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTC--CTTEEEEESCHHHHHTT----------
T ss_pred CCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCC--CcceEEEECchhhcccc----------
Confidence 456789999999999999887764 48999999999999999976 55 46899999999887543
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
...||+|+++.... ...++++.+.+.|+|+|.++++....+.
T Consensus 98 -----------------------~~~~D~v~~~~~~~-------------~~~~~~~~~~~~LkpgG~lvi~~~~~e~-- 139 (186)
T d1l3ia_ 98 -----------------------IPDIDIAVVGGSGG-------------ELQEILRIIKDKLKPGGRIIVTAILLET-- 139 (186)
T ss_dssp -----------------------SCCEEEEEESCCTT-------------CHHHHHHHHHHTEEEEEEEEEEECBHHH--
T ss_pred -----------------------cCCcCEEEEeCccc-------------cchHHHHHHHHHhCcCCEEEEEeecccc--
Confidence 25699999964222 1278999999999999999988754432
Q ss_pred HHHHHHHHHHh
Q 004164 697 KDMVISRMKMV 707 (771)
Q Consensus 697 ~~~v~~~l~~v 707 (771)
...+.+.++..
T Consensus 140 ~~~~~~~l~~~ 150 (186)
T d1l3ia_ 140 KFEAMECLRDL 150 (186)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 23345555554
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.94 E-value=1.4e-09 Score=108.59 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=88.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc----C---CCeEEEEcCCHHHHHHHHHHhhc------CCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G---FHGITNVDFSKVVISDMLRRNVR------DRSD 117 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~----g---~~~V~~vDiS~~~i~~~~~~~~~------~~~~ 117 (771)
+.+...+.+++.. ..+++.+|||||||+|.++..|+.. | ..+|+++|+++.+++.+++.... ...+
T Consensus 64 P~~~a~~l~~L~~-~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n 142 (223)
T d1r18a_ 64 PHMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ 142 (223)
T ss_dssp HHHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccE
Confidence 4455566666621 1268999999999999999888764 2 13799999999999988665432 1258
Q ss_pred cEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 118 MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 118 i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+.+..+|..+...+.++||.|+..+++..++ ..+.+.||+||++++.-.
T Consensus 143 v~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p-------------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 143 LLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP-------------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp EEEEESCGGGCCGGGCSEEEEEECSCBSSCC-------------HHHHHTEEEEEEEEEEES
T ss_pred EEEEecccccccccccceeeEEEEeechhch-------------HHHHHhcCCCcEEEEEEe
Confidence 9999999988766778999999999887654 346789999999988653
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.93 E-value=3.2e-09 Score=104.52 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=97.9
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+-||+||+|.|.....|+...|+..+++||+++.++..|.+...-..-++++++.+|+...+....
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~------------- 96 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE------------- 96 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC-------------
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC-------------
Confidence 3568999999999999999999999999999999999998777621112579999999998765543
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHH
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 701 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 701 (771)
...+|.|++ .-+++..--.-....+++++||+.+++.|+|||+|.+ .+.+..+.+.++
T Consensus 97 ------------------~~~~d~v~i--~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i--~TD~~~y~~~~~ 154 (204)
T d2fcaa1 97 ------------------PGEVKRVYL--NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF--KTDNRGLFEYSL 154 (204)
T ss_dssp ------------------TTSCCEEEE--ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE--EESCHHHHHHHH
T ss_pred ------------------chhhhcccc--ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE--EECChHHHHHHH
Confidence 356888887 3333321100112457889999999999999999886 356667666666
Q ss_pred HHHHHh
Q 004164 702 SRMKMV 707 (771)
Q Consensus 702 ~~l~~v 707 (771)
+.+.+.
T Consensus 155 ~~~~~~ 160 (204)
T d2fcaa1 155 KSFSEY 160 (204)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 666554
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=2.3e-09 Score=104.37 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=100.7
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
.+-+...+..++.. .++..+||++||+|..+..+++. +.++|+|+|.++.|++.++++...-..++.++.+++.++
T Consensus 8 ~pVll~evi~~l~~---~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~ 84 (192)
T d1m6ya2 8 IPVMVREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREA 84 (192)
T ss_dssp CCTTHHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGH
T ss_pred CchHHHHHHHhhCC---CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhH
Confidence 44556667777765 78899999999999999999886 446999999999999999888766567899999998875
Q ss_pred C-----CCCCCccEEEecccc--ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 129 Q-----FMDETFDVILDKGGL--DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 129 ~-----~~~~sFDlVi~~~~l--~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
. +..++||.|+....+ +.+.....+.......|..+.++|+|||+++++++.
T Consensus 85 ~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 85 DFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 2 556899998754332 122233334445789999999999999999999987
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.90 E-value=3.3e-09 Score=103.46 Aligned_cols=128 Identities=17% Similarity=0.252 Sum_probs=93.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|+|.++..+....+ +|++||+|+.+++.|++.+ ++ .+.+++++.+|..+.+.
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l-~~~~i~~~~~d~~~~~~----------- 116 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNL-DNYDIRVVHSDLYENVK----------- 116 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTC-TTSCEEEEECSTTTTCT-----------
T ss_pred CCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCC-ccceEEEEEcchhhhhc-----------
Confidence 4567999999999999999988764 7999999999999999876 44 34579999999865422
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
+..||+|+.+. +-. ...-....+++.+.+.|+|||.+++-+. .. ..
T Consensus 117 -----------------------~~~fD~Ii~~~--p~~-------~~~~~~~~~l~~~~~~LkpgG~l~i~~~-~~-~~ 162 (194)
T d1dusa_ 117 -----------------------DRKYNKIITNP--PIR-------AGKEVLHRIIEEGKELLKDNGEIWVVIQ-TK-QG 162 (194)
T ss_dssp -----------------------TSCEEEEEECC--CST-------TCHHHHHHHHHHHHHHEEEEEEEEEEEE-ST-HH
T ss_pred -----------------------cCCceEEEEcc--cEE-------ecchhhhhHHHHHHHhcCcCcEEEEEEe-Cc-CC
Confidence 36799999942 100 0011235789999999999998876432 22 23
Q ss_pred HHHHHHHHHHhccceEEee
Q 004164 697 KDMVISRMKMVFNHLFCLQ 715 (771)
Q Consensus 697 ~~~v~~~l~~vF~~v~~~~ 715 (771)
.+.+...+++.|..+-.+.
T Consensus 163 ~~~~~~~l~~~f~~~~~~~ 181 (194)
T d1dusa_ 163 AKSLAKYMKDVFGNVETVT 181 (194)
T ss_dssp HHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHHHhCCcEEEEE
Confidence 3556677888898766554
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.90 E-value=1.3e-09 Score=110.52 Aligned_cols=121 Identities=16% Similarity=0.238 Sum_probs=92.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
....+||++|+|+|+++.+|... .|..+|+++|+++..++.|++.+ .+....+++++.+|..+.+.
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~------------ 151 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS------------ 151 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC------------
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc------------
Confidence 45579999999999999988876 46779999999999999999987 22235689999999755321
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
+..||+|++|+-++ .+++..+.+.|+|||+|++.+.+ -+..
T Consensus 152 ----------------------~~~fD~V~ld~p~p---------------~~~l~~~~~~LKpGG~lv~~~P~--i~Qv 192 (250)
T d1yb2a1 152 ----------------------DQMYDAVIADIPDP---------------WNHVQKIASMMKPGSVATFYLPN--FDQS 192 (250)
T ss_dssp ----------------------SCCEEEEEECCSCG---------------GGSHHHHHHTEEEEEEEEEEESS--HHHH
T ss_pred ----------------------cceeeeeeecCCch---------------HHHHHHHHHhcCCCceEEEEeCC--cChH
Confidence 25699999976322 46799999999999999987644 3334
Q ss_pred HHHHHHHHHh-ccce
Q 004164 698 DMVISRMKMV-FNHL 711 (771)
Q Consensus 698 ~~v~~~l~~v-F~~v 711 (771)
..+++.|++. |.++
T Consensus 193 ~~~~~~l~~~gf~~i 207 (250)
T d1yb2a1 193 EKTVLSLSASGMHHL 207 (250)
T ss_dssp HHHHHHSGGGTEEEE
T ss_pred HHHHHHHHHCCCcee
Confidence 5566777655 6543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.90 E-value=3.3e-09 Score=108.36 Aligned_cols=118 Identities=12% Similarity=0.064 Sum_probs=91.0
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEe
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~ 123 (771)
|+......+..+...+. ++.+|||+|||+|.++..++..|.++|+++|+++.+++.+++.....+ .+++++++
T Consensus 90 f~~~~~~er~ri~~~~~-----~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~ 164 (260)
T d2frna1 90 FSPANVKERVRMAKVAK-----PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 164 (260)
T ss_dssp CCGGGHHHHHHHHHHCC-----TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred EecCCHHHHHHHHhhcC-----CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEc
Confidence 45544445556666663 689999999999999999998887799999999999998876655444 46999999
Q ss_pred ecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+.++.. .+.||.|++...-. ...++..+.++|++||.+.+..+.
T Consensus 165 D~~~~~~-~~~~D~Ii~~~p~~-----------~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 165 DNRDFPG-ENIADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp CTTTCCC-CSCEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred chHHhcc-CCCCCEEEECCCCc-----------hHHHHHHHHhhcCCCCEEEEEecc
Confidence 9998753 57899998642211 125688888999999998776554
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.89 E-value=1.4e-09 Score=117.35 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=75.7
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC----------CCCcEE-EEeecCCCCC---
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD----------RSDMRW-RVMDMTSMQF--- 130 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~----------~~~i~~-~~~D~~~l~~--- 130 (771)
.++++++||||||+|..+..++.. |.++++|||+|+.+++.|+++.... ...+.+ ...++...++
T Consensus 214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~ 293 (406)
T d1u2za_ 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 293 (406)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence 478999999999999999999876 7778999999999999887765421 122232 2333333221
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.-..+|+|+.+..++ .++ +...|.++.+.|||||++++..
T Consensus 294 ~~~~adVV~inn~~f---~~~-----l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 294 LIPQCDVILVNNFLF---DED-----LNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HGGGCSEEEECCTTC---CHH-----HHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccceEEEEecccC---chH-----HHHHHHHHHHhcCCCcEEEEec
Confidence 113578888765332 222 6799999999999999998754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.89 E-value=1e-08 Score=100.57 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=75.2
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEee
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D 124 (771)
+-|...+.+...+...+.......+.+|||+|||+|.++..++..|..+|+++|+++.+++.+++.+.....+..++++|
T Consensus 23 ~qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d 102 (201)
T d1wy7a1 23 EQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGD 102 (201)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESC
T ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECc
Confidence 33455555554444333221224678999999999999999988887799999999999998877766666778999999
Q ss_pred cCCCCCCCCCccEEEeccccccc
Q 004164 125 MTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 125 ~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
+..+ +++||+|+++-.....
T Consensus 103 ~~~~---~~~fD~Vi~nPP~~~~ 122 (201)
T d1wy7a1 103 VSEF---NSRVDIVIMNPPFGSQ 122 (201)
T ss_dssp GGGC---CCCCSEEEECCCCSSS
T ss_pred hhhh---CCcCcEEEEcCccccc
Confidence 8775 4679999988766543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.87 E-value=4.7e-09 Score=107.05 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=94.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||++|+|.|+++.+|... .|..+|+++|+++++++.|++.+ +....++++++++|+.+. .
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~--~--------- 163 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--E--------- 163 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--C---------
T ss_pred CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc--c---------
Confidence 45679999999999999988876 57789999999999999999865 112346799999997652 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
..+..||+||+|+.++ .+++..+++.|+|||.+++-+. .-+
T Consensus 164 ----------------------~~~~~fDaV~ldlp~P---------------~~~l~~~~~~LkpGG~lv~~~P--~i~ 204 (264)
T d1i9ga_ 164 ----------------------LPDGSVDRAVLDMLAP---------------WEVLDAVSRLLVAGGVLMVYVA--TVT 204 (264)
T ss_dssp ----------------------CCTTCEEEEEEESSCG---------------GGGHHHHHHHEEEEEEEEEEES--SHH
T ss_pred ----------------------ccCCCcceEEEecCCH---------------HHHHHHHHhccCCCCEEEEEeC--ccC
Confidence 1246799999987433 5679999999999999997663 344
Q ss_pred HHHHHHHHHHH--hccceEEe
Q 004164 696 TKDMVISRMKM--VFNHLFCL 714 (771)
Q Consensus 696 ~~~~v~~~l~~--vF~~v~~~ 714 (771)
....+++.|+. -|.++-.+
T Consensus 205 Qv~~~~~~l~~~~~f~~i~~~ 225 (264)
T d1i9ga_ 205 QLSRIVEALRAKQCWTEPRAW 225 (264)
T ss_dssp HHHHHHHHHHHHSSBCCCEEE
T ss_pred hHHHHHHHHHHcCCeecceEE
Confidence 45567777863 36654443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.87 E-value=3.3e-09 Score=99.47 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=84.2
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-CCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QFMD 132 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~~~~ 132 (771)
.+..++... -.+.+|||+|||+|.++.+.+.+|..+|+++|.++.+++.+++.....+ .+++++++|+... +...
T Consensus 4 ~~fn~l~~~--~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~ 81 (152)
T d2esra1 4 AIFNMIGPY--FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 81 (152)
T ss_dssp HHHHHHCSC--CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHHHhh--CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccc
Confidence 344555431 2578999999999999999999998899999999999997766654443 4589999998774 4567
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHH--HccccCeEEEEEEc
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTL 179 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~--rvLkpGG~~ii~~~ 179 (771)
++||+|+..-... .......+..+. ++|+|||.+++...
T Consensus 82 ~~fDiIf~DPPy~--------~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 82 GRFDLVFLDPPYA--------KETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp SCEEEEEECCSSH--------HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccceeEechhhc--------cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 8999999643221 122456666654 57999999887643
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.83 E-value=3.2e-09 Score=103.64 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=69.4
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 004164 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (771)
Q Consensus 44 ~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~ 123 (771)
+|.|...+.+...+...+.....-.+.+|||+|||+|.++..++..|..+|+++|+++.+++.+++.. .++.++++
T Consensus 24 leQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----~~~~~~~~ 99 (197)
T d1ne2a_ 24 LEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC----GGVNFMVA 99 (197)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC----TTSEEEEC
T ss_pred cccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc----ccccEEEE
Confidence 34455555665544333322111368899999999999999998888889999999999998775433 57899999
Q ss_pred ecCCCCCCCCCccEEEeccccc
Q 004164 124 DMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
|+.+++ ++||+|+++-.+.
T Consensus 100 D~~~l~---~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 100 DVSEIS---GKYDTWIMNPPFG 118 (197)
T ss_dssp CGGGCC---CCEEEEEECCCC-
T ss_pred ehhhcC---CcceEEEeCcccc
Confidence 998864 6899999876553
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=4.2e-09 Score=106.31 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=81.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|.++..|.+.++ .+|++||+++.+++.|++.. |+ +++++++.+|+.++. .
T Consensus 32 ~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl--~~~v~~~~~d~~~~~---~-------- 97 (245)
T d1nkva_ 32 KPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDAAGYV---A-------- 97 (245)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCCTTCC---C--------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhc--cccchhhhhHHhhcc---c--------
Confidence 3457899999999999999988876 69999999999999999875 54 678999999987641 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
+.+||+|+. ... .+...+ -..+|+.+++.|+|||.+++...
T Consensus 98 -----------------------~~~fD~v~~----~~~----~~~~~d--~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 98 -----------------------NEKCDVAAC----VGA----TWIAGG--FAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp -----------------------SSCEEEEEE----ESC----GGGTSS--SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred -----------------------cCceeEEEE----Eeh----hhccCC--HHHHHHHHHHHcCcCcEEEEEec
Confidence 367999986 111 111111 27899999999999999998754
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.83 E-value=5.3e-09 Score=104.69 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=85.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....|||+||+|+|.++..|.... .+|++||+++.+++.|+++..-..-+++.++.+|+.+. .
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~----~----------- 77 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL----P----------- 77 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC----C-----------
T ss_pred CCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccc----c-----------
Confidence 455789999999999999999876 48999999999999999987321225699999998652 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC-ChhHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR-SQATKD 698 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~-~~~~~~ 698 (771)
..+.+||+|++- .....+ +. -..+|+.+++.|+|||.+++..... ......
T Consensus 78 ------------------~~~~~fD~v~~~----~~l~~~----~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~ 129 (234)
T d1xxla_ 78 ------------------FPDDSFDIITCR----YAAHHF----SD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLD 129 (234)
T ss_dssp ------------------SCTTCEEEEEEE----SCGGGC----SC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH
T ss_pred ------------------ccccccceeeee----ceeecc----cC--HHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHH
Confidence 124689999871 111111 11 2789999999999999888754332 223333
Q ss_pred HHHHHHHH
Q 004164 699 MVISRMKM 706 (771)
Q Consensus 699 ~v~~~l~~ 706 (771)
.+...+..
T Consensus 130 ~~~~~~~~ 137 (234)
T d1xxla_ 130 EFVNHLNR 137 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 34444443
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.83 E-value=4.9e-09 Score=108.17 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=81.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
++..+||+||+|+|.++.+|.+.+ ..+|++||++|.+++.|+++. |+ +++++++.+|+.+. .
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl--~~~v~~~~~d~~~l----~-------- 130 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGSFLEI----P-------- 130 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECCTTSC----S--------
T ss_pred CCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccc--cccccccccccccc----c--------
Confidence 566799999999999999998875 458999999999999999886 55 56899999998653 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.++.+||+|+. .....-+ +. -..+|+.+.+.|+|||.|++.-+
T Consensus 131 ---------------------~~~~sfD~V~~----~~~l~h~----~d--~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 131 ---------------------CEDNSYDFIWS----QDAFLHS----PD--KLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp ---------------------SCTTCEEEEEE----ESCGGGC----SC--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------------------ccccccchhhc----cchhhhc----cC--HHHHHHHHHHhcCCCcEEEEEEe
Confidence 12467999986 1111111 11 26799999999999999998643
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.81 E-value=3e-09 Score=111.96 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC----CCCCCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM----QFMDETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l----~~~~~sFDlVi~~~ 142 (771)
++.+|||++||+|.++..++.. ..+|+++|+|+.+++.+++.+...+ .+++++++|+.+. +...++||+|+..-
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 5789999999999999998764 4599999999999999987776555 5799999998763 34567899999764
Q ss_pred ccccccCcc--cchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 143 GLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 143 ~l~~l~~~~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
.-....... ........++..+.++|+|||.+++.+.+.
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 433222111 111235678999999999999999988763
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=2.8e-08 Score=101.80 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=105.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
..+.+||++|+|+|+++..|....|+.+|++||+++..+++|++.. ++ .+++++.+|..+.+.
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~---~~v~~~~~d~~~~~~----------- 172 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFSALA----------- 172 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTGGGT-----------
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc---ccceeeecccccccC-----------
Confidence 4567899999999999999999999999999999999999999886 44 469999999765421
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeC---CCCC----CCCCCCcCCcCccc--------HHHHHHHHHccCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDV---DSPD----SSSGMTCPAADFVE--------GSFLLTVKDALSE 681 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~---~s~d----~~~g~s~pp~~f~~--------~~fl~~~~~~L~~ 681 (771)
+.+||+|+... ...+ +..--..|...+.. ..++..+.+.|++
T Consensus 173 -----------------------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~ 229 (274)
T d2b3ta1 173 -----------------------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS 229 (274)
T ss_dssp -----------------------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE
T ss_pred -----------------------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC
Confidence 25799999853 1110 00011223444443 3478889999999
Q ss_pred CcEEEEEeccCChhHHHHHHHHHHHh-ccceEEeeecCCccEEEEEe
Q 004164 682 QGLFIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGL 727 (771)
Q Consensus 682 ~Gilv~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~ 727 (771)
+|.+++-+-.... +.+.+.+.+. |..+..++--.+.+++++|.
T Consensus 230 ~G~l~lEig~~q~---~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 230 GGFLLLEHGWQQG---EAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp EEEEEEECCSSCH---HHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred CCEEEEEECchHH---HHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 9999997643332 3445555554 77776666455677888874
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=2.9e-09 Score=105.65 Aligned_cols=109 Identities=9% Similarity=0.199 Sum_probs=86.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
.+|++||.||+|.|..+.++...++ +.+|++||++|.+++.|++++ |+ .+++++++||+.+.+.+....
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl--~~~i~l~~Gd~~e~l~~l~~~----- 127 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL--QDKVTILNGASQDLIPQLKKK----- 127 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHGGGHHHH-----
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC--Cccceeeeccccccccchhhc-----
Confidence 4678999999999999999988875 579999999999999999887 65 578999999999998876521
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
.....||+|++|.+... ......|..+.++|+|||++++.
T Consensus 128 ----------------------~~~~~~D~ifiD~~~~~-----------~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 128 ----------------------YDVDTLDMVFLDHWKDR-----------YLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp ----------------------SCCCCEEEEEECSCGGG-----------HHHHHHHHHHTTCEEEEEEEEES
T ss_pred ----------------------ccccccceeeecccccc-----------cccHHHHHHHhCccCCCcEEEEe
Confidence 11357999999853321 12233466677889999999873
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.78 E-value=5.9e-09 Score=106.72 Aligned_cols=124 Identities=17% Similarity=0.226 Sum_probs=93.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
....+||++|+|+|+++.+|.... |..+|+++|++|.+++.|++.+. +...+++.+..+|.... .
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~---~---------- 168 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---F---------- 168 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---C----------
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc---c----------
Confidence 456899999999999999998876 67799999999999999999872 22256788888884221 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
....||.|++|+-++ .++++.+.+.|+|||.|++.+.+ -+..
T Consensus 169 ---------------------~~~~~D~V~~d~p~p---------------~~~l~~~~~~LKpGG~lv~~~P~--~~Qv 210 (266)
T d1o54a_ 169 ---------------------DEKDVDALFLDVPDP---------------WNYIDKCWEALKGGGRFATVCPT--TNQV 210 (266)
T ss_dssp ---------------------SCCSEEEEEECCSCG---------------GGTHHHHHHHEEEEEEEEEEESS--HHHH
T ss_pred ---------------------cccceeeeEecCCCH---------------HHHHHHHHhhcCCCCEEEEEeCc--ccHH
Confidence 135699999976332 46799999999999999987744 3444
Q ss_pred HHHHHHHHHh-ccceEEe
Q 004164 698 DMVISRMKMV-FNHLFCL 714 (771)
Q Consensus 698 ~~v~~~l~~v-F~~v~~~ 714 (771)
..+++.|++. |..+..+
T Consensus 211 ~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 211 QETLKKLQELPFIRIEVW 228 (266)
T ss_dssp HHHHHHHHHSSEEEEEEE
T ss_pred HHHHHHHHHCCceeEEEE
Confidence 5677888765 6544433
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.77 E-value=8.1e-09 Score=102.65 Aligned_cols=104 Identities=14% Similarity=0.218 Sum_probs=78.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..+.... .+|++||+++.+++.|++.+.-...++++++++|+.+. .
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l----~----------- 76 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM----P----------- 76 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC----C-----------
T ss_pred CCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccc----c-----------
Confidence 456799999999999999888876 48999999999999999886322346899999998653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-cHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+..||+|++-- . -.++- -..+|+.+.+.|+|||.|++.-
T Consensus 77 ------------------~~~~~fD~v~~~~--~---------l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 77 ------------------FTDERFHIVTCRI--A---------AHHFPNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp ------------------SCTTCEEEEEEES--C---------GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------ccccccccccccc--c---------ccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 1236799998721 1 11111 2579999999999999888743
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.73 E-value=2.4e-08 Score=98.06 Aligned_cols=128 Identities=17% Similarity=0.230 Sum_probs=97.1
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
.+-||+||+|.|.....++..+|+..+++||+++.++..|.+.. ++ ++++++.+||.++.....
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l---~Ni~~~~~da~~l~~~~~---------- 98 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV---PNIKLLWVDGSDLTDYFE---------- 98 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---SSEEEEECCSSCGGGTSC----------
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc---ccceeeecCHHHHhhhcc----------
Confidence 45699999999999999999999999999999999999887765 44 579999999987654332
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHH
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 698 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 698 (771)
...+|.|++ .-+|+..--.-.-..+++.+||+.+.+.|+|||.|.+ .+.+..+.+
T Consensus 99 ---------------------~~~~~~i~i--~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i--~TD~~~Y~~ 153 (204)
T d1yzha1 99 ---------------------DGEIDRLYL--NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF--KTDNRGLFE 153 (204)
T ss_dssp ---------------------TTCCSEEEE--ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE--EESCHHHHH
T ss_pred ---------------------CCceehhcc--cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE--EECCccHHH
Confidence 356888887 3344431111112357899999999999999999874 455667666
Q ss_pred HHHHHHHHh
Q 004164 699 MVISRMKMV 707 (771)
Q Consensus 699 ~v~~~l~~v 707 (771)
.++..+.+.
T Consensus 154 ~~le~~~~~ 162 (204)
T d1yzha1 154 YSLVSFSQY 162 (204)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
Confidence 666666554
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.72 E-value=1e-08 Score=103.20 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=79.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.++.+||+||+|+|.++..|.+.. .+|++||+++.|++.|++.+.- ...+++++.+|+.++ .
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~-~~~~i~~~~~d~~~l----~----------- 101 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKE-RNLKIEFLQGDVLEI----A----------- 101 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-TTCCCEEEESCGGGC----C-----------
T ss_pred CCCCEEEEeCCCCCccchhhcccc--eEEEEEeecccccccccccccc-ccccchheehhhhhc----c-----------
Confidence 455789999999999988888864 5899999999999999998742 234799999998664 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
...+||+|++= .+. ..-+ +++. -..+|+.+.++|+|||+|++-+.+
T Consensus 102 -------------------~~~~fD~I~~~-~~~--~~~~--~~~~--~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 102 -------------------FKNEFDAVTMF-FST--IMYF--DEED--LRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp -------------------CCSCEEEEEEC-SSG--GGGS--CHHH--HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------------------cccccchHhhh-hhh--hhcC--ChHH--HHHHHHHHHHHcCCCcEEEEEecc
Confidence 12579999881 111 0000 0111 147999999999999999986643
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.72 E-value=1.4e-08 Score=95.13 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=79.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
+..+||++|+|+|++...+..... .+|+.||+|+..++.+++.+.. ...++++++.+|+.+++....
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~----------- 81 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT----------- 81 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC-----------
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccc-----------
Confidence 457899999999999886666544 4999999999999999999832 235789999999999987643
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC-cCcccHHHHHHHHH--ccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA-ADFVEGSFLLTVKD--ALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp-~~f~~~~fl~~~~~--~L~~~Gilv~Nl 689 (771)
.+||+|++|. | ..-.....+..+.. .|+|+|++++-.
T Consensus 82 ---------------------~~fDiIf~DP------------Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 82 ---------------------GRFDLVFLDP------------PYAKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp ---------------------SCEEEEEECC------------SSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ---------------------cccceeEech------------hhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 6799999963 2 11223456666654 589999998753
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.72 E-value=2.3e-08 Score=104.88 Aligned_cols=131 Identities=18% Similarity=0.088 Sum_probs=93.2
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWR 121 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~ 121 (771)
.+|-+....+..+...+ .++.+|||+.||+|.++..++..|..+|+++|+|+.+++.+++.+...+ .+++++
T Consensus 126 GlflDqR~~r~~l~~~~-----~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i 200 (317)
T d2b78a2 126 GIFLDQRQVRNELINGS-----AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLV 200 (317)
T ss_dssp SSCGGGHHHHHHHHHTT-----TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEE
T ss_pred CCcHHHHHHHHHHHHHh-----hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEE
Confidence 35555444444444444 3578999999999999999888888899999999999998877664443 468999
Q ss_pred EeecCCC----CCCCCCccEEEeccccccccC--cccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 122 VMDMTSM----QFMDETFDVILDKGGLDALME--PELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 122 ~~D~~~l----~~~~~sFDlVi~~~~l~~l~~--~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++|+.+. .-..++||+|+..-.-..-.. ..........++..+.++|+|||.+++.+.+
T Consensus 201 ~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 201 VMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp ESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999653 224568999996432111000 0011123668999999999999999998876
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.71 E-value=3.6e-08 Score=100.01 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=92.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||++|+|+|.++..+.... .+|++||+||.+++.|++.... .+-..+++.+|..+.+.
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~-n~~~~~~~~~d~~~~~~-------------- 181 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKR-NGVRPRFLEGSLEAALP-------------- 181 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHH-TTCCCEEEESCHHHHGG--------------
T ss_pred CccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHH-cCCceeEEecccccccc--------------
Confidence 345799999999999998887753 5899999999999999987632 12245788899766432
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
..+||+|+..+... .-.+++..++++|+|||.|++.-+-.. ..+.
T Consensus 182 --------------------~~~fD~V~ani~~~-------------~l~~l~~~~~~~LkpGG~lilSgil~~--~~~~ 226 (254)
T d2nxca1 182 --------------------FGPFDLLVANLYAE-------------LHAALAPRYREALVPGGRALLTGILKD--RAPL 226 (254)
T ss_dssp --------------------GCCEEEEEEECCHH-------------HHHHHHHHHHHHEEEEEEEEEEEEEGG--GHHH
T ss_pred --------------------ccccchhhhccccc-------------cHHHHHHHHHHhcCCCcEEEEEecchh--hHHH
Confidence 25799999853221 126788999999999999998632222 2345
Q ss_pred HHHHHHHh-ccceEEeeecCCccEEEEEec
Q 004164 700 VISRMKMV-FNHLFCLQLEEDVNLVLFGLS 728 (771)
Q Consensus 700 v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~ 728 (771)
+.+.+++. |..+.... ..+++.+.++
T Consensus 227 v~~~~~~~Gf~~~~~~~---~~~Wv~l~~~ 253 (254)
T d2nxca1 227 VREAMAGAGFRPLEEAA---EGEWVLLAYG 253 (254)
T ss_dssp HHHHHHHTTCEEEEEEE---ETTEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEE---ECCEEEEEEe
Confidence 66666665 54333322 3356666543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.71 E-value=4.1e-09 Score=106.30 Aligned_cols=105 Identities=22% Similarity=0.249 Sum_probs=79.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+.+||+||+|+|.++..|.+.. .+|++||+++.|++.|++...- ...+++++.+|..++ ..
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~-~~~~v~~~~~d~~~~--~~------------ 98 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRS-QGLKPRLACQDISNL--NI------------ 98 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHH-TTCCCEEECCCGGGC--CC------------
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccc-cCccceeeccchhhh--cc------------
Confidence 456789999999999999998875 4899999999999999988632 234689999998765 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc----HHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
.++||+|++= .+. -..+.+ ..+|+.++++|+|||+|++.+..
