Citrus Sinensis ID: 004170

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770
MEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccHHHHHHHccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEccccccccccccHHHHHHHHHHHHHHHHcccccccccHHcccccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEcccccccHHHHHHHccccHccccccccHHHHHHHcccccHHHccHHHHHHHHHHHHcccHHHHHHHHcccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mepltaaqdvsivpdhkidkfeeygyagnnvkqddrslesktaltspklpepevvsgtenasplegsdsildanlpesaseitgenpidvepssfsnptdlgndgskfsrifsdsssissshapiePLAAVIsvssdttvepqilpkgdtetvaspstiknveqsekpllsgedssssmevhdlnkngssgtsvspsifpfsneketcdlnesnsssftespptgsssspagipapSVVSAALQvlpgkvlvpAVVDQVQGQALSALQVLKVIEAdvkpgdlcirREYARWLVSASStltrstmskvypamyienvtdlafdditpedpdfssiqgLAEAGLISsklshrdllneepgpifflpesplsrqDLVSWKMALEKRQLPEANKKILYQLSgfididkinpdawPALLADLTAGEQGIIALAFGctrlfqpdkpvtNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRwerqgikvvvdkdlreeSDAAVMWVNagkqfsvdqTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
mepltaaqdvsivpdhkIDKFEEYGYAgnnvkqddrslESKTaltspklpepevvSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSsdttvepqilpkgdtetvaspstiknveqsekPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWlvsasstltrstmskvYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESfekelsmerekidvVEKMAEEARQELerlraerevdkIALMKERAAIESEMEILSKLRREVEEQLeslmsnkveisyeKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKAlegardrwerqgikvvvdkdlrEESDAAVMWVNagkqfsvdqtvSRAQSLVDKLKAMandvsgkskEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLtegakrvagdcregvekltqrfkt
MEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGskfsrifsdsssisssHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNsssftespptgsssspagipapsvvsaaLQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIeaesaaenavsehsaLVAEVEKEINESFEKELSMEREKIDVVEKMaeearqelerlraereVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
*****************I*KFEEYGY*******************************************************************************************************************************************************************************************************************VVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITP*******IQGLAEAGLI**************GPIFFLPE**LSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG*********************************************************************************************************************************************************************************WERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKA*********************************************************
********************************************************************************************************************************************************************************************************************************************************KVLVPAVVDQVQGQALSALQVLKV****VKPGDLCIRREYARWLVSASSTLT***************V**LAFDDITPEDPDFSSIQGLAEAGLISSKLSH*****EEPGPIFFLPESPLSRQDLVSWKMALEKRQLPE****ILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAA****************************************************************************************************************************************************************************************************************************************************************************************************************************L******
********DVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTALTSP****************LEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFS*********APIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIK*********************************VSPSIFPFSNEKET*************************IPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIE*************ALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA***********************RWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
***************HKIDKFEEYG****************************************************************************************************EPLAAVISVSSDTTVEPQILPK*D****A********************************************************************************************PGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKL**********GPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRF**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSMAxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query770
255545258 976 conserved hypothetical protein [Ricinus 0.993 0.783 0.588 0.0
225464485 985 PREDICTED: uncharacterized protein LOC10 0.766 0.598 0.717 0.0
302143846 1040 unnamed protein product [Vitis vinifera] 0.766 0.567 0.717 0.0
224134861592 predicted protein [Populus trichocarpa] 0.722 0.939 0.719 0.0
356529194 975 PREDICTED: uncharacterized protein LOC10 0.822 0.649 0.653 0.0
224122346793 predicted protein [Populus trichocarpa] 0.725 0.704 0.706 0.0
356561542 1002 PREDICTED: uncharacterized protein LOC10 0.827 0.635 0.647 0.0
449446025722 PREDICTED: uncharacterized protein LOC10 0.7 0.746 0.732 0.0
222424656805 AT5G23890 [Arabidopsis thaliana] 0.922 0.881 0.557 0.0
15237846 946 uncharacterized protein [Arabidopsis tha 0.922 0.750 0.557 0.0
>gi|255545258|ref|XP_002513690.1| conserved hypothetical protein [Ricinus communis] gi|223547598|gb|EEF49093.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/848 (58%), Positives = 604/848 (71%), Gaps = 83/848 (9%)

