Citrus Sinensis ID: 004180

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770
MADGEGDIRRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNTTTTTTTTANYNDLDSIIHRIKREEVSYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELESKDFQPRAKYRDEPHTLHGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRKFFSSTSNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKESELDAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNEKESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYESFSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNATEDSADDHIGLSNLNT
cccccccEEEEEEccccccccccccccEEEcccccccHHHHHHccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHccccccccccccccccccccccccc
cccccccEEEEEEEEccccccccccccEEEEcccccEEEcEEEcccccccccccccccccEEEccccccccccccccccccccccccccccHHccccccccccccccccccHHHHHHHEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEHcccccccHHHHHHHHHHHHccccccccccccHccccccccccccHEEEHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHEcccccccccHHHHHHHHHHHHHHHHHcccccccEEHHcccccccccccccccccccccccccHcccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHEEcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccEEEcccccccccccEEEEEEEcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccccccccccccccccccccc
madgegdirrlkckkcdnvgfecaydgfyycthcnalddeivetgvadedfmatgagtgtALYQASHarqvansrpanhfvplsqqssfwsplfdepnttttttttanyndldSIIHRIKreevsytdmvgptepqdfgssgpvkadyedyHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLAStgllsqgwadeAIVQSEsqeleskdfqprakyrdephtlhgQRAVMIWYKLLRQkiplssslAISFLACHVvreailptdivkwsiegkipyFAAFVEIEKRFgqtsvacslspsfmfrpsksvpsqkLESFAASIAESiglhlppvnFYALASRYLKQLCLPLGKILPRALKiqewsmppdlwlstnecrfptrVCVMSILIVSIRILYNINGfgawekslssrkffsstsniggkfdpecnskmrdeveeiscspssvigdsnakssknsshfkesELDAEALLYDLEARYndihdsvtyeyskdlptYLKYCKDVVfaglepphddpeEAIMIEKFWKFYQNEkeseaaedsgkrcgiaskrkrsrddlslgshykeseKIREKEFTTrlsasadyesfsgddypqqslngdnssksseeypnseaideASAETIIDSAVKRLKLdmennrfcyisprvqikRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDhclhltppsvtcrfcsdpvelaagdpicnatedsaddhiglsnlnt
madgegdirrlkckkcdnVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNTtttttttanyndldsIIHRIKREEVSYTDMVGptepqdfgssgpvKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSEsqeleskdfqprakyrdephtlhGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRKFFsstsniggkfdpECNSKMRDEVEEIscspssvigdsnakssknsshfkeSELDAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNEKeseaaedsgkrcgiaskrkrsrddlslgshykesekirekEFTTRLSASADYESFSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKldmennrfcyisprvqikrLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNatedsaddhiglsnlnt
MADGEGDIRRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNttttttttANYNDLDSIIHRIKREEVSYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELESKDFQPRAKYRDEPHTLHGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEkslssrkffsstsNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKeseldaeallydleaRYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNEKESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYESFSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNATEDSADDHIGLSNLNT
********RRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQA**************************************************IH***************************KADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIV************************LHGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFM**************FAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSL************************************************************EALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEP*****EEAIMIEKFWKFYQ*********************************************************************************************IIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICN*****************
******D***LKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTG**********************PLSQQSSFWSPLFDE**********ANYNDLDSIIHRIKREEVSYT***********************YHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLA******************************************************QKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSL***********IGGKFDPECNSKMRDEVEEISCSPSSV************SHFKESELDAEALLYDLEARYNDIH*********DLPTYLKYCKDVVFAGL*********AIMIEKFW*******************************************************SAD**********************************************RLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDP*************GLSNL**
********RRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNTTTTTTTTANYNDLDSIIHRIKREEVSYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQ***********QPRAKYRDEPHTLHGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRKFFSSTSNIGGKFDPECNSKMRDEVEEISCSPSSVI****************SELDAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNE************CGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYESFSGDDYPQQS******************IDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNATEDSADDHIGLSNLNT
*****GDIRRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDE*NTTTTTTTTANYNDLDSIIHRIKREEVSYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSES*********************HGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSS*****************************************************SELDAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNEKE****************************************************************************************TIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNAT***AD*HIGL*****
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MADGEGDIRRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNTTTTTTTTANYNDLDSIIHRIKREEVSYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELESKDFQPRAKYRDEPHTLHGQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRKFFSSTSNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKESELDAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWKFYQNEKESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYESFSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNATEDSADDHIGLSNLNT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query770 2.2.26 [Sep-21-2011]
Q5XVF0666 TATA box-binding protein- yes no 0.837 0.968 0.414 1e-147
Q5W770634 TATA box-binding protein- yes no 0.663 0.805 0.369 1e-105
B8AX23634 TATA box-binding protein- N/A no 0.663 0.805 0.369 1e-105
>sp|Q5XVF0|MEE12_ARATH TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Arabidopsis thaliana GN=MEE12 PE=1 SV=1 Back     alignment and function desciption
 Score =  523 bits (1346), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 306/738 (41%), Positives = 424/738 (57%), Gaps = 93/738 (12%)