T Consensus 99 --------------------~~~fD~i~~~-~~~---------~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 99 --------------------NRKFDLITCC-LDS---------TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp --------------------SCCEEEEEEC-TTG---------GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred --------------------ccccccccee-eee---------eeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 2579999871 111 112221 45899999999999999987753
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=2.4e-08 Score=104.81 Aligned_cols=129 Identities=14% Similarity=0.156 Sum_probs=92.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcC----------C-CCCCCeeEEEcchHHHHHhh
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFG----------F-TQDKSLKVHITDGIKFVREM 607 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~Fg----------~-~~~~r~~v~i~Dg~~~l~~~ 607 (771)
....+||.+|+|.|+++.+|... .|..+|.++|+++++++.|++.+. + ...+++.++++|..++....
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~ 176 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 176 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence 45679999999999999988876 467799999999999999998761 1 12467899999866543222
Q ss_pred ccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 608 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
. ...||+||+|+-++ .+++..+++.|+|||.|++
T Consensus 177 ~-------------------------------~~~fD~V~LD~p~P---------------~~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 177 K-------------------------------SLTFDAVALDMLNP---------------HVTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp -----------------------------------EEEEEECSSST---------------TTTHHHHGGGEEEEEEEEE
T ss_pred C-------------------------------CCCcceEeecCcCH---------------HHHHHHHHHhccCCCEEEE
Confidence 2 35799999987332 3468999999999999998
Q ss_pred EeccCChhHHHHHHHHHHHh---ccceEEeee
Q 004164 688 NLVSRSQATKDMVISRMKMV---FNHLFCLQL 716 (771)
Q Consensus 688 Nl~~~~~~~~~~v~~~l~~v---F~~v~~~~~ 716 (771)
-+.+ -+....+++.|+.. |..+-.+++
T Consensus 211 ~~P~--i~Qv~~~~~~l~~~~~~f~~i~~~E~ 240 (324)
T d2b25a1 211 YVVN--ITQVIELLDGIRTCELALSCEKISEV 240 (324)
T ss_dssp EESS--HHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred EeCC--HHHHHHHHHHHHHcCCCceeeEEEEE
Confidence 6633 34445677878754 554444443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.70 E-value=4.5e-08 Score=97.20 Aligned_cols=106 Identities=12% Similarity=0.233 Sum_probs=78.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|+|.++..|.+.+ |+.+|++||+++.|++.|++.. ......++.+..+|..++ .
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~----~-------- 105 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----E-------- 105 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC----C--------
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc----c--------
Confidence 345689999999999998888764 6789999999999999999986 333456788888877654 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
...+|+|++- ..- . -.++.+ -..+|+++++.|+|||.|++-
T Consensus 106 -----------------------~~~~d~i~~~--~~l--~--~~~~~d--~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 106 -----------------------IKNASMVILN--FTL--Q--FLPPED--RIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp -----------------------CCSEEEEEEE--SCG--G--GSCGGG--HHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------------------cccceeeEEe--eec--c--ccChhh--HHHHHHHHHHhCCCCceeecc
Confidence 2468888762 110 0 001111 247999999999999999975
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.70 E-value=5.8e-08 Score=97.09 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=100.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||.||+|+|..+..|....|...|.+||++|.+++.|++.-. ..+++..+.+|+.....-..
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~--~~~ni~~i~~d~~~~~~~~~----------- 139 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA--ERENIIPILGDANKPQEYAN----------- 139 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT--TCTTEEEEECCTTCGGGGTT-----------
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh--hhcccceEEEeeccCccccc-----------
Confidence 45678999999999999999999998899999999999999988753 35678888888875422111
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC------
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------ 693 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~------ 693 (771)
....+|+|+.|+...+ -...++.+++..|+|||.+++-+..+.
T Consensus 140 -------------------~~~~v~~i~~~~~~~~------------~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~ 188 (230)
T d1g8sa_ 140 -------------------IVEKVDVIYEDVAQPN------------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD 188 (230)
T ss_dssp -------------------TCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC
T ss_pred -------------------ccceeEEeeccccchH------------HHHHHHHHHHHhcccCceEEEEeeccccCCCCC
Confidence 1234666666553321 127789999999999999887654332
Q ss_pred -hhHHHHHHHHHHHh-ccceEEeeec--CCccEEEEEe
Q 004164 694 -QATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGL 727 (771)
Q Consensus 694 -~~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~ 727 (771)
....+.+.+.|++. |.-+-.+.+. +..+.++||.
T Consensus 189 ~~~~~~e~~~~L~~aGF~ive~idL~py~~~H~~vvg~ 226 (230)
T d1g8sa_ 189 PKEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCCcCCeEEEEEE
Confidence 23345666777765 7654444433 2345566664
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.5e-08 Score=100.53 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=79.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++..|....+ .+|++||+++.+++.|++.+......+++++.+|+.++- .
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~--~------------ 123 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT--P------------ 123 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC--C------------
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccc--c------------
Confidence 4457899999999999887765554 389999999999999999986433457899999988751 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~N 688 (771)
...+||+|++- .. -.++-+ .++|+.+++.|+|+|.+++-
T Consensus 124 -------------------~~~~fD~I~~~----~~-------l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~ 165 (222)
T d2ex4a1 124 -------------------EPDSYDVIWIQ----WV-------IGHLTDQHLAEFLRRCKGSLRPNGIIVIK 165 (222)
T ss_dssp -------------------CSSCEEEEEEE----SC-------GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------------------ccccccccccc----cc-------cccchhhhhhhHHHHHHHhcCCcceEEEE
Confidence 13689999972 11 112222 46999999999999988863
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.69 E-value=7e-08 Score=100.11 Aligned_cols=134 Identities=13% Similarity=0.185 Sum_probs=90.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.++.+||.+++|+|++...+.... ++|+.||+++..++.|++.+ |+ .+.+++++++|+.+|++....
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N~~ln~~-~~~~~~~i~~D~~~~l~~~~~------- 200 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGL-EQAPIRWICEDAMKFIQREER------- 200 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTC-TTSCEEEECSCHHHHHHHHHH-------
T ss_pred cCCCeEEEecCCCcHHHHHHHhCC--CeEEEEeChHHHHHHHHHhhhhhcc-cCCcEEEEeCCHHHhHHHHhh-------
Confidence 456899999999999988877653 58999999999999999988 44 345799999999999987652
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCC-CCCCCcCCcCc--ccHHHHHHHHHccCCCcE-EEEEeccC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS-SSGMTCPAADF--VEGSFLLTVKDALSEQGL-FIVNLVSR 692 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~-~~g~s~pp~~f--~~~~fl~~~~~~L~~~Gi-lv~Nl~~~ 692 (771)
.+.+||+||+|--+--. ..+. ...+ +-...+..++.+|+|+|. ++++..+.
T Consensus 201 ----------------------~~~~fD~IilDPP~f~~~~~~~---~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~ 255 (309)
T d2igta1 201 ----------------------RGSTYDIILTDPPKFGRGTHGE---VWQLFDHLPLMLDICREILSPKALGLVLTAYSI 255 (309)
T ss_dssp ----------------------HTCCBSEEEECCCSEEECTTCC---EEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred ----------------------cCCCCCEEEECCCcccccccch---hHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 24789999997421100 0000 0001 123456778899999885 55555443
Q ss_pred ChhHHHHHHHHHHHhcc
Q 004164 693 SQATKDMVISRMKMVFN 709 (771)
Q Consensus 693 ~~~~~~~v~~~l~~vF~ 709 (771)
.-+ ...+.+.+++.+.
T Consensus 256 ~~s-~~~~~~~~~~~~~ 271 (309)
T d2igta1 256 RAS-FYSMHELMRETMR 271 (309)
T ss_dssp TSC-HHHHHHHHHHHTT
T ss_pred CCC-HHHHHHHHHHHHH
Confidence 222 2233445555554
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.69 E-value=5.4e-08 Score=102.41 Aligned_cols=146 Identities=8% Similarity=0.096 Sum_probs=101.0
Q ss_pred ccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCC
Q 004164 513 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ 589 (771)
Q Consensus 513 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~ 589 (771)
+|.....+.+++.+. ....+||.+|+|+|+.+..+..... .+|++||+++..++.|++.+ |+
T Consensus 129 flDqr~~r~~~~~~~------------~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl-- 193 (324)
T d2as0a2 129 FLDQRENRLALEKWV------------QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGV-- 193 (324)
T ss_dssp CSTTHHHHHHHGGGC------------CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred ccchhhHHHHHHhhc------------CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCC--
Confidence 444555566654322 2457899999999999988877643 48999999999999999987 44
Q ss_pred CCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc--
Q 004164 590 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-- 667 (771)
Q Consensus 590 ~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-- 667 (771)
.++++++.+|+.+++..... .+.+||+||+|.-..-.. .....
T Consensus 194 ~~~~~~~~~d~~~~~~~~~~-----------------------------~~~~fD~Vi~DpP~~~~~------~~~~~~~ 238 (324)
T d2as0a2 194 EDRMKFIVGSAFEEMEKLQK-----------------------------KGEKFDIVVLDPPAFVQH------EKDLKAG 238 (324)
T ss_dssp GGGEEEEESCHHHHHHHHHH-----------------------------TTCCEEEEEECCCCSCSS------GGGHHHH
T ss_pred CccceeeechhhhhhHHHHh-----------------------------ccCCCCchhcCCccccCC------HHHHHHH
Confidence 45799999999999887652 246899999976332110 11111
Q ss_pred ---cHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHHHHHhcc
Q 004164 668 ---EGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFN 709 (771)
Q Consensus 668 ---~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 709 (771)
-.+++..+.++|+|||+|++-..+..-. .+.+.+.+.+++.
T Consensus 239 ~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~-~~~f~~~v~~a~~ 282 (324)
T d2as0a2 239 LRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-LQMFKDMIIAAGA 282 (324)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEeCCccCC-HHHHHHHHHHHHH
Confidence 2457888889999999999765444322 2344555555544
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.68 E-value=2.6e-08 Score=103.41 Aligned_cols=137 Identities=18% Similarity=0.067 Sum_probs=94.3
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCc
Q 004164 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDM 118 (771)
Q Consensus 42 ~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i 118 (771)
....+|.+....+..+.+++... .++.+|||++||+|.++..++..|. +|++||.|+.+++.+++.+...+ .++
T Consensus 108 ~~tG~f~dqr~nr~~~~~~~~~~--~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~ 184 (309)
T d2igta1 108 RHVGVFPEQIVHWEWLKNAVETA--DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPI 184 (309)
T ss_dssp SCCSCCGGGHHHHHHHHHHHHHS--SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCE
T ss_pred CccccccchhHHHHHHHHHHhhc--cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcE
Confidence 34456666666666666665421 3567999999999999999998887 89999999999998876654332 368
Q ss_pred EEEEeecCCC----CCCCCCccEEEeccccccccCccc---chHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 119 RWRVMDMTSM----QFMDETFDVILDKGGLDALMEPEL---GHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 119 ~~~~~D~~~l----~~~~~sFDlVi~~~~l~~l~~~~~---~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+|+++|+.+. ......||+|++.-.-........ .......++..+..+|+|||.+++.+.+.
T Consensus 185 ~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 185 RWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp EEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred EEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 9999999764 123578999996432221111100 01124567788899999999876666543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.68 E-value=4.7e-08 Score=97.51 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=100.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||.||+|+|.++.+|.... |.-+|.+||++|.+++.|++... ....+..+..|+...- ...
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~--~~~~~~~i~~d~~~~~-~~~---------- 138 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE--ERRNIVPILGDATKPE-EYR---------- 138 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS--SCTTEEEEECCTTCGG-GGT----------
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHH--hcCCceEEEEECCCcc-ccc----------
Confidence 456799999999999999999876 66799999999999999988763 2355777788875321 111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC-----
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS----- 693 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~----- 693 (771)
.....+|+|+.|+...+ ....++++++..|+|||.+++-+.+++
T Consensus 139 -------------------~~~~~vD~i~~d~~~~~------------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~ 187 (227)
T d1g8aa_ 139 -------------------ALVPKVDVIFEDVAQPT------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTK 187 (227)
T ss_dssp -------------------TTCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTS
T ss_pred -------------------ccccceEEEEEEccccc------------hHHHHHHHHHHhcccCCeEEEEEECCccCCCC
Confidence 11357999999864432 236789999999999999998654332
Q ss_pred --hhHHHHHHHHHHHhccceEEeee--cCCccEEEEEec
Q 004164 694 --QATKDMVISRMKMVFNHLFCLQL--EEDVNLVLFGLS 728 (771)
Q Consensus 694 --~~~~~~v~~~l~~vF~~v~~~~~--~~~~N~Vl~a~~ 728 (771)
......+...+++-|.-+-.+.+ -+..+.++||.+
T Consensus 188 ~~~~v~~~v~~l~~~gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 188 EPEQVFREVERELSEYFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEcCCCCCCceEEEEEEe
Confidence 22334444555566764433333 233466777765
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.67 E-value=2.5e-08 Score=98.32 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=96.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||.||+|+|.++.+|....|..+|++||++|.+++.|++...- .+++.++++|+...-..
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~--~~ni~~i~~d~~~~~~~------------- 119 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--RNNIIPLLFDASKPWKY------------- 119 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--CSSEEEECSCTTCGGGT-------------
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc--cCCceEEEeeccCcccc-------------
Confidence 455799999999999999999999988999999999999999887632 35788998887642111
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC-------
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR------- 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~------- 692 (771)
......+|+|+.|+...+ ....++.++.+.|+|||.+++-...+
T Consensus 120 -----------------~~~~~~vd~v~~~~~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~ 170 (209)
T d1nt2a_ 120 -----------------SGIVEKVDLIYQDIAQKN------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAE 170 (209)
T ss_dssp -----------------TTTCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSC
T ss_pred -----------------ccccceEEEEEecccChh------------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCC
Confidence 111256888888653321 23679999999999999999866432
Q ss_pred ChhHHHHHHHHHHHhccceEEeee
Q 004164 693 SQATKDMVISRMKMVFNHLFCLQL 716 (771)
Q Consensus 693 ~~~~~~~v~~~l~~vF~~v~~~~~ 716 (771)
.....+.+...+.+-|.-+-.+.+
T Consensus 171 ~~~~~~~~~~~l~~gf~i~E~i~L 194 (209)
T d1nt2a_ 171 PEEVFKSVLKEMEGDFKIVKHGSL 194 (209)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcc
Confidence 123455566777777875444443
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.66 E-value=4.2e-08 Score=95.43 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCcchhH----HHHHhc----C-CCeEEEEcCCHHHHHHHHHHh------------------hcCC-----
Q 004164 68 PPPQILVPGCGNSRLS----EHLYDA----G-FHGITNVDFSKVVISDMLRRN------------------VRDR----- 115 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls----~~La~~----g-~~~V~~vDiS~~~i~~~~~~~------------------~~~~----- 115 (771)
+..+|+.+|||+|.-. ..+.+. + .-+|+|+|+|+.+++.|++-. ....
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 4579999999999854 333332 1 126999999999999886321 0000
Q ss_pred ---------CCcEEEEeecCCCC-CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 116 ---------SDMRWRVMDMTSMQ-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 116 ---------~~i~~~~~D~~~l~-~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
..+.+...+..... .+.+.||+|+|.++|.++..+. ..++++++++.|+|||+|++-
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~-----~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT-----QEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH-----HHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHH-----HHHHHHHHHHHhCCCcEEEEe
Confidence 12345555554432 3457899999999999986544 789999999999999987754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.65 E-value=2.2e-08 Score=98.70 Aligned_cols=107 Identities=19% Similarity=0.306 Sum_probs=78.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
++..+||+||+|+|.++..|.+. +.+|+++|+++.+++.|++.+.- ....+..+.+|+.+. .
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~-~~~~~~~~~~d~~~l----~----------- 97 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKS-RESNVEFIVGDARKL----S----------- 97 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH-TTCCCEEEECCTTSC----C-----------
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhcc-ccccccccccccccc----c-----------
Confidence 34568999999999999999876 36899999999999999988732 234678888887763 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc-CCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC-PAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~-pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
..+..||+|++ ... +.+ |+.+ -..+|+.+.+.|+|||.|++-..+
T Consensus 98 ------------------~~~~~fD~I~~----~~~---l~~~~~~d--~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 98 ------------------FEDKTFDYVIF----IDS---IVHFEPLE--LNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp ------------------SCTTCEEEEEE----ESC---GGGCCHHH--HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ------------------ccCcCceEEEE----ecc---hhhCChhH--HHHHHHHHHHHcCcCcEEEEEEcC
Confidence 12467999987 111 111 1112 245899999999999999987643
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.62 E-value=3.6e-08 Score=100.18 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=77.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||++|+|.|.++..|..... .+|++||+++.+++.|++.+. ..+.++++++|..++ .
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~----~----------- 153 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETA----T----------- 153 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGC----C-----------
T ss_pred CCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhcccc--ccccceeEEcccccc----c-----------
Confidence 4567899999999988876554433 389999999999999999985 345689999998765 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~ 687 (771)
..+.+||+|++- .. -.++.+ ..||+.+++.|+|||.|++
T Consensus 154 ------------------~~~~~fD~I~~~----~v-------l~hl~d~d~~~~l~~~~~~LkpgG~iii 195 (254)
T d1xtpa_ 154 ------------------LPPNTYDLIVIQ----WT-------AIYLTDADFVKFFKHCQQALTPNGYIFF 195 (254)
T ss_dssp ------------------CCSSCEEEEEEE----SC-------GGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------------cCCCccceEEee----cc-------ccccchhhhHHHHHHHHHhcCCCcEEEE
Confidence 124689999881 11 122333 3789999999999999998
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.57 E-value=1.5e-07 Score=98.54 Aligned_cols=131 Identities=14% Similarity=0.123 Sum_probs=93.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||.+++|+|+.+..+.... ..+|++||+++..+++|++.+ |+ ...+++++.+|+.+|++....
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l-~~~~~~~i~~d~~~~l~~~~~-------- 213 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHL-DMANHQLVVMDVFDYFKYARR-------- 213 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTC-CCTTEEEEESCHHHHHHHHHH--------
T ss_pred CCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcc-cCcceEEEEccHHHHHHHHHh--------
Confidence 45789999999999987766543 348999999999999999998 44 335799999999999988652
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-----cHHHHHHHHHccCCCcEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-----~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.+.+||+||+|.-+-..+ +.... -.+.++.+.++|+|||+|++-..+.
T Consensus 214 ---------------------~~~~fD~Ii~DPP~f~~~------~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 214 ---------------------HHLTYDIIIIDPPSFARN------KKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp ---------------------TTCCEEEEEECCCCC-----------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ---------------------hcCCCCEEEEcChhhccc------hhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 246899999985322110 11111 2357888899999999999866444
Q ss_pred ChhHHHHHHHHHHHhcc
Q 004164 693 SQATKDMVISRMKMVFN 709 (771)
Q Consensus 693 ~~~~~~~v~~~l~~vF~ 709 (771)
.-. .+.+...+.+.|.
T Consensus 267 ~~~-~~~f~~~v~~a~~ 282 (317)
T d2b78a2 267 NMT-VSQFKKQIEKGFG 282 (317)
T ss_dssp TSC-HHHHHHHHHHHHT
T ss_pred cCC-HHHHHHHHHHHHH
Confidence 322 3345556666664
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=9.1e-08 Score=91.19 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=72.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC----CCCCCCccEEEeccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM----QFMDETFDVILDKGG 143 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l----~~~~~sFDlVi~~~~ 143 (771)
.+.+|||+|||+|.++.+++..|. +++++|.++.+++.+++.+...+...++...+...+ ....++||+|+..-.
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 578999999999999999988887 899999999999988766655444445555555432 245578999997543
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.+. +.. .....++. ..+|+|||++++...
T Consensus 120 Y~~--~~~---~~l~~l~~--~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 120 YAM--DLA---ALFGELLA--SGLVEAGGLYVLQHP 148 (171)
T ss_dssp TTS--CTT---HHHHHHHH--HTCEEEEEEEEEEEE
T ss_pred ccc--CHH---HHHHHHHH--cCCcCCCeEEEEEec
Confidence 221 111 11223332 358999999887653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.56 E-value=6.2e-08 Score=93.00 Aligned_cols=111 Identities=7% Similarity=-0.030 Sum_probs=77.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeeEEEcchHHHHHhh
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREM 607 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~------------~~~r~~v~i~Dg~~~l~~~ 607 (771)
.++.+||+||+|+|..+.+|.+.. .+|++||+++.+++.|++..+-. ....++++.+|..+.-...
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcC--CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 456799999999999999999873 69999999999999999986421 1244566667665432221
Q ss_pred ccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 608 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
...||+|+.-. . + +-...-....+++.+.+.|+|||.+++
T Consensus 97 --------------------------------~~~~D~i~~~~----~---l-~~l~~~~~~~~~~~i~~~LkpgG~l~l 136 (201)
T d1pjza_ 97 --------------------------------IGHCAAFYDRA----A---M-IALPADMRERYVQHLEALMPQACSGLL 136 (201)
T ss_dssp --------------------------------HHSEEEEEEES----C---G-GGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred --------------------------------ccceeEEEEEe----e---e-EecchhhhHHHHHHHHHhcCCCcEEEE
Confidence 14689987611 1 1 111111235789999999999998877
Q ss_pred EeccC
Q 004164 688 NLVSR 692 (771)
Q Consensus 688 Nl~~~ 692 (771)
.....
T Consensus 137 ~~~~~ 141 (201)
T d1pjza_ 137 ITLEY 141 (201)
T ss_dssp EEESS
T ss_pred EEccc
Confidence 55443
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=9.3e-08 Score=95.17 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=84.5
Q ss_pred ccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcC---CC
Q 004164 513 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFG---FT 588 (771)
Q Consensus 513 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~Fg---~~ 588 (771)
++..|+..+.+.-+...- .....+||+||+|+|.++..|.+. .|..+|++||+++.+++.|++.+. +.
T Consensus 56 ~is~P~~~a~~le~L~~~--------l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~ 127 (224)
T d1i1na_ 56 TISAPHMHAYALELLFDQ--------LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT 127 (224)
T ss_dssp EECCHHHHHHHHHHTTTT--------SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH
T ss_pred hhhhhHHHHHHHHHHhhc--------cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc
Confidence 566677655553322110 134568999999999988888775 456799999999999999998872 21
Q ss_pred --CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc
Q 004164 589 --QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF 666 (771)
Q Consensus 589 --~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f 666 (771)
...+++++++||..-... ...||+|+++..... .
T Consensus 128 ~~~~~~~~~~~gD~~~~~~~---------------------------------~~~fD~I~~~~~~~~-----------i 163 (224)
T d1i1na_ 128 LLSSGRVQLVVGDGRMGYAE---------------------------------EAPYDAIHVGAAAPV-----------V 163 (224)
T ss_dssp HHHTSSEEEEESCGGGCCGG---------------------------------GCCEEEEEECSBBSS-----------C
T ss_pred cccccceEEEEeecccccch---------------------------------hhhhhhhhhhcchhh-----------c
Confidence 236789999999653221 257999999643221 1
Q ss_pred ccHHHHHHHHHccCCCcEEEEEec
Q 004164 667 VEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 667 ~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.+.+.+.|+|||.+|+-+.
T Consensus 164 -----p~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 164 -----PQALIDQLKPGGRLILPVG 182 (224)
T ss_dssp -----CHHHHHTEEEEEEEEEEES
T ss_pred -----CHHHHhhcCCCcEEEEEEc
Confidence 1346778999999998664
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.56 E-value=7.9e-08 Score=97.38 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=77.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++..+.+.+|+.+++++|+ |.+++.|++++.- ...++++++.+|..+. .
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~---~----------- 143 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---L----------- 143 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---C-----------
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh---c-----------
Confidence 4557899999999999999999999999999998 7789999988721 1257899999997431 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~N 688 (771)
...||+|++- .. -.++-+ ..+|+++++.|+|||.|++.
T Consensus 144 ---------------------~~~~D~v~~~--~v---------lh~~~d~~~~~~L~~~~~~LkPGG~l~i~ 184 (253)
T d1tw3a2 144 ---------------------PRKADAIILS--FV---------LLNWPDHDAVRILTRCAEALEPGGRILIH 184 (253)
T ss_dssp ---------------------SSCEEEEEEE--SC---------GGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ---------------------ccchhheeec--cc---------cccCCchhhHHHHHHHHHhcCCCcEEEEE
Confidence 2469999871 11 111222 36799999999999988764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.56 E-value=8.1e-08 Score=95.38 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=77.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|.++..+.+.. .+|++||+++++++.|++.+. +.++++.+|..++ .
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~----~------------ 77 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK----DGITYIHSRFEDA----Q------------ 77 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGC----C------------
T ss_pred CCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc----ccccccccccccc----c------------
Confidence 46789999999999999988775 479999999999999999875 3689999887543 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc-HHHHHHHH-HccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLTVK-DALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~-~~fl~~~~-~~L~~~Gilv~Nl~~~ 692 (771)
.+.+||+|++ .+. -.++-+ ..+|..++ +.|+|||.+++-+...
T Consensus 78 ------------------~~~~fD~I~~----~~v-------leh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~ 122 (225)
T d2p7ia1 78 ------------------LPRRYDNIVL----THV-------LEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 122 (225)
T ss_dssp ------------------CSSCEEEEEE----ESC-------GGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred ------------------cccccccccc----cce-------eEecCCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence 1367999987 221 122222 67788887 6799999999977543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.55 E-value=6.1e-08 Score=99.00 Aligned_cols=121 Identities=15% Similarity=0.098 Sum_probs=81.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l- 128 (771)
.+.+.+.+++.. .+..++||+|||+|..+..++..+..+|+++|+|+.+++.+++.+...+ .++.+...|+.+.
T Consensus 97 ~lv~~~~~~~~~---~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~ 173 (271)
T d1nv8a_ 97 ELVELALELIRK---YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF 173 (271)
T ss_dssp HHHHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG
T ss_pred hhhhhhhhhhcc---ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc
Confidence 334444444433 3456899999999999999987776799999999999998866654443 3567788888764
Q ss_pred CCCCCCccEEEecccc----------------ccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 129 QFMDETFDVILDKGGL----------------DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l----------------~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+...++||+|+++-.- .++...+++...++++ +.++|+|||++++..
T Consensus 174 ~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 174 KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEI 236 (271)
T ss_dssp GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEEC
T ss_pred ccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEE
Confidence 2234789999987321 0111122232334454 457899999877743
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.54 E-value=7.2e-08 Score=93.77 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=80.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|.|..+.++.+.. .+|++||+++.+++.|++...-..-+++.+.++|..+..
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~---------------- 91 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT---------------- 91 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC----------------
T ss_pred CCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc----------------
Confidence 34689999999999999999875 589999999999999998874322356889988876541
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....||+|+.-. . . ...|++. -..+++.+.+.|+|+|++++.....
T Consensus 92 ------------------~~~~fD~I~~~~--~--~--~~~~~~~--~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 92 ------------------FDGEYDFILSTV--V--M--MFLEAQT--IPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp ------------------CCCCEEEEEEES--C--G--GGSCTTH--HHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ------------------ccccccEEEEee--e--e--ecCCHHH--HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 135799998722 1 0 1112222 2579999999999999999865443
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=5.6e-08 Score=99.49 Aligned_cols=98 Identities=12% Similarity=0.199 Sum_probs=79.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.++.+||+||+|+|.+...|.+.+|+.++++||+++.+++.|++.. ++++++++|+.+. .
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l----~----------- 142 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRL----P----------- 142 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSC----S-----------
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhc----c-----------
Confidence 5677999999999999999999999999999999999999999874 4689999998653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+..||+|+.- ++ |. .++.+.+.|+|||.|++.....
T Consensus 143 ------------------~~~~sfD~v~~~-~~----------~~------~~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 143 ------------------FSDTSMDAIIRI-YA----------PC------KAEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp ------------------BCTTCEEEEEEE-SC----------CC------CHHHHHHHEEEEEEEEEEEECT
T ss_pred ------------------CCCCCEEEEeec-CC----------HH------HHHHHHHHhCCCcEEEEEeeCC
Confidence 124679999861 11 11 1577899999999999887544
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=9.4e-08 Score=94.39 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=75.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++..|.+.. +..+|+++|+++.+++.|++.+.-..-+++.++++|+.+-...
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~------------ 141 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE------------ 141 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG------------
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc------------
Confidence 456799999999999998888765 5679999999999999999988433346788889998653221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...||+|+++..-. ++ .+.+.+.|+|||.+++-+
T Consensus 142 ---------------------~~~fD~I~~~~~~~-----------~~-----p~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 142 ---------------------FSPYDVIFVTVGVD-----------EV-----PETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp ---------------------GCCEEEEEECSBBS-----------CC-----CHHHHHHEEEEEEEEEEB
T ss_pred ---------------------ccchhhhhhhccHH-----------Hh-----HHHHHHhcCCCcEEEEEE
Confidence 25699999854211 11 134567799999999754
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.53 E-value=1.7e-07 Score=96.43 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=80.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|.++.++.+..+ .+|++|++++..++.|++.. |+ ..++.+...|..++
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l--~~~~~~~~~d~~~~------------- 114 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDT--NRSRQVLLQGWEDF------------- 114 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCC--SSCEEEEESCGGGC-------------
T ss_pred CCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhcc--ccchhhhhhhhhhh-------------
Confidence 4567999999999999999988875 59999999999999999886 44 56788888886543
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+||.|+. . +|.+.-..=.-+.||+.+++.|+|||.+++..+..
T Consensus 115 -----------------------~~~fD~i~s----i----~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~ 159 (280)
T d2fk8a1 115 -----------------------AEPVDRIVS----I----EAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 159 (280)
T ss_dssp -----------------------CCCCSEEEE----E----SCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred -----------------------ccchhhhhH----h----hHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeec
Confidence 257999986 1 12111111112689999999999999999986543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.52 E-value=5.8e-08 Score=100.00 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=79.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
.++.+||+||+|.|.++..|...+|. .+|++||+++.+++.|++.+.-. ..+++++++|+.++ .
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-~~~~~f~~~d~~~~----~---------- 90 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-PYDSEFLEGDATEI----E---------- 90 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-SSEEEEEESCTTTC----C----------
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-cccccccccccccc----c----------
Confidence 56789999999999999999998874 68999999999999999988431 23688899987543 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
. ..+||+|+.-- ....+.- -..+|+.+.+.|+|||.+++-
T Consensus 91 -------------------~-~~~fD~v~~~~----~l~~~~d------~~~~l~~~~~~LkpgG~lii~ 130 (281)
T d2gh1a1 91 -------------------L-NDKYDIAICHA----FLLHMTT------PETMLQKMIHSVKKGGKIICF 130 (281)
T ss_dssp -------------------C-SSCEEEEEEES----CGGGCSS------HHHHHHHHHHTEEEEEEEEEE
T ss_pred -------------------c-cCCceEEEEeh----hhhcCCC------HHHHHHHHHHHcCcCcEEEEE
Confidence 0 24699999721 1111111 257999999999999998864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=1.8e-07 Score=90.09 Aligned_cols=104 Identities=11% Similarity=0.069 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC-CCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-QFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l-~~~~~sFDlVi~~~~l~ 145 (771)
.+.+|||++||+|.++.+.+.+|..+|+.||.++.+++.+++...... .+..++..|+.++ .....+||+|+..-...