Query: 1   MEPLTAAQDVSIVPDHKIDKFEEYGYA--GNNVKQDDRSLESKTALTSPKLPEPEVVSGT 58
           MEPLT  Q+VS+V D + DK E+   A    N+K++  SLE KT  T   LP    +  T
Sbjct: 134 MEPLTVQQEVSLVSDDEEDKIEKNTSAESSANLKEEYISLEHKTN-TDVDLPSSPQIEET 192

Query: 59  ENASPLEG-SDSILDA------------------------------------------NL 75
            N + L G +D +L A                                          NL
Sbjct: 193 HNENKLSGDTDQLLSADNGNYIISSNDTVDNAPVQEDLQYDSAFDSKLGVLETTPNSTNL 252

Query: 76  PESASEITGENPIDVEPSSFSNPTDLGNDGSK-----FSRIFSDSSSISSSHAPIEPLAA 130
           PES      +N ++ EP+   N  +   + ++          S  S +  S  P+  ++ 
Sbjct: 253 PESKIAKIDKNLVNGEPAYSLNIINTITEHTEAKENTIPSSDSSISPVLKSSEPV-VVST 311

Query: 131 VISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSS 190
            I+++SDT  E   L K   ++ AS  T + +  S   + S + +SSS+E++ L ++GSS
Sbjct: 312 SITLTSDTVSEVGNLFKDGMDSEASVPTKEELNTSTNQV-STDRNSSSLEMNYLTESGSS 370

Query: 191 GTSVSPS-IFPFSNEKETC---DLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVL 246
           G +      +PF+N+++     D+N S +SS  ESPP   S S AG+PAPS V  +LQV 
Sbjct: 371 GVTSVSEWAYPFANKQDIVANDDMNLSKTSS--ESPPFSGSFSSAGVPAPSAVPESLQVS 428

Query: 247 PGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSK 306
           PGK+LVPAVVDQ  GQAL+ALQVLKVIEADV+P DLC RREYARWLV+ASS L+RST+SK
Sbjct: 429 PGKILVPAVVDQTHGQALAALQVLKVIEADVQPSDLCTRREYARWLVAASSALSRSTLSK 488

Query: 307 VYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLN--EEPGPIFFLP 364
           VYPAMYIEN T+ AFDDITP+DPDFSSIQGLAEAGLISS+LS+ DLL+  E+ GP+ F P
Sbjct: 489 VYPAMYIENATEPAFDDITPDDPDFSSIQGLAEAGLISSRLSNHDLLSPVEDQGPLNFSP 548

Query: 365 ESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGI 424
           ESPLSRQDLVSWKMALEKRQLPEAN+KILYQLSGF D+DKI+PDAWPAL+ADL+AG+QGI
Sbjct: 549 ESPLSRQDLVSWKMALEKRQLPEANRKILYQLSGFRDVDKIHPDAWPALIADLSAGDQGI 608

Query: 425 IALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVA 484
           I+LAFGCTRLFQP+KPVT AQAAVALAIGEASD VNEEL RIEAES AENAVS H+ALVA
Sbjct: 609 ISLAFGCTRLFQPNKPVTKAQAAVALAIGEASDIVNEELARIEAESMAENAVSAHNALVA 668

Query: 485 EVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEM 544
           +VE++IN SFEKEL MEREKI+ VEKMAEEAR ELERLRAERE D  ALMKERA+IE+EM
Sbjct: 669 QVEQDINASFEKELLMEREKINAVEKMAEEARLELERLRAEREADNFALMKERASIEAEM 728