Query: 13  CKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQ-- 70
           C +C+N  F+   DG+YYC  C    + +++TGV D D +  G GT  ALY   H R   
Sbjct: 3   CTECENDAFDEEDDGYYYCQRCGVQVENLIQTGVDDGDLIGEGGGTQGALYNPKHRRTEP 62

Query: 71  --VANSRPANHFVPLSQQSSFWSPLFDEPNTTTTTTTTANYNDLDSIIHRIKREEVSYTD 128
             +  S+P   F   + + S +   F+  N                +   +KR   SY D
Sbjct: 63  QPITPSQP--RFTDDTSRYSQFKSQFESENGNK------------ELPREVKRAPDSYVD 108

Query: 129 MVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVA 188
              PTEP DF +       YE+Y+ E R +YV    +MI  QC+ALVDKFNV PLI G+ 
Sbjct: 109 K-EPTEPVDFAAE---TLSYENYYDEARDRYVKAFLMMITYQCDALVDKFNVTPLIIGLV 164

Query: 189 ASIWFRFLASTGLLSQGWADEAIVQSE--SQELESKDFQPRAKYRDEPHTLHGQRAVMIW 246
             I  R++A +G+  + WA+ AI  SE  S++ E KD +   +++ EP  + G+RAV IW
Sbjct: 165 GPISLRYVALSGVYHKDWANNAIRDSEHQSEDGEVKDAKRLKRHKAEPRNIDGKRAVTIW 224

Query: 247 YKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSV 306
           + +L++ +PLSSSL ISFLACH     +LPTDIV+W+ EGK+PY + F++I ++ G+ S 
Sbjct: 225 FGILKKTMPLSSSLVISFLACHQAGAPVLPTDIVRWAREGKLPYLSCFLDIREQMGERSA 284

Query: 307 ACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKIL 366
           AC +  S M RP + + +Q LE+ A+ IA++IGL LPPVNFY +AS Y+KQL +P  KIL
Sbjct: 285 ACPVKVSIMARPFQVISAQMLEARASVIADTIGLPLPPVNFYGIASNYIKQLSIPEDKIL 344

Query: 367 PRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRKFF 426
             A  IQ WS+PP+L+LSTNE + P+RVCVMSILIV+IR+LYNING G WE+SL     F
Sbjct: 345 DLARLIQNWSLPPELYLSTNEQKLPSRVCVMSILIVAIRMLYNINGLGVWERSLG----F 400

Query: 427 SSTSNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKESELDAEALLYD 486
            + S+                            GDS   S       K +E D + LL +
Sbjct: 401 VNASD----------------------------GDSETNSGTAE---KATEFDTQELLKN 429

Query: 487 LEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAI-MIEKFWKFYQNEK 545
           LEA+Y+++  + T E  KDL +YL   K+  FAGLE   D P++   +++  W  Y  ++
Sbjct: 430 LEAKYHEVA-AETLESEKDLVSYLSLGKNEFFAGLE--EDSPDDTYRIVDNLWNGYPKDE 486