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 467999999999999999999999899999999999997766554433 5788888888764 34567899999754322
Q ss_pred cccCcccchHHHHHHHHHHHH--ccccCeEEEEEEc
Q 004164 146 ALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTL 179 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~r--vLkpGG~~ii~~~ 179 (771)
. .....++..+.+ +|+++|.+++...
T Consensus 123 ~--------~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 123 R--------GLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp T--------TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred c--------chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1 114566666654 6999999888653
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.51 E-value=1.9e-07 Score=97.85 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=85.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||.+|+|+|+.+..+... ..+|++||+++..++.|++.+....-++++++.+|+.++++....
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~----------- 211 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK----------- 211 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH-----------
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHh-----------
Confidence 4579999999999998877654 358999999999999999987322114689999999999887652
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-----cHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-----~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.+.+||+||+|.-..-.. ..... -.+++..+.++|+|||+|++...+.
T Consensus 212 ------------------~~~~fD~Vi~DpP~~~~~------~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 212 ------------------EGERFDLVVLDPPAFAKG------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp ------------------TTCCEEEEEECCCCSCCS------TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ------------------hhcCCCEEEEcCCccccc------hHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 246899999986332111 11111 1367888999999999999866543
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.51 E-value=2.3e-07 Score=92.15 Aligned_cols=97 Identities=23% Similarity=0.341 Sum_probs=74.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..|.+.. .+|++||+++.+++.|++.+. ...+++++++|+..-..+
T Consensus 69 ~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~--~~~nv~~~~~d~~~g~~~------------- 131 (224)
T d1vbfa_ 69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLS--YYNNIKLILGDGTLGYEE------------- 131 (224)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHT--TCSSEEEEESCGGGCCGG-------------
T ss_pred cccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHh--cccccccccCchhhcchh-------------
Confidence 456789999999999999998875 489999999999999999875 346899999999653222
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|++..-- +.+ ...+.+.|+|||.||+-+
T Consensus 132 --------------------~~pfD~Iiv~~a~-----------~~i-----p~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 132 --------------------EKPYDRVVVWATA-----------PTL-----LCKPYEQLKEGGIMILPI 165 (224)
T ss_dssp --------------------GCCEEEEEESSBB-----------SSC-----CHHHHHTEEEEEEEEEEE
T ss_pred --------------------hhhHHHHHhhcch-----------hhh-----hHHHHHhcCCCCEEEEEE
Confidence 2569999994311 111 134557899999999865
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.50 E-value=1.7e-07 Score=94.43 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=80.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
....+|||||||+|.++..++++ +..+++..|..+ +++. .....+++++.+|+.+ +.+ ..|+++...+||
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~-----~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh 150 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIEN-----APPLSGIEHVGGDMFA-SVP--QGDAMILKAVCH 150 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTT-----CCCCTTEEEEECCTTT-CCC--CEEEEEEESSGG
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhhc-----cCCCCCeEEecCCccc-ccc--cceEEEEehhhh
Confidence 34679999999999999999887 435899999844 4431 1234689999999976 344 459999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
...+.+ ..++|+++++.|+|||++++.+..
T Consensus 151 ~~~de~-----~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 151 NWSDEK-----CIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hCCHHH-----HHHHHHHHHHHcCCCcEEEEEEEE
Confidence 987655 779999999999999999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.49 E-value=5.3e-08 Score=98.48 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=76.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
.+..+||+||+|+|.....+.... ..+|++||+++.+++.|++.. ......++.++++|+..- ..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~--~~----------- 88 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR--HM----------- 88 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS--CC-----------
T ss_pred CCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhh--cc-----------
Confidence 455789999999996655555553 347999999999999999776 333456799999997431 00
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc----HHHHHHHHHccCCCcEEEEEec
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.....||+|++-. +- ...+-+ ..+|+.+.+.|+|||+|++.+.
T Consensus 89 -------------------~~~~~fD~V~~~~-~l---------~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 89 -------------------DLGKEFDVISSQF-SF---------HYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp -------------------CCSSCEEEEEEES-CG---------GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -------------------cccccceEEEEcc-ee---------eecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 1136799998721 11 111111 4689999999999999998764
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.48 E-value=1e-07 Score=94.26 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=81.5
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC---
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM--- 128 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l--- 128 (771)
.|..++.. ....+|||+|||+|..+..|++. + .++|+++|+++.+++.+++.....+ .+++++.+|..+.
T Consensus 47 lL~~lv~~---~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~ 123 (214)
T d2cl5a1 47 IMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ 123 (214)
T ss_dssp HHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred HHHHHHHh---hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccc
Confidence 44444433 24579999999999999999986 2 3599999999999998877665444 5699999998764
Q ss_pred ---CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 129 ---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 129 ---~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.+..++||+|+..+.-... .....+.+..++|+|||++++-+
T Consensus 124 l~~~~~~~~~D~ifiD~~~~~~--------~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 124 LKKKYDVDTLDMVFLDHWKDRY--------LPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp HHHHSCCCCEEEEEECSCGGGH--------HHHHHHHHHTTCEEEEEEEEESC
T ss_pred hhhcccccccceeeeccccccc--------ccHHHHHHHhCccCCCcEEEEeC
Confidence 2445789999965322221 12345777889999999877644
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.47 E-value=1.6e-07 Score=93.57 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=74.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+.+||+||+|+|.++..|... +.+|++||+++.+++.|++.+. + .++.+|+.+. .
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~----~--~~~~~~~~~l----~----------- 97 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV----K--NVVEAKAEDL----P----------- 97 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC----S--CEEECCTTSC----C-----------
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccc----c--cccccccccc----c-----------
Confidence 35578999999999999999876 3689999999999999999753 1 3566766442 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE--eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILII--DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~--D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
.++.+||+|+. ++..- + + -...+|+.+.+.|+|||+|++.+..
T Consensus 98 ------------------~~~~~fD~ii~~~~~~~~-----~----~--d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 98 ------------------FPSGAFEAVLALGDVLSY-----V----E--NKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp ------------------SCTTCEEEEEECSSHHHH-----C----S--CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ------------------cccccccceeeecchhhh-----h----h--hHHHHHHHHHhhcCcCcEEEEEECC
Confidence 12468999986 11110 0 0 1267899999999999999998743
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.45 E-value=2.9e-07 Score=90.74 Aligned_cols=125 Identities=16% Similarity=0.230 Sum_probs=86.8
Q ss_pred eecC-CccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC
Q 004164 508 KVYH-GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (771)
Q Consensus 508 ~vd~-~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg 586 (771)
.++. .++..||..+++.-.+= ..+..+||+||+|+|.++..|..... .+|++||+|+.+++.|++.+.
T Consensus 54 ~i~~g~~is~P~~~a~ml~~L~----------l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~ 122 (215)
T d1jg1a_ 54 PIPAGQTVSAPHMVAIMLEIAN----------LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLE 122 (215)
T ss_dssp ECSTTCEECCHHHHHHHHHHHT----------CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhHHHHHHhhc----------cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHH
Confidence 3444 36677886666533221 14567999999999999998888754 579999999999999998762
Q ss_pred CCCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc
Q 004164 587 FTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF 666 (771)
Q Consensus 587 ~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f 666 (771)
-..-+++.++.+|+.+-... ...||+|++...-. ..|.
T Consensus 123 ~~g~~nv~~~~gd~~~g~~~---------------------------------~~pfD~Iiv~~a~~-------~ip~-- 160 (215)
T d1jg1a_ 123 RAGVKNVHVILGDGSKGFPP---------------------------------KAPYDVIIVTAGAP-------KIPE-- 160 (215)
T ss_dssp HTTCCSEEEEESCGGGCCGG---------------------------------GCCEEEEEECSBBS-------SCCH--
T ss_pred HcCCceeEEEECccccCCcc---------------------------------cCcceeEEeecccc-------cCCH--
Confidence 11236799999999753211 25799999943221 1222
Q ss_pred ccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 667 VEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 667 ~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.+.+.|++||.+++-+...
T Consensus 161 -------~l~~qL~~gGrLv~pv~~~ 179 (215)
T d1jg1a_ 161 -------PLIEQLKIGGKLIIPVGSY 179 (215)
T ss_dssp -------HHHHTEEEEEEEEEEECSS
T ss_pred -------HHHHhcCCCCEEEEEEccC
Confidence 2456799999999876433
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.45 E-value=2.1e-07 Score=89.49 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=86.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (771)
..+++.+..++... ..+.+|||++||+|.++.+.+.+|..+|+++|.++.+++.+++.....+ .+++++++|+.+.
T Consensus 26 ~~vrealFn~l~~~--~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~ 103 (182)
T d2fhpa1 26 DKVKESIFNMIGPY--FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA 103 (182)
T ss_dssp HHHHHHHHHHHCSC--CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh
Confidence 34556666676531 3678999999999999999999999899999999999997766543322 4688999998763
Q ss_pred ----CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHH--ccccCeEEEEEE
Q 004164 129 ----QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLT 178 (771)
Q Consensus 129 ----~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~r--vLkpGG~~ii~~ 178 (771)
.-...+||+|+..-.... ......+..+.. +|+++|.+++..
T Consensus 104 l~~~~~~~~~fDlIflDPPY~~--------~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 104 LEQFYEEKLQFDLVLLDPPYAK--------QEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHHHTTCCEEEEEECCCGGG--------CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhhcccCCCcceEEechhhhh--------hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 124568999996443221 114567777754 799999887654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.43 E-value=5.2e-07 Score=93.14 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=82.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|+++.++.+.++ .+|++|++++.-++.|++.. |+ ..++.+...|....
T Consensus 60 ~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l--~~~v~~~~~d~~~~------------- 123 (291)
T d1kpia_ 60 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWEEF------------- 123 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCC--SSCEEEEECCGGGC-------------
T ss_pred CCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhcc--chhhhhhhhccccc-------------
Confidence 5678999999999999999998876 59999999999999998876 54 56899988886321
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcC----cccHHHHHHHHHccCCCcEEEEEecc
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAAD----FVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~~s~d~~~g~s~pp~~----f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
+.+||.|+. ....- |. ++.. =.-+.||+.+.+.|+|||.+++..++
T Consensus 124 -----------------------~~~fD~i~sie~~eH-----~~-~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 124 -----------------------DEPVDRIVSLGAFEH-----FA-DGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp -----------------------CCCCSEEEEESCGGG-----TT-CCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred -----------------------ccccceEeechhHHh-----cc-hhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 267999985 11111 10 0000 01268999999999999999998877
Q ss_pred CC
Q 004164 692 RS 693 (771)
Q Consensus 692 ~~ 693 (771)
..
T Consensus 175 ~~ 176 (291)
T d1kpia_ 175 IP 176 (291)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=3e-07 Score=91.47 Aligned_cols=111 Identities=7% Similarity=0.034 Sum_probs=81.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-----------------CCCCeeEEEcchHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------------QDKSLKVHITDGIK 602 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-----------------~~~r~~v~i~Dg~~ 602 (771)
....+||++|+|.|..+.+|.... .+|++||++|.+++.|++..+.. ...+++++++|..+
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRG--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 456799999999999999998863 58999999999999998876431 24578899998876
Q ss_pred HHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCC
Q 004164 603 FVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ 682 (771)
Q Consensus 603 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~ 682 (771)
..... ...||+|+. ......+ +|. .-..+++.+.++|+||
T Consensus 122 l~~~~--------------------------------~~~fd~i~~----~~~l~~~--~~~--~r~~~~~~~~~~Lkpg 161 (229)
T d2bzga1 122 LPRTN--------------------------------IGKFDMIWD----RGALVAI--NPG--DRKCYADTMFSLLGKK 161 (229)
T ss_dssp GGGSC--------------------------------CCCEEEEEE----SSSTTTS--CGG--GHHHHHHHHHHTEEEE
T ss_pred ccccc--------------------------------cCceeEEEE----EEEEEec--cch--hhHHHHHHHHhhcCCc
Confidence 53221 367999976 1111111 222 2477999999999999
Q ss_pred cEEEEEeccC
Q 004164 683 GLFIVNLVSR 692 (771)
Q Consensus 683 Gilv~Nl~~~ 692 (771)
|.+++.....
T Consensus 162 G~~~l~~~~~ 171 (229)
T d2bzga1 162 FQYLLCVLSY 171 (229)
T ss_dssp EEEEEEEEEC
T ss_pred ceEEEEEccc
Confidence 9877665543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.42 E-value=4.1e-07 Score=93.65 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=82.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|.|.++.++.+.++ .+|++|.+++.-++.|++.. .....+++++..+|..++
T Consensus 61 ~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--------------- 124 (285)
T d1kpga_ 61 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------------- 124 (285)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------------
T ss_pred CCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc---------------
Confidence 5668999999999999999998875 69999999999999998875 222367899999997543
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
+..||.|+. + +|.+.-..-.-..|++.+.+.|+|||.+++..++
T Consensus 125 ---------------------~~~fD~i~s-i-------~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 125 ---------------------DEPVDRIVS-I-------GAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp ---------------------CCCCSEEEE-E-------SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ---------------------cccccceee-e-------hhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 256998876 1 2221111112368999999999999999988765
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=3.7e-07 Score=90.31 Aligned_cols=102 Identities=15% Similarity=0.059 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-----CCCCCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-----FMDETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-----~~~~sFDl 137 (771)
...+|||||||+|..+.++++. + .++|+.+|.++...+.+++.....+ .+++++.+|+.+. + ...++||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 5689999999999999999986 2 3699999999999998887765544 5799999997653 1 34578999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|+..+.=. ....++..+.++|+|||.+++-..
T Consensus 139 ifiD~dk~----------~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 139 AVVDADKE----------NCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp EEECSCST----------THHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEeCCHH----------HHHHHHHHHHHHhcCCcEEEEeCC
Confidence 99632111 156889999999999999988654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.40 E-value=2.2e-06 Score=89.74 Aligned_cols=159 Identities=17% Similarity=0.184 Sum_probs=101.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc----C--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEe
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA----G--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILD 140 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~----g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~ 140 (771)
.++.+|||+|||+|.+...+++. + ..+++|+|+++.++..++..+........+...|.... ....+||+|++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~ 194 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVIS 194 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-ccccccccccc
Confidence 56789999999999999887643 2 23799999999999877666555556777888876654 34578999999
Q ss_pred ccccccccCccc-----------chHHHHHHHHHHHHccccCeEEEEEEcCcchhh----cchhhhh-ccCcEEEEeecC
Q 004164 141 KGGLDALMEPEL-----------GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL----GLLFPKF-RFGWKMSVHAIP 204 (771)
Q Consensus 141 ~~~l~~l~~~~~-----------~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~----~~l~~~~-~~~w~~~~~~i~ 204 (771)
+-.+......+. .......++..+.+.|+|||+++++.... .+. ..+.... ..++-..+..++
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~-~l~~~~~~~lR~~L~~~~~i~~ii~lp 273 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA-MFGTSDFAKVDKFIKKNGHIEGIIKLP 273 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG-GGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc-cccCchhHHHHHHHHhCCcEEEEEECC
Confidence 876643222110 00123457889999999999988876541 111 1222222 223444566665
Q ss_pred CCCCCCCCCccEEEEEEEcCCcc
Q 004164 205 QKSSSEPSLQTFMVVADKENSSV 227 (771)
Q Consensus 205 ~~~~~~~~l~~f~~v~~k~~~~~ 227 (771)
...=........+++.+|.+...
T Consensus 274 ~~~F~~~~~~t~ilvl~K~~~~~ 296 (328)
T d2f8la1 274 ETLFKSEQARKSILILEKADVDV 296 (328)
T ss_dssp GGGSCC-CCCEEEEEEEECCTTC
T ss_pred ccccCCCCCCeEEEEEECCCCCc
Confidence 32212345556777777765433
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=6.3e-07 Score=91.67 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=86.0
Q ss_pred CCCCcEEEEeccccHHHHHHH----HhCCCC--cEEEEEcCHHHHHHHHhhcCC-C--CCCCeeEEEcchHHHHHhhccC
Q 004164 540 GKSVKAVVIGLGAGLLPMFLH----ECMPFV--GIEAVELDLTMLNLAEDYFGF-T--QDKSLKVHITDGIKFVREMKSS 610 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~----~~~p~~--~i~~VEiD~~v~~vA~~~Fg~-~--~~~r~~v~i~Dg~~~l~~~~~~ 610 (771)
....+||.||+|+|.++..|. ..++.. .+++||+++.+++.|++.+.- . ..-++.++..++.++......
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 117 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE- 117 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT-
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc-
Confidence 344589999999998766554 445543 679999999999999998732 2 222456677777777554331
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 611 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.....+||+|+. ......+ +. -..+|+.+++.|+|||.+++.+.
T Consensus 118 --------------------------~~~~~~fD~I~~----~~~l~~~----~d--~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 118 --------------------------KKELQKWDFIHM----IQMLYYV----KD--IPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp --------------------------SSSCCCEEEEEE----ESCGGGC----SC--HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --------------------------cCCCCceeEEEE----ccceecC----CC--HHHHHHHHHhhCCCCCEEEEEEe
Confidence 123578999987 1111111 11 15899999999999999998876
Q ss_pred cCChhHHHHHHHHHHHhc
Q 004164 691 SRSQATKDMVISRMKMVF 708 (771)
Q Consensus 691 ~~~~~~~~~v~~~l~~vF 708 (771)
...... ..+...+...|
T Consensus 162 ~~~~~~-~~l~~~~~~~~ 178 (280)
T d1jqea_ 162 SGSSGW-DKLWKKYGSRF 178 (280)
T ss_dssp CTTSHH-HHHHHHHGGGS
T ss_pred cCcchH-HHHHHHHHHhc
Confidence 654432 23344444444
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=3e-07 Score=88.48 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=79.2
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..++|++++|+|++...+..+.. .+|+.||+|+..++++++.+........+++.+|+++|+...
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~-------------- 108 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK-------------- 108 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--------------
T ss_pred hhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccccc--------------
Confidence 36899999999999886666543 389999999999999998863323356899999999998653
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHH--ccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~--~L~~~Gilv~Nl 689 (771)
..+||+|++|-- -..-.-...+..+.+ .|+++|++++-.
T Consensus 109 ------------------~~~fDlIf~DPP-----------Y~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 109 ------------------GTPHNIVFVDPP-----------FRRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp ------------------CCCEEEEEECCS-----------SSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ------------------ccccCEEEEcCc-----------cccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 267999999631 012234667777766 589999999753
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.37 E-value=4.3e-07 Score=92.09 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=77.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|.|.++..|.+.+|+.+++++|+ |.+++.|++++. ....+|+.++.+|..+. .
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~---~------------ 144 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---L------------ 144 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------------
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc---c------------
Confidence 456899999999999999999999999999998 889999998871 12357899998886431 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~N 688 (771)
...||+|++ ... -.++-+ ..+|+++++.|+|||.|++.
T Consensus 145 --------------------p~~~D~v~~----~~v-------Lh~~~d~~~~~lL~~i~~~LkpgG~llI~ 185 (256)
T d1qzza2 145 --------------------PVTADVVLL----SFV-------LLNWSDEDALTILRGCVRALEPGGRLLVL 185 (256)
T ss_dssp --------------------SCCEEEEEE----ESC-------GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------cccchhhhc----ccc-------ccccCcHHHHHHHHHHHhhcCCcceeEEE
Confidence 245999987 110 111222 46799999999999977764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.37 E-value=5.5e-07 Score=89.31 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=83.1
Q ss_pred ccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhC------CCCcEEEEEcCHHHHHHHHhhcC
Q 004164 513 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECM------PFVGIEAVELDLTMLNLAEDYFG 586 (771)
Q Consensus 513 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~------p~~~i~~VEiD~~v~~vA~~~Fg 586 (771)
++..|+..+.+.-+... ...+..+||+||+|+|.++..|.+.. +..+|++||+++.+++.|++...
T Consensus 60 ~is~P~~~a~~l~~L~~--------~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~ 131 (223)
T d1r18a_ 60 TISAPHMHAFALEYLRD--------HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLN 131 (223)
T ss_dssp EECCHHHHHHHHHHTTT--------TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred eeehhhhHHHHHHHHhh--------ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhh
Confidence 56667766655432210 01355799999999999888887753 34589999999999999988752
Q ss_pred ---C--CCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc
Q 004164 587 ---F--TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC 661 (771)
Q Consensus 587 ---~--~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~ 661 (771)
+ ..-.++.++.+||.+-... ...||+|+++....+
T Consensus 132 ~~~~~~~~~~nv~~~~~d~~~~~~~---------------------------------~~~fD~Iiv~~a~~~------- 171 (223)
T d1r18a_ 132 TDDRSMLDSGQLLIVEGDGRKGYPP---------------------------------NAPYNAIHVGAAAPD------- 171 (223)
T ss_dssp HHHHHHHHHTSEEEEESCGGGCCGG---------------------------------GCSEEEEEECSCBSS-------
T ss_pred hcchhhcCccEEEEEeccccccccc---------------------------------ccceeeEEEEeechh-------
Confidence 1 0125799999999753211 257999999543221
Q ss_pred CCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 662 PAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 662 pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.| +.+.+.|++||.+|+-+.
T Consensus 172 ~p---------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 172 TP---------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp CC---------HHHHHTEEEEEEEEEEES
T ss_pred ch---------HHHHHhcCCCcEEEEEEe
Confidence 12 245788999999998664
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.36 E-value=3.8e-07 Score=87.68 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=81.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||++++|+|++......... .+|+.||.|+..++++++.+. +...++++++.+|+.++++....
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~---------- 109 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---------- 109 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH----------
T ss_pred CCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc----------
Confidence 457899999999999886666643 489999999999999999872 12345899999999999987541
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC-cccHHHHHHHHH--ccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-FVEGSFLLTVKD--ALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~-f~~~~fl~~~~~--~L~~~Gilv~Nl 689 (771)
.+.+||+|++|. |-. -.-.+.|+.+.+ .|+++|++++-.
T Consensus 110 -------------------~~~~fDlIflDP------------PY~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 110 -------------------EKLQFDLVLLDP------------PYAKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp -------------------TTCCEEEEEECC------------CGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -------------------cCCCcceEEech------------hhhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 136799999963 211 112566777654 589999999754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.34 E-value=6.1e-07 Score=87.34 Aligned_cols=97 Identities=21% Similarity=0.225 Sum_probs=71.8
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||+||+|+|.++..+. ++++||++|.+++.|++. .++++.+|+.+. .
T Consensus 37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l----~------------- 86 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-------GVFVLKGTAENL----P------------- 86 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBC----C-------------
T ss_pred CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-------cccccccccccc----c-------------
Confidence 4589999999998866652 578999999999999974 478999988543 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCCh
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 694 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 694 (771)
..+.+||+|+.- ....-+ +. -..+|+.+++.|+|||.+++.......
T Consensus 87 ----------------~~~~~fD~I~~~----~~l~h~----~d--~~~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 87 ----------------LKDESFDFALMV----TTICFV----DD--PERALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp ----------------SCTTCEEEEEEE----SCGGGS----SC--HHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred ----------------cccccccccccc----cccccc----cc--cccchhhhhhcCCCCceEEEEecCCcc
Confidence 124679999871 111111 11 256999999999999999998766543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.32 E-value=3.9e-07 Score=93.97 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=76.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC---CC-CCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FT-QDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg---~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||+||+|+|.++..|.... .+|++||+++.|++.|++... .. ...+..+...|.+..-....
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g--~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 125 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-------- 125 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC--------
T ss_pred CCCEEEEecCCCcHHHHHHHHcC--CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC--------
Confidence 45689999999999999888873 689999999999999998762 11 01233455555554433222
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc---cHHHHHHHHHccCCCcEEEEEecc
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~---~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
....||+|++-.++- .-+ |.+... -..+|+.+.+.|+|||+|++.+..
T Consensus 126 ----------------------~~~~fd~v~~~~~~~---~~~--~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 126 ----------------------AGDGFDAVICLGNSF---AHL--PDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp ----------------------CTTCEEEEEECSSCG---GGS--CCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ----------------------CCCCceEEEEecCch---hhc--CCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 136799998722111 111 111111 245999999999999999998754
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.31 E-value=6e-07 Score=90.33 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
...+|||||||+|.++..++++ +..+++..|..+ +++.+ ....+++++.+|+.+. . ..+|+++.+.+||.
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~-----~~~~rv~~~~gD~f~~-~--p~aD~~~l~~vLHd 150 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VVENL-----SGSNNLTYVGGDMFTS-I--PNADAVLLKYILHN 150 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTTC-----CCBTTEEEEECCTTTC-C--CCCSEEEEESCGGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HHHhC-----cccCceEEEecCcccC-C--CCCcEEEEEeeccc
Confidence 3468999999999999999887 445899999843 44322 2347899999999863 3 35899999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccC---eEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSG---GKFVCLTLA 180 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpG---G~~ii~~~~ 180 (771)
..+.+ ..++|+++++.|+|| |++++++..
T Consensus 151 w~d~~-----~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 151 WTDKD-----CLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp SCHHH-----HHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred CChHH-----HHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 87655 779999999999998 788888753
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.30 E-value=1e-06 Score=88.05 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=68.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~ 132 (771)
+...+.+.+. ..++++|||||||+|.+|..|++.+. +|+++|+++.+++.++++. ...++++++.+|+.+++++.
T Consensus 9 i~~~iv~~~~---~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~-~~~~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 9 NIDKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKL-VDHDNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHT-TTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHHHhcC---CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHh-hcccchhhhhhhhhhccccc
Confidence 3344444444 36899999999999999999999876 9999999999999887766 34579999999999988765
Q ss_pred CCccEEEeccccccc
Q 004164 133 ETFDVILDKGGLDAL 147 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l 147 (771)
.....|+++ .-|++
T Consensus 84 ~~~~~vv~N-LPYnI 97 (235)
T d1qama_ 84 NQSYKIFGN-IPYNI 97 (235)
T ss_dssp SCCCEEEEE-CCGGG
T ss_pred cccceeeee-ehhhh
Confidence 554455543 33444
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.30 E-value=3e-06 Score=86.17 Aligned_cols=148 Identities=12% Similarity=0.126 Sum_probs=97.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+++++|+|+|+++..++. +|+.+|++||++|..+++|++.. ++ .+++.++.+|-.+.+...
T Consensus 110 ~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~--~~~~~i~~~~~~~~~~~~---------- 176 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEFLEPFKEK---------- 176 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESSTTGGGGGG----------
T ss_pred cccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCC--CceeEEeecccccccccc----------
Confidence 456899999999999988875 58899999999999999999875 43 568999999987765432
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC-----CcCCcCccc----HHHHH-HHHHccCCCcEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-----TCPAADFVE----GSFLL-TVKDALSEQGLFIV 687 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~-----s~pp~~f~~----~~fl~-~~~~~L~~~Gilv~ 687 (771)
..+||+|+...---.....+ .=|..+++. .+|++ -+++.|+|+|++++
T Consensus 177 ----------------------~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~ 234 (271)
T d1nv8a_ 177 ----------------------FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 234 (271)
T ss_dssp ----------------------TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred ----------------------cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE
Confidence 25799999843100000000 001111111 23443 36778999999998
Q ss_pred EeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEecCC
Q 004164 688 NLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 730 (771)
Q Consensus 688 Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~ 730 (771)
-+-. ++ .+.+++.|.++-.++--.+..+++++.+..
T Consensus 235 Eig~-~Q------~~~v~~l~~~~g~~kDl~g~~R~~~~~k~~ 270 (271)
T d1nv8a_ 235 EIGE-DQ------VEELKKIVSDTVFLKDSAGKYRFLLLNRRS 270 (271)
T ss_dssp ECCT-TC------HHHHTTTSTTCEEEECTTSSEEEEEEECCC
T ss_pred EECH-HH------HHHHHHHHHhCCEEeccCCCcEEEEEEEcC
Confidence 7732 22 233456677654444334567888887754
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.27 E-value=2e-07 Score=94.78 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=80.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||++|+|.|.++..+... +..+|++||++|..++.|++...+. -+++++++.+|+.++..
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~------------- 171 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG------------- 171 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------------
T ss_pred CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-------------
Confidence 34678999999999999888877 4469999999999999999887321 25789999999987622
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
...||.|+++. |+ ...+||..+.+.|++||++.+....
T Consensus 172 ---------------------~~~~D~Ii~~~------------p~--~~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 172 ---------------------ENIADRILMGY------------VV--RTHEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp ---------------------CSCEEEEEECC------------CS--SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEEEECC------------CC--chHHHHHHHHhhcCCCCEEEEEecc
Confidence 25699999842 11 2367888999999999999765443
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.1e-06 Score=91.43 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=75.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
+..+||+||+|+|.+++++++..+ .+|++||+++.+..+++..-.....++++++.+|..+. .
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l----~------------ 97 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV----H------------ 97 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS----C------------
T ss_pred CcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh----c------------
Confidence 456899999999999999998864 48999999999876544332222367899999987664 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
....+||+|+.+..... ....-.-+.++....+.|+|||.++.
T Consensus 98 -----------------~~~~~~D~Ivse~~~~~-------~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 98 -----------------LPVEKVDVIISEWMGYF-------LLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp -----------------CSCSCEEEEEECCCBTT-------BTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred -----------------CccccceEEEEeeeeee-------cccccccHHHHHHHHhcCCCCcEEec
Confidence 12368999998543221 12222335677778889999999883
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.27 E-value=7.8e-07 Score=84.53 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=72.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||++|+|+|++...+.... .++++||+|+.++++|++.+ ++ + .+++..|+-.|+.....
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~--~--~~v~~~~~d~~~~~~~~------- 106 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGL--G--ARVVALPVEVFLPEAKA------- 106 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTC--C--CEEECSCHHHHHHHHHH-------
T ss_pred cCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhcc--c--cceeeeehhcccccccc-------
Confidence 345689999999999988766653 58999999999999999886 44 2 36777788877765431
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHH--HHccCCCcEEEEEe
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTV--KDALSEQGLFIVNL 689 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~--~~~L~~~Gilv~Nl 689 (771)
...+||+|++|. |-..-..+.+..+ +..|+|||++++--
T Consensus 107 ----------------------~~~~fD~If~DP------------PY~~~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 107 ----------------------QGERFTVAFMAP------------PYAMDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp ----------------------TTCCEEEEEECC------------CTTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ----------------------cCCccceeEEcc------------ccccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 236799999963 1111112233333 34689999999753
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.27 E-value=6.9e-07 Score=86.48 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=85.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.....++++++|+|..+..+.+.+|+.+|.++|.||.+++.|++.+.- ...+++++.++..+.-.-...
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~-~~~r~~~~~~~f~~~~~~~~~---------- 90 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE-FSDRVSLFKVSYREADFLLKT---------- 90 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG-GTTTEEEEECCGGGHHHHHHH----------
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc-ccccccchhHHHhhHHHHHHH----------
Confidence 345689999999999999999988999999999999999999998742 256899999977654222210
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-ccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....++|.|++|+--+.. -+.-+...| ...++|..+.+.|++||.+++-.