Query: 545 EILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 604
           E+LS+L+ EVEEQL++L+S+KVEISYEKERIN L+KEAENE QEI+RLQYELEVERKALS
Sbjct: 729 EVLSRLKGEVEEQLQTLLSSKVEISYEKERINKLQKEAENEKQEISRLQYELEVERKALS 788

Query: 605 MARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVD 664
           +ARAWAEDEAKRARE AK +E ARDRWERQGIKVVVD DLREE+ A   WV   +QFSV+
Sbjct: 789 IARAWAEDEAKRAREHAKVIEEARDRWERQGIKVVVDNDLREETSAGGTWVATARQFSVE 848

Query: 665 QTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDAT 724
            TVSRA+ LV +LK +A++  GKSKE+INTII KIL+ IS LK+W S+A  +A ELKDA 
Sbjct: 849 GTVSRAEKLVGELKLLADNARGKSKEVINTIIQKILVIISRLKEWISEARTQAGELKDAA 908

Query: 725 ILKAKGSVQE----------------------LQQSTAEFRSNLTEGAKRVAGDCREGVE 762
           +LKAK SV+E                      LQQSTAEF   + EGAKRVAGDCREGVE
Sbjct: 909 VLKAKESVEELQKNTSEFSSTIKERARGSIYGLQQSTAEFSFAMKEGAKRVAGDCREGVE 968

Query: 763 KLTQRFKT 770
           +LTQRFK+
Sbjct: 969 RLTQRFKS 976

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225464485|ref|XP_002271744.1| PREDICTED: uncharacterized protein LOC100264485 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143846|emb|CBI22707.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134861|ref|XP_002321923.1| predicted protein [Populus trichocarpa] gi|222868919|gb|EEF06050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356529194|ref|XP_003533181.1| PREDICTED: uncharacterized protein LOC100780360 [Glycine max] Back     alignment and taxonomy information
>gi|224122346|ref|XP_002318812.1| predicted protein [Populus trichocarpa] gi|222859485|gb|EEE97032.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356561542|ref|XP_003549040.1| PREDICTED: uncharacterized protein LOC100810148 [Glycine max] Back     alignment and taxonomy information
>gi|449446025|ref|XP_004140772.1| PREDICTED: uncharacterized protein LOC101215442 [Cucumis sativus] gi|449518413|ref|XP_004166236.1| PREDICTED: uncharacterized LOC101215442 [Cucumis sativus] Back     alignment and taxonomy information
>gi|222424656|dbj|BAH20282.1| AT5G23890 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15237846|ref|NP_197777.1| uncharacterized protein [Arabidopsis thaliana] gi|10176856|dbj|BAB10062.1| unnamed protein product [Arabidopsis thaliana] gi|332005846|gb|AED93229.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query770
TAIR|locus:2172853946 AT5G23890 [Arabidopsis thalian 0.925 0.753 0.516 5.7e-178
TAIR|locus:2156687761 AT5G52410 [Arabidopsis thalian 0.677 0.685 0.569 6.6e-149
TAIR|locus:2102375558 AT3G25680 "AT3G25680" [Arabido 0.497 0.686 0.343 2.9e-56
UNIPROTKB|G4N0Y1709 MGG_09571 "Uncharacterized pro 0.493 0.535 0.223 1.4e-05
UNIPROTKB|Q6GQ73 719 hook3 "Protein Hook homolog 3" 0.341 0.365 0.232 3.8e-05
MGI|MGI:2684999 1091 Tmf1 "TATA element modulatory 0.283 0.199 0.252 4.4e-05
UNIPROTKB|E1B7Q0 718 HOOK3 "Protein Hook homolog 3" 0.340 0.364 0.238 0.0001
UNIPROTKB|F1PQQ3 718 HOOK3 "Uncharacterized protein 0.340 0.364 0.238 0.0001
UNIPROTKB|Q86VS8 718 HOOK3 "Protein Hook homolog 3" 0.340 0.364 0.238 0.0001
UNIPROTKB|G3V9T2 1093 Tmf1 "Protein Tmf1" [Rattus no 0.283 0.199 0.252 0.00014
TAIR|locus:2172853 AT5G23890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
 Identities = 385/745 (51%), Positives = 500/745 (67%)