Query: 546 ESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYES-FSGDD 604
           + E             KR R  DD                     L+  + Y+S FS  +
Sbjct: 487 DIEC----------LPKRGRDWDD------------------DVSLNQLSLYDSRFSDGN 518

Query: 605 YPQQSLNGDNSSKS-SEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIK 663
            P  S +  N S S   +  +SE  + +S E + + A+KRL  DM ++ FCYI PRV++K
Sbjct: 519 NPCSSSSRRNESVSIGLDLSSSEHRESSSPEKLKEIAIKRLITDMGDDLFCYIPPRVKVK 578

Query: 664 RLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRI 723
           RLDYLQYVRK ++GAL YAAHADYYILLR CA +A++D+R+MH  VLSFERRLAW+EKRI
Sbjct: 579 RLDYLQYVRKKEDGALIYAAHADYYILLRVCAKVAEIDVRNMHRGVLSFERRLAWIEKRI 638

Query: 724 DHCLHLTPPSVTCRFCSD 741
           D  LHLT P +TC+ C D
Sbjct: 639 DQVLHLTRPLMTCKHCCD 656
Component of RNA polymerase I core factor complex that acts as a GTF2B/TFIIB-like factor and plays a key role in multiple steps during trancription initiation such as preinitiation complex (PIC) assembly and postpolymerase recruitment events in polymerase I (Pol I) transcription. Binds rDNA promoters and plays a role in Pol I recruitment (By similarity). Required for micropylar pollen tube guidance, but has no effect on ovule development and gametophytic cell fate specification.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5W770|TAF1B_ORYSJ TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza sativa subsp. japonica GN=Os05g0352700 PE=3 SV=2 Back     alignment and function description
>sp|B8AX23|TAF1B_ORYSI TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza sativa subsp. indica GN=OsI_19584 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query770
255562854751 conserved hypothetical protein [Ricinus 0.958 0.982 0.562 0.0
225425686722 PREDICTED: uncharacterized protein LOC10 0.912 0.973 0.535 0.0
147780094722 hypothetical protein VITISV_027088 [Viti 0.915 0.976 0.528 0.0
356541066719 PREDICTED: uncharacterized protein LOC10 0.920 0.986 0.487 0.0
296086368713 unnamed protein product [Vitis vinifera] 0.790 0.854 0.492 0.0
449518998735 PREDICTED: TATA box-binding protein-asso 0.906 0.949 0.486 0.0
449470354735 PREDICTED: TATA box-binding protein-asso 0.890 0.933 0.477 0.0
114053441664 hypothetical protein SDM1_2t00007 [Solan 0.840 0.974 0.437 1e-155
357473537653 hypothetical protein MTR_4g071660 [Medic 0.809 0.954 0.441 1e-154
22325438666 maternal effect embryo arrest 12 protein 0.837 0.968 0.414 1e-145
>gi|255562854|ref|XP_002522432.1| conserved hypothetical protein [Ricinus communis] gi|223538317|gb|EEF39924.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/774 (56%), Positives = 538/774 (69%), Gaps = 36/774 (4%)

Query: 4   GEGDIRRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALY 63
           GEG+ +R  C++C +VG E + DGFYYC  C A  D+I+ TGVADEDF+      G ALY
Sbjct: 5   GEGETKRWACRRCGHVGLEES-DGFYYCQECGAQADDIILTGVADEDFIEKDGEGGGALY 63

Query: 64  QASHARQVANSRPANHFVPLSQQSSFWSPLFDEPNTTTTTTTTANYNDLDSIIHRIKREE 123
            A   R    +R      P SQ    ++   ++ N TTTTT    Y+++     +IK+EE
Sbjct: 64  SARFTRYSQPTRTI-QTNPSSQAWFRYTQEEEDINFTTTTTLNGTYSNI-----KIKKEE 117

Query: 124 V----SYTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFN 179
                 Y D +GP EP+DFG        YEDY+ EVR++YVMGMQ MIQLQCE+LV+KFN
Sbjct: 118 RFDDDEYLDGLGPVEPEDFGGKS---LSYEDYYNEVRIRYVMGMQWMIQLQCESLVEKFN 174