T Consensus 91 ------------------~~~~~vdgIl~DlGvSs~--Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 91 ------------------LGIEKVDGILMDLGVSTY--QLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp ------------------TTCSCEEEEEEECSCCHH--HHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred ------------------cCCCCcceeeeccchhHh--hhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 013679999999733210 000011122 24678999999999999998643
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.6e-06 Score=83.96 Aligned_cols=124 Identities=11% Similarity=0.063 Sum_probs=82.8
Q ss_pred HHHHHhhCCC--CCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-
Q 004164 55 DPLISLIGAP--TSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (771)
Q Consensus 55 ~~l~~~l~~~--~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l- 128 (771)
..+..++... ...+..++||+|||+|..+..|+.. ...+++|+|+|+.+++.|++...... .++.+...+....
T Consensus 46 ~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~ 125 (250)
T d2h00a1 46 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL 125 (250)
T ss_dssp HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred HHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhh
Confidence 3455554331 1234569999999999999999887 33499999999999998876654443 4577776655432
Q ss_pred -----CCCCCCccEEEeccccccccCccc---------------------------c-hHHHHHHHHHHHHccccCeEEE
Q 004164 129 -----QFMDETFDVILDKGGLDALMEPEL---------------------------G-HKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 129 -----~~~~~sFDlVi~~~~l~~l~~~~~---------------------------~-~~~~~~~l~~i~rvLkpGG~~i 175 (771)
...+++||+|+++-..+.-..... + ...+.+++++....++..|.|.
T Consensus 126 ~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t 205 (250)
T d2h00a1 126 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYS 205 (250)
T ss_dssp TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEE
T ss_pred hhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEE
Confidence 134578999999877764221100 0 0126778888888999988876
Q ss_pred EEE
Q 004164 176 CLT 178 (771)
Q Consensus 176 i~~ 178 (771)
+.-
T Consensus 206 ~~i 208 (250)
T d2h00a1 206 CML 208 (250)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.22 E-value=2.1e-06 Score=90.03 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=75.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
+..+||+||+|+|.|++++.+... .+|++||.++ +++.|++... ....++++++.+|..+. .
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l----~----------- 100 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDV----H----------- 100 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS----C-----------
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhc----c-----------
Confidence 457899999999999999988753 4899999998 5567766541 11367899999987653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
....+||+|+......- ....-.-..++..+.+.|+|||+++
T Consensus 101 ------------------~~~~~~D~i~se~~~~~-------~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 101 ------------------LPFPKVDIIISEWMGYF-------LLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ------------------CSSSCEEEEEECCCBTT-------BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ------------------CcccceeEEEEEeccee-------eccchhHHHHHHHHHhccCCCeEEE
Confidence 12468999998653321 1222234678888899999999987
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.20 E-value=1.4e-06 Score=91.00 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=74.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
+..+||+||+|+|.+++++.+..+ .+|++||+++.+.. |++.. ++ .++++++.+|..+. .
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~-a~~~~~~n~~--~~~v~~~~~~~~~~----~--------- 95 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDY-AVKIVKANKL--DHVVTIIKGKVEEV----E--------- 95 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHH-HHHHHHHTTC--TTTEEEEESCTTTC----C---------
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhh-hhhHHHHhCC--ccccceEeccHHHc----c---------
Confidence 346799999999999999998754 38999999997654 44433 43 57899999988664 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
....++|+|+.+..... ....-.-+.++..+.+.|+|||.++
T Consensus 96 --------------------~~~~~~D~ivs~~~~~~-------l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 96 --------------------LPVEKVDIIISEWMGYC-------LFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp --------------------CSSSCEEEEEECCCBBT-------BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------cccceeEEEeeeeeeee-------eccHHHHHHHHHHHHhcCCCCeEEE
Confidence 12367999998643221 1222233788999999999999987
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.13 E-value=2.6e-06 Score=84.52 Aligned_cols=101 Identities=15% Similarity=0.018 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C------CCCCCcc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q------FMDETFD 136 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~------~~~~sFD 136 (771)
...+|||+|+++|..+..+++. + .++|+.+|.++...+.+++...+.+ .+++++.+|+.+. + ...++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 4689999999999999999976 2 3699999999999998877776554 4699999998653 1 1356899
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+|+.-+.=. ....+++.+.++|+|||.+++-.
T Consensus 139 ~iFiDa~k~----------~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 139 FIFVDADKD----------NYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEEECSCST----------THHHHHHHHHHHBCTTCCEEEET
T ss_pred EEEeccchh----------hhHHHHHHHHhhcCCCcEEEEcc
Confidence 999533111 15689999999999999988864
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.12 E-value=2.7e-06 Score=87.01 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhh-----------cCCCCcEEEEeecCCCCCCCCCc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-----------RDRSDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~-----------~~~~~i~~~~~D~~~l~~~~~sF 135 (771)
+...+||.+|+|.|..+..+.+.+..+|+.||+++.+++.+++-.. ...++++++.+|+...--.+++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 3568999999999999999888877799999999999997764331 13478999999987652245789
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
|+|+...+-. ..... .-.-..+++.+++.|+|||++++-.
T Consensus 151 DvIi~D~~~~-~~~~~--~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 151 DVIIADSTDP-VGPAK--VLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEECCCC-C-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEeCCCC-CCCcc--cccCHHHHHhhHhhcCCCceEEEec
Confidence 9999643221 11100 0002478999999999999998765
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=7.8e-06 Score=78.05 Aligned_cols=141 Identities=17% Similarity=0.188 Sum_probs=96.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (771)
+++.+||||||++|.++..+.+. ....++++|+.+ + ...+++.++.+|+.+.. ...+.||
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-----~-----~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----M-----DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-----C-----CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-----c-----cccCCceEeecccccchhhhhhhhhccCccee
Confidence 57899999999999999998875 446899999876 2 23467899999998742 3457899
Q ss_pred EEEeccccccccCcccc----hHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCCCCCCCCC
Q 004164 137 VILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPS 212 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~----~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~ 212 (771)
+|++-++.+.-...... ..+....+.-+.++|++||.|++=.+.... ...+.......+.. +..+-..++...+
T Consensus 91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~-~~~l~~~l~~~F~~-V~~~KP~aSR~~S 168 (180)
T d1ej0a_ 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG-FDEYLREIRSLFTK-VKVRKPDSSRARS 168 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT-HHHHHHHHHHHEEE-EEEECCTTSCTTC
T ss_pred EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc-HHHHHHHHHhhcCE-EEEECCCCcccCC
Confidence 99998887754432211 124778888889999999999998886544 23444444433322 2222223334556
Q ss_pred CccEEEE
Q 004164 213 LQTFMVV 219 (771)
Q Consensus 213 l~~f~~v 219 (771)
-+.|++-
T Consensus 169 sE~Ylv~ 175 (180)
T d1ej0a_ 169 REVYIVA 175 (180)
T ss_dssp CEEEEEE
T ss_pred ceEEEEE
Confidence 6666653
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.11 E-value=3.7e-06 Score=87.37 Aligned_cols=110 Identities=19% Similarity=0.221 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhh------cCCCCcEEEEeecCCC-CCCCCCccEEE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV------RDRSDMRWRVMDMTSM-QFMDETFDVIL 139 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~------~~~~~i~~~~~D~~~l-~~~~~sFDlVi 139 (771)
...+||.||+|.|..+..+.+. +..+|++||+++.+++.+++.+. ...++++++.+|+.+. .-.+++||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 5679999999999999999887 45699999999999997766542 2347899999999875 23457899999
Q ss_pred eccccccccCcccchHH-HHHHHHHHHHccccCeEEEEEE
Q 004164 140 DKGGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~-~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
...+ +..........+ -..+++.+++.|+|||++++-.
T Consensus 157 ~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 157 IDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 5432 111100000001 2478999999999999998754
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.11 E-value=2.3e-06 Score=85.81 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
...+|||||||+|.++..+++. +..++++.|..+. ++ .....+++.+...|+.+ +.+. .|+++....+|.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-----~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~ 151 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-----DAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHD 151 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-----TCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTT
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-----hcccCCceEEecccccc-cCCC--cceEEEEEEeec
Confidence 3578999999999999999987 3358999999763 32 12344789999999976 3443 577888888888
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
..+.+ ...+|+++++.|+|||++++.+..
T Consensus 152 ~~d~~-----~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 152 WSDEH-----CLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp SCHHH-----HHHHHHHHHHHCCSSSCEEEEECE
T ss_pred CCHHH-----HHHHHHHHHHhcCCCceEEEEEEE
Confidence 76544 779999999999999999998754
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.08 E-value=4.9e-07 Score=90.93 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=71.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
..+...+.+.+.. .++++|||||||+|.+|..|++.+. +|++||+++.+++.+++++ ...++++++++|+.++++
T Consensus 15 ~~ii~kIv~~~~~---~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~-~~~~n~~ii~~D~l~~~~ 89 (245)
T d1yuba_ 15 EKVLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKL-KLNTRVTLIHQDILQFQF 89 (245)
T ss_dssp TTTHHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTT-TTCSEEEECCSCCTTTTC
T ss_pred HHHHHHHHHhcCC---CCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhh-hhccchhhhhhhhhcccc
Confidence 3445556666654 6789999999999999999999876 9999999998887665444 234689999999999998
Q ss_pred CCCCccEEEecccccccc
Q 004164 131 MDETFDVILDKGGLDALM 148 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~ 148 (771)
+...++.|+++-. +++.
T Consensus 90 ~~~~~~~vv~NLP-Y~Is 106 (245)
T d1yuba_ 90 PNKQRYKIVGNIP-YHLS 106 (245)
T ss_dssp CCSSEEEEEEECC-SSSC
T ss_pred ccceeeeEeeeee-hhhh
Confidence 8777777776554 4443
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.06 E-value=9e-06 Score=77.68 Aligned_cols=120 Identities=14% Similarity=0.216 Sum_probs=91.0
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---- 129 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~---- 129 (771)
...+..++.. .++..++|..||.|..+..+.+.+. +|+|+|..+.+++.+.++ ..+++.++..+..++.
T Consensus 7 l~Evl~~l~~---~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~---~~~~~~~~~~~f~~~~~~l~ 79 (182)
T d1wg8a2 7 YQEALDLLAV---RPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGL---HLPGLTVVQGNFRHLKRHLA 79 (182)
T ss_dssp HHHHHHHHTC---CTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHT---CCTTEEEEESCGGGHHHHHH
T ss_pred HHHHHHhcCC---CCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhc---cccceeEeehHHHHHHHHHH
Confidence 3345566654 6899999999999999999998854 999999999999877654 3468999999888763
Q ss_pred -CCCCCccEEEeccccc--cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 130 -FMDETFDVILDKGGLD--ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 130 -~~~~sFDlVi~~~~l~--~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+..+.+|.|+..-.+. .+.++..+.......|.....+|++||+++++++.
T Consensus 80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 4457899888543332 22233333344677899999999999999999986
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.04 E-value=9.7e-06 Score=77.56 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=75.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCC---CCCCCCccEEEec
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSM---QFMDETFDVILDK 141 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~~D~~~l---~~~~~sFDlVi~~ 141 (771)
.+.++||+-||+|.++.+.+.+|..+++.||.+..+++.+++.....+ ....+...|..+. .....+||+|+..
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 467999999999999999999999999999999999987765544332 2355566665432 3345679999964
Q ss_pred cccccccCcccchHHHHHHHHHHHH--ccccCeEEEEEEc
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTL 179 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~r--vLkpGG~~ii~~~ 179 (771)
-... .......+..+.. +|+++|.+++...
T Consensus 123 PPY~--------~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPFH--------FNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCSS--------SCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhHh--------hhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 3322 2235677777754 7999998888654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.92 E-value=1.2e-05 Score=78.57 Aligned_cols=118 Identities=24% Similarity=0.311 Sum_probs=82.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
..+...+.+++.. .++.+|||+|||+|.+...+.+. + ..+++|+|+++.++. .......+++|....
T Consensus 5 ~~i~~~m~~l~~~---~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~--------~~~~~~~~~~~~~~~ 73 (223)
T d2ih2a1 5 PEVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD--------LPPWAEGILADFLLW 73 (223)
T ss_dssp HHHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC--------CCTTEEEEESCGGGC
T ss_pred HHHHHHHHHhcCC---CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh--------hcccceeeeeehhcc
Confidence 4667778888765 67889999999999998888765 2 357999999985442 123456778887765
Q ss_pred CCCCCCccEEEeccccccccCcccc----------------------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 129 QFMDETFDVILDKGGLDALMEPELG----------------------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~----------------------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
. ....||+|+++............ ......++....+.|++||+++++...
T Consensus 74 ~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 74 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred c-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 5 34789999988665432211100 012346678889999999999888743
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.92 E-value=1.9e-05 Score=80.25 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhh-----cCCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~-----~~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
...+||.||.|.|..+.++.+. +..+|+.+|+++.+++.+++-.. ...++++++..|.... .-.+++||+|+.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 5689999999999999999987 56799999999999997765431 2347899999998764 234578999996
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..+-..-.... -.-..+++.+++.|+|||+++.-.
T Consensus 155 D~~~p~~~~~~---L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 155 DSTEPVGPAVN---LFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp SCSSCCSCCCC---CSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchh---hccHHHHHHHHhhcCCCceEEEec
Confidence 53221111000 002488999999999999998765
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=1.5e-05 Score=81.92 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
...+||.||.|.|..+.++.+. +..+|+++|+++.+++.+++-... ..++++++..|+... .-.+++||+|+.
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 4579999999999999999887 457899999999999977654321 347899999999765 334578999996
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
..+-....... .-.-..+++.+++.|+|||++++-..+
T Consensus 169 D~~dp~~~~~~--~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 169 DSTDPTAGQGG--HLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EC------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCCCcCchh--hhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 43221100000 000248899999999999999886543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.91 E-value=2.3e-05 Score=80.40 Aligned_cols=110 Identities=14% Similarity=0.235 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhh-----cCCCCcEEEEeecCCC--CCCCCCccEEE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSM--QFMDETFDVIL 139 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~-----~~~~~i~~~~~D~~~l--~~~~~sFDlVi 139 (771)
...+||-||.|.|..+.++.+. +..+|+.+|+++.+++.+++-.. ...++++++..|.... ...+++||+|+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 4579999999999999999887 55789999999999997765331 2358899999998764 23456899999
Q ss_pred eccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.-.+-. ...+. .-.-..+++.+++.|+|||++++-..+
T Consensus 160 ~D~~dp-~~~~~--~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 160 VDSSDP-IGPAK--ELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp ECCCCT-TSGGG--GGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCC-CCcch--hhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 533211 11000 001347899999999999999987543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=3.6e-05 Score=77.21 Aligned_cols=63 Identities=19% Similarity=0.099 Sum_probs=52.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIK 602 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~ 602 (771)
....++|+||+|+|+++..|....|+.+++++|||+..+++|++.... .-.+++.++..+...
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~ 123 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKT 123 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHH
Confidence 455789999999999999999999999999999999999999998721 236788888776543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=5.6e-05 Score=79.63 Aligned_cols=131 Identities=10% Similarity=0.176 Sum_probs=88.7
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC----
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM---- 128 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l---- 128 (771)
...+.+++.. .++.+|||+-||+|.++..|++.+. +|+|+|.++.+++.|++.+...+ .++.|+.+|..+.
T Consensus 201 ~~~v~~~~~~---~~~~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~ 276 (358)
T d1uwva2 201 VARALEWLDV---QPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 276 (358)
T ss_dssp HHHHHHHHTC---CTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred HHHHHHhhcc---CCCceEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh
Confidence 3345555543 5678999999999999999988754 99999999999998876655444 6899999998764
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEE
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 200 (771)
......||+|+.. .+-.+ ..+.+..+.+. +|. +++.++.....+.+.+......+|.+.-
T Consensus 277 ~~~~~~~d~vilD-------PPR~G---~~~~~~~l~~~-~~~-~ivYVSCnp~TlaRDl~~l~~~gy~l~~ 336 (358)
T d1uwva2 277 PWAKNGFDKVLLD-------PARAG---AAGVMQQIIKL-EPI-RIVYVSCNPATLARDSEALLKAGYTIAR 336 (358)
T ss_dssp GGGTTCCSEEEEC-------CCTTC---CHHHHHHHHHH-CCS-EEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhhccCceEEeC-------CCCcc---HHHHHHHHHHc-CCC-EEEEEeCCHHHHHHHHHHHHHCCCeEeE
Confidence 2334679998842 22222 33556666553 554 4555555544555555444456777654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=2.9e-05 Score=81.05 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh----------cCCCCCCCeeEEEcchHHH--HHhh
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY----------FGFTQDKSLKVHITDGIKF--VREM 607 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~----------Fg~~~~~r~~v~i~Dg~~~--l~~~ 607 (771)
.....||+||+|.|.+...+...++..++.+||+++.++++|++. +|. ...+++++.+|..+. -...
T Consensus 150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~-~~~~i~~~~gd~~~~~~~~~~ 228 (328)
T d1nw3a_ 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLERGDFLSEEWRERI 228 (328)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTC-CCCCEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccc-cCCceEEEECccccccccccc
Confidence 345689999999999999999888887899999999999999764 344 345799999998753 1111
Q ss_pred ccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 608 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
...|+|++- +-- ..+.+ ...|..+.+.|+|||.+|.
T Consensus 229 ---------------------------------~~advi~~~--~~~-------f~~~~--~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 229 ---------------------------------ANTSVIFVN--NFA-------FGPEV--DHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp ---------------------------------HHCSEEEEC--CTT-------TCHHH--HHHHHHHHTTCCTTCEEEE
T ss_pred ---------------------------------CcceEEEEc--cee-------cchHH--HHHHHHHHHhCCCCcEEEE
Confidence 235888872 210 11122 4678889999999999986
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=2.5e-05 Score=79.79 Aligned_cols=110 Identities=19% Similarity=0.297 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhh-----cCCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~-----~~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
...+||-||.|.|..+..+.+. +..+|+.+|+++.+++.+++-+. ...++++++..|+... .-..++||+|+.
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 157 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence 4579999999999999999987 56799999999999997765432 2347999999998764 234578999996
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
-.+ +-...+. .-.-..+++.+++.|+|||.+++-..+
T Consensus 158 D~~-~p~~~~~--~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 158 DSS-DPMGPAE--SLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp ECC--------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCC-CCCCccc--ccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 432 1111000 000237899999999999999987644
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.80 E-value=1.6e-05 Score=77.18 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=49.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
+..+||++|+|+|.++..+... +..+|++||+|+..++.|++.... .+.+.+++.+|..++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~-~~~~~~~~~~d~~~~ 106 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGE-FKGKFKVFIGDVSEF 106 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGG-GTTSEEEEESCGGGC
T ss_pred CCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHH-cCCCceEEECchhhh
Confidence 3568999999999998877655 445999999999999999998643 245688999997553
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.80 E-value=2.6e-05 Score=80.41 Aligned_cols=108 Identities=17% Similarity=0.242 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
...+||.||.|.|..+.++.+. +..+|+.+|+++.+++.+++-... ..++++++..|.... .-..++||+|+.
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 4579999999999999999987 447999999999999977654322 237899999998764 234578999996
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..+-.. ..+. .-.-..+++.+++.|+|||+++.-.
T Consensus 186 D~~dp~-~~~~--~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 186 DSSDPV-GPAE--SLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp CCC----------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCC-Ccch--hhhhHHHHHHHHhhcCCCcEEEEec
Confidence 432211 1100 0114578999999999999998864
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=5.8e-05 Score=73.33 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|+|.|.-+..++-. +..+++.+|.+..-+..+++-....+ .++++++..++++. .+.+||+|++..+..
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~~ 143 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFAS 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSSS
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhcC
Confidence 4579999999999999888865 44699999999988887766554444 58999999999875 356899999755322
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMS 199 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~ 199 (771)
...++.-+.+.+++||++++.--. ...+++ .....+|.+.
T Consensus 144 -----------~~~ll~~~~~~l~~~g~~~~~KG~--~~~eEl-~~~~~~~~~~ 183 (207)
T d1jsxa_ 144 -----------LNDMVSWCHHLPGEQGRFYALKGQ--MPEDEI-ALLPEEYQVE 183 (207)
T ss_dssp -----------HHHHHHHHTTSEEEEEEEEEEESS--CCHHHH-HTSCTTEEEE
T ss_pred -----------HHHHHHHHHHhcCCCcEEEEECCC--CHHHHH-HhhhcCCEEE
Confidence 348899999999999999987632 222222 2334577654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.75 E-value=2.1e-05 Score=75.90 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=46.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 602 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~ 602 (771)
...+||++|+|+|.++..+....+ .+|++||+|+..+++|++.. ++++++.+|..+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~ 103 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSE 103 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGG
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHcc-----ccccEEEEehhh
Confidence 357899999999999876666543 48999999999999999986 358899999643
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.70 E-value=7.8e-05 Score=79.61 Aligned_cols=62 Identities=15% Similarity=-0.006 Sum_probs=49.4
Q ss_pred CccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh
Q 004164 512 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 512 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~ 584 (771)
+.|..+...-|+.-+.+ ....++|+||+|.|.++..++..++..++++||+++.++++|++.
T Consensus 198 GEl~~~~i~~Il~~l~L-----------kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~ 259 (406)
T d1u2za_ 198 GELLPNFLSDVYQQCQL-----------KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ 259 (406)
T ss_dssp CCBCHHHHHHHHHHTTC-----------CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCC-----------CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Confidence 44556666666654433 345689999999999999999988877999999999999999864
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.65 E-value=0.00012 Score=72.60 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=94.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC---CCCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF---MDETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~---~~~sFDlVi~~~ 142 (771)
...+|+|+|+|.|.-+..|+-. +..+++.+|.+..-+..++.-....+ .++.++...++++.. ..++||+|++..
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 4679999999999999888764 55699999999987776654443333 678888887776532 236899999864
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhh---hh-ccCcEEE-EeecCCCCCCCCCCccEE
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP---KF-RFGWKMS-VHAIPQKSSSEPSLQTFM 217 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~---~~-~~~w~~~-~~~i~~~~~~~~~l~~f~ 217 (771)
+. . ...++.-+..++++||++++.--. ...+++.. .+ ..++.+. +..+.-. ...-..++
T Consensus 150 va----~-------l~~ll~~~~~~l~~~g~~i~~KG~--~~~~El~~a~~~~~~~~~~~~~v~~~~lp---~~~~~r~l 213 (239)
T d1xdza_ 150 VA----R-------LSVLSELCLPLVKKNGLFVALKAA--SAEEELNAGKKAITTLGGELENIHSFKLP---IEESDRNI 213 (239)
T ss_dssp CS----C-------HHHHHHHHGGGEEEEEEEEEEECC---CHHHHHHHHHHHHHTTEEEEEEEEEECT---TTCCEEEE
T ss_pred hh----C-------HHHHHHHHhhhcccCCEEEEECCC--ChHHHHHHHHHHHHHcCCEEEEEEEEeCC---CCCCCEEE
Confidence 33 2 458999999999999999887633 22222221 11 2234332 2222111 11234577
Q ss_pred EEEEEcCCcc
Q 004164 218 VVADKENSSV 227 (771)
Q Consensus 218 ~v~~k~~~~~ 227 (771)
++.+|.+..+
T Consensus 214 v~i~K~~~~p 223 (239)
T d1xdza_ 214 MVIRKIKNTP 223 (239)
T ss_dssp EEEEECSCCC
T ss_pred EEEEECCCCC
Confidence 8888877655
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.64 E-value=6.4e-05 Score=71.61 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=79.3
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
..++|++-.|+|++..-...+.. ..++.||.|+..+++.++.+ ++ .+....++..|..+++....
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~-~~~~~~~~~~d~~~~l~~~~---------- 111 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKC-SSEQAEVINQSSLDFLKQPQ---------- 111 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC-CTTTEEEECSCHHHHTTSCC----------
T ss_pred cceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcc-cccccccccccccccccccc----------
Confidence 35899999999999887776653 49999999999999999886 43 34568889999999877543
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC-cccHHHHHHHHH--ccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-FVEGSFLLTVKD--ALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~-f~~~~fl~~~~~--~L~~~Gilv~Nl 689 (771)
...+||+|++|- |-. -.....|+.+.+ .|+++|++++-.
T Consensus 112 --------------------~~~~fDlIFlDP------------PY~~~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 112 --------------------NQPHFDVVFLDP------------PFHFNLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp --------------------SSCCEEEEEECC------------CSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred --------------------cCCcccEEEech------------hHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 135799999963 211 134567777765 589999999865
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.60 E-value=0.00055 Score=73.66 Aligned_cols=180 Identities=13% Similarity=0.093 Sum_probs=115.1
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc----C----------CCeEEEEcCCHHHHHHH
Q 004164 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G----------FHGITNVDFSKVVISDM 107 (771)
Q Consensus 42 ~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~----g----------~~~V~~vDiS~~~i~~~ 107 (771)
+..+-|.....+.+.+.+++.. .++.+|||..||+|.+...+++. + ...+.|+|+++.+...+
T Consensus 139 k~~G~f~TP~~Iv~~mv~ll~~---~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la 215 (425)
T d2okca1 139 SGAGQYFTPRPLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA 215 (425)
T ss_dssp TCCGGGCCCHHHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred ccchhhccchhhhHhhheeccC---cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHH
Confidence 3344566677888899999875 57889999999999999777663 1 12599999999988766
Q ss_pred HHHhhcCC---CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccc----------hHHHHHHHHHHHHccccCeEE
Q 004164 108 LRRNVRDR---SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELG----------HKLGNQYLSEVKRLLKSGGKF 174 (771)
Q Consensus 108 ~~~~~~~~---~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~----------~~~~~~~l~~i~rvLkpGG~~ 174 (771)
+-...-.+ ........|.... .+...||+|+++-.+......... ....-.++..+.+.|++||++
T Consensus 216 ~~n~~l~g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~ 294 (425)
T d2okca1 216 SMNLYLHGIGTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 294 (425)
T ss_dssp HHHHHHTTCCSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred HhhhhhcCCccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeE
Confidence 54432222 3456777777654 345789999998776432211100 012346889999999999998
Q ss_pred EEEEcCcc----hhhcchhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEEcCC
Q 004164 175 VCLTLAES----HVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (771)
Q Consensus 175 ii~~~~~~----~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (771)
+++..... .....+.+.+ ..++-..+..++..-=.....+..+++.+|.+.
T Consensus 295 ~iI~p~~~L~~~~~~~~iR~~Ll~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k~ 350 (425)
T d2okca1 295 AVVLPDNVLFEAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP 350 (425)
T ss_dssp EEEEEHHHHHCSTHHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred EEEechHHhhhhhhHHHHHHHHHHhcchhHhhcCCcccccCCCCCeEEEEEECCCC
Confidence 88765311 1111222222 224445566666432223456668888888654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.59 E-value=3.8e-05 Score=76.29 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=53.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
....+||.||.|.|.|+..|.... .+|++||+|+.+++..++.|. ..++++++.+|++++
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~ 79 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQF 79 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGC
T ss_pred CCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhc
Confidence 456789999999999999999874 489999999999999998874 457899999999987
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=5.3e-06 Score=83.02 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=75.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcc-------
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSAT------- 613 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~------- 613 (771)
+..+||+||+|+|.++.++.... ..+|+++|+++.+++.|+++..- ....+...+..+++.........
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKK---EPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHT---CTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhh---ccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 45689999999998776665543 34899999999999999998732 22233333444444432210000
Q ss_pred --cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 614 --DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 614 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
........ ......... .......||+|+.-. .-.. + +...---..+++++.+.|+|||.|++..+.
T Consensus 127 ~~~~~~~~~~----~~~~~~~~~-~~~~~~~fD~i~~~~-~l~~---~--~~~~~~~~~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 127 LRAAVKRVLK----CDVHLGNPL-APAVLPLADCVLTLL-AMEC---A--CCSLDAYRAALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp HHHHEEEEEE----CCTTSSSTT-TTCCCCCEEEEEEES-CHHH---H--CSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred Hhhhhhcccc----ccccccccc-ccccCCcccEEeehh-hHHH---h--cccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence 00000000 000000000 022346799998621 1000 0 000001146899999999999999986554
Q ss_pred C
Q 004164 692 R 692 (771)
Q Consensus 692 ~ 692 (771)
.
T Consensus 196 ~ 196 (257)
T d2a14a1 196 R 196 (257)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00042 Score=70.13 Aligned_cols=86 Identities=14% Similarity=0.231 Sum_probs=67.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~ 129 (771)
.+...+.+.+.. .+++.|||||||+|.+|..|++.+. +|+++++++.+++.++++..... .+++++.+|+...+
T Consensus 8 ~i~~kIv~~~~~---~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~ 83 (278)
T d1zq9a1 8 LIINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 83 (278)
T ss_dssp HHHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhCC---CCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh
Confidence 444455555543 5789999999999999999999876 99999999999998887764432 57999999998876
Q ss_pred CCCCCccEEEeccc
Q 004164 130 FMDETFDVILDKGG 143 (771)
Q Consensus 130 ~~~~sFDlVi~~~~ 143 (771)
++ .++.|+.+-.
T Consensus 84 ~~--~~~~vV~NLP 95 (278)
T d1zq9a1 84 LP--FFDTCVANLP 95 (278)
T ss_dssp CC--CCSEEEEECC
T ss_pred hh--hhhhhhcchH
Confidence 54 3566776543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.56 E-value=0.00019 Score=74.25 Aligned_cols=114 Identities=17% Similarity=0.071 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEec--
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDK-- 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~-- 141 (771)
.++.+|||+.||.|.=+..+++. +.+.++++|.++.-+..+.+...+.+ .++.....|...++..+..||.|+.-
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 194 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEccc
Confidence 68999999999999999888875 34579999999999988776665444 56777777877776667889999942
Q ss_pred ----cccccccCc------ccc---hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 142 ----GGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 142 ----~~l~~l~~~------~~~---~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|++..-++. ++- .....++|.+..+.|||||+++.+|.+
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 233221111 000 123778999999999999999999876
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=4.7e-05 Score=76.34 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=60.0
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
.+...+.+.+.. .+++.|||||||+|.+|..|++.+. +|+++|+++.+++.++++. ...++++++.+|+.++++
T Consensus 8 ~~~~~Iv~~~~~---~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~-~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 8 FVIDSIVSAINP---QKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHP-FLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHCC---CTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCT-TTGGGEEEECSCGGGCCH
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHh-hhccchhHHhhhhhhhcc
Confidence 445566666654 5789999999999999999999875 8999999999998776544 334689999999998754
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.53 E-value=6e-05 Score=75.25 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhc-cCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCee
Q 004164 516 SSYHMGIISGFTLISSYLESVAS-VGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK 594 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~-~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~ 594 (771)
-.|.++|...-......+..... -....+||+||+|.|.+...+.+.+|+++++++|+ |.|++.+ + ..+|++
T Consensus 55 ~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~--~~~ri~ 127 (244)
T d1fp1d2 55 QIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA----P--PLSGIE 127 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----C--CCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc----C--CCCCeE
Confidence 34677776433322222211111 14457899999999999999999999999999998 5555422 2 357999
Q ss_pred EEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHH
Q 004164 595 VHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLT 674 (771)
Q Consensus 595 v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~ 674 (771)
++.+|.++ .. ...|++++=- - .... |.+ -....|++
T Consensus 128 ~~~gd~~~---~~---------------------------------p~~D~~~l~~--v--Lh~~--~de--~~~~iL~~ 163 (244)
T d1fp1d2 128 HVGGDMFA---SV---------------------------------PQGDAMILKA--V--CHNW--SDE--KCIEFLSN 163 (244)
T ss_dssp EEECCTTT---CC---------------------------------CCEEEEEEES--S--GGGS--CHH--HHHHHHHH
T ss_pred EecCCccc---cc---------------------------------ccceEEEEeh--h--hhhC--CHH--HHHHHHHH
Confidence 99998642 11 2358888711 0 0000 011 12467899
Q ss_pred HHHccCCCcEEEEE
Q 004164 675 VKDALSEQGLFIVN 688 (771)
Q Consensus 675 ~~~~L~~~Gilv~N 688 (771)
+++.|+|||.+++.