Query:    43 ALTSPKLPEPEVVSGTENASPLEGSDS--ILDANLPESASEITGENPIDVEPSSFSN--P 98
             A T P+  E E +  +E+ S L+ S    +LDA   ES++ +  EN    +P S  N  P
Sbjct:   217 AETDPETAESEKII-SESKSLLDSSTEPILLDA---ESSNLVGVENTNSEDPESLLNTEP 272

Query:    99 T---DLGNDGXXXXXXXXXXXXXXXXHAPIEPLAAVISVSS--DTTVEPQILPKGDTETV 153
             T   DL N                  +A    +  +  VSS  D+T +PQI+P  DTET 
Sbjct:   273 TNVSDLENHVNSQKEDSLSSLSGIDAYAASGTVTELPEVSSQLDSTSKPQIVPLNDTETA 332

Query:   154 -ASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLN- 211
              A+   +  V  + +   + + SS S    D++      +S SP   P S +    +LN 
Sbjct:   333 FATAEELSEVNGTPEYFETSDWSSIS----DIDTTKELESSKSP--VPESTDGSKDELNI 386

Query:   212 ESNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQVL--PGKVLVPAVVDQVQGQALSALQV 269
              S                             + V+  PGK+LVP   DQ+Q QA +ALQV
Sbjct:   387 YSQDELDDNRMLLEIPSGGSAFSSAGIPAPFMSVIVNPGKILVPVAADQIQCQAFAALQV 446

Query:   270 LKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDP 329
             LKVIE D +P DLC RREYARWL+SASS L+R+T SKVYPAMYIENVT+LAFDDITPEDP
Sbjct:   447 LKVIETDTQPSDLCTRREYARWLISASSALSRNTTSKVYPAMYIENVTELAFDDITPEDP 506

Query:   330 DFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEAN 389
             DFSSIQGLAEAGLI+SKLS+RDLL++  G   F PES LSRQDL+SWKMALEKRQLPEA+
Sbjct:   507 DFSSIQGLAEAGLIASKLSNRDLLDDVEGTFLFSPESLLSRQDLISWKMALEKRQLPEAD 566

Query:   390 KKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVA 449
             KK+LY+LSGFIDIDKINPDAWP+++ADL+ GEQGI ALAFGCTRLFQP KPVT  QAA+A
Sbjct:   567 KKMLYKLSGFIDIDKINPDAWPSIIADLSTGEQGIAALAFGCTRLFQPHKPVTKGQAAIA 626

Query:   450 LAIGEASDAVNEELQRIXXXXXXXXXXXXXXXLVAEVEKEINESFEKELSMEREKIDVVE 509
             L+ GEASD V+EEL RI               LVAEVEK++N SFEKELSMEREKI+ VE
Sbjct:   627 LSSGEASDIVSEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELSMEREKIEAVE 686

Query:   510 KMXXXXXXXXXXXXXXXXVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEIS 569
             KM                 + +AL+KERAA+ESEME+LS+LRR+ EE+LE LMSNK EI+
Sbjct:   687 KMAELAKVELEQLREKREEENLALVKERAAVESEMEVLSRLRRDAEEKLEDLMSNKAEIT 746

Query:   570 YEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARD 629
             +EKER+  LRKEAE E+Q I++LQYELEVERKALSMAR+WAE+EAK+AREQ +ALE AR 
Sbjct:   747 FEKERVFNLRKEAEEESQRISKLQYELEVERKALSMARSWAEEEAKKAREQGRALEEARK 806

Query:   630 RWERQGIKVVVDKDLRE----ESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS 685
             RWE  G++VVVDKDL+E    E++ +++ +N  ++ SV++T  RA++L+DKLK MA  VS
Sbjct:   807 RWETNGLRVVVDKDLQETSSRETEQSIV-LNEMERSSVEETERRAKTLMDKLKEMAGTVS 865