Query: 180 VCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQ-ELESKDFQPRAKYRDEPHTLH 238
           V PLICGVA ++W RFL +TG+    WAD+ I++SESQ + E +D++PR+ +R+EPH  +
Sbjct: 175 VSPLICGVAGNVWLRFLVATGVFKDNWADDVILESESQVQGEPEDWKPRSSHRNEPHNAY 234

Query: 239 GQRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIE 298
           GQRAVM+W+K LR+ IPLSSSLAISFLACHV REAILPTDIV+WSIEGK+PYFAA VEIE
Sbjct: 235 GQRAVMVWFKYLRKTIPLSSSLAISFLACHVAREAILPTDIVRWSIEGKLPYFAAHVEIE 294

Query: 299 KRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQL 358
           KRF  +S AC +S S MFRPS++VP+QKLES AA+ AESIGLHLPPVNFY +ASRYLK L
Sbjct: 295 KRFEHSSPACPISSSLMFRPSQAVPAQKLESMAAAFAESIGLHLPPVNFYEIASRYLKNL 354

Query: 359 CLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEK 418
            LP+ KILP A +I EWSMPPDLWLSTNE R PTRV VMSILIV+IRILYN+NGFGAWE+
Sbjct: 355 ALPVEKILPHACRIYEWSMPPDLWLSTNELRLPTRVTVMSILIVAIRILYNLNGFGAWER 414

Query: 419 SLSSRKFFSSTSNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKESEL 478
           SLSS     S S+   + D  C S M+ + E  + SP   +  S  K  +N SH +  EL
Sbjct: 415 SLSSLNCSPSNSHPASRLDSMCRSVMQGDAE--TGSPFYSLDGSAEKFLRNPSHMQMPEL 472

Query: 479 DAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPH-DDPEEAIMIEKF 537
           D+  LL+ LE +YN I D+  YE++KDLP+YL+YCKDVVFAG  P H DD EE  ++EK 
Sbjct: 473 DSAELLHHLEVKYNFIADA--YEFTKDLPSYLQYCKDVVFAGAGPSHMDDLEEEELMEKL 530

Query: 538 WKFYQNEKESE-AAEDSGKRCGIASKRKRSR-DDLSLGSHYKESEKIREKEFTTRLSASA 595
           W FYQNEK+SE A E   +     S +KRSR DD S+  +  E EKI+E+      S SA
Sbjct: 531 WDFYQNEKDSELAKEPRTQSSSRLSNQKRSRNDDGSVFVNLSEKEKIKEEWHD---SPSA 587

Query: 596 DYESFSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCY 655
           D  S + D+   QS +  + S +S E  N E  ++ S +T+   A++RLKLDME NRFCY
Sbjct: 588 DISSHNADNSSHQSFDNGHFSNNSLEDQNVEHKEKDSEKTLEGRAIRRLKLDMEENRFCY 647

Query: 656 ISPRVQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERR 715
           I PRV +KR DYL YVRK DEGA TY AHADYYILLRACA +AQVDIR MH+ VLSFERR
Sbjct: 648 IPPRVNLKRFDYLHYVRKKDEGAFTYVAHADYYILLRACARVAQVDIRIMHIGVLSFERR 707

Query: 716 LAWLEKRIDHCLHLTPPSVTCRFCSDPVELAAGDPICNATEDSADDHIGLSNLN 769
           LAWLEKRID+CLHL+PP++TC FC D  +            +S DD IGLS LN
Sbjct: 708 LAWLEKRIDYCLHLSPPTITCEFCRDMPD-----------HNSNDDVIGLSKLN 750