T Consensus 164 ~~~aL~pgg~llI~ 177 (244)
T d1fp1d2 164 CHKALSPNGKVIIV 177 (244)
T ss_dssp HHHHEEEEEEEEEE
T ss_pred HHHHcCCCcEEEEE
Confidence 99999999977764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.44 E-value=0.00012 Score=72.25 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=75.7
Q ss_pred Cccccccch----hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc----C-CCeEEEEcCCHHHHHHHHHHhh
Q 004164 42 DSFEWYAEW----PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNV 112 (771)
Q Consensus 42 ~~~ew~~~~----~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~----g-~~~V~~vDiS~~~i~~~~~~~~ 112 (771)
..+.|.+.. +.-.-.+.+++.. .++.+|||+|++.|..+..+++. + .++|+++|+.+.... ...
T Consensus 53 ~~~~w~G~p~~k~p~d~~~~~eli~~---~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~----~~~ 125 (232)
T d2bm8a1 53 SPYQWRGLRMLKDPDTQAVYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ----IPA 125 (232)
T ss_dssp SCCEETTEECCSCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC----CCG
T ss_pred cCccccceecccCHHHHHHHHHHHHH---hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh----hhh
Confidence 346676652 2223344555543 24579999999999877666532 3 368999999874322 112
Q ss_pred cCCCCcEEEEeecCCCC----CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 113 RDRSDMRWRVMDMTSMQ----FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 113 ~~~~~i~~~~~D~~~l~----~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
....+++++.+|..+.. +....+|+|+.-+. |.. + ..... + ++..+|++||++++-+.
T Consensus 126 ~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~~---~---~v~~~-~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 126 SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-HAN---T---FNIMK-W-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-CSS---H---HHHHH-H-HHHHTCCTTCEEEECSC
T ss_pred ccccceeeeecccccHHHHHHHHhcCCCEEEEcCC-cch---H---HHHHH-H-HHhcccCcCCEEEEEcC
Confidence 33478999999987653 34456888775443 221 1 01112 2 35689999999998765
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.00035 Score=71.06 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=98.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+++.|-|+=+..|.....+..|+++|+++.-++..++.+ |+ ..+.++..|+. ......
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~---~~~~~~~~~~~-~~~~~~-------- 168 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM---KATVKQGDGRY-PSQWCG-------- 168 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEEECCTTC-THHHHT--------
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc---cceeeeccccc-cchhcc--------
Confidence 4557899999999988888888887789999999999888777765 54 22444444432 222211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC--------------cccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD--------------FVEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~--------------f~~~~fl~~~~~~L~~~ 682 (771)
..+||.|++|+-.+. .|+.-..++ =+..+.|..+...|++|
T Consensus 169 -----------------------~~~fd~IL~DaPCSg--~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g 223 (284)
T d1sqga2 169 -----------------------EQQFDRILLDAPCSA--TGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG 223 (284)
T ss_dssp -----------------------TCCEEEEEEECCCCC--GGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred -----------------------cccccEEEEeccccc--cCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 257999999995542 122111221 12567788889999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhccceEEe
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 714 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~ 714 (771)
|.+|.-..+-.++..+.++..+-+-++....+
T Consensus 224 G~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~~ 255 (284)
T d1sqga2 224 GTLVYATCSVLPEENSLQIKAFLQRTADAELC 255 (284)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHCTTCEEC
T ss_pred ceEEEeeecCchhhCHHHHHHHHHhCCCcEEe
Confidence 99999999989998999999887777765443
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.41 E-value=0.00018 Score=76.02 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=82.0
Q ss_pred CCCcEEEEeccccHHHH-HHHHhCCCCcEEEEEcCHHHHHHHHhhcCC---C------------CCCCeeEEEcchHHHH
Q 004164 541 KSVKAVVIGLGAGLLPM-FLHECMPFVGIEAVELDLTMLNLAEDYFGF---T------------QDKSLKVHITDGIKFV 604 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~-~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~---~------------~~~r~~v~i~Dg~~~l 604 (771)
++.+||+...|+|.... ++.+. +..+|+++|+||..++++++.+.+ . ....+.+...|+..++
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 46789999999998876 45544 556999999999999999998722 1 1345889999999998
Q ss_pred HhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcE
Q 004164 605 REMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL 684 (771)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gi 684 (771)
.+.. .+||+|.+|-+.+ | ..||+.+.+.++.+|+
T Consensus 124 ~~~~--------------------------------~~fDvIDiDPfGs--------~------~pfldsAi~a~~~~Gl 157 (375)
T d2dula1 124 AERH--------------------------------RYFHFIDLDPFGS--------P------MEFLDTALRSAKRRGI 157 (375)
T ss_dssp HHST--------------------------------TCEEEEEECCSSC--------C------HHHHHHHHHHEEEEEE
T ss_pred Hhhc--------------------------------CcCCcccCCCCCC--------c------HHHHHHHHHHhccCCE
Confidence 7643 6799999987654 2 6799999999999999
Q ss_pred EEEEe
Q 004164 685 FIVNL 689 (771)
Q Consensus 685 lv~Nl 689 (771)
|.+-.
T Consensus 158 l~vTa 162 (375)
T d2dula1 158 LGVTA 162 (375)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99753
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.38 E-value=0.0001 Score=72.79 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=64.9
Q ss_pred CCCCcEEEEeccccHHHHHHHH----hCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHH--HHHhhccCCcc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHE----CMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK--FVREMKSSSAT 613 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~----~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~--~l~~~~~~~~~ 613 (771)
-+|.+||.||.+.|..+.++.. ..+..+|.+||+|+.....+.. ..++++++.+|..+ .+....
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----~~~~I~~i~gDs~~~~~~~~l~----- 148 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----DMENITLHQGDCSDLTTFEHLR----- 148 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----GCTTEEEEECCSSCSGGGGGGS-----
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----cccceeeeecccccHHHHHHHH-----
Confidence 3678999999988855554443 3466799999999865443322 34789999999753 222221
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 614 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
...+|+||+|.+... ...+ .++ .....|++||++|+
T Consensus 149 --------------------------~~~~dlIfID~~H~~--------~~v~--~~~--~~~~lLk~GG~iIv 184 (232)
T d2bm8a1 149 --------------------------EMAHPLIFIDNAHAN--------TFNI--MKW--AVDHLLEEGDYFII 184 (232)
T ss_dssp --------------------------SSCSSEEEEESSCSS--------HHHH--HHH--HHHHTCCTTCEEEE
T ss_pred --------------------------hcCCCEEEEcCCcch--------HHHH--HHH--HHhcccCcCCEEEE
Confidence 245899999864331 1111 222 24578999999987
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00051 Score=69.80 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCCccEEEe---
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILD--- 140 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDlVi~--- 140 (771)
.++.+|||+.+|.|.=|..+++.+. +.|+++|+++.-+..+++.+...+.+......+.... ....+.||.|+.
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 6889999999999999999988743 6899999999999988887776665544444333322 133468999993
Q ss_pred ---ccccccccCc------ccc---hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 141 ---KGGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 141 ---~~~l~~l~~~------~~~---~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.|++..-++. .+- .....++|....+.|||||+++-+|.+
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 2333221111 000 123788999999999999999999876
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.23 E-value=0.00029 Score=67.44 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=36.8
Q ss_pred CCCCcEEEEecccc----HHHHHHHHhCC----CCcEEEEEcCHHHHHHHHhh
Q 004164 540 GKSVKAVVIGLGAG----LLPMFLHECMP----FVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 540 ~~~~~vLviGlG~G----~l~~~L~~~~p----~~~i~~VEiD~~v~~vA~~~ 584 (771)
+.+.||+.+|+|+| +|++.|.+..+ ..+|.+.|||+.+++.|++-
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g 75 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG 75 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence 56789999999999 57888877533 24799999999999999743
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.0012 Score=67.22 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCC---CCCccEEEe
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFM---DETFDVILD 140 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~---~~sFDlVi~ 140 (771)
.++.+|||+.||+|.-+.++++. +.+.|+++|+++.-++.+++.+.+.+ .++.+...|...+... .+.||.|+.
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 68999999999999999888875 34589999999999988877776655 5788888888776422 257999994
Q ss_pred c------cccccccCc------ccc-----hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 141 K------GGLDALMEP------ELG-----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 141 ~------~~l~~l~~~------~~~-----~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
- |++...++. ... .....+++.... .|+|||+++-+|.+
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS 228 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS 228 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence 3 232221110 000 011345666666 47999999988876
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.21 E-value=0.00023 Score=70.79 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=45.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 602 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~ 602 (771)
...+||+||+|.|.+...+.+.+|++++++.|+ |.|++.| + ..+|++++.+|..+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~--~~~rv~~~~gD~f~ 134 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----S--GSNNLTYVGGDMFT 134 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----C--CBTTEEEEECCTTT
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----c--ccCceEEEecCccc
Confidence 446799999999999999999999999999999 5555433 2 36899999999753
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.00014 Score=73.23 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=36.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg 586 (771)
++.++|+||+|.|.++.++..... .+|+++|+++.+++.|+++..
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~ 98 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQ 98 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHT
T ss_pred CCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHh
Confidence 567999999999977654443322 489999999999999999985
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00015 Score=72.47 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=51.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
.....||.||.|.|+|+..|.+.. .++++||+|+.+++..++.|.. .++++++.+|++++
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTF 79 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGC
T ss_pred CCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhh--ccchhHHhhhhhhh
Confidence 345789999999999999999874 4899999999999999887643 57899999999975
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.06 E-value=0.00081 Score=63.64 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=80.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.....+++..+|+|+-+..+.+. +.+|.++|.||.++..|++.+ ++++.++.++--++-.....
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~----~~~~~~~~~~f~~~~~~l~~---------- 80 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH----LPGLTVVQGNFRHLKRHLAA---------- 80 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC----CTTEEEEESCGGGHHHHHHH----------
T ss_pred CCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc----ccceeEeehHHHHHHHHHHH----------
Confidence 34457899999999888877775 358999999999999998853 47899999887765443321
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-ccHHHHHHHHHccCCCcEEEEEec
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.....+|.|++|+--+ +..+--|...| .....|....+.|+++|.+++...
T Consensus 81 ------------------~~~~~vdgIl~DLGvS--s~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 81 ------------------LGVERVDGILADLGVS--SFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp ------------------TTCSCEEEEEEECSCC--HHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ------------------cCCCccCEEEEEccCC--HHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 1125799999998322 10111112222 123478899999999999997764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.04 E-value=0.00093 Score=69.04 Aligned_cols=141 Identities=14% Similarity=0.036 Sum_probs=85.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-----CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-----PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-----p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
....+||+.|+|+|++...+...+ +...+.++|+|+.++++|+....+. .....+..+|....
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~----------- 183 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-RQKMTLLHQDGLAN----------- 183 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-TCCCEEEESCTTSC-----------
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh-hhhhhhhccccccc-----------
Confidence 455789999999998877665432 3448999999999999998776442 23456666665421
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCC-CC------C-CCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSP-DS------S-SGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~-d~------~-~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
....+||+||.+.-=+ .. . .-...........-|++.+.+.|+|+|.++
T Consensus 184 -----------------------~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 184 -----------------------LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp -----------------------CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred -----------------------cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 1236799999964110 00 0 000001122345568999999999999777
Q ss_pred EEeccC--ChhHHHHHHHHHHHhccceEEee
Q 004164 687 VNLVSR--SQATKDMVISRMKMVFNHLFCLQ 715 (771)
Q Consensus 687 ~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~ 715 (771)
+=+... .......+-+.|.+.|.-...+.
T Consensus 241 ~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~ 271 (328)
T d2f8la1 241 FLVPDAMFGTSDFAKVDKFIKKNGHIEGIIK 271 (328)
T ss_dssp EEEEGGGGGSTTHHHHHHHHHHHEEEEEEEE
T ss_pred EEecCccccCchhHHHHHHHHhCCcEEEEEE
Confidence 644321 11223344555666665333333
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.02 E-value=8.8e-05 Score=73.97 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=52.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
....+||.||.|.|+|+..|.+.. .+|++||+|+.+++.+++.|.. .++++++.+|++++
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~--~~n~~ii~~D~l~~ 87 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDILQF 87 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT--CSEEEECCSCCTTT
T ss_pred CCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhh--ccchhhhhhhhhcc
Confidence 345689999999999999999884 4899999999999999988863 56899999999986
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.0018 Score=71.36 Aligned_cols=179 Identities=8% Similarity=0.033 Sum_probs=107.9
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc----C---------------CCeEEEEcCCHHHHH
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G---------------FHGITNVDFSKVVIS 105 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~----g---------------~~~V~~vDiS~~~i~ 105 (771)
+-|.....+.+.+.+++.. .++.+|+|..||+|.+....++. . ...++|+|+++.+..
T Consensus 144 GqfyTP~~Iv~~mv~ll~~---~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~ 220 (524)
T d2ar0a1 144 GQYFTPRPLIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 220 (524)
T ss_dssp -CCCCCHHHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred chhccccchhHhhhhcccC---ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHH
Confidence 3455566788888898875 67889999999999998766552 1 125899999999887
Q ss_pred HHHHHhhcCCC------CcEEEEeecCCCC-CCCCCccEEEeccccccccCccc-------chHHHHHHHHHHHHccccC
Q 004164 106 DMLRRNVRDRS------DMRWRVMDMTSMQ-FMDETFDVILDKGGLDALMEPEL-------GHKLGNQYLSEVKRLLKSG 171 (771)
Q Consensus 106 ~~~~~~~~~~~------~i~~~~~D~~~l~-~~~~sFDlVi~~~~l~~l~~~~~-------~~~~~~~~l~~i~rvLkpG 171 (771)
.++-.+.-.+. .-.+...+....+ ....+||+|+++-.+..-..... ....--.++..+.+.|++|
T Consensus 221 la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 221 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp HHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence 65443322221 1223334433221 23468999998876642211110 0011235899999999999
Q ss_pred eEEEEEEcCc----chhhcchhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEEcCCc
Q 004164 172 GKFVCLTLAE----SHVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSS 226 (771)
Q Consensus 172 G~~ii~~~~~----~~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~~ 226 (771)
|++.++.... ......+.+.+ ..++-..+..++..-=.....+..+++.+|.+..
T Consensus 301 Gr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~~ 360 (524)
T d2ar0a1 301 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 360 (524)
T ss_dssp EEEEEEEEHHHHHCCTHHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCSS
T ss_pred CcEEEEEehHHhhhhhhhHHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECCCCC
Confidence 9988886431 11111222222 2345556667764322234567788888887653
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.95 E-value=0.0019 Score=66.43 Aligned_cols=131 Identities=16% Similarity=0.177 Sum_probs=95.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||+++.|.|+=+..+..... ...|+++|+++.-+...++.+ |. .++.+...|+..+ ...
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~---~~i~~~~~d~~~~-~~~--------- 182 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHI-GEL--------- 182 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGG-GGG---------
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh---hcccccccccccc-ccc---------
Confidence 446899999999987777877765 458999999999998877655 54 4577777887765 111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-CcC-------------cccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AAD-------------FVEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p-p~~-------------f~~~~fl~~~~~~L~~~ 682 (771)
...||.|++|+-.+.. |+.-. |.. -+..+.|..+...|+||
T Consensus 183 -----------------------~~~fD~ILvDaPCSg~--G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g 237 (313)
T d1ixka_ 183 -----------------------NVEFDKILLDAPCTGS--GTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG 237 (313)
T ss_dssp -----------------------CCCEEEEEEECCTTST--TTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred -----------------------cccccEEEEccccccC--CceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC
Confidence 2579999999955532 22111 111 23456778888899999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhcc
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFN 709 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 709 (771)
|.+|.-..+-.++..+.++..+-+.++
T Consensus 238 G~lVYsTCSl~~eENE~VV~~~L~~~~ 264 (313)
T d1ixka_ 238 GILVYSTCSLEPEENEFVIQWALDNFD 264 (313)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred cEEEEeeccCChHhHHHHHHHHHhcCC
Confidence 999999988899888999988877664
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.92 E-value=0.0022 Score=62.91 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhc-CCCC-cEEEEe-ecCCCCCCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-DRSD-MRWRVM-DMTSMQFMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~-~~~~-i~~~~~-D~~~l~~~~~sFDlVi~~~ 142 (771)
.+..+|+|+|||.|.++..++... ...+.|+|+--.. .+.-.... ...+ +++... |+.. .+.+..|+|+|-.
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~--~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm 140 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG--HEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDI 140 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT--SCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEECC
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc--ccCCccccccccccccchhhhhHHh--cCCCcCCEEEeeC
Confidence 578899999999999999998773 2467777763110 00000000 0112 233322 2222 3467899999865
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+-. -++...+...-.++++-+.++|+|||-|+|--++
T Consensus 141 ~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 141 GES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 432 2222212222346788888999999999987776
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.0018 Score=65.99 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=94.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||+++.|.|+=+..|...+. ...|+++|+++.-++..++.+ |+ ..+.+...|+..+-....
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~---~~~~~~~~d~~~~~~~~~------- 162 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSDP------- 162 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTCG-------
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc---cceeeeehhhhhhccccc-------
Confidence 3456799999999987777776653 468999999999888888776 54 468999999986522211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-Cc-------------Cc--ccHHHHHHHHHcc
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AA-------------DF--VEGSFLLTVKDAL 679 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p-p~-------------~f--~~~~fl~~~~~~L 679 (771)
...+||.|++|+-.+. .|+.-. |. .+ +....|..+. .|
T Consensus 163 -----------------------~~~~fD~VL~DaPCSg--~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l 216 (293)
T d2b9ea1 163 -----------------------RYHEVHYILLDPSCSG--SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TF 216 (293)
T ss_dssp -----------------------GGTTEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHT-TC
T ss_pred -----------------------ccceeeEEeecCcccc--hhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hc
Confidence 1257999999985542 122111 11 01 1233444444 47
Q ss_pred CCCcEEEEEeccCChhHHHHHHHHHHHhccceEE
Q 004164 680 SEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFC 713 (771)
Q Consensus 680 ~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~ 713 (771)
++||.+|.-..+-.++..+.+++.+-+-++..+.
T Consensus 217 ~~gG~lvYsTCSl~~~ENe~vV~~~L~~~~~~~~ 250 (293)
T d2b9ea1 217 PSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFR 250 (293)
T ss_dssp TTCCEEEEEESCCCGGGTHHHHHHHHTTSTTTEE
T ss_pred ccccEEEEeeccCChhHhHHHHHHHHHhCCCCEE
Confidence 8999999999888888889999888877665443
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.0036 Score=58.90 Aligned_cols=148 Identities=13% Similarity=0.129 Sum_probs=95.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||.||.+-|+...++.+.. +...|.+||+.|. ..-+.+.++.+|....-..... ..
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~-------~~- 82 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKAL-------LE- 82 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHH-------HH-
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhh-------hh-
Confidence 45689999999999999888754 4568999998762 2235678888887532111100 00
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc---CcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA---DFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~---~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
.....++|+|+.|.-.. . .|....-. .-+-...+..+.+.|++||.||+=+... ..
T Consensus 83 -----------------~~~~~~~DlVlSD~ap~-~-sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g--~~ 141 (180)
T d1ej0a_ 83 -----------------RVGDSKVQVVMSDMAPN-M-SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG--EG 141 (180)
T ss_dssp -----------------HHTTCCEEEEEECCCCC-C-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS--TT
T ss_pred -----------------hccCcceeEEEecccch-h-cccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC--cc
Confidence 00136799999986332 2 22110000 0123345567788899999999988753 33
Q ss_pred HHHHHHHHHHhccceEEeeecC----CccEEEEEec
Q 004164 697 KDMVISRMKMVFNHLFCLQLEE----DVNLVLFGLS 728 (771)
Q Consensus 697 ~~~v~~~l~~vF~~v~~~~~~~----~~N~Vl~a~~ 728 (771)
...++..|+..|..|..++... .....++|..
T Consensus 142 ~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 142 FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177 (180)
T ss_dssp HHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred HHHHHHHHHhhcCEEEEECCCCcccCCceEEEEEec
Confidence 4568999999999999998643 2345566654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.67 E-value=0.0002 Score=71.22 Aligned_cols=54 Identities=15% Similarity=0.025 Sum_probs=43.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI 601 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~ 601 (771)
...+||+||+|.|.++.-|.+.+|+++++++|+-+. ++.++ ..+|++...+|-.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~------~~~r~~~~~~d~~ 134 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP------SYPGVEHVGGDMF 134 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC------CCTTEEEEECCTT
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc------cCCceEEeccccc
Confidence 346899999999999999999999999999999654 33322 3478999888854
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.66 E-value=0.0015 Score=68.83 Aligned_cols=100 Identities=15% Similarity=0.044 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCcchhHHHHHh-cCCCeEEEEcCCHHHHHHHHHHhhcCC----------------CCcEEEEeecCCCC-
Q 004164 68 PPPQILVPGCGNSRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDR----------------SDMRWRVMDMTSMQ- 129 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~-~g~~~V~~vDiS~~~i~~~~~~~~~~~----------------~~i~~~~~D~~~l~- 129 (771)
.+.+|||..||+|..+...+. .|...|++.|+|+.+++.+++.....+ ..+.+.++|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 357999999999999986655 466789999999999998866543222 12455666654432
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
-..+.||+|.. +-+..+. .+++...+.++.||.+.++.
T Consensus 125 ~~~~~fDvIDi----DPfGs~~-------pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDL----DPFGSPM-------EFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEE----CCSSCCH-------HHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccC----CCCCCcH-------HHHHHHHHHhccCCEEEEEe
Confidence 23457998874 3344433 78999999999998876654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.00082 Score=67.89 Aligned_cols=61 Identities=21% Similarity=0.190 Sum_probs=52.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~ 603 (771)
....||.||-|.|+|+..|.+.. .+|++||+|+.+++..++.|.- ....+++++.+|++++
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 82 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred CCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence 45689999999999999999885 4899999999999999988743 2346899999999875
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.52 E-value=0.036 Score=54.11 Aligned_cols=102 Identities=13% Similarity=0.188 Sum_probs=77.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHH---HHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL---AEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~v---A~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...++++||.|+|.=...|.-++|+.+++.||-+.-=+.. +.+..|+ +++.++.+.+.++-....
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L---~n~~i~~~R~E~~~~~~~--------- 137 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKD--------- 137 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTT---------
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC---CCcEEEeehhhhcccccc---------
Confidence 3468999999999666667778999999999999865544 5566687 468899888877632211
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...+||+|+.=+.++ -..+++.+...|+++|.+++=-
T Consensus 138 ---------------------~~~~~D~v~sRAva~--------------l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 138 ---------------------VRESYDIVTARAVAR--------------LSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp ---------------------TTTCEEEEEEECCSC--------------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ---------------------ccccceEEEEhhhhC--------------HHHHHHHHhhhcccCCEEEEEC
Confidence 135799999866554 1678899999999999998744
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.45 E-value=0.0052 Score=57.16 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=66.5
Q ss_pred CCCCcEEEEecccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||++|+|+- .+...+...+....|.++|.++.-++.|+++ |. +.-+.....|..+.+++..
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~-Ga--~~~i~~~~~~~~~~i~~~t---------- 93 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-GA--THVINSKTQDPVAAIKEIT---------- 93 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-TC--SEEEETTTSCHHHHHHHHT----------
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc-CC--eEEEeCCCcCHHHHHHHHc----------
Confidence 45578999998744 3344444455555889999999999999874 64 2212222245666666654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
+..+|+||--+ + ..+.++.+.+.|+++|.+++
T Consensus 94 ---------------------~gg~D~vid~~--G--------------~~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 94 ---------------------DGGVNFALEST--G--------------SPEILKQGVDALGILGKIAV 125 (174)
T ss_dssp ---------------------TSCEEEEEECS--C--------------CHHHHHHHHHTEEEEEEEEE
T ss_pred ---------------------CCCCcEEEEcC--C--------------cHHHHHHHHhcccCceEEEE
Confidence 24699987622 2 16778899999999999885
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.0027 Score=61.20 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=72.8
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHH---HhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLA---EDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA---~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
+.++++||.|+|.=...|+-.+|+.+++.||-...=+... .+-+|+ ++++++.+.+.++ .
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~~----~---------- 128 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL---ENIEPVQSRVEEF----P---------- 128 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC---SSEEEEECCTTTS----C----------
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC---cceeeeccchhhh----c----------
Confidence 4689999999995555566688999999999998765544 444576 4699998877654 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...+||+|+.=++++ -..+++.+...|+++|.+++--
T Consensus 129 --------------------~~~~fD~V~sRA~~~--------------~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 129 --------------------SEPPFDGVISRAFAS--------------LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --------------------CCSCEEEEECSCSSS--------------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred --------------------cccccceehhhhhcC--------------HHHHHHHHHHhcCCCcEEEEEC
Confidence 125799998744433 1678899999999999998644
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.41 E-value=0.004 Score=59.27 Aligned_cols=115 Identities=15% Similarity=0.067 Sum_probs=73.8
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+|||+|.|+ |.+...+.......+|.++|.++.-++.|+++ |. +.-+.-...|..+.+.+...
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~-Ga--~~~~~~~~~~~~~~i~~~t~--------- 91 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GF--EIADLSLDTPLHEQIAALLG--------- 91 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TC--EEEETTSSSCHHHHHHHHHS---------
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc-cc--cEEEeCCCcCHHHHHHHHhC---------
Confidence 4557899999987 55666666676667999999999999999876 43 11011112455566666541
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
+..+|++|- .-..+............-..+.|+.+.+.++|+|.+++=
T Consensus 92 ---------------------g~g~D~vid-~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 92 ---------------------EPEVDCAVD-AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp ---------------------SSCEEEEEE-CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred ---------------------CCCcEEEEE-CccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 356899874 322222111111122233578999999999999988853
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.18 E-value=0.005 Score=57.63 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=63.7
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+|||+|.|+ |.+...+.+.+...+|.++|.++.-++.|++. |. +.-+.....|..++.+.....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga--~~vi~~~~~~~~~~~~~i~~~-------- 95 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GA--DLTLNRRETSVEERRKAIMDI-------- 95 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TC--SEEEETTTSCHHHHHHHHHHH--------
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccc-cc--eEEEeccccchHHHHHHHHHh--------
Confidence 3457899999873 56666677776544899999999999999764 53 111111113444443332200
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+..+|+||--+ .. +..++.+.+.|+++|.+++
T Consensus 96 -------------------~~~~g~Dvvid~v-G~---------------~~~~~~a~~~l~~~G~iv~ 129 (182)
T d1vj0a2 96 -------------------THGRGADFILEAT-GD---------------SRALLEGSELLRRGGFYSV 129 (182)
T ss_dssp -------------------TTTSCEEEEEECS-SC---------------TTHHHHHHHHEEEEEEEEE
T ss_pred -------------------hCCCCceEEeecC-Cc---------------hhHHHHHHHHhcCCCEEEE
Confidence 0134599987421 11 3357888899999999874
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.10 E-value=0.0024 Score=61.43 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=69.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+.|+|+|.+...+.+..+ ...+.++|+|+..+.++ .+..++.+|...+.
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~-------------- 74 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE-------------- 74 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC--------------
T ss_pred CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccc--------------
Confidence 4567999999999987766665544 45799999999754432 34677888865531
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CCC-----------------CcCCcCcccHHHHHHHHHcc
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM-----------------TCPAADFVEGSFLLTVKDAL 679 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~--~g~-----------------s~pp~~f~~~~fl~~~~~~L 679 (771)
...+||+|+.+..-.... ... ..+...-+...|++.+.+.|
T Consensus 75 --------------------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~l 134 (223)
T d2ih2a1 75 --------------------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL 134 (223)
T ss_dssp --------------------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHE
T ss_pred --------------------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhc
Confidence 136799999854211000 000 00011113467889999999
Q ss_pred CCCcEEEEEe
Q 004164 680 SEQGLFIVNL 689 (771)
Q Consensus 680 ~~~Gilv~Nl 689 (771)
++||.+++=+
T Consensus 135 k~~G~~~~I~ 144 (223)
T d2ih2a1 135 KPGGVLVFVV 144 (223)
T ss_dssp EEEEEEEEEE
T ss_pred ccCCceEEEE
Confidence 9999987644
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.05 E-value=0.0057 Score=57.00 Aligned_cols=100 Identities=19% Similarity=0.157 Sum_probs=67.5
Q ss_pred cCCCCcEEEEeccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 539 VGKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 539 ~~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
.....+|||+|.|+ |.+...+.+.+...+|.++|.++.-++.|++ +|. +.-+.....|-.+.+.+..
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~-lGa--~~~i~~~~~~~~~~v~~~t--------- 92 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF-YGA--TDILNYKNGHIEDQVMKLT--------- 92 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH-HTC--SEEECGGGSCHHHHHHHHT---------
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh-hCc--cccccccchhHHHHHHHHh---------
Confidence 35567899999986 6666677776655589999999999999987 453 2222222234455555543
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
.+..+|+||--+.+ .+.++.+.+.|+|+|.+++
T Consensus 93 ---------------------~g~G~D~vid~~g~----------------~~~~~~a~~~~~~~G~iv~ 125 (174)
T d1jqba2 93 ---------------------NGKGVDRVIMAGGG----------------SETLSQAVKMVKPGGIISN 125 (174)
T ss_dssp ---------------------TTSCEEEEEECSSC----------------TTHHHHHHHHEEEEEEEEE
T ss_pred ---------------------hccCcceEEEccCC----------------HHHHHHHHHHHhcCCEEEE
Confidence 13559988762211 3457888899999999985
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0065 Score=63.16 Aligned_cols=123 Identities=8% Similarity=0.049 Sum_probs=83.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||++-+|.|.++..|.... .+|++||+++..++.|++......-.+++++.+|..+++....
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~----------- 277 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP----------- 277 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG-----------
T ss_pred CCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh-----------
Confidence 455789999999999999998765 5899999999999999988643334678999998877654432
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
.....||+||+|- |..|+ .++++.+.+. ++.=++. +.|....+.+.