Query:   686 GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSN 745
             GKS+E+I T++ KI L+I+ LK++A     RA E++DA I++AKG+  +++Q T +    
Sbjct:   866 GKSREVIFTVMEKIRLWITVLKEYAVNLGKRAGEMRDAAIVRAKGAAADVEQGTVQ---- 921

Query:   746 LTEGAKRVAGDCREGVEKLTQRFKT 770
             +++  K++A +CR+GV K++QRFKT
Sbjct:   922 VSDKVKKMAEECRDGVGKISQRFKT 946
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2156687 AT5G52410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102375 AT3G25680 "AT3G25680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N0Y1 MGG_09571 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GQ73 hook3 "Protein Hook homolog 3" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
MGI|MGI:2684999 Tmf1 "TATA element modulatory factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1B7Q0 HOOK3 "Protein Hook homolog 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQQ3 HOOK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q86VS8 HOOK3 "Protein Hook homolog 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9T2 Tmf1 "Protein Tmf1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query770
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-08
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-07
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 9e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-06
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 9e-06
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 9e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-05
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 2e-05
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 3e-05
TIGR01843423 TIGR01843, type_I_hlyD, type I secretion membrane 4e-05
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 8e-05
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 9e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 2e-04
PRK12704 520 PRK12704, PRK12704, phosphodiesterase; Provisional 2e-04
pfam05262489 pfam05262, Borrelia_P83, Borrelia P83/100 protein 2e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 4e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 5e-04
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 5e-04
COG3096 1480 COG3096, MukB, Uncharacterized protein involved in 7e-04
COG4372 499 COG4372, COG4372, Uncharacterized protein conserve 8e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.001
TIGR02680 1353 TIGR02680, TIGR02680, TIGR02680 family protein 0.001
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 0.003
COG4372 499 COG4372, COG4372, Uncharacterized protein conserve 0.003
PTZ00491850 PTZ00491, PTZ00491, major vault protein; Provision 0.003
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 0.003
TIGR01069771 TIGR01069, mutS2, MutS2 family protein 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.004
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.004
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.004
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information 
 Score = 60.8 bits (148), Expect = 2e-09
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 456 SDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEA 515
             A+ ++L R+EAE             +A++ KE+ E  E E+    E+++  E+   EA
Sbjct: 728 ISALRKDLARLEAEVEQ------LEERIAQLSKELTE-LEAEIEELEERLEEAEEELAEA 780

Query: 516 RQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 575
             E+E L A+ E  K  L   R A++     L+ L  E     E L S +  I+  + R+
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

Query: 576 NMLRKEAENENQEIARLQY----------ELEVERKALSMARAWAEDEAKRAREQAKALE 625
             L ++ E  +++I  L            ELE E +AL   RA  E+     R + + L 
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

Query: 626 GARDRWERQ 634
                 E +
Sbjct: 901 EELRELESK 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 770
PF0039545 SLH: S-layer homology domain; InterPro: IPR001119 98.92
PF0039545 SLH: S-layer homology domain; InterPro: IPR001119 97.7
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.92
KOG0018 1141 consensus Structural maintenance of chromosome pro 95.47
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.55
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 93.89
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 93.73
PRK00106 535 hypothetical protein; Provisional 91.69
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 91.24
PF10186302 Atg14: UV radiation resistance protein and autopha 91.05
PRK00106 535 hypothetical protein; Provisional 90.89
COG4942420 Membrane-bound metallopeptidase [Cell division and 90.15
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 89.64
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 89.42
PRK12704 520 phosphodiesterase; Provisional 89.21
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 88.95
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 88.5
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 88.43
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 88.31
PF10186302 Atg14: UV radiation resistance protein and autopha 87.94
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 87.31
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 86.95
PRK11637428 AmiB activator; Provisional 86.24
PRK12704 520 phosphodiesterase; Provisional 86.15
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 85.79
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 85.6
PLN031881320 kinesin-12 family protein; Provisional 83.49
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 82.51
KOG0996 1293 consensus Structural maintenance of chromosome pro 81.85
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 81.8
PF09738302 DUF2051: Double stranded RNA binding protein (DUF2 80.96
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 80.27
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ] Back     alignment and domain information 
Probab=98.92  E-value=1.1e-09  Score=84.86  Aligned_cols=44  Identities=27%  Similarity=0.421  Sum_probs=31.4