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225425686|ref|XP_002269865.1| PREDICTED: uncharacterized protein LOC100241425 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147780094|emb|CAN73288.1| hypothetical protein VITISV_027088 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541066|ref|XP_003539004.1| PREDICTED: uncharacterized protein LOC100789168 [Glycine max] Back     alignment and taxonomy information
>gi|296086368|emb|CBI31957.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449518998|ref|XP_004166522.1| PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449470354|ref|XP_004152882.1| PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|114053441|gb|AAK91899.2|AC091627_12 hypothetical protein SDM1_2t00007 [Solanum demissum] Back     alignment and taxonomy information
>gi|357473537|ref|XP_003607053.1| hypothetical protein MTR_4g071660 [Medicago truncatula] gi|355508108|gb|AES89250.1| hypothetical protein MTR_4g071660 [Medicago truncatula] Back     alignment and taxonomy information
>gi|22325438|ref|NP_671769.1| maternal effect embryo arrest 12 protein [Arabidopsis thaliana] gi|75111159|sp|Q5XVF0.1|MEE12_ARATH RecName: Full=TATA box-binding protein-associated factor RNA polymerase I subunit B; AltName: Full=Central cell guidance protein; AltName: Full=Protein MATERNAL EFFECT EMBRYO ARREST 12; AltName: Full=TATA box-binding protein-associated factor 1B; Short=TBP-associated factor 1B gi|52354243|gb|AAU44442.1| hypothetical protein AT2G02955 [Arabidopsis thaliana] gi|330250550|gb|AEC05644.1| maternal effect embryo arrest 12 protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query770
TAIR|locus:504955973666 MEE12 "maternal effect embryo 0.507 0.587 0.447 3.3e-130
UNIPROTKB|Q5W770634 Os05g0352700 "TATA box-binding 0.423 0.514 0.404 1.9e-104
TAIR|locus:504955973 MEE12 "maternal effect embryo arrest 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 876 (313.4 bits), Expect = 3.3e-130, Sum P(2) = 3.3e-130
 Identities = 182/407 (44%), Positives = 249/407 (61%)

Query:    13 CKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQVA 72
             C +C+N  F+   DG+YYC  C    + +++TGV D D +  G GT  ALY   H R   
Sbjct:     3 CTECENDAFDEEDDGYYYCQRCGVQVENLIQTGVDDGDLIGEGGGTQGALYNPKHRR--T 60

Query:    73 NSRPANHFVPLSQQSSFWSPLFDEPNXXXXXXXXANYNDLDSIIHRIKREEVSYTDMVGP 132
               +P     P   Q  F     D            + N    +   +KR   SY D   P
Sbjct:    61 EPQP---ITP--SQPRFTD---DTSRYSQFKSQFESENGNKELPREVKRAPDSYVDKE-P 111

Query:   133 TEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIW 192
             TEP DF +       YE+Y+ E R +YV    +MI  QC+ALVDKFNV PLI G+   I 
Sbjct:   112 TEPVDFAAE---TLSYENYYDEARDRYVKAFLMMITYQCDALVDKFNVTPLIIGLVGPIS 168

Query:   193 FRFLASTGLLSQGWADEAIVQSE--SQELESKDFQPRAKYRDEPHTLHGQRAVMIWYKLL 250
              R++A +G+  + WA+ AI  SE  S++ E KD +   +++ EP  + G+RAV IW+ +L
Sbjct:   169 LRYVALSGVYHKDWANNAIRDSEHQSEDGEVKDAKRLKRHKAEPRNIDGKRAVTIWFGIL 228

Query:   251 RQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSL 310
             ++ +PLSSSL ISFLACH     +LPTDIV+W+ EGK+PY + F++I ++ G+ S AC +
Sbjct:   229 KKTMPLSSSLVISFLACHQAGAPVLPTDIVRWAREGKLPYLSCFLDIREQMGERSAACPV 288

Query:   311 SPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRAL 370
               S M RP + + +Q LE+ A+ IA++IGL LPPVNFY +AS Y+KQL +P  KIL  A 
Sbjct:   289 KVSIMARPFQVISAQMLEARASVIADTIGLPLPPVNFYGIASNYIKQLSIPEDKILDLAR 348