T Consensus 278 ------------------~~~~~~d~vilDP----PR~G~---------~~~~~~l~~~-~~~~ivY--VSCnp~TlaRD 323 (358)
T d1uwva2 278 ------------------WAKNGFDKVLLDP----ARAGA---------AGVMQQIIKL-EPIRIVY--VSCNPATLARD 323 (358)
T ss_dssp ------------------GGTTCCSEEEECC----CTTCC---------HHHHHHHHHH-CCSEEEE--EESCHHHHHHH
T ss_pred ------------------hhhccCceEEeCC----CCccH---------HHHHHHHHHc-CCCEEEE--EeCCHHHHHHH
Confidence 1135699999963 23343 3567776653 5554444 44554455444
Q ss_pred HHHHHHHhcc
Q 004164 700 VISRMKMVFN 709 (771)
Q Consensus 700 v~~~l~~vF~ 709 (771)
+-..++.-|.
T Consensus 324 l~~l~~~gy~ 333 (358)
T d1uwva2 324 SEALLKAGYT 333 (358)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHCCCe
Confidence 3333344454
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.83 E-value=0.0032 Score=62.20 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=53.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC---CCC------CCCeeEEEcchHHHHHhhc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FTQ------DKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg---~~~------~~r~~v~i~Dg~~~l~~~~ 608 (771)
+...+||+.=+|.|.-+..+.... .+|++||-+|.+..+.++-+. ... -.|++++.+|+++|+++..
T Consensus 87 ~~~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~ 162 (250)
T d2oyra1 87 DYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_dssp TBCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred CCCCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccC
Confidence 445689999999999998888875 589999999999887765541 111 1389999999999998654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.72 E-value=0.014 Score=54.23 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCcc
Q 004164 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~-G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (771)
+++++||-+|||. |..+..+++. |..+|+++|.++.-++.+++ + +. ..++ |..+.+ .....||
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~-l---Ga-~~~i--~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF-Y---GA-TDIL--NYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH-H---TC-SEEE--CGGGSCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh-h---Cc-cccc--cccchhHHHHHHHHhhccCcc
Confidence 6899999999997 7888888887 66689999999988776643 3 11 1122 222211 1234599
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|++.-.-. ..+++..+.++|+|+++++...
T Consensus 99 ~vid~~g~~-------------~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 99 RVIMAGGGS-------------ETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp EEEECSSCT-------------THHHHHHHHEEEEEEEEECCCC
T ss_pred eEEEccCCH-------------HHHHHHHHHHhcCCEEEEEeec
Confidence 998642211 4578888999999999997654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.024 Score=52.11 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=65.0
Q ss_pred CCCCcEEEEecccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||++|+|+. .+...+.......+|.++|.++.-++.|+++ |. +..+..-..|..+..+....
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~-Ga--~~~~~~~~~~~~~~~~~~~~--------- 92 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-GA--DLVLQISKESPQEIARKVEG--------- 92 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TC--SEEEECSSCCHHHHHHHHHH---------
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh-CC--cccccccccccccccccccc---------
Confidence 44568999999754 4455555666555899999999999999875 54 11111111233333332220
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+..+|+||- . ++ .+..++.+.+.|+++|.+++--
T Consensus 93 -------------------~~g~g~Dvvid-~-~G--------------~~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 93 -------------------QLGCKPEVTIE-C-TG--------------AEASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp -------------------HHTSCCSEEEE-C-SC--------------CHHHHHHHHHHSCTTCEEEECS
T ss_pred -------------------cCCCCceEEEe-c-cC--------------CchhHHHHHHHhcCCCEEEEEe
Confidence 01356898765 2 22 1677899999999999888643
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.63 E-value=0.0055 Score=63.02 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=51.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
....||.||-|.|+|+..|.+....-++++||+|+...+.-++.|. +++++++.+|++.|
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence 4567999999999999999887433489999999999999988874 57899999999976
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.61 E-value=0.0024 Score=62.59 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=88.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEc--CHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVEL--DLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEi--D~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+|++||+|-|+-+.++....+...+.++++ |-...-+..+.++. +-++...++.+.+
T Consensus 67 ~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~---ni~~~~~~~dv~~---------------- 127 (257)
T d2p41a1 67 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGW---NLVRLQSGVDVFF---------------- 127 (257)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTG---GGEEEECSCCTTT----------------
T ss_pred CCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCcccccccc---ccccchhhhhHHh----------------
Confidence 45799999999999999988866667777776 21000000011110 1123322222211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
..+.+.|+|++|+-.+++.. ...+-.+...|+.+.+.|+|||-|++=+.+.-......
T Consensus 128 ------------------l~~~~~D~vlcDm~ess~~~----~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e 185 (257)
T d2p41a1 128 ------------------IPPERCDTLLCDIGESSPNP----TVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIE 185 (257)
T ss_dssp ------------------SCCCCCSEEEECCCCCCSSH----HHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHH
T ss_pred ------------------cCCCcCCEEEeeCCCCCCCc----hhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHH
Confidence 12467999999984332110 11233455778888999999999999998876555556
Q ss_pred HHHHHHHhccceEEeee-c-CCccEEEEEecC
Q 004164 700 VISRMKMVFNHLFCLQL-E-EDVNLVLFGLSS 729 (771)
Q Consensus 700 v~~~l~~vF~~v~~~~~-~-~~~N~Vl~a~~~ 729 (771)
.+++|+..|........ . +...++++.+..
T Consensus 186 ~le~lq~~fgg~lVR~P~SRnst~EmY~Vs~~ 217 (257)
T d2p41a1 186 KMEALQRKHGGALVRNPLSRNSTHEMYWVSNA 217 (257)
T ss_dssp HHHHHHHHHCCEEECCTTSCTTCCCEEEETTC
T ss_pred HHHHHHHHhCCeeEcCCCCccccceeEEeecc
Confidence 78999999986444332 1 234455555433
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.57 E-value=0.012 Score=54.10 Aligned_cols=99 Identities=12% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCCCcEEEEecc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEE----cchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI----TDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i----~Dg~~~l~~~~~~~~~~ 614 (771)
....+|||+|.| .|.+...+.+... .+|.++|.++.-++.|++...- ..+.. .|..++.+....
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~-----~~~~~~~~~~~~~~~~~~~~~----- 93 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGAD-----VTLVVDPAKEEESSIIERIRS----- 93 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCS-----EEEECCTTTSCHHHHHHHHHH-----
T ss_pred CCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCc-----EEEeccccccccchhhhhhhc-----
Confidence 445689999987 4455555566654 5999999999999999886431 11111 122333333321
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+..+|+||- .-.. +..++.+.+.|+++|.+++-
T Consensus 94 -----------------------~~g~g~D~vid-~~g~---------------~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 94 -----------------------AIGDLPNVTID-CSGN---------------EKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp -----------------------HSSSCCSEEEE-CSCC---------------HHHHHHHHHHSCTTCEEEEC
T ss_pred -----------------------ccccCCceeee-cCCC---------------hHHHHHHHHHHhcCCceEEE
Confidence 01356898865 2111 56788899999999998854
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.51 E-value=0.027 Score=52.34 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=63.9
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----------CCCC
Q 004164 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----------FMDE 133 (771)
Q Consensus 67 ~~~~~ILDiGCG~-G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----------~~~~ 133 (771)
+++++||.+|||. |.++..+++. |..+|+++|.++.-++.+++ + +.. . ..|..+.. ....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~-l---Ga~-~--vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE-I---GAD-L--TLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH-T---TCS-E--EEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCccchhheeccccccccccccccccccccccccc-c---cce-E--EEeccccchHHHHHHHHHhhCCC
Confidence 6889999999985 6777777776 76689999999988876633 2 211 1 12222211 1234
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.||+|++.- ..+ ..++...+.|++||+++++...
T Consensus 100 g~Dvvid~v-----G~~--------~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 100 GADFILEAT-----GDS--------RALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp CEEEEEECS-----SCT--------THHHHHHHHEEEEEEEEECCCC
T ss_pred CceEEeecC-----Cch--------hHHHHHHHHhcCCCEEEEEeec
Confidence 699999632 111 4578888999999999887644
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.51 E-value=0.029 Score=51.12 Aligned_cols=96 Identities=14% Similarity=0.209 Sum_probs=62.6
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+|||+|.|+ |.+...+.+... .+|.+++.++.-++.|+++ |. +.-+.....|..+.+.+..
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~-Ga--~~~i~~~~~~~~~~~~~~~---------- 91 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKL-GA--SLTVNARQEDPVEAIQRDI---------- 91 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-TC--SEEEETTTSCHHHHHHHHH----------
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhcc-Cc--cccccccchhHHHHHHHhh----------
Confidence 4456899999873 455556666665 6999999999999999875 53 2222222234445444432
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+|.++.+. . ..+.++.+.+.|+++|.+++
T Consensus 92 ----------------------~g~~~~i~~~--~--------------~~~~~~~~~~~l~~~G~iv~ 122 (166)
T d1llua2 92 ----------------------GGAHGVLVTA--V--------------SNSAFGQAIGMARRGGTIAL 122 (166)
T ss_dssp ----------------------SSEEEEEECC--S--------------CHHHHHHHHTTEEEEEEEEE
T ss_pred ----------------------cCCccccccc--c--------------cchHHHHHHHHhcCCcEEEE
Confidence 2356555532 1 14567888899999999885
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.49 E-value=0.046 Score=49.87 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=63.2
Q ss_pred CCCCeEEEEcCC-cchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCC
Q 004164 67 SPPPQILVPGCG-NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (771)
Q Consensus 67 ~~~~~ILDiGCG-~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (771)
+++++||-+||| .|.++..+++. |. +|+++|.++.-++.+++. +....+ ..+-.... .....
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga~~~~-~~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GADVTL-VVDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCSEEE-ECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CCcEEE-eccccccccchhhhhhhcccccC
Confidence 688999999998 46666667666 65 999999999888766442 222222 22211111 11356
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+|++.-. . ...+....++|+++|++++....
T Consensus 99 ~D~vid~~g-----~--------~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 99 PNVTIDCSG-----N--------EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp CSEEEECSC-----C--------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred CceeeecCC-----C--------hHHHHHHHHHHhcCCceEEEecC
Confidence 899996321 1 25688888999999999987654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.21 E-value=0.025 Score=51.85 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=37.7
Q ss_pred CcEEEEecc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh
Q 004164 543 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 543 ~~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~ 584 (771)
++|++||+| ||++++.|.+..+..+|.++|.|+..++.|++.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~ 45 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL 45 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence 469999999 789999999887778999999999999999876
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.20 E-value=0.033 Score=52.63 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCcc
Q 004164 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~-G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (771)
+++++||.+|||. |..+..+++. |...|+++|.++.-++.+++. + .... .+-.+.+ .....+|
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----G--a~~~-~~~~~~~~~~~i~~~t~g~g~D 96 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G--FEIA-DLSLDTPLHEQIAALLGEPEVD 96 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T--CEEE-ETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----c--ccEE-EeCCCcCHHHHHHHHhCCCCcE
Confidence 6899999999998 6666777765 777999999999888766432 1 2222 1211111 1235699
Q ss_pred EEEeccccccccCccc--chHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 137 VILDKGGLDALMEPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~--~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++++.-.......... ........++...+.++|||+++++-.
T Consensus 97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred EEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 9997543221110000 000023789999999999999988754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.15 E-value=0.048 Score=50.41 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=68.6
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcc-hHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD-GIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~D-g~~~l~~~~~~~~~~~~~ 617 (771)
....+|||+|.|+ |.+...+.+.+...+|.++|.++.=++.|+++ |. +.-+.....| ..+.+....
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~-Ga--~~~i~~~~~~~~~~~~~~~~--------- 94 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GA--TDCLNPRELDKPVQDVITEL--------- 94 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TC--SEEECGGGCSSCHHHHHHHH---------
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh-CC--CcccCCccchhhhhhhHhhh---------
Confidence 4557899999987 77777778887766899999999999999884 53 1111111112 222222221
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCC-cEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ-GLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~-Gilv~Nl~~~ 692 (771)
.+..+|++|- .++ .++.++...+.|+++ |.+++--+..
T Consensus 95 ---------------------~~~G~d~vie--~~G--------------~~~~~~~a~~~~~~g~G~~v~vG~~~ 133 (174)
T d1e3ia2 95 ---------------------TAGGVDYSLD--CAG--------------TAQTLKAAVDCTVLGWGSCTVVGAKV 133 (174)
T ss_dssp ---------------------HTSCBSEEEE--SSC--------------CHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred ---------------------hcCCCcEEEE--ecc--------------cchHHHHHHHHhhcCCeEEEecCCCC
Confidence 0256899865 222 167899999999996 9998754433
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.04 E-value=0.057 Score=49.71 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=63.6
Q ss_pred CCCCCeEEEEcCCcch-hHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-----CCCCCCccEE
Q 004164 66 SSPPPQILVPGCGNSR-LSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-----QFMDETFDVI 138 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~-ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l-----~~~~~sFDlV 138 (771)
.+++++||-+|||.-. ++..+++. |...|+.+|.++.-++.+++ + + -..++..+-.+. .+.++.||+|
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~-~---G-a~~~i~~~~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ-L---G-ATHVINSKTQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH-H---T-CSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH-c---C-CeEEEeCCCcCHHHHHHHHcCCCCcEE
Confidence 3789999999998643 44555555 78789999999988876643 3 1 112332221111 1334679999
Q ss_pred EeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 139 i~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++.-. ....++...++++++|+++++..
T Consensus 101 id~~G-------------~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 101 LESTG-------------SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EECSC-------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEcCC-------------cHHHHHHHHhcccCceEEEEEee
Confidence 96321 12568889999999999988754
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.035 Score=56.71 Aligned_cols=77 Identities=9% Similarity=-0.020 Sum_probs=57.9
Q ss_pred hhHHHHHHHHhhCC---CCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeec
Q 004164 50 WPQLRDPLISLIGA---PTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (771)
Q Consensus 50 ~~~l~~~l~~~l~~---~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~ 125 (771)
-+.+...+.+.+.. .....+..|||||+|.|.+|..|.+. +..+|+++++++..++...++.. ..+++++..|+
T Consensus 22 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~~~~~ii~~D~ 99 (322)
T d1i4wa_ 22 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--GSPLQILKRDP 99 (322)
T ss_dssp CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--TSSCEEECSCT
T ss_pred CHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--CCCcEEEeCch
Confidence 34555556665532 11135678999999999999999987 44689999999999998876653 46799999998
Q ss_pred CCC
Q 004164 126 TSM 128 (771)
Q Consensus 126 ~~l 128 (771)
..+
T Consensus 100 l~~ 102 (322)
T d1i4wa_ 100 YDW 102 (322)
T ss_dssp TCH
T ss_pred hhc
Confidence 754
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.85 E-value=0.046 Score=50.47 Aligned_cols=45 Identities=16% Similarity=0.065 Sum_probs=34.2
Q ss_pred CCCCcEEEEeccccHH-HHHHHHhCCCCcEEEEEcCHHHHHHHHhh
Q 004164 540 GKSVKAVVIGLGAGLL-PMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l-~~~L~~~~p~~~i~~VEiD~~v~~vA~~~ 584 (771)
....+|||+|.|+..+ ...+.+.....+|.++|.++.-++.|+++
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l 71 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 71 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence 4557899999986644 33444454556899999999999999885
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.85 E-value=0.026 Score=51.75 Aligned_cols=97 Identities=16% Similarity=0.247 Sum_probs=61.9
Q ss_pred CCCCeEEEEcCC-cchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe-ecCCC-CCCCCCccEEEecc
Q 004164 67 SPPPQILVPGCG-NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMTSM-QFMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG-~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~-D~~~l-~~~~~sFDlVi~~~ 142 (771)
+++++||.+||| .|.++..+++. |. +|+++|.++.-++.+++ + +.. .++.. +-.+. ....+.||+|++.-
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~-l---Ga~-~~i~~~~~~~~~~~~~~~~d~vi~~~ 99 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK-M---GAD-HYIATLEEGDWGEKYFDTFDLIVVCA 99 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH-H---TCS-EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhc-c---CCc-EEeeccchHHHHHhhhcccceEEEEe
Confidence 689999999998 56777777766 76 89999999988876643 2 211 22211 11111 12235799998742
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.-.. . ..+....+.|+++|+++++...
T Consensus 100 ~~~~--~---------~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1piwa2 100 SSLT--D---------IDFNIMPKAMKVGGRIVSISIP 126 (168)
T ss_dssp SCST--T---------CCTTTGGGGEEEEEEEEECCCC
T ss_pred cCCc--c---------chHHHHHHHhhccceEEEeccc
Confidence 2111 1 1145678899999999987643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.35 E-value=0.1 Score=48.14 Aligned_cols=97 Identities=14% Similarity=0.027 Sum_probs=65.2
Q ss_pred CCCCCeEEEEcCCc-chhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-------CCCCCCcc
Q 004164 66 SSPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-------QFMDETFD 136 (771)
Q Consensus 66 ~~~~~~ILDiGCG~-G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l-------~~~~~sFD 136 (771)
.+++++||-+|||. |.++..+++. |...|+.+|.++.-++.+++ + +. -.++...-.+. ....+.+|
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~-~---Ga-~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA-L---GA-TDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T---TC-SEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH-h---CC-CcccCCccchhhhhhhHhhhhcCCCc
Confidence 36899999999998 7888888876 77789999999977765533 2 11 11221111110 01236789
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccC-eEEEEEEcC
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTLA 180 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpG-G~~ii~~~~ 180 (771)
+|++.- . ....+.+..+.|++| |+++++-..
T Consensus 101 ~vie~~-----G--------~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 101 YSLDCA-----G--------TAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp EEEESS-----C--------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred EEEEec-----c--------cchHHHHHHHHhhcCCeEEEecCCC
Confidence 998632 1 126789999999996 999887643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.28 E-value=0.047 Score=50.56 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=36.8
Q ss_pred CCCCcEEEEecccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC
Q 004164 540 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (771)
Q Consensus 540 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg 586 (771)
.....||++|.|+. .+...+...+...+|.+||.+++-+++|+++-.
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 45567999999865 444455666666799999999999999998853
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.25 E-value=0.036 Score=50.68 Aligned_cols=99 Identities=19% Similarity=0.326 Sum_probs=62.3
Q ss_pred CCCCcEEEEeccc--cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGA--GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~--G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
....+||++|+|| |.+...+.......+|.+++.++.=++.++++ |. +..+.....|..+.+.+..
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~-Ga--~~~i~~~~~~~~~~~~~~~--------- 93 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-GA--DYVINASMQDPLAEIRRIT--------- 93 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-TC--SEEEETTTSCHHHHHHHHT---------
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc-CC--ceeeccCCcCHHHHHHHHh---------
Confidence 4557899999743 34444444444556999999999999999874 43 1111111124444444433
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
.+..+|+||- ...+ ...++.+.+.|+|+|.+++
T Consensus 94 ---------------------~~~~~d~vid-~~g~---------------~~~~~~a~~~l~~~G~iv~ 126 (170)
T d1jvba2 94 ---------------------ESKGVDAVID-LNNS---------------EKTLSVYPKALAKQGKYVM 126 (170)
T ss_dssp ---------------------TTSCEEEEEE-SCCC---------------HHHHTTGGGGEEEEEEEEE
T ss_pred ---------------------hcccchhhhc-cccc---------------chHHHhhhhhcccCCEEEE
Confidence 1356997765 2111 5667777889999998874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.071 Score=48.87 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=63.7
Q ss_pred CCCCcEEEEec--cccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGL--GAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGl--G~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
....+|||.|. |.|.+...+..... .++.++.-+++=.+.++++ |. +.-+.....|-.+.+.+..
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~~~~~~~-Ga--~~vi~~~~~~~~~~i~~~t--------- 93 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQN-GA--HEVFNHREVNYIDKIKKYV--------- 93 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TC--SEEEETTSTTHHHHHHHHH---------
T ss_pred CCCCEEEEEeccccccccccccccccC-ccccccccccccccccccc-Cc--ccccccccccHHHHhhhhh---------
Confidence 45568999996 34566666777764 5888888899888999874 54 2212111234555555543
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
.+..+|+|+- . . ..+.++...+.|+++|.+++
T Consensus 94 ---------------------~~~g~d~v~d-~-~---------------g~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 94 ---------------------GEKGIDIIIE-M-L---------------ANVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp ---------------------CTTCEEEEEE-S-C---------------HHHHHHHHHHHEEEEEEEEE
T ss_pred ---------------------ccCCceEEee-c-c---------------cHHHHHHHHhccCCCCEEEE
Confidence 1356998774 1 1 14568888899999999885
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.18 Score=45.92 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=62.5
Q ss_pred CCCCeEEEEcCCcchh-HHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCcc
Q 004164 67 SPPPQILVPGCGNSRL-SEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~l-s~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (771)
+++++||-+|||...+ +..++.. |..+|+++|.++.-++.+++ + +.. .+...+-.+.. -....+|
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~-~---Ga~-~~~~~~~~~~~~~~~~~~~~~g~g~D 99 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE-I---GAD-LVLQISKESPQEIARKVEGQLGCKPE 99 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-T---TCS-EEEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH-h---CCc-ccccccccccccccccccccCCCCce
Confidence 6889999999987544 4555554 77789999999988876533 2 211 11211111110 0124689
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|++.-. -...++...+.+++||++++....
T Consensus 100 vvid~~G-------------~~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 100 VTIECTG-------------AEASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp EEEECSC-------------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred EEEeccC-------------CchhHHHHHHHhcCCCEEEEEecC
Confidence 9996321 126688999999999999987654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.65 E-value=0.13 Score=46.43 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=62.4
Q ss_pred CCCCcEEEEecccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+.|.|+- .+...+..... .+|.+++.++.=++.+++ +|.. .-+.....|..+-+++..
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g-~~v~~~~~~~~r~~~~k~-~Ga~--~~~~~~~~~~~~~~~~~~---------- 91 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKE-LGAD--LVVNPLKEDAAKFMKEKV---------- 91 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHH-TTCS--EEECTTTSCHHHHHHHHH----------
T ss_pred CCCCEEEEeecccchhhhhHHHhcCC-CeEeccCCCHHHhhhhhh-cCcc--eecccccchhhhhccccc----------
Confidence 44568999998754 44445555543 589999999999999987 5641 111111124455555544
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+|.+++|. . ..+.+....++|+++|.+++-
T Consensus 92 ----------------------~~~~~~v~~~--~--------------~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 92 ----------------------GGVHAAVVTA--V--------------SKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp ----------------------SSEEEEEESS--C--------------CHHHHHHHHHHEEEEEEEEEC
T ss_pred ----------------------CCCceEEeec--C--------------CHHHHHHHHHHhccCCceEec
Confidence 2355555643 1 156789999999999998864
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=93.53 E-value=0.26 Score=51.81 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=74.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-------------CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-------------FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-------------~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~ 603 (771)
....+|++-.+|+|++...+.++.. ...+.++|+|+....+|+-.+ |+ ..+..++..+|.+..
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~-~~~~~~i~~~d~l~~ 239 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI-GTDRSPIVCEDSLEK 239 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC-CSSCCSEEECCTTTS
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC-ccccceeecCchhhh
Confidence 3457899999999987655544332 135999999999999998765 33 234567777876531
Q ss_pred HHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCCCC------CCCcCCcCcccHHHHHHHH
Q 004164 604 VREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDSSS------GMTCPAADFVEGSFLLTVK 676 (771)
Q Consensus 604 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~-~s~d~~~------g~s~pp~~f~~~~fl~~~~ 676 (771)
. ...+||+||... ++..... .-..++..-.+.-|++.+.
T Consensus 240 ---~-------------------------------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~ 285 (425)
T d2okca1 240 ---E-------------------------------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMM 285 (425)
T ss_dssp ---C-------------------------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHH
T ss_pred ---h-------------------------------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHH
Confidence 1 136799999843 1110000 0000122223466999999
Q ss_pred HccCCCcEEEEEe
Q 004164 677 DALSEQGLFIVNL 689 (771)
Q Consensus 677 ~~L~~~Gilv~Nl 689 (771)
+.|++||.+++=+
T Consensus 286 ~~Lk~~G~~~iI~ 298 (425)
T d2okca1 286 LMLKTGGRAAVVL 298 (425)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HhcCCCCeEEEEe
Confidence 9999999777644
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.37 E-value=0.12 Score=47.08 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=62.2
Q ss_pred CCCcEEEEecccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEE--cchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI--TDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i--~Dg~~~l~~~~~~~~~~~~~ 617 (771)
....||++|.|+. .+...+...+....|.++|.++.-++.+++... + .++. .|-.+.+.+..
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga---~---~~i~~~~~~~~~~~~~~--------- 96 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA---D---HVVDARRDPVKQVMELT--------- 96 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC---S---EEEETTSCHHHHHHHHT---------
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc---c---eeecCcccHHHHHHHhh---------
Confidence 3467999998754 333344444455689999999999999988643 1 2222 23344444332
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
.+..+|+||--+ + ....++...+.|+++|.+++
T Consensus 97 ---------------------~~~g~d~vid~~--g--------------~~~~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 97 ---------------------RGRGVNVAMDFV--G--------------SQATVDYTPYLLGRMGRLII 129 (172)
T ss_dssp ---------------------TTCCEEEEEESS--C--------------CHHHHHHGGGGEEEEEEEEE
T ss_pred ---------------------CCCCceEEEEec--C--------------cchHHHHHHHHHhCCCEEEE
Confidence 134599887622 2 15678899999999999985
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=93.31 E-value=0.091 Score=51.40 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=59.6
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHH---HHHHhhcCC-------CCcEEEEeecC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD---MLRRNVRDR-------SDMRWRVMDMT 126 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~---~~~~~~~~~-------~~i~~~~~D~~ 126 (771)
|.+.+.. ......+|||.-||.|..+..|+..|+ +|++++-++.+... ..+++.... .+++++++|..
T Consensus 78 l~kA~gl-~~~~~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~ 155 (250)
T d2oyra1 78 VAKAVGI-KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_dssp HHHHTTC-BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred HHHHhcC-CCCCCCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHH
Confidence 4555432 112345899999999999999999987 89999999976543 333333221 36899999976
Q ss_pred CC-CCCCCCccEEEecccc
Q 004164 127 SM-QFMDETFDVILDKGGL 144 (771)
Q Consensus 127 ~l-~~~~~sFDlVi~~~~l 144 (771)
++ .-...+||+|+.--.+
T Consensus 156 ~~L~~~~~~~DvIYlDPMF 174 (250)
T d2oyra1 156 TALTDITPRPQVVYLDPMF 174 (250)
T ss_dssp HHSTTCSSCCSEEEECCCC
T ss_pred HHHhccCCCCCEEEECCCC
Confidence 64 3235679999964444
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.21 E-value=0.11 Score=47.20 Aligned_cols=96 Identities=22% Similarity=0.269 Sum_probs=62.5
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC------CCCCCCccE
Q 004164 67 SPPPQILVPGC-G-NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM------QFMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGC-G-~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l------~~~~~sFDl 137 (771)
+++++||-+|| | .|.++..+++. |...|+++|.++.-++.+++ + +.. .++..+-.+. ....+.||+
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~-~---Ga~-~~i~~~~~~~~~~~~~~~~~~~~d~ 100 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-A---GAD-YVINASMQDPLAEIRRITESKGVDA 100 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-H---TCS-EEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH-c---CCc-eeeccCCcCHHHHHHHHhhcccchh
Confidence 68899999997 3 55666666654 77799999999987775543 2 111 1222111111 012356999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|++... -...++...+.++|||+++++.+.
T Consensus 101 vid~~g-------------~~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 101 VIDLNN-------------SEKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEESCC-------------CHHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhcccc-------------cchHHHhhhhhcccCCEEEEeccc
Confidence 997321 125677788999999999888654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.18 Score=45.93 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcC--CcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCC
Q 004164 66 SSPPPQILVPGC--GNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDET 134 (771)
Q Consensus 66 ~~~~~~ILDiGC--G~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~s 134 (771)
..++++||..|+ |.|..+..+++. |. ++++++-++.-++.+++ + +.. .+ .|..+.. .....
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~-~---Ga~-~v--i~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ-N---GAH-EV--FNHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-T---TCS-EE--EETTSTTHHHHHHHHHCTTC
T ss_pred CCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc-c---Ccc-cc--cccccccHHHHhhhhhccCC
Confidence 368999999997 567777788876 66 89999989876665532 2 211 11 2333322 23467
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
||+|++... ...+....+.|+|+|+++.+-
T Consensus 98 ~d~v~d~~g--------------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 98 IDIIIEMLA--------------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEEEESCH--------------HHHHHHHHHHEEEEEEEEECC
T ss_pred ceEEeeccc--------------HHHHHHHHhccCCCCEEEEEe
Confidence 999997321 145788889999999999864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.84 E-value=0.15 Score=44.33 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=42.4
Q ss_pred cEEEEecc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchH--HHHHhh
Q 004164 544 KAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI--KFVREM 607 (771)
Q Consensus 544 ~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~--~~l~~~ 607 (771)
+|+++|+| |-.++..|.... ..|.+||.||+.++-+++.|+ ..++.||+. +++++.
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~~~~~------~~vi~Gd~~~~~~l~~~ 61 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAEID------ALVINGDCTKIKTLEDA 61 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCS------SEEEESCTTSHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CCcceecCChhhhhhhhhhhh------hhhccCcccchhhhhhc
Confidence 68999987 336666666542 589999999999998877765 478899987 556554
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.63 E-value=0.15 Score=46.60 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=61.9
Q ss_pred CCCCeEEEEcCCcchhH-HHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCCccE
Q 004164 67 SPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls-~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFDl 137 (771)
+|+++||-+|||...+. ..+++. |...|+++|.++.-++.+++. +. -.++ |..+.+ .....+|+
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga-~~~i--~~~~~~~~~~~~~~~~~g~d~ 103 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA-DHVV--DARRDPVKQVMELTRGRGVNV 103 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC-SEEE--ETTSCHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc-ceee--cCcccHHHHHHHhhCCCCceE
Confidence 57899999999875444 556554 777999999999777655432 11 1222 222211 12346999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|++.-. . ...++...+.|++||+++++-+.
T Consensus 104 vid~~g-----~--------~~~~~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 104 AMDFVG-----S--------QATVDYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp EEESSC-----C--------HHHHHHGGGGEEEEEEEEECCCS
T ss_pred EEEecC-----c--------chHHHHHHHHHhCCCEEEEEeCc
Confidence 986321 1 25688899999999999987643
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.06 E-value=0.39 Score=43.71 Aligned_cols=101 Identities=19% Similarity=0.321 Sum_probs=68.4
Q ss_pred CCCcEEEEeccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.|.+|+|||.|. |.-+.-....+. ..|++.|.+++.++..+..|+ .++.....+-...-+..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~~~~~l~~l~~~~~----~~~~~~~~~~~~l~~~~------------ 93 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVERLSYLETLFG----SRVELLYSNSAEIETAV------------ 93 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHG----GGSEEEECCHHHHHHHH------------
T ss_pred CCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeCcHHHHHHHHHhhc----ccceeehhhhhhHHHhh------------
Confidence 578999999994 444444455553 699999999999998888875 34566666554443333
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
...|+||--+--+-. +++.+++.+.++. ++||.++| -+.