Q ss_pred             CccCCCCCCCCh-HHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHH
Q 004170          320 AFDDITPEDPDF-SSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLV  374 (770)
Q Consensus       320 AF~DV~~sdPyf-~yIQaAAEAGIIsGklSG~~~~~~~dG~~tF~PD~PITRQELA  374 (770)
                      .|+||+..+|+| .+|+.|++.|||.|+.           +++|+|+++|||+|||
T Consensus         1 ~F~Dv~~~~~~~a~~i~~~~~~gi~~G~~-----------~~~f~P~~~iTR~e~A   45 (45)
T PF00395_consen    1 PFKDVPSISWAYAEAIQWLYQLGIISGYS-----------DGTFNPNDPITRAEAA   45 (45)
T ss_dssp             -BTTB-TTSSSTTHHHHHHHHTTSS---T-----------TS---TTSB-BHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHcCCcccCC-----------CCeECCCCCcCHHHhC
Confidence            599999999955 9999999999999883           2379999999999986

Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query770
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 6e-09
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-04
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 9e-06
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 2e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 5e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 6e-04
2qag_B427 Septin-6, protein NEDD5; cell cycle, cell division 8e-05
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 5e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 5e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 4e-04
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 5e-04
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 6e-04
3pyw_A203 S-layer protein SAP; SLH-domains, polysaccharide b 6e-04
2i1j_A575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 6e-04
1cii_A 602 Colicin IA; bacteriocin, ION channel formation, tr 9e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 69.1 bits (169), Expect = 4e-12
 Identities = 39/199 (19%), Positives = 90/199 (45%), Gaps = 8/199 (4%)

Query: 454  EASDAVNEELQRIEAE-SAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMA 512
            +    + ++  ++  E    E  VS+ +  +AE E++     + +   E    ++  ++ 
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049

Query: 513  EE--ARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISY 570
            +E  +RQELE+++ + E +   L ++ A +++++  L     + EE+L++ ++    +  
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA---RLED 1106

Query: 571  EKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDR 630
            E  + N   K+       I+ LQ +LE E+ A + A     D ++        LE   D 
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166

Query: 631  WERQGIKVVVDKDLREESD 649
               Q  + +   D +++ D
Sbjct: 1167 TATQ--QELRGSDYKDDDD 1183
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 Back     alignment and structure
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-2, protein structure initiative; 1.80A {Bacillus anthracis} Length = 203 Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 Back     alignment and structure
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query770
3pyw_A203 S-layer protein SAP; SLH-domains, polysaccharide b 99.96
4aq1_A 892 SBSB protein; structural protein, S-layer protein, 99.86
3pyw_A203 S-layer protein SAP; SLH-domains, polysaccharide b 99.82
4aq1_A 892 SBSB protein; structural protein, S-layer protein, 99.56
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 93.5
2no2_A107 HIP-I, huntingtin-interacting protein 1; clathrin 90.52
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 88.58
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 86.91
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 86.43
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 85.79
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 85.13
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 84.94
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 84.26
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 84.18
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 82.89
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis} Back     alignment and structure
Probab=99.96  E-value=2.1e-28  Score=237.60  Aligned_cols=168  Identities=20%  Similarity=0.205  Sum_probs=132.2