Query:   371 KIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWE 417
              IQ WS+PP+L+LSTNE + P+RVCVMSILIV+IR+LYNING G WE
Sbjct:   349 LIQNWSLPPELYLSTNEQKLPSRVCVMSILIVAIRMLYNINGLGVWE 395
GO:0005634 "nucleus" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
UNIPROTKB|Q5W770 Os05g0352700 "TATA box-binding protein-associated factor RNA polymerase I subunit B" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5XVF0MEE12_ARATHNo assigned EC number0.41460.83760.9684yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 770
PRK00423310 tfb transcription initiation factor IIB; Reviewed 98.64
PF1178136 RRN7: RNA polymerase I-specific transcription init 98.54
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.09
PF0827143 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 95.58
KOG1598521 consensus Transcription initiation factor TFIIIB, 94.63
smart0077837 Prim_Zn_Ribbon Zinc-binding domain of primase-heli 92.19
PF1276046 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int 90.39
PF0827430 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01 90.15
KOG1597308 consensus Transcription initiation factor TFIIB [T 90.08
PRK00420112 hypothetical protein; Validated 90.04
PF0827340 Prim_Zn_Ribbon: Zinc-binding domain of primase-hel 89.99
PF1324826 zf-ribbon_3: zinc-ribbon domain 88.44
PRK0043250 30S ribosomal protein S27ae; Validated 85.03
COG2824112 PhnA Uncharacterized Zn-ribbon-containing protein 83.17
smart0066152 RPOL9 RNA polymerase subunit 9. 82.69
PF09538108 FYDLN_acid: Protein of unknown function (FYDLN_aci 82.21
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information 
Probab=98.64  E-value=7e-06  Score=89.13  Aligned_cols=107  Identities=17%  Similarity=0.241  Sum_probs=80.1

Q ss_pred             hhHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHHHHHHHHHH
Q 004180          258 SSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAES  337 (770)
Q Consensus       258 ~TLAI~YLAcl~LR~PV~lsDLlRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~la~~ia~~  337 (770)
                      ...|.+|+||..-+.|.++-||.....   +                                  +.+.|.+.-..+.+.
T Consensus       167 i~AAclYiACR~~~~prtl~eI~~~~~---v----------------------------------~~k~i~~~~~~l~k~  209 (310)
T PRK00423        167 VVAAALYAACRRCKVPRTLDEIAEVSR---V----------------------------------SRKEIGRCYRFLLRE  209 (310)
T ss_pred             HHHHHHHHHHHHcCCCcCHHHHHHHhC---C----------------------------------CHHHHHHHHHHHHHH
Confidence            567999999999999999999976532   0                                  113455556666777


Q ss_pred             hCCCCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHHh
Q 004180          338 IGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRIL  407 (770)
Q Consensus       338 ~gL~fPpiN~~lLL~Ryl~eL~LP~E~iy~~v~RL~~fs~p~~l~~~~~~~~~Pe~V~LmA~IIVAlKLL  407 (770)
                      +++.+|+++..-++.||+..|+||.+ +...+..|++......+    ....-|. ..++|+|.+|.++.
T Consensus       210 L~~~~~~~~p~~~i~r~~~~L~L~~~-v~~~A~~i~~~a~~~~l----~~Gr~P~-sIAAAaIYlA~~~~  273 (310)
T PRK00423        210 LNLKLPPTDPIDYVPRFASELGLSGE-VQKKAIEILQKAKEKGL----TSGKGPT-GLAAAAIYIASLLL  273 (310)
T ss_pred             hCCCCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHhcCc----ccCCCHH-HHHHHHHHHHHHHh
Confidence            88889999999999999999999999 77778888763322111    1225577 78888888888874

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase Back     alignment and domain information
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc Back     alignment and domain information
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PRK00420 hypothetical protein; Validated Back     alignment and domain information
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4 Back     alignment and domain information
>PF13248 zf-ribbon_3: zinc-ribbon domain Back     alignment and domain information
>PRK00432 30S ribosomal protein S27ae; Validated Back     alignment and domain information
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism] Back     alignment and domain information
>smart00661 RPOL9 RNA polymerase subunit 9 Back     alignment and domain information
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query770
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.1 bits (142), Expect = 4e-09
 Identities = 92/588 (15%), Positives = 153/588 (26%), Gaps = 188/588 (31%)

Query: 217 QELESKDFQ--PRAKYRDE--------PHTLHGQRAVMIWYKLLRQKIPLSSSLAISFLA 266
              + KD Q  P++    E           + G    + W   L  K      +   F+ 
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-RLFW--TLLSK---QEEMVQKFV- 83