T Consensus 94 ---------------------~~aDivI~aalipG~------~aP~lIt~~mv~~----Mk~GSVIV-Dva 132 (168)
T d1pjca1 94 ---------------------AEADLLIGAVLVPGR------RAPILVPASLVEQ----MRTGSVIV-DVA 132 (168)
T ss_dssp ---------------------HTCSEEEECCCCTTS------SCCCCBCHHHHTT----SCTTCEEE-ETT
T ss_pred ---------------------ccCcEEEEeeecCCc------ccCeeecHHHHhh----cCCCcEEE-Eee
Confidence 347999985543321 5788999887654 56665554 443
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.14 Score=46.55 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=33.6
Q ss_pred CCCCcEEEEecc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh
Q 004164 540 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 540 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~ 584 (771)
....+|||+|.| .|.+...+.+.+ ..+|.+++.++.-++.|+++
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l 70 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM 70 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH
T ss_pred CCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc
Confidence 456789999987 445555555554 46899999999999999875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.70 E-value=0.18 Score=45.43 Aligned_cols=92 Identities=12% Similarity=0.217 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCCccE
Q 004164 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGCG~-G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFDl 137 (771)
+++++||-+|||. |.++..+++. |. +|+++|.++.-++.+++ + +.. .++ |..+.+ ...+.+++
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~-~---Ga~-~~i--~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARK-L---GAS-LTV--NARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH-T---TCS-EEE--ETTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhc-c---Ccc-ccc--cccchhHHHHHHHhhcCCccc
Confidence 6889999999976 5555666665 65 99999999988875543 2 211 222 222211 11223344
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|++.+. ...+....+.|++||+++++...
T Consensus 98 i~~~~~--------------~~~~~~~~~~l~~~G~iv~~G~~ 126 (166)
T d1llua2 98 LVTAVS--------------NSAFGQAIGMARRGGTIALVGLP 126 (166)
T ss_dssp EECCSC--------------HHHHHHHHTTEEEEEEEEECCCC
T ss_pred cccccc--------------chHHHHHHHHhcCCcEEEEEEec
Confidence 443221 25578888999999999887543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=91.69 E-value=0.21 Score=51.29 Aligned_cols=114 Identities=16% Similarity=0.101 Sum_probs=68.8
Q ss_pred CCeEEEEcCCcchhHHHHHhc------------C-----CCeEEEEcCCHHHHHHHHHHhhcCC---CC--cEEEEeecC
Q 004164 69 PPQILVPGCGNSRLSEHLYDA------------G-----FHGITNVDFSKVVISDMLRRNVRDR---SD--MRWRVMDMT 126 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~------------g-----~~~V~~vDiS~~~i~~~~~~~~~~~---~~--i~~~~~D~~ 126 (771)
.-+|.|+||..|..|..+... + .-+|.--|.-..--...-+...... ++ +.-+.+.+.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 368999999999887433321 1 0134445543333222222221111 11 222445555
Q ss_pred CCCCCCCCccEEEeccccccccCcccc--------------------------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELG--------------------------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~--------------------------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.--||+++.+++++..++||+.....+ ...+..+|+.=.+-|+|||+++++.++
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 545889999999999999998631100 013666777778888999999998877
Q ss_pred cc
Q 004164 181 ES 182 (771)
Q Consensus 181 ~~ 182 (771)
.+
T Consensus 212 r~ 213 (359)
T d1m6ex_ 212 RR 213 (359)
T ss_dssp CS
T ss_pred cC
Confidence 43
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.48 E-value=0.19 Score=45.69 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=63.0
Q ss_pred CCCCcEEEEecccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeE--EEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV--HITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v--~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+|||+|.|+. .+...+........|.+++.++.-.+.|+++ |. +.-+.. ...+..+.++...
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l-Ga--~~~i~~~~~~~~~~~~~~~~~-------- 95 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF-GA--TECINPQDFSKPIQEVLIEMT-------- 95 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH-TC--SEEECGGGCSSCHHHHHHHHT--------
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh-CC--cEEEeCCchhhHHHHHHHHHc--------
Confidence 45568999998744 4444555555556899999999999999874 53 111111 0123334444433
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
+..+|+||-- .+ ....++.+...++++|.+++-
T Consensus 96 -----------------------~~g~D~vid~--~G--------------~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 96 -----------------------DGGVDYSFEC--IG--------------NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp -----------------------TSCBSEEEEC--SC--------------CHHHHHHHHHTBCTTTCEEEE
T ss_pred -----------------------CCCCcEeeec--CC--------------CHHHHHHHHHhhcCCceeEEE
Confidence 2469998872 22 157788899999998776654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.20 E-value=0.14 Score=46.55 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC---CCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM---QFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~-G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l---~~~~~sFDlVi~~ 141 (771)
+++++||-+|||. |.++..+++. |. +++++|.++.-++.++ ++ +.. .++ |..+. ....+.||++++.
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~-~l---Gad-~~i--~~~~~~~~~~~~~~~D~vid~ 100 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAK-AL---GAD-EVV--NSRNADEMAAHLKSFDFILNT 100 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH-HH---TCS-EEE--ETTCHHHHHTTTTCEEEEEEC
T ss_pred CCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHh-cc---CCc-EEE--ECchhhHHHHhcCCCceeeee
Confidence 6899999999975 5666777776 66 7778998887766553 33 111 122 22221 1223579999864
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
-. .. ..+....+.|+++|+++++...
T Consensus 101 ~g-----~~--------~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1uufa2 101 VA-----AP--------HNLDDFTTLLKRDGTMTLVGAP 126 (168)
T ss_dssp CS-----SC--------CCHHHHHTTEEEEEEEEECCCC
T ss_pred ee-----cc--------hhHHHHHHHHhcCCEEEEeccC
Confidence 22 11 2367788999999999987543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.93 E-value=0.82 Score=40.96 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=70.7
Q ss_pred eEEEEcCCc-c-hhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 71 QILVPGCGN-S-RLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 71 ~ILDiGCG~-G-~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
+|+-||||. | .++..|.+.|+ .+|+++|.++..++.+++.. .+.....+... ..+...|+|+..-....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~dlIila~p~~~- 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-----IIDEGTTSIAK--VEDFSPDFVMLSSPVRT- 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-----SCSEEESCGGG--GGGTCCSEEEECSCHHH-
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh-----cchhhhhhhhh--hhccccccccccCCchh-
Confidence 689999986 2 34556666675 48999999999988775542 12222222222 12345799986433322
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCCC
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 206 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~ 206 (771)
...++.++.+.++++..++-+.-......+.+....... .+..|++.+.
T Consensus 75 ---------~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~-~i~~hPm~G~ 123 (171)
T d2g5ca2 75 ---------FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR-FVGGHPIAGT 123 (171)
T ss_dssp ---------HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG-EECEEEECCC
T ss_pred ---------hhhhhhhhhccccccccccccccccHHHHHHHHHhhccc-cccccccccc
Confidence 568899999999998766554444444444333333322 3445666544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.68 E-value=0.64 Score=41.95 Aligned_cols=47 Identities=28% Similarity=0.273 Sum_probs=35.1
Q ss_pred CCCCcEEEEecccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC
Q 004164 540 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 587 (771)
Q Consensus 540 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~ 587 (771)
....+||++|.|++ .+...+........|.++|.++.-++.|++ ||-
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-~GA 74 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-FGA 74 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTC
T ss_pred CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH-cCC
Confidence 45567999999875 344445555555689999999999999987 453
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.92 E-value=2.2 Score=38.23 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=35.6
Q ss_pred CCCCcEEEEeccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc
Q 004164 540 GKSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (771)
Q Consensus 540 ~~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F 585 (771)
....+|||+|.|++. +...+...+...+|.+++.++.-.+.|++..
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G 73 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 73 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence 445679999997663 4445555666679999999999999998874
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.87 E-value=0.44 Score=43.25 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=61.9
Q ss_pred CCCCcEEEEecccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
....+||+.|.||| .+...+.+... .+|.+++.+++-.+.+++. |- +.-+.....|-.+-+++..
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~~~~~~l-Ga--~~vi~~~~~d~~~~v~~~t--------- 93 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKA-GA--WQVINYREEDLVERLKEIT--------- 93 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH-TC--SEEEETTTSCHHHHHHHHT---------
T ss_pred CCCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHHHHHHhc-CC--eEEEECCCCCHHHHHHHHh---------
Confidence 34568999987764 44555555543 6999999999999999875 53 2222212234555555544
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
.+..+|+|+ |.-. .+.+......|+++|.+++
T Consensus 94 ---------------------~g~g~d~v~-d~~g----------------~~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 94 ---------------------GGKKVRVVY-DSVG----------------RDTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp ---------------------TTCCEEEEE-ECSC----------------GGGHHHHHHTEEEEEEEEE
T ss_pred ---------------------CCCCeEEEE-eCcc----------------HHHHHHHHHHHhcCCeeee
Confidence 135688754 4322 2346778889999998764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=89.63 E-value=0.77 Score=41.03 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=58.2
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 70 PQILVPGCGN--SRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 70 ~~ILDiGCG~--G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
.+|.-||+|. +.++..|.+.|+ +|++.|.++..++.+++.. .+.....+... -...|+|+..-...
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~-----~~~~~~~~~~~----~~~~DiIilavp~~-- 68 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQ-----LVDEAGQDLSL----LQTAKIIFLCTPIQ-- 68 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT-----SCSEEESCGGG----GTTCSEEEECSCHH--
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhh-----ccceeeeeccc----ccccccccccCcHh--
Confidence 3688899984 455667777788 9999999998887664432 11112222222 14579998532211
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..+.+++++...|+++-.++-..
T Consensus 69 --------~~~~vl~~l~~~l~~~~iv~~~~ 91 (165)
T d2f1ka2 69 --------LILPTLEKLIPHLSPTAIVTDVA 91 (165)
T ss_dssp --------HHHHHHHHHGGGSCTTCEEEECC
T ss_pred --------hhhhhhhhhhhhcccccceeecc
Confidence 26789999999999987665443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=89.53 E-value=0.26 Score=48.85 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=48.2
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~ 113 (771)
...+.+.+.+... .+++.|||.=||+|..+......|. +.+|+|+++..++.+++|...
T Consensus 236 P~~L~~rlI~~~s----~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 236 PAKLPEFFIRMLT----EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CTHHHHHHHHHHC----CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred chHHHHHhhhhcc----cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 3355555666655 4899999999999999988888887 999999999999988877643
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=89.45 E-value=0.53 Score=48.30 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--------CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--------GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVI 138 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--------g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlV 138 (771)
++...|+|+|+|+|.++..+... -..+++.++.|+...+..++.. ....++.|+ .++..++ ...-+|
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l-~~~~~i~w~-~~~~~~~---~~~g~i 152 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL-AGIRNIHWH-DSFEDVP---EGPAVI 152 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS-TTCSSEEEE-SSGGGSC---CSSEEE
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh-cccccceec-cChhhcc---cCCeEE
Confidence 34568999999999999777553 1236899999998776554444 333455553 3444443 223799
Q ss_pred EeccccccccC
Q 004164 139 LDKGGLDALME 149 (771)
Q Consensus 139 i~~~~l~~l~~ 149 (771)
+++..+|+++.
T Consensus 153 iaNE~fDAlPv 163 (365)
T d1zkda1 153 LANEYFDVLPI 163 (365)
T ss_dssp EEESSGGGSCC
T ss_pred EecccCccccc
Confidence 99999999975
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=89.32 E-value=0.16 Score=46.41 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCcchh-HHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRL-SEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~l-s~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
+..+|+-||+|.-.+ +...+.. |. +|+.+|.++..+++...... .++.+...+-..+.-.-...|+||..-.+-
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~---~~~~~~~~~~~~l~~~~~~aDivI~aalip 106 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFG---SRVELLYSNSAEIETAVAEADLLIGAVLVP 106 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhc---ccceeehhhhhhHHHhhccCcEEEEeeecC
Confidence 568999999998544 4555544 55 99999999999987765542 345665554444322224689999755443
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
.-..+. -+=+++.+.+|||..++
T Consensus 107 G~~aP~-------lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 107 GRRAPI-------LVPASLVEQMRTGSVIV 129 (168)
T ss_dssp TSSCCC-------CBCHHHHTTSCTTCEEE
T ss_pred CcccCe-------eecHHHHhhcCCCcEEE
Confidence 322222 23467888999998755
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=89.28 E-value=0.37 Score=46.09 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=46.0
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhh
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV 112 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~ 112 (771)
.+...+.+... .+++.|||.=||+|..+....+.|- +.+|+|+++..++.+++|..
T Consensus 200 ~L~~~lI~~~s----~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS----NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC----CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC----CCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 44445555554 4899999999999999988888776 99999999999999988763
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.92 Score=43.91 Aligned_cols=78 Identities=13% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCcc---hhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC----------CCC
Q 004164 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ----------FMD 132 (771)
Q Consensus 68 ~~~~ILDiGCG~G---~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~----------~~~ 132 (771)
++..+|-.|++.| ..+..|++.|+ +|+.+|.++..++.+.+.....+ .++.++.+|+.+.. -.-
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678999999887 34567777798 89999999999998877766554 35778899998742 112
Q ss_pred CCccEEEecccccc
Q 004164 133 ETFDVILDKGGLDA 146 (771)
Q Consensus 133 ~sFDlVi~~~~l~~ 146 (771)
+..|+++.+.....
T Consensus 88 g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 88 SGVDICINNAGLAR 101 (257)
T ss_dssp CCCSEEEECCCCCC
T ss_pred CCCCEEEecccccC
Confidence 57899997655543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.10 E-value=0.53 Score=42.08 Aligned_cols=92 Identities=12% Similarity=0.159 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCCcch-hHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCCccE
Q 004164 67 SPPPQILVPGCGNSR-LSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~-ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFDl 137 (771)
.|+++||-.|||+-. .+..+++. |. +|+++|.++.-++.+++ + + .... .|-.+.+ ...+.+|+
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~-~---G--a~~~-~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE-L---G--ADLV-VNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH-T---T--CSEE-ECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh-c---C--ccee-cccccchhhhhcccccCCCceE
Confidence 588999999998744 44555555 55 89999999988775533 2 2 1222 1222111 11233444
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|++.+ ....+....+.|++||++++....
T Consensus 98 v~~~~--------------~~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 98 VVTAV--------------SKPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp EESSC--------------CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred EeecC--------------CHHHHHHHHHHhccCCceEecccc
Confidence 44321 125688999999999999887644
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.01 E-value=0.82 Score=41.93 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=61.5
Q ss_pred CCCcEEEEec--cccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGL--GAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGl--G~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....|||.|. |.|..+..+.+.+....|.++.-.++-.....+.+|. +.-+.....|..+.+++..
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga--d~vi~~~~~~~~~~~~~~~---------- 97 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF--DAAVNYKTGNVAEQLREAC---------- 97 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC--SEEEETTSSCHHHHHHHHC----------
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc--eEEeeccchhHHHHHHHHh----------
Confidence 3367999885 4557777777877655677666555444444455554 3223333345566666654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
...+|+|+- .- . .+.++...+.|+++|.++.
T Consensus 98 ---------------------~~GvDvv~D-~v-----G-----------g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 98 ---------------------PGGVDVYFD-NV-----G-----------GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp ---------------------TTCEEEEEE-SS-----C-----------HHHHHHHHTTEEEEEEEEE
T ss_pred ---------------------ccCceEEEe-cC-----C-----------chhHHHHhhhccccccEEE
Confidence 246999963 21 1 5678899999999999884
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.00 E-value=0.88 Score=41.06 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=62.0
Q ss_pred CCCCeEEEEcCC--cchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC--------CCCCc
Q 004164 67 SPPPQILVPGCG--NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF--------MDETF 135 (771)
Q Consensus 67 ~~~~~ILDiGCG--~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~--------~~~sF 135 (771)
+|+++||-.|+| .|.....+++. |. +|+++|.|+.-.+.+++. +.. ...|..+.++ ....+
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~l----Ga~---~vi~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhc----CCe---EEEECCCCCHHHHHHHHhCCCCe
Confidence 688999999776 46777888777 66 999999999888766432 111 1223333221 24678
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|+|++...- ..+......|+++|++++...
T Consensus 99 d~v~d~~g~--------------~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 99 RVVYDSVGR--------------DTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp EEEEECSCG--------------GGHHHHHHTEEEEEEEEECCC
T ss_pred EEEEeCccH--------------HHHHHHHHHHhcCCeeeeccc
Confidence 998874321 236788899999999877543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=88.91 E-value=0.34 Score=43.50 Aligned_cols=39 Identities=23% Similarity=0.106 Sum_probs=32.7
Q ss_pred cEEEEecc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh
Q 004164 544 KAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 544 ~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~ 584 (771)
||.+||+| |++++..|.+.. .+|+++|.+++.++.|++.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g--~~V~~~d~~~~~~~~a~~~ 42 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQSTCEKAVER 42 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT
T ss_pred EEEEEeecHHHHHHHHHHHHCC--CEEEEEECCchHHHHHHHh
Confidence 69999999 788888887653 5899999999999988764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=88.79 E-value=0.84 Score=41.12 Aligned_cols=93 Identities=20% Similarity=0.211 Sum_probs=60.4
Q ss_pred CcEEEEecccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC---C----CCCeeEEEcchHHHHHhhccCCcc
Q 004164 543 VKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---Q----DKSLKVHITDGIKFVREMKSSSAT 613 (771)
Q Consensus 543 ~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~---~----~~r~~v~i~Dg~~~l~~~~~~~~~ 613 (771)
+++.|||+|.. .++..|... +.+|.+++.++.-++..++.-... . ......+..|..+.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--------- 70 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV--------- 70 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH---------
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh---------
Confidence 57999999944 556666665 359999999999888877653211 0 111222334433332
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 614 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
...|+||+=+ +.....++++.++..|+++-+++
T Consensus 71 ---------------------------~~aD~iii~v-------------~~~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 71 ---------------------------KDADVILIVV-------------PAIHHASIAANIASYISEGQLII 103 (184)
T ss_dssp ---------------------------TTCSEEEECS-------------CGGGHHHHHHHHGGGCCTTCEEE
T ss_pred ---------------------------cCCCEEEEEE-------------chhHHHHHHHHhhhccCCCCEEE
Confidence 2379999822 12245889999999999887665
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=88.10 E-value=0.72 Score=39.60 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=36.9
Q ss_pred CcEEEEecc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchH
Q 004164 543 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI 601 (771)
Q Consensus 543 ~~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~ 601 (771)
++++|+|+| |-.++..|.... ..|++||.||+.++.+++.+ ..++++|+.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g--~~vvvid~d~~~~~~~~~~~-------~~~~~gd~~ 52 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINEEKVNAYASYA-------THAVIANAT 52 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCCEEEESCHHHHHHTTTTC-------SEEEECCTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEecCcHHHHHHHHHhC-------Ccceeeecc
Confidence 368899887 335666666653 58999999999999886543 367788886
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=88.08 E-value=1.3 Score=47.53 Aligned_cols=118 Identities=8% Similarity=-0.036 Sum_probs=69.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC----CC--------------CcEEEEEcCHHHHHHHHhhcCCCCC-----CCeeEE
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM----PF--------------VGIEAVELDLTMLNLAEDYFGFTQD-----KSLKVH 596 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~----p~--------------~~i~~VEiD~~v~~vA~~~Fg~~~~-----~r~~v~ 596 (771)
....+|+.-.+|+|++...+.+++ .. ..+.++|+|+....+|+-.+-+... ..-.+.
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~ 242 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 242 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence 345689999999997765443322 11 2589999999999999876533110 111222
Q ss_pred EcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCC---CCCCCcCCcCcccHHHH
Q 004164 597 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDS---SSGMTCPAADFVEGSFL 672 (771)
Q Consensus 597 i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~-~s~d~---~~g~s~pp~~f~~~~fl 672 (771)
.+|.+.- +. ....+||+||... ++... ......++..-.+.-|+
T Consensus 243 ~~~~l~~--d~------------------------------~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi 290 (524)
T d2ar0a1 243 LGNTLGS--DG------------------------------ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFM 290 (524)
T ss_dssp ESCTTSH--HH------------------------------HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHH
T ss_pred hhhhhhh--cc------------------------------cccccceeEEecCCccccccccchhhhccccccccHHHH
Confidence 3332211 00 0136799999844 11110 01111233344455699
Q ss_pred HHHHHccCCCcEEEEEe
Q 004164 673 LTVKDALSEQGLFIVNL 689 (771)
Q Consensus 673 ~~~~~~L~~~Gilv~Nl 689 (771)
+.+.+.|++||.+++=+
T Consensus 291 ~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 291 QHIIETLHPGGRAAVVV 307 (524)
T ss_dssp HHHHHHEEEEEEEEEEE
T ss_pred HHHHHhccccCcEEEEE
Confidence 99999999999877644
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.54 E-value=1.1 Score=40.17 Aligned_cols=95 Identities=15% Similarity=0.025 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcCCc-chhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCCcc
Q 004164 66 SSPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFD 136 (771)
Q Consensus 66 ~~~~~~ILDiGCG~-G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFD 136 (771)
.+|+++||-.|||. |.++..+++. |...|+++|.++.-++.++ ++ +. -.++..+-.... ...+.+|
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak-~l---Ga-~~~i~~~~~~~~~~~~~~~~~~~g~D 100 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EF---GA-TECINPQDFSKPIQEVLIEMTDGGVD 100 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HH---TC-SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH-Hh---CC-cEEEeCCchhhHHHHHHHHHcCCCCc
Confidence 37899999999973 3344555554 8779999999998877554 33 11 112211111110 1235699
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+|++.-.- ...++....++++||.++++.
T Consensus 101 ~vid~~G~-------------~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 101 YSFECIGN-------------VKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp EEEECSCC-------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred EeeecCCC-------------HHHHHHHHHhhcCCceeEEEE
Confidence 99973211 266788899999998877654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.36 E-value=1.3 Score=42.49 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCcc---hhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCC
Q 004164 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (771)
Q Consensus 68 ~~~~ILDiGCG~G---~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (771)
.+..+|--|++.| .++..|++.|. +|+.+|.++.-++...+.....+.++.++.+|+.+.. -..+.
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~ 84 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 84 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 5678888899887 45677788898 9999999999998888877777788999999999852 12357
Q ss_pred ccEEEeccccccccCc
Q 004164 135 FDVILDKGGLDALMEP 150 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~ 150 (771)
.|+++.+.........
T Consensus 85 idilinnag~~~~~~~ 100 (244)
T d1yb1a_ 85 VSILVNNAGVVYTSDL 100 (244)
T ss_dssp CSEEEECCCCCCCCCC
T ss_pred CceeEeeccccccccc
Confidence 8999987766655443
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=87.33 E-value=1.6 Score=43.20 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=70.8
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCC--------CCCCCCcc
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM--------QFMDETFD 136 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~----~~i~~~~~D~~~l--------~~~~~sFD 136 (771)
...|+.+|||-=.-...|...+...++-+|. +.+++.-++...+.+ .+..++..|+.+. .|..+.--
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 4567779999877665553222347888885 666653334443322 3457777887652 13334556
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+++..|++.++...+ ..++|+.+.....||+.+++...
T Consensus 169 l~i~EGvl~YL~~~~-----~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 169 AWLAEGLLMYLPATA-----QDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp EEEECSCGGGSCHHH-----HHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEEccccccCCHHH-----HHHHHHHHHHhCCCCCEEEEEec
Confidence 888899999987554 78999999999999999877543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.07 E-value=1.5 Score=42.09 Aligned_cols=79 Identities=10% Similarity=0.125 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCcc---hhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCC
Q 004164 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (771)
Q Consensus 68 ~~~~ILDiGCG~G---~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (771)
.+..+|-.|++.| ..+..|++.|. +|+.+|.++..++.+.+.....+.++.++.+|+.+.. -.-+.
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN 87 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 5678888898766 33455666687 9999999999998888877666778999999998742 11267
Q ss_pred ccEEEeccccccc
Q 004164 135 FDVILDKGGLDAL 147 (771)
Q Consensus 135 FDlVi~~~~l~~l 147 (771)
.|+++.+......
T Consensus 88 iDilvnnag~~~~ 100 (251)
T d2c07a1 88 VDILVNNAGITRD 100 (251)
T ss_dssp CCEEEECCCCCCC
T ss_pred ceeeeeccccccc
Confidence 9999976655443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=86.98 E-value=1.3 Score=40.19 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=63.7
Q ss_pred CCCCcEEEEecccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
.+..+|||.|.|+| .....|.+... .+|.++.-+++-.+.+++. |- +.-+.....|-.+.+.+..
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~-Ga--~~vi~~~~~~~~~~~~~~~--------- 94 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQI-GF--DAAFNYKTVNSLEEALKKA--------- 94 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TC--SEEEETTSCSCHHHHHHHH---------
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHHHHHHhh-hh--hhhcccccccHHHHHHHHh---------
Confidence 45578999998765 55556666664 5999999999999998876 42 2111111223334433332
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
....+|+||- . .+ .+.++...++|+++|.+++
T Consensus 95 ---------------------~~~Gvd~v~D-~-vG---------------~~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 95 ---------------------SPDGYDCYFD-N-VG---------------GEFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp ---------------------CTTCEEEEEE-S-SC---------------HHHHHHHGGGEEEEEEEEE
T ss_pred ---------------------hcCCCceeEE-e-cC---------------chhhhhhhhhccCCCeEEe
Confidence 1356999765 1 11 6688999999999998885
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=86.96 E-value=1.8 Score=39.07 Aligned_cols=97 Identities=18% Similarity=0.083 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcCCcchhH-HHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-------CCCCCCcc
Q 004164 66 SSPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-------QFMDETFD 136 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls-~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l-------~~~~~sFD 136 (771)
.+++++||-+|||...+. ..+++. |..+|+++|.++.-++.+++ + +. -.++...-.+. ....+.+|
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~-l---Ga-~~~i~~~~~d~~~~~~~~~~~~~G~d 99 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-L---GA-TECLNPKDYDKPIYEVICEKTNGGVD 99 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-T---TC-SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH-c---CC-cEEEcCCCchhHHHHHHHHhcCCCCc
Confidence 478999999999875444 445554 77799999999988876643 2 11 11221111111 12235689
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHcccc-CeEEEEEEcC
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS-GGKFVCLTLA 180 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkp-GG~~ii~~~~ 180 (771)
+|++.-.. ...+.+....+++ +|.++++-+.
T Consensus 100 ~vid~~g~-------------~~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 100 YAVECAGR-------------IETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp EEEECSCC-------------HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred EEEEcCCC-------------chHHHHHHHHHHHhcCceEEEEEe
Confidence 99863211 2456666666655 6999887754
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.54 E-value=0.81 Score=41.44 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=60.0
Q ss_pred CCCCcEEEEecc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
.+..+|||.|.. .|.+..-+...+. .++.++.-+++-.+.++++ |. +.-+...-.|-.+.+.+..
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~~~l~~~-Ga--~~vi~~~~~~~~~~v~~~t--------- 90 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRL-GV--EYVGDSRSVDFADEILELT--------- 90 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTT-CC--SEEEETTCSTHHHHHHHHT---------
T ss_pred CCCCEEEEECCCCCcccccchhhcccc-ccceeeecccccccccccc-cc--cccccCCccCHHHHHHHHh---------
Confidence 445689998853 3455555555543 5777777788888999874 43 2112212234445555543
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
.+..+|+|+- .- + .+.++.+.+.|+++|.++.
T Consensus 91 ---------------------~~~g~d~v~d-~~-g---------------~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 91 ---------------------DGYGVDVVLN-SL-A---------------GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp ---------------------TTCCEEEEEE-CC-C---------------THHHHHHHHTEEEEEEEEE
T ss_pred ---------------------CCCCEEEEEe-cc-c---------------chHHHHHHHHhcCCCEEEE
Confidence 1356999985 11 1 3457778899999999885
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.54 E-value=1.1 Score=43.63 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=74.1
Q ss_pred CCeE-EEEcCCcch---hHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCC
Q 004164 69 PPQI-LVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (771)
Q Consensus 69 ~~~I-LDiGCG~G~---ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (771)
+.+| |-=|++.|. .+..|++.+..+|+.++.++.-++.+.+.....+.++.++.+|+.+.. -.-+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 4566 555665552 335566653349999999999998888887777788999999998853 11257
Q ss_pred ccEEEeccccccccCcccc-hHH-----------HHHHHHHHHHccccCeEEEEEEc
Q 004164 135 FDVILDKGGLDALMEPELG-HKL-----------GNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~-~~~-----------~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.|+++.+..+......... ... .-.+.+.+...|+++|+++.+.-
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS 138 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 138 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 9999988765433222211 111 23456677788889999877653
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=86.14 E-value=4.4 Score=34.02 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=54.6
Q ss_pred CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCcee
Q 004164 565 FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVD 644 (771)
Q Consensus 565 ~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD 644 (771)
+.+|-+||=|+.+.+.-++++.- .+-++. ...+|.+.++... ..+||
T Consensus 3 ~~~ILiVDDd~~~~~~l~~~L~~-~g~~v~-~a~~~~~al~~~~-------------------------------~~~~d 49 (123)
T d1dbwa_ 3 DYTVHIVDDEEPVRKSLAFMLTM-NGFAVK-MHQSAEAFLAFAP-------------------------------DVRNG 49 (123)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHH-TTCEEE-EESCHHHHHHHGG-------------------------------GCCSE
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHh-------------------------------hcCCc
Confidence 45899999999999998888731 112343 4578888887765 25699
Q ss_pred EEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 645 ILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 645 vIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
+||+|+.=++.. -.++++.+++. .|+--++
T Consensus 50 lvi~D~~mp~~~-----------G~e~~~~lr~~-~~~~~iI 79 (123)
T d1dbwa_ 50 VLVTDLRMPDMS-----------GVELLRNLGDL-KINIPSI 79 (123)
T ss_dssp EEEEECCSTTSC-----------HHHHHHHHHHT-TCCCCEE
T ss_pred EEEEeccCcccc-----------chHHHHHHHhc-CCCCeEE
Confidence 999999766543 37889999875 4443333
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.84 E-value=2.2 Score=37.92 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=33.1
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh
Q 004164 540 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 540 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~ 584 (771)
....+|||+|.|+ |.+...+.+.+. .++.+++-++.-.+.|++.
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~G-a~~i~~~~~~~~~~~a~~l 73 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKAL 73 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHH
T ss_pred CCCCEEEEeccchHHHHHHHHhhccc-ccchhhccchhHHHHHhcc
Confidence 5567899999863 556666666664 5777999999999998764
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.75 E-value=1.5 Score=39.83 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=57.3
Q ss_pred CCCCCeEEEEcCCcchhH-HHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE-eecCCC------CCCCCCcc
Q 004164 66 SSPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV-MDMTSM------QFMDETFD 136 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls-~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~-~D~~~l------~~~~~sFD 136 (771)
.+++++||-+|||...+. ..+++. |..+|+++|.++.-++.+++.-. . .++. .|-... ......+|
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA----~-~~in~~~~~~~~~~~~~~~~g~G~d 101 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA----T-ECISPKDSTKPISEVLSEMTGNNVG 101 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC----S-EEECGGGCSSCHHHHHHHHHTSCCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC----c-EEECccccchHHHHHHHHhccccce
Confidence 368999999999875444 444444 77799999999998886644321 1 1111 111110 01235689
Q ss_pred EEEeccccccccCcccchHHHHHHHHH-HHHccccCeEEEEEEcC
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSE-VKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~-i~rvLkpGG~~ii~~~~ 180 (771)
+++....-. ..+.+ +..+++.+|+++++-..