Q ss_pred             ccccC-CCccccccccchhhHHHHHhcccccccC-CCcCCCCCccHHHHHHHHHHhcccccccccccccccccccCCCCC
Q 004170          242 ALQVL-PGKVLVPAVVDQVQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDL  319 (770)
Q Consensus       242 a~~v~-~~rv~VPaa~D~~qIeaLaaLGILkgiE-~~F~Pn~pITRaEFArwLVRAln~L~R~p~~kI~P~~~i~~st~~  319 (770)
                      +|.|. .++    -+.+  .|+.|..+|+++|++ ++|+|+++|||+||+.||+++++.          +   .......
T Consensus         4 ~F~Dv~~~~----wa~~--~I~~l~~~gii~G~~dg~F~P~~~iTR~e~a~~l~r~~~~----------~---~~~~~~~   64 (203)
T 3pyw_A            4 TFPDVPADH----WGID--SINYLVEKGAVKGNDKGMFEPGKELTRAEAATMMAQILNL----------P---IDKDAKP   64 (203)
T ss_dssp             CBTTBCTTS----TTHH--HHHHHHHTTSCCCCTTSCCCTTCBCBHHHHHHHHHHHTTC----------C---CCTTCCC
T ss_pred             CCcCCCCCc----HHHH--HHHHHHHCcCEecCCCCeECCCCCchHHHHHHHHHHHhCC----------C---CCcCCCC
Confidence            45444 666    3444  899999999999997 699999999999999999999871          1   1123456


Q ss_pred             CccCCCCCCCChHHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHHHHHHH-HhccCCchhhHhhhhcccC
Q 004170          320 AFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMA-LEKRQLPEANKKILYQLSG  398 (770)
Q Consensus       320 AF~DV~~sdPyf~yIQaAAEAGIIsGklSG~~~~~~~dG~~tF~PD~PITRQELAawkva-Le~~~Lp~ad~k~l~~~~~  398 (770)
                      .|+||+ +||++.+|+.|+++|||.|+           +++ |+|+++|||+||+.|+++ +.+..   .. . ......
T Consensus        65 ~F~Dv~-~~w~~~~i~~a~~~Gii~g~-----------~~~-F~P~~~iTR~e~a~~l~r~~~~~~---~~-~-~~~~~~  126 (203)
T 3pyw_A           65 SFADSQ-GQWYTPFIAAVEKAGVIKGT-----------GNG-FEPNGKIDRVSMASLLVEAYKLDT---KV-N-GTPATK  126 (203)
T ss_dssp             SCGGGC-SSTTHHHHHHHHHTTSSCCC-----------SSC-CCTTSBCBHHHHHHHHHHHHTGGG---GS-S-SCCCCC
T ss_pred             CCCCCC-cHHHHHHHHHHHHCcCeecC-----------CCC-CCCCCcccHHHHHHHHHHHhcccc---cc-c-cccCCC
Confidence            899995 89999999999999999987           234 999999999999998874 43321   10 0 112457


Q ss_pred             ccccCCcCcchHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHHHHHHcc
Q 004170          399 FIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG  453 (770)
Q Consensus       399 F~DadkIs~~A~~AVa~dL~aGd~gII~~vfG~t~~FqPnkPVTRAEAAAaL~sG  453 (770)
                      |.|...| .|+.++|......|   |+   .|..+.|+|++++||+|+|++|++-
T Consensus       127 f~D~~~i-~wa~~~v~~~~~~G---i~---~g~~~~f~P~~~iTRaE~A~~l~r~  174 (203)
T 3pyw_A          127 FKDLETL-NWGKEKANILVELG---IS---VGTGDQWEPKKTVTKAEAAQFIAKT  174 (203)
T ss_dssp             CHHHHTC-SSSHHHHHHHHHTT---CS---CCCSSCCCTTSBCBHHHHHHHHHHH
T ss_pred             CCCCCcc-HHHHHHHHHHHHCc---CE---eCCCCCcCCCCCCcHHHHHHHHHHH
Confidence            9999999 89999998777654   55   3444589999999999999999954
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C Back     alignment and structure
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis} Back     alignment and structure
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 770
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 4e-06
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.003
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 9e-04
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 0.003
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00