Query: 267 CHVVREAILPTD----IVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSV 322
                E +L  +    +     E + P     + IE+R    +     +   + R     
Sbjct: 84  -----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--- 135

Query: 323 PSQKLESFAASI--AESIGLH---------LPPVNFYALASRYLKQLCLPLGKILPRALK 371
           P  KL      +  A+++ +          +             K  C    KI      
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSYKVQCKMDFKIF----- 185

Query: 372 IQEWSMPPDLWLSTNECRFPTRVCVM-------------SILIVSIRILYNINGFGAWEK 418
                     WL+   C  P  V  M             S    S  I   I+   A  +
Sbjct: 186 ----------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 419 SLSSRKFFS---------STSNIGGKFDPECNSKM----RDEVEEISCSPSSVIGDSNAK 465
            L   K +            +     F+  C  K+    R            V    +  
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KILLTTRF---------KQVT---DFL 281

Query: 466 SSKNSSHFKESELDAEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPH 525
           S+  ++H                   +    ++T +  K L   LKY           P 
Sbjct: 282 SAATTTHI----------------SLDHHSMTLTPDEVKSL--LLKYLD-------CRPQ 316

Query: 526 DDPEEAI--------MIE----------KFWKFYQNEKESEAAEDSGKRCGIASKRKRSR 567
           D P E +        +I             WK    +K +   E S      A  RK   
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF- 375

Query: 568 DDLSLGSHYKESEKIREKEFTTRLSASADYESFSGDDYPQQSLNGDNSSKSSEEYPNSEA 627
           D LS+   +  S  I     +         +           +N  +     E+ P    
Sbjct: 376 DRLSV---FPPSAHIPTILLSLIWFDVIKSD-------VMVVVNKLHKYSLVEKQPKEST 425

Query: 628 IDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQYVRKSDEGALTYAAHADY 687
           I        I S    LK+ +EN         +    +D+    +  D   L    + D 
Sbjct: 426 IS-------IPSIYLELKVKLEN------EYALHRSIVDHYNIPKTFDSDDLI-PPYLDQ 471

Query: 688 YILLRACATIAQVDIRSMHMAVLSFERR----------LAWLEKRIDH 725
           Y      + I        H+  +    R            +LE++I H
Sbjct: 472 YF----YSHIGH------HLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query770
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 98.11
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 97.78
1ais_B200 TFB TFIIB, protein (transcription initiation facto 95.96
1c9b_A207 General transcription factor IIB; protein-DNA comp 95.64
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 94.43
1nui_A255 DNA primase/helicase; zinc-biding domain, toprim f 92.35
1pft_A50 TFIIB, PFTFIIBN; N-terminal domain, transcription 92.08
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 90.87
1vq8_Z83 50S ribosomal protein L37AE; ribosome 50S, protein 88.98
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 88.87
1dl6_A58 Transcription factor II B (TFIIB); zinc ribbon, ge 88.54
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 88.25
2ivx_A257 Cyclin-T2; transcription regulation, cell division 87.01
3j20_Y50 30S ribosomal protein S27AE; archaea, archaeal, KI 84.67
3k1f_M197 Transcription initiation factor IIB; RNA polymeras 83.69
1qyp_A57 RNA polymerase II; transcription, RPB9, Zn ribbon, 82.13
2k4x_A55 30S ribosomal protein S27AE; metal-binding, ribonu 80.57
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 80.17
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
Probab=98.11  E-value=1.6e-05  Score=86.02  Aligned_cols=146  Identities=11%  Similarity=0.070  Sum_probs=50.8

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCCCCchhhhhcccccccccccCcCcccCCCCCCccccchhhHHHHHHH
Q 004180          170 QCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELESKDFQPRAKYRDEPHTLHGQRAVMIWYKL  249 (770)
Q Consensus       170 Q~~aLI~~~G~ppELe~VVrdLWlRyL~~~~v~~~~~ad~~~~dsesqE~e~~sSq~~~~~~~e~~~~~~~Rk~~~wprl  249 (770)
                      .+..+...+|+|..+......|+.+.....-                                    ..|++...     
T Consensus       132 ~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~------------------------------------~rGrs~e~-----  170 (345)
T 4bbr_M          132 KITMLCDAAELPKIVKDCAKEAYKLCHDEKT------------------------------------LKGKSMES-----  170 (345)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT------------------------------------TTTCCHHH-----
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC------------------------------------ccCCCHHH-----
Confidence            4466778899999999888888866543210                                    01111111     