T Consensus 102 ~vi~~~g~~-------------~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 102 YTFEVIGHL-------------ETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp EEEECSCCH-------------HHHHHHHTTSCTTTCEEEECSCC
T ss_pred EEEEeCCch-------------HHHHHHHHHhhcCCeEEEEEEcc
Confidence 888532111 33344 44455666999887654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=84.95 E-value=3 Score=40.03 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCcc---hhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------C---CCC
Q 004164 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------F---MDE 133 (771)
Q Consensus 68 ~~~~ILDiGCG~G---~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~---~~~ 133 (771)
.+..+|--|++.| ..+..|++.|. +|+.+|.++..++.+.+.....+.++.++.+|+.+.. . -.+
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~ 85 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 85 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 5788999998877 35677777888 8999999999999888877777778889999998742 0 124
Q ss_pred CccEEEecccccc
Q 004164 134 TFDVILDKGGLDA 146 (771)
Q Consensus 134 sFDlVi~~~~l~~ 146 (771)
..|+++.+.....
T Consensus 86 ~idilvnnAG~~~ 98 (259)
T d2ae2a_ 86 KLNILVNNAGIVI 98 (259)
T ss_dssp CCCEEEECCCCCC
T ss_pred CceEEEECCceec
Confidence 6899997765543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.64 E-value=0.75 Score=44.44 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD 114 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~ 114 (771)
.+...+.+... .+++.|||.=||+|..+.+....|- +.+|+|+++..++.+.+|....
T Consensus 195 ~L~~~~I~~~s----~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 195 AVIERLVRALS----HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHHS----CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred hHHHHHHHhhc----CCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 34444555544 4899999999999999988888777 9999999999999998887543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.35 E-value=2.5 Score=40.83 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCcc---hhHHHHHhcCCCeEEEEcCC-HHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCC
Q 004164 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFS-KVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDE 133 (771)
Q Consensus 68 ~~~~ILDiGCG~G---~ls~~La~~g~~~V~~vDiS-~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~ 133 (771)
.+.++|--|++.| .++..|++.|. +|+.+|.+ +..++...+.....+.++.++++|+.+.. -..+
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 95 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG 95 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence 4689999999877 46677788888 89998876 55666666666667788999999998742 1125
Q ss_pred CccEEEeccccccccCcccc-hHH-----------HHHHHHHHHHccccCeEEEEEE
Q 004164 134 TFDVILDKGGLDALMEPELG-HKL-----------GNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~-~~~-----------~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..|+++.+..........+. ... .-.+.+.+.+.|+.+|..+++.
T Consensus 96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 78999876655443322211 111 3344666777778777776654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.22 E-value=1.1 Score=40.46 Aligned_cols=90 Identities=20% Similarity=0.205 Sum_probs=58.9
Q ss_pred CCCCeEEEEcC--CcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCc
Q 004164 67 SPPPQILVPGC--GNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETF 135 (771)
Q Consensus 67 ~~~~~ILDiGC--G~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sF 135 (771)
+++++||-.|. |.|.++..+++. |. ++++++-++.-.+.+++ .+.. .. .|..+.+ .....|
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~----~Ga~-~v--i~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE-YV--GDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS-EE--EETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccc----cccc-cc--ccCCccCHHHHHHHHhCCCCE
Confidence 67899999873 456777777776 66 88888878766654432 2222 11 2323222 234679
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
|+|++.-. . ..+....++|+++|+++.+.
T Consensus 96 d~v~d~~g-----~---------~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 96 DVVLNSLA-----G---------EAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp EEEEECCC-----T---------HHHHHHHHTEEEEEEEEECS
T ss_pred EEEEeccc-----c---------hHHHHHHHHhcCCCEEEEEc
Confidence 99997432 1 45777889999999998863
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.17 E-value=0.37 Score=44.26 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCCCeEEEEcC--CcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCCC-CCCCCCccEEEe
Q 004164 67 SPPPQILVPGC--GNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 67 ~~~~~ILDiGC--G~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~--i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
+++++||--|+ |.|..+..|++. |. +|+++--|+.-.+.+++. +.. +.....+.... ....+.||+|++
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~l----Ga~~vi~~~~~~~~~~~~~~~~gvD~vid 104 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVL----GAKEVLAREDVMAERIRPLDKQRWAAAVD 104 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHT----TCSEEEECC---------CCSCCEEEEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhc----ccceeeecchhHHHHHHHhhccCcCEEEE
Confidence 46789999986 556777888876 66 899998887766655332 211 11111111111 224568999997
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.-. . ..+....++|++||+++++...
T Consensus 105 ~vg-----g---------~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 105 PVG-----G---------RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp CST-----T---------TTHHHHHHTEEEEEEEEECSCC
T ss_pred cCC-----c---------hhHHHHHHHhCCCceEEEeecc
Confidence 422 1 3388899999999999988755
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.05 E-value=1.9 Score=41.51 Aligned_cols=111 Identities=10% Similarity=0.067 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCCcc---hhHHHHHhcCCCeEEE-EcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCC
Q 004164 67 SPPPQILVPGCGNS---RLSEHLYDAGFHGITN-VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMD 132 (771)
Q Consensus 67 ~~~~~ILDiGCG~G---~ls~~La~~g~~~V~~-vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~ 132 (771)
-.+..+|-.|++.| ..+..|++.|+ +|+. .+-++..++.+.+.....+.++.++.+|+.+.. ..-
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 35789999997776 66677888898 6665 567777787777777677778999999998742 122
Q ss_pred CCccEEEeccccccccCcccc-hH-----------HHHHHHHHHHHccccCeEEEEEE
Q 004164 133 ETFDVILDKGGLDALMEPELG-HK-----------LGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~-~~-----------~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+..|+++.+....+..+.... .+ ..-.+.+.+...|+.+|..+++.
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 579999977666544432211 11 13345555666666666655543
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=83.86 E-value=7.4 Score=37.53 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=77.6
Q ss_pred HHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCC
Q 004164 556 PMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNG 634 (771)
Q Consensus 556 ~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (771)
|.+.+..+ +.-++..+|+.|.-.+.-++.|.- +.+++|+..||.+.+...-
T Consensus 94 P~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~--~~~~~v~~~DG~~~l~all-------------------------- 145 (271)
T d2oo3a1 94 PYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALL-------------------------- 145 (271)
T ss_dssp HHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHC--------------------------
T ss_pred HHHHHHhCCCCCceEEeecCHHHHHHHHHHhcc--CCCceEEcCchHHHHHhhC--------------------------
Confidence 33344443 456999999999999999998863 7899999999999998864
Q ss_pred CCCCCCCceeEEEEeC-CCCCCCCCCCcCCcCcccHHHHHHHHHcc--CCCcEEEEEeccCChhHHHHHHHHHHHhccc
Q 004164 635 NCTASNARVDILIIDV-DSPDSSSGMTCPAADFVEGSFLLTVKDAL--SEQGLFIVNLVSRSQATKDMVISRMKMVFNH 710 (771)
Q Consensus 635 ~~~~~~~~yDvIi~D~-~s~d~~~g~s~pp~~f~~~~fl~~~~~~L--~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 710 (771)
+ ...+=-+|++|- +.. ..+| ....+.+.+.+ -++|++++...--+....+.+++.|++.=+.
T Consensus 146 --P-P~~rRgLVLIDPpYE~---------k~ey--~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k 210 (271)
T d2oo3a1 146 --P-PPEKRGLIFIDPSYER---------KEEY--KEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSK 210 (271)
T ss_dssp --S-CTTSCEEEEECCCCCS---------TTHH--HHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSS
T ss_pred --C-CCCCceEEEecCCcCC---------HHHH--HHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCcc
Confidence 1 123446999963 111 1112 33344555555 3689999887666777777788888776543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.66 E-value=2.4 Score=38.55 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=59.4
Q ss_pred CCeEEEEc--CCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCCccEE
Q 004164 69 PPQILVPG--CGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFDVI 138 (771)
Q Consensus 69 ~~~ILDiG--CG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFDlV 138 (771)
+.+||-.| .|.|..+..+++. |...|++++-++.....+.+.. +.. ...|..+-+ .....+|+|
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~---gad---~vi~~~~~~~~~~~~~~~~~GvDvv 104 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL---GFD---AAVNYKTGNVAEQLREACPGGVDVY 104 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS---CCS---EEEETTSSCHHHHHHHHCTTCEEEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc---cce---EEeeccchhHHHHHHHHhccCceEE
Confidence 37899987 4778999999986 7767888888876555443332 211 222333221 123569999
Q ss_pred EeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 139 i~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++.-. ...+....+.|+++|+++++-
T Consensus 105 ~D~vG--------------g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 105 FDNVG--------------GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp EESSC--------------HHHHHHHHTTEEEEEEEEEC-
T ss_pred EecCC--------------chhHHHHhhhccccccEEEec
Confidence 96431 145888999999999998764
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.56 E-value=0.59 Score=46.07 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=46.0
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCC-CCCCCCCCCcC-CcCcc--
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD-SPDSSSGMTCP-AADFV-- 667 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~-s~d~~~g~s~p-p~~f~-- 667 (771)
.=++++||.++.|+.++ +.++|+|++|.- .........-. ...++
T Consensus 12 ~~~l~~GD~le~l~~l~-------------------------------~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~ 60 (320)
T d1booa_ 12 NGSMYIGDSLELLESFP-------------------------------EESISLVMTSPPFALQRKKEYGNLEQHEYVDW 60 (320)
T ss_dssp SEEEEESCHHHHGGGSC-------------------------------SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHH
T ss_pred CCEEEehhHHHHHhhCc-------------------------------cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHH
Confidence 45999999999999876 368999999751 11100000000 01111
Q ss_pred cHHHHHHHHHccCCCcEEEEEeccC
Q 004164 668 EGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 668 ~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
-.+.+..+++.|+|+|.+++|+...
T Consensus 61 ~~~~l~~~~rvLk~~G~i~i~~~~~ 85 (320)
T d1booa_ 61 FLSFAKVVNKKLKPDGSFVVDFGGA 85 (320)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHhCcccCcccccccch
Confidence 1456889999999999999998543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=83.45 E-value=0.26 Score=44.83 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=57.3
Q ss_pred CCCCeEEEEcC-Cc-chhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC---CCCCCccEEEe
Q 004164 67 SPPPQILVPGC-GN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---FMDETFDVILD 140 (771)
Q Consensus 67 ~~~~~ILDiGC-G~-G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~---~~~~sFDlVi~ 140 (771)
+|+++||-.|. |. |..+..+++. |. +|++++-++.-++.+++ + +... ..|..+.. -....+|+|++
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~-l---Ga~~---~i~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA-L---GAEE---AATYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH-T---TCSE---EEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc-c---ccce---eeehhhhhhhhhcccccccccc
Confidence 68999999984 43 5777777777 66 89999998876665533 2 2111 12322211 12356999997
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
... .. +....+.|+++|+++++-
T Consensus 98 ~~G------~~---------~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 98 VRG------KE---------VEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp CSC------TT---------HHHHHTTEEEEEEEEEC-
T ss_pred ccc------hh---------HHHHHHHHhcCCcEEEEe
Confidence 321 11 566788999999998764
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.91 E-value=2.4 Score=35.69 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=54.6
Q ss_pred CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCcee
Q 004164 565 FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVD 644 (771)
Q Consensus 565 ~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD 644 (771)
+.+|-+||=|+.+.+..++++.- .+-.+. ...||.+.++... ...||
T Consensus 1 nirILiVdDd~~~~~~l~~~L~~-~g~~v~-~a~~~~~al~~l~-------------------------------~~~~d 47 (122)
T d1kgsa2 1 NVRVLVVEDERDLADLITEALKK-EMFTVD-VCYDGEEGMYMAL-------------------------------NEPFD 47 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHH-TTCEEE-EESSHHHHHHHHH-------------------------------HSCCS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-CCCEEE-EEcchHHHHHHHH-------------------------------hhCcc
Confidence 36899999999999999999831 111233 5688888887765 25799
Q ss_pred EEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 645 ILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 645 vIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
+|++|+.-++.. ..++++.++..-..--++++
T Consensus 48 lillD~~mp~~~-----------g~~~~~~lr~~~~~~piI~l 79 (122)
T d1kgsa2 48 VVILDIMLPVHD-----------GWEILKSMRESGVNTPVLML 79 (122)
T ss_dssp EEEEESCCSSSC-----------HHHHHHHHHHTTCCCCEEEE
T ss_pred ccccccccccch-----------hHHHHHHHHhcCCCCcEEEE
Confidence 999998665432 36788888765433334443
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.77 E-value=2.6 Score=35.59 Aligned_cols=73 Identities=16% Similarity=0.341 Sum_probs=53.0
Q ss_pred CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEE--EcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCce
Q 004164 566 VGIEAVELDLTMLNLAEDYFGFTQDKSLKVH--ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARV 643 (771)
Q Consensus 566 ~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~--i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 643 (771)
.+|-+||=|+.+.+..++++.- ...+.++ ..||.+.++... ..+|
T Consensus 2 irILivDD~~~~~~~l~~~L~~--~~~~~~v~~a~~g~~al~~~~-------------------------------~~~~ 48 (123)
T d1dz3a_ 2 IKVCIADDNRELVSLLDEYISS--QPDMEVIGTAYNGQDCLQMLE-------------------------------EKRP 48 (123)
T ss_dssp EEEEEECSCHHHHHHHHHHHHT--STTEEEEEEESSHHHHHHHHH-------------------------------HHCC
T ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEECCHHHHHHHHH-------------------------------hcCC
Confidence 4788999999999999999852 2234433 568888877665 2569
Q ss_pred eEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCC
Q 004164 644 DILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ 682 (771)
Q Consensus 644 DvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~ 682 (771)
|+|++|+.=++-. -.++++.+++.....
T Consensus 49 dlillD~~mP~~d-----------G~e~~~~ir~~~~~~ 76 (123)
T d1dz3a_ 49 DILLLDIIMPHLD-----------GLAVLERIRAGFEHQ 76 (123)
T ss_dssp SEEEEESCCSSSC-----------HHHHHHHHHHHCSSC
T ss_pred CEEEEcCCCCCCC-----------HHHHHHHHHhcCCCC
Confidence 9999999666432 378999998866543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=82.19 E-value=4.7 Score=34.13 Aligned_cols=86 Identities=19% Similarity=0.101 Sum_probs=55.2
Q ss_pred CeEEEEcCCcchhHHHHHh----cCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----CCCCCccEEEec
Q 004164 70 PQILVPGCGNSRLSEHLYD----AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----FMDETFDVILDK 141 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~----~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----~~~~sFDlVi~~ 141 (771)
.+|+-+|+ |.++..+++ .|. +|+.+|.++..++.+.++. ...++.+|..+.. ..-...|.+++.
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhccc
Confidence 36777777 556555544 476 9999999998887665432 4678999998753 223567888852
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeE
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 173 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~ 173 (771)
..+++ ...+...+.+.+.+.-.
T Consensus 73 -----t~~d~-----~N~~~~~~~k~~~~~~i 94 (132)
T d1lssa_ 73 -----TGKEE-----VNLMSSLLAKSYGINKT 94 (132)
T ss_dssp -----CSCHH-----HHHHHHHHHHHTTCCCE
T ss_pred -----CCcHH-----HHHHHHHHHHHcCCceE
Confidence 12222 23455556667777733
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.92 E-value=1.5 Score=44.09 Aligned_cols=122 Identities=12% Similarity=0.198 Sum_probs=77.8
Q ss_pred cchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc-------------
Q 004164 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------------- 113 (771)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~------------- 113 (771)
.....+...+.+++.. .+...|+-+|||.=.....|.+. +...++=+|+.+.+-. +.+...
T Consensus 79 ~Rt~~id~~v~~Fl~~---~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~--K~~~i~~~~~l~~~l~~~~ 153 (328)
T d1rjda_ 79 LRTVGIDAAILEFLVA---NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVEL--KNSILRESEILRISLGLSK 153 (328)
T ss_dssp HHHHHHHHHHHHHHHH---CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHH--HHHHHHHSHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHH---CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHH--HHHHHHhchhhhhhccccc
Confidence 3444555566666654 45678999999998887777554 2225666776554433 222110
Q ss_pred ----------CCCCcEEEEeecCCCC---------CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEE
Q 004164 114 ----------DRSDMRWRVMDMTSMQ---------FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 174 (771)
Q Consensus 114 ----------~~~~i~~~~~D~~~l~---------~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ 174 (771)
..++-..+.+|+.+.. +.....-++++.+++.++...+ ..++++.+.+... +|.|
T Consensus 154 ~~~~~~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~-----~~~li~~~~~~f~-~~~~ 227 (328)
T d1rjda_ 154 EDTAKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNE-----SQLLINTIMSKFS-HGLW 227 (328)
T ss_dssp SCCCCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHH-----HHHHHHHHHHHCS-SEEE
T ss_pred cccccccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHH-----HHHHHHHHHHhCC-CceE
Confidence 1245677888887752 2334455899999999987554 6788888888775 5666
Q ss_pred EEEEcC
Q 004164 175 VCLTLA 180 (771)
Q Consensus 175 ii~~~~ 180 (771)
++-+..
T Consensus 228 i~YE~i 233 (328)
T d1rjda_ 228 ISYDPI 233 (328)
T ss_dssp EEEEEC
T ss_pred EEeccC
Confidence 666643
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=81.86 E-value=2.4 Score=35.66 Aligned_cols=78 Identities=21% Similarity=0.192 Sum_probs=55.4
Q ss_pred CcEEEEEcCHHHHHHHHhhcCCCCCCCeeE-EEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCcee
Q 004164 566 VGIEAVELDLTMLNLAEDYFGFTQDKSLKV-HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVD 644 (771)
Q Consensus 566 ~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v-~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD 644 (771)
.+|-+||=|+.+.+..++++.- ...+| ...||.+.++.... ...||
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~---~g~~v~~~~~~~~al~~l~~------------------------------~~~~d 49 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQ---LGAEVTVHPSGSAFFQHRSQ------------------------------LSTCD 49 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH---TTCEEEEESSHHHHHHTGGG------------------------------GGSCS
T ss_pred CEEEEEECCHHHHHHHHHHHHh---cCCCeEEECCHHHHHHHHHh------------------------------cCCCC
Confidence 5899999999999999999842 12333 45688888776541 24699
Q ss_pred EEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 645 ILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 645 vIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
+||+|+.-++.. -.++++.+++.-..-.++++
T Consensus 50 liilD~~lp~~~-----------G~el~~~ir~~~~~~pii~l 81 (118)
T d2b4aa1 50 LLIVSDQLVDLS-----------IFSLLDIVKEQTKQPSVLIL 81 (118)
T ss_dssp EEEEETTCTTSC-----------HHHHHHHHTTSSSCCEEEEE
T ss_pred EEEEeCCCCCCC-----------HHHHHHHHHhcCCCCcEEEE
Confidence 999999776543 27888888876444455554
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.79 E-value=0.65 Score=44.91 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=44.0
Q ss_pred eEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCC-CCCCCCCCCcCCcCcc--cHH
Q 004164 594 KVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD-SPDSSSGMTCPAADFV--EGS 670 (771)
Q Consensus 594 ~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~-s~d~~~g~s~pp~~f~--~~~ 670 (771)
.++++|.++.|++++ ++++|+|+.|-- .... .... -...++ ...
T Consensus 6 ~~~~~D~le~l~~l~-------------------------------d~SIDliitDPPYn~~~-~~~~-~~~~y~~~~~~ 52 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLP-------------------------------DDSVQLIICDPPYNIML-ADWD-DHMDYIGWAKR 52 (279)
T ss_dssp EEEECCHHHHHHTSC-------------------------------TTCEEEEEECCCSBCCG-GGGG-TCSSHHHHHHH
T ss_pred eEEechHHHHHhhCc-------------------------------CCCccEEEECCCCCCCc-cccc-CHHHHHHHHHH
Confidence 577899999999986 478999999751 1100 0000 011221 356
Q ss_pred HHHHHHHccCCCcEEEEEecc
Q 004164 671 FLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
++..+.+.|+|+|.+++|...
T Consensus 53 ~~~e~~rvLk~~G~~~~~~~~ 73 (279)
T d1eg2a_ 53 WLAEAERVLSPTGSIAIFGGL 73 (279)
T ss_dssp HHHHHHHHEEEEEEEEEEECS
T ss_pred HHHHHHHHhCCCccEEEecCc
Confidence 778899999999999998743
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=81.74 E-value=1.9 Score=41.50 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCcc---hhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCC
Q 004164 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDET 134 (771)
Q Consensus 68 ~~~~ILDiGCG~G---~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~s 134 (771)
.+..+|--|.+.| ..+..|++.|+ +|+.+|.++..++.+.+.....+.++.++.+|+.+.. -.-+.
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~ 88 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK 88 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5678888887766 23466667788 8999999999998888877777778999999998742 01157
Q ss_pred ccEEEeccccc
Q 004164 135 FDVILDKGGLD 145 (771)
Q Consensus 135 FDlVi~~~~l~ 145 (771)
.|+++.+....
T Consensus 89 iDilvnnAG~~ 99 (255)
T d1fmca_ 89 VDILVNNAGGG 99 (255)
T ss_dssp CCEEEECCCCC
T ss_pred CCEeeeCCcCC
Confidence 99999765544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=81.74 E-value=1.6 Score=39.94 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=34.8
Q ss_pred CCCcEEEEeccccHH-HHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC
Q 004164 541 KSVKAVVIGLGAGLL-PMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (771)
Q Consensus 541 ~~~~vLviGlG~G~l-~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg 586 (771)
.|.+|||||.|.-.+ +......+ .+.|++.|+++..++..+..++
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~ 73 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGG 73 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTC
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhc
Confidence 467999999995444 44444555 4699999999999999988874
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=81.62 E-value=0.39 Score=42.71 Aligned_cols=31 Identities=23% Similarity=0.083 Sum_probs=23.4
Q ss_pred cEEEEeccc--cHHHHHHHHhCCCCcEEEEEcCHH
Q 004164 544 KAVVIGLGA--GLLPMFLHECMPFVGIEAVELDLT 576 (771)
Q Consensus 544 ~vLviGlG~--G~l~~~L~~~~p~~~i~~VEiD~~ 576 (771)
||+|||+|. +.++..|.+.. .+|+.++.++.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G--~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCC--CceEEEEcCHH
Confidence 799999994 46666666653 48999988875
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=81.41 E-value=2 Score=38.49 Aligned_cols=96 Identities=17% Similarity=0.095 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcCCcchhH-HHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE-eecCCC------CCCCCCcc
Q 004164 66 SSPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV-MDMTSM------QFMDETFD 136 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls-~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~-~D~~~l------~~~~~sFD 136 (771)
.+++++||-+|||.+..+ ..++.. |...|+++|.++.-.+.+++.- .. ..+. .+..+. ....+.+|
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G----a~-~~i~~~~~~~~~~~~~~~~~~~G~D 100 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG----AT-ECVNPQDYKKPIQEVLTEMSNGGVD 100 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT----CS-EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC----Ce-eEEecCCchhHHHHHHHHHhcCCCC
Confidence 478999999999765433 344443 7679999999998777553322 11 1111 111111 02235799
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccC-eEEEEEEc
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTL 179 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpG-G~~ii~~~ 179 (771)
+|++..... ..+......+++| |.+++...
T Consensus 101 ~vid~~G~~-------------~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 101 FSFEVIGRL-------------DTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp EEEECSCCH-------------HHHHHHHHHBCTTTCEEEECSC
T ss_pred EEEecCCch-------------hHHHHHHHHHhcCCcceEEecC
Confidence 999743222 4466677788876 55555443
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.30 E-value=0.24 Score=44.03 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=32.3
Q ss_pred CCCCcEEEEeccccHHHH--HHHHhCCCCcEEEE--EcCHHHHHHHHhhc
Q 004164 540 GKSVKAVVIGLGAGLLPM--FLHECMPFVGIEAV--ELDLTMLNLAEDYF 585 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~--~L~~~~p~~~i~~V--EiD~~v~~vA~~~F 585 (771)
-+.++||+||+|.-++.+ .|.+. +++|++| |++|++..++.++.
T Consensus 11 l~gkrvLViGgG~va~~ka~~Ll~~--GA~VtVvap~~~~~l~~~~~~~~ 58 (150)
T d1kyqa1 11 LKDKRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPDLHKSIIPKFGKFI 58 (150)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEEECTTHHHHHCGGG
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHhcc
Confidence 356899999998765533 34444 3677777 88999999988775
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=80.75 E-value=2.8 Score=36.06 Aligned_cols=76 Identities=12% Similarity=0.196 Sum_probs=55.0
Q ss_pred CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEE--EcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCce
Q 004164 566 VGIEAVELDLTMLNLAEDYFGFTQDKSLKVH--ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARV 643 (771)
Q Consensus 566 ~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~--i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 643 (771)
.+|-+||=+|.+.+.-++.+.. .+.+.++ ..||.+.++... ...|
T Consensus 3 i~VLiVDD~~~~r~~l~~~L~~--~~~~~~v~~a~~~~~al~~~~-------------------------------~~~~ 49 (138)
T d1a04a2 3 ATILLIDDHPMLRTGVKQLISM--APDITVVGEASNGEQGIELAE-------------------------------SLDP 49 (138)
T ss_dssp EEEEEECSCHHHHHHHHHHHTT--CTTEEEEEEESSHHHHHHHHH-------------------------------HHCC
T ss_pred CEEEEECCCHHHHHHHHHHHHh--CCCcEEEEEECCHHHHHHHHH-------------------------------hcCC
Confidence 4799999999999999988853 2334433 679999887765 2569
Q ss_pred eEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 644 DILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 644 DvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
|+|++|+.-++.. --++++.+++. .|..-++
T Consensus 50 DlvllD~~mP~~~-----------G~el~~~ir~~-~~~~~vi 80 (138)
T d1a04a2 50 DLILLDLNMPGMN-----------GLETLDKLREK-SLSGRIV 80 (138)
T ss_dssp SEEEEETTSTTSC-----------HHHHHHHHHHS-CCCSEEE
T ss_pred CEEEEecCCCCCC-----------HHHHHHHHHhh-CCCCCEE
Confidence 9999999766432 27888999875 4444443
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.56 E-value=17 Score=32.78 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=27.6
Q ss_pred cEEEEecccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHh
Q 004164 544 KAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (771)
Q Consensus 544 ~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~ 583 (771)
+|.|||+|-= .++..+... +.+|.++|+|+..++.-.+
T Consensus 2 kI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln~ 41 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQ 41 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHT
T ss_pred EEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhcc
Confidence 6899999943 444455544 3589999999998886543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=80.48 E-value=0.69 Score=44.07 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=42.5
Q ss_pred eEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCC-CC--CCCCCCCcCCcCcc--c
Q 004164 594 KVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD-SP--DSSSGMTCPAADFV--E 668 (771)
Q Consensus 594 ~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~-s~--d~~~g~s~pp~~f~--~ 668 (771)
+++.||.+++|+.++ ++.+|+|+.|-- .. +...... ....++ .
T Consensus 6 ~i~~gDcle~l~~lp-------------------------------d~sVdliitdPPY~~~~~~~d~~~-~~~~y~~~~ 53 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVE-------------------------------NKSVQLAVIDPPYNLSKADWDSFD-SHNEFLAFT 53 (256)
T ss_dssp SEEECCHHHHHHHSC-------------------------------TTCEEEEEECCCCSSCSSGGGCCS-SHHHHHHHH
T ss_pred EEEeccHHHHHhhCc-------------------------------CCCcCEEEECCCCCCCcCcCcCCC-CHHHHHHHH
Confidence 699999999999976 367999999751 11 0000000 011111 2
Q ss_pred HHHHHHHHHccCCCcEEEEEec
Q 004164 669 GSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 669 ~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.++++.+.+.|+|+|.++++..
T Consensus 54 ~~~~~e~~rvLk~~g~~~~~~~ 75 (256)
T d1g60a_ 54 YRWIDKVLDKLDKDGSLYIFNT 75 (256)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHhhhccccCcccccccC
Confidence 3578899999999998887653
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=80.25 E-value=2.9 Score=37.64 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCc--chhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC------CCCCCCccE
Q 004164 67 SPPPQILVPGCGN--SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM------QFMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGCG~--G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l------~~~~~sFDl 137 (771)
+++++||-.|++. |..+..+++. |. +|++++-++.-++.+++. +.. ..+.-+-.+. ......+|+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~----Ga~-~vi~~~~~~~~~~~~~~~~~~Gvd~ 101 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQI----GFD-AAFNYKTVNSLEEALKKASPDGYDC 101 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCS-EEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhh----hhh-hhcccccccHHHHHHHHhhcCCCce
Confidence 6899999988854 5666777777 55 999999998777655332 211 1122111111 023456999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
|++.-. ...+++..+.|++||+++++-
T Consensus 102 v~D~vG--------------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 102 YFDNVG--------------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEESSC--------------HHHHHHHGGGEEEEEEEEECC
T ss_pred eEEecC--------------chhhhhhhhhccCCCeEEeec
Confidence 996321 156889999999999998864
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.25 E-value=7.4 Score=36.69 Aligned_cols=75 Identities=15% Similarity=0.260 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCcc---hhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC------CCCCCccEE
Q 004164 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------FMDETFDVI 138 (771)
Q Consensus 68 ~~~~ILDiGCG~G---~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~------~~~~sFDlV 138 (771)
.+.++|-.|++.| ..+..|++.|. +|+.+|.++.-++...+.. +.+.+++.|+.+.. -.-++.|++
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~g~iDil 80 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC----PGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence 5789999999887 55677788898 8999999998887665443 46888999998742 122579999
Q ss_pred Eeccccccc
Q 004164 139 LDKGGLDAL 147 (771)
Q Consensus 139 i~~~~l~~l 147 (771)
+.+......
T Consensus 81 VnnAg~~~~ 89 (244)
T d1pr9a_ 81 VNNAAVALL 89 (244)
T ss_dssp EECCCCCCC
T ss_pred Eeccccccc
Confidence 977655443
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=80.06 E-value=2.1 Score=41.91 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=52.7
Q ss_pred CeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC-CCCccEEEeccccc
Q 004164 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM-DETFDVILDKGGLD 145 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~-~~sFDlVi~~~~l~ 145 (771)
.+|||+=||-|.++.-|-..|+..+.++|+++.+.+.. +.+ .+ -.....|+.++... -...|+++......
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~-~~N---~~-~~~~~~Di~~~~~~~~~~~dll~~g~PCq 72 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTY-ESN---HS-AKLIKGDISKISSDEFPKCDGIIGGPPCQ 72 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHH-HHH---CC-SEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHH-HHH---CC-CCCccCChhhCCHhHcccccEEeeccccc
Confidence 37999999999999999888996677999999888644 333 23 46678999987422 24689998654443
|