Q ss_pred             HhhcCCcchhHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHH
Q 004180          250 LRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLES  329 (770)
Q Consensus       250 lr~~Lp~~~TLAI~YLAcl~LR~PV~lsDLlRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~  329 (770)
                              ..-|-+|+||..-+.|.++-||.....-..-                                     .|-+
T Consensus       171 --------vaAAclYiACR~~~~prtl~eI~~~~~v~~k-------------------------------------eigr  205 (345)
T 4bbr_M          171 --------IMAASILIGCRRAEVARTFKEIQSLIHVKTK-------------------------------------EFGK  205 (345)
T ss_dssp             --------HHHHHHHHHHHHTCCBCCHHHHHHHHTCCTT-------------------------------------HHHH
T ss_pred             --------HHHHHHHHHHHhcCCCccHHHHHHHhCCCHH-------------------------------------HHHH
Confidence                    3458899999999999999999886642211                                     1222


Q ss_pred             HHHHHHHHhCC------------CCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHHH
Q 004180          330 FAASIAESIGL------------HLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVM  397 (770)
Q Consensus       330 la~~ia~~~gL------------~fPpiN~~lLL~Ryl~eL~LP~E~iy~~v~RL~~fs~p~~l~~~~~~~~~Pe~V~Lm  397 (770)
                      .-..+.+.+++            .+|++....++.||+..|+||.+ +...+.+|++.....  +.  ...+-|. ..+.
T Consensus       206 ~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~-v~~~A~~i~~~~~~~--~i--~~GR~P~-~IAA  279 (345)
T 4bbr_M          206 TLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKKCKEI--KE--IAGKSPI-TIAV  279 (345)
T ss_dssp             HHHHHHHCC-----------------------------------------------------------------------
T ss_pred             HHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHhc--cc--ccCCChH-HHHH
Confidence            22223333332            36788888999999999999998 777777777632221  11  1124576 7777


Q ss_pred             HHHHHHHHHh
Q 004180          398 SILIVSIRIL  407 (770)
Q Consensus       398 A~IIVAlKLL  407 (770)
                      |+|.+|.++.
T Consensus       280 AaIylAa~l~  289 (345)
T 4bbr_M          280 VSIYLNILLF  289 (345)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHh
Confidence            8888888763
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2 Back     alignment and structure
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ... Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 Back     alignment and structure
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query770
d1dl6a_58 Transcription initiation factor TFIIB, N-terminal 95.5
d1pfta_50 Transcription initiation factor TFIIB, N-terminal 95.02
d2akla238 Hypothetical protein PA0128, N-terminal domain {Ps 91.72
d1nuia254 Zinc-binding domain of primase-helicase {Bacteriop 89.55
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0035  Score=49.61  Aligned_cols=35  Identities=17%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             cccccccCCCCCCce-eecCCcceecccCCeeeccc
Q 004180            7 DIRRLKCKKCDNVGF-ECAYDGFYYCTHCNALDDEI   41 (770)
Q Consensus         7 ~~r~~~C~~C~S~~w-~~~~dG~~yC~~CGhv~Eg~   41 (770)
                      -+-...|++|++..+ .+..+|-++|..||.|++..
T Consensus         8 ~~~~~~Cp~Cgs~~ii~D~~~Ge~vC~~CG~Vlee~   43 (58)
T d1dl6a_           8 ALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDR   43 (58)
T ss_dssp             CCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCS
T ss_pred             cccccCCCCCCCCCEEEECCCCcEecccCCCEeccc
Confidence            345678999999987 34479999999999998753
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1nuia2 g.41.3.2 (A:10-63) Zinc-binding domain of primase-helicase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure