Citrus Sinensis ID: 004188
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 770 | 2.2.26 [Sep-21-2011] | |||||||
| Q4PE39 | 773 | Protein transport protein | N/A | no | 0.958 | 0.954 | 0.433 | 0.0 | |
| Q05AS9 | 765 | Protein transport protein | yes | no | 0.950 | 0.956 | 0.435 | 0.0 | |
| Q15436 | 765 | Protein transport protein | yes | no | 0.950 | 0.956 | 0.439 | 0.0 | |
| Q5R9P3 | 765 | Protein transport protein | yes | no | 0.950 | 0.956 | 0.439 | 0.0 | |
| Q7SZE5 | 765 | Protein transport protein | yes | no | 0.950 | 0.956 | 0.432 | 0.0 | |
| Q01405 | 765 | Protein transport protein | yes | no | 0.950 | 0.956 | 0.434 | 0.0 | |
| A2VDL8 | 768 | Protein transport protein | yes | no | 0.945 | 0.947 | 0.436 | 0.0 | |
| P0CR38 | 763 | Protein transport protein | yes | no | 0.955 | 0.964 | 0.430 | 0.0 | |
| P0CR39 | 763 | Protein transport protein | N/A | no | 0.955 | 0.964 | 0.430 | 0.0 | |
| Q9D662 | 767 | Protein transport protein | no | no | 0.949 | 0.953 | 0.429 | 0.0 |
| >sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1 | Back alignment and function desciption |
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Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/798 (43%), Positives = 499/798 (62%), Gaps = 60/798 (7%)
Query: 1 MDFTELEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICSK-C 59
M+ ++E +G+R SWN WPS+K +A ++P+S L+TPL + ++P + Y+P+ C C
Sbjct: 1 MNVDDVEDRDGVRLSWNVWPSSKIEATRTVVPISALYTPLKEREDLPPVLYEPVTCKPPC 60
Query: 60 GAVLNPYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHDHL 119
AVLNPY ++D ++W CPFC +N FP Y I+ TNLPAEL P Y+++EY +
Sbjct: 61 RAVLNPYCQIDVRGKLWICPFCLSRNAFPPHYKDISSTNLPAELLPKYTTIEYTLSRP-- 118
Query: 120 PNTLGSAKSFSSMASFSSVSSGGGGVLGPAFVFVVDGCMEESEIRAVKHELLRVMEQLPE 179
+ P F++VVD CM++ +++A++ L+ + LP
Sbjct: 119 ------------------------AQIPPIFLYVVDTCMDDDDLKALREALVVSLSLLPP 154
Query: 180 NALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQ--------- 230
NALVGL+ + +M VH+LG+ C + VF G +E + + IQ ++G+ +
Sbjct: 155 NALVGLITYGTMAQVHELGYDACPKSYVFRGTKEYAPKAIQDMLGLNPGARPMGAGAPGA 214
Query: 231 ----HQLGKTPVIQKQ----GFLLPVSECEFNVTTAIEEINSLTQRTP-----GHRPQRC 277
Q + P Q FLLPVS+CEF +T +E++ Q+ P R QRC
Sbjct: 215 PGGPSQAPRPPNATAQMGASRFLLPVSQCEFQLTQILEQL----QKDPWPVANDKRSQRC 270
Query: 278 TGAAISAAVGLLEGCSVNTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPY 337
TG A+S AVG+LE NTG+R+M+F GPAT GPG++V TE + IR+H D+ +A Y
Sbjct: 271 TGVALSVAVGMLETTFPNTGARVMLFCGGPATEGPGMVVSTELRERIRSHHDIDKDNAKY 330
Query: 338 YRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESDQFR 397
Y+++ FY+ ++ R + +D+FA LDQVG+ E+K + G +++ ++F+ F+
Sbjct: 331 YKRAIKFYEAMAKRAAGNGHTIDVFAGCLDQVGLLEMKGLANLTNGHMILADSFQMGIFK 390
Query: 398 KCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGT 457
+ +F D++G+L+M F+AT++V T+++K+ G +G VS KK+ V ++E G G T
Sbjct: 391 QSFHRLFQKDDQGHLQMGFNATLDVQCTKELKVSGLIGHAVSANKKSGCVGETEIGIGQT 450
Query: 458 YMWKLNTLASKTCIAFFFQVSDE--QKAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRW 515
WKL +L +T +F+V Q QPGS IQF+T Y+H + R RVTT AR +
Sbjct: 451 SAWKLCSLTPRTSAGIYFEVVTPAGQPMQPGSRGLIQFVTHYQHASGQYRLRVTTIARNF 510
Query: 516 VGKQSPEIAAGFDQEAAAAIMARLAIHRAETCYSRDVVRWLDDTLIRFTSKFGDYVPEDP 575
S +IAA FDQEAAA +MAR+A+ +AE S DV+RWLD LIR KF DY +DP
Sbjct: 511 AEGGSGQIAASFDQEAAAVLMARIAVFKAEIDDSPDVLRWLDRMLIRLCQKFADYRKDDP 570
Query: 576 SSFRLSSNFSLYPQFMFYLRRSQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQ 635
+SFRL NFS+YPQFMF+LRRSQF+ VFN +PDETAF+R +LN E V SLIMIQPTL
Sbjct: 571 TSFRLGENFSIYPQFMFHLRRSQFLQVFNNSPDETAFYRHVLNTEDVNNSLIMIQPTLMS 630
Query: 636 YSFDGPPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLL 695
Y F+GPP PVLLD SI PDV+LL D++FH++I +G +AQW+K GY +EN +++L
Sbjct: 631 YGFEGPPQPVLLDSVSIRPDVVLLLDTFFHILIFHGETVAQWRKAGYQDQEGYENFKEVL 690
Query: 696 EAPETDAEQLVAERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDS--MYKEGSD---VIF 750
E P DA+ L+A+R P P+ I CDQ+GSQARFLL+KLNPS T S MY + IF
Sbjct: 691 ENPRADAQDLLADRFPIPRYIVCDQNGSQARFLLSKLNPSTTHMSGGMYGSSGNSGAAIF 750
Query: 751 TDDLSLEVFIDHLQTLAV 768
TDD+SL+VF++HL+ LAV
Sbjct: 751 TDDVSLQVFMEHLKRLAV 768
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Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) |
| >sp|Q05AS9|SC23A_XENTR Protein transport protein Sec23A OS=Xenopus tropicalis GN=sec23a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q15436|SC23A_HUMAN Protein transport protein Sec23A OS=Homo sapiens GN=SEC23A PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5R9P3|SC23A_PONAB Protein transport protein Sec23A OS=Pongo abelii GN=SEC23A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7SZE5|SC23A_DANRE Protein transport protein Sec23A OS=Danio rerio GN=sec23a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q01405|SC23A_MOUSE Protein transport protein Sec23A OS=Mus musculus GN=Sec23a PE=1 SV=2 | Back alignment and function description |
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| >sp|A2VDL8|SC23A_BOVIN Protein transport protein Sec23A OS=Bos taurus GN=SEC23A PE=2 SV=1 | Back alignment and function description |
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| >sp|P0CR38|SEC23_CRYNJ Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|P0CR39|SEC23_CRYNB Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9D662|SC23B_MOUSE Protein transport protein Sec23B OS=Mus musculus GN=Sec23b PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 770 | ||||||
| 224111066 | 753 | predicted protein [Populus trichocarpa] | 0.972 | 0.994 | 0.763 | 0.0 | |
| 224099885 | 753 | predicted protein [Populus trichocarpa] | 0.972 | 0.994 | 0.755 | 0.0 | |
| 225432900 | 793 | PREDICTED: protein transport protein sec | 0.990 | 0.962 | 0.733 | 0.0 | |
| 449465435 | 783 | PREDICTED: protein transport protein SEC | 0.998 | 0.982 | 0.729 | 0.0 | |
| 449514583 | 783 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.998 | 0.982 | 0.727 | 0.0 | |
| 255551955 | 782 | protein transport protein sec23, putativ | 1.0 | 0.984 | 0.742 | 0.0 | |
| 147769678 | 706 | hypothetical protein VITISV_024487 [Viti | 0.916 | 1.0 | 0.715 | 0.0 | |
| 18422356 | 794 | sec23/sec24-like transport protein [Arab | 0.994 | 0.964 | 0.661 | 0.0 | |
| 297791513 | 793 | hypothetical protein ARALYDRAFT_494637 [ | 0.996 | 0.967 | 0.664 | 0.0 | |
| 358347883 | 746 | Protein transport protein SEC23 [Medicag | 0.964 | 0.995 | 0.677 | 0.0 |
| >gi|224111066|ref|XP_002315735.1| predicted protein [Populus trichocarpa] gi|222864775|gb|EEF01906.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1248 bits (3228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/774 (76%), Positives = 661/774 (85%), Gaps = 25/774 (3%)
Query: 1 MDFTELEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICSKCG 60
MDF ELEAIEGLRWSWN+WP+TK+ +LIIPLS++ TPLMQS+E+P+LPYDPLIC++C
Sbjct: 1 MDFIELEAIEGLRWSWNAWPTTKNQVSTLIIPLSIMCTPLMQSTELPILPYDPLICTRCA 60
Query: 61 AVLNPYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHDHLP 120
AVLNPY RVDY SRIW CPFCY +N FP SY I ETNLPAELFPTYS+VEY
Sbjct: 61 AVLNPYARVDYQSRIWVCPFCYNRNHFPISYLGIGETNLPAELFPTYSTVEY-------- 112
Query: 121 NTLGSAKSFSSMASFSSVSSGGGGVLGP--AFVFVVDGCMEESEIRAVKHELLRVMEQLP 178
V G++GP AFVFVVD CM E E+RAVK+ELL V+EQLP
Sbjct: 113 -------------KIDKVDPKFRGLVGPVPAFVFVVDACMVEEELRAVKNELLLVVEQLP 159
Query: 179 ENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAK--QHQLGKT 236
ENALVGL+ FD+MV V+DLGFSEC RV+VFHGGRE+SSEQ Q +GI K + QLGKT
Sbjct: 160 ENALVGLLTFDAMVRVYDLGFSECSRVVVFHGGREVSSEQTQQFLGIYSTKWQRQQLGKT 219
Query: 237 PVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNT 296
PVIQKQGFLLPVSECEFN+TTAIEEI SL PGHRPQRCTGAAIS A+GLLEGCS NT
Sbjct: 220 PVIQKQGFLLPVSECEFNITTAIEEICSLAVVMPGHRPQRCTGAAISVALGLLEGCSGNT 279
Query: 297 GSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSS 356
GSRIM+FTSGPAT+GPGI+V+++ S +IR H D++NGHAP+Y KSC+FY QLS RL +S
Sbjct: 280 GSRIMIFTSGPATLGPGIVVNSDLSNSIRTHRDLINGHAPHYMKSCSFYNQLSQRLSDAS 339
Query: 357 IVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESDQFRKCMRHIFGHDEEGNLKMYF 416
+VLDLFACSLDQVG AELK PVE SGGF+M GE FESDQFRKC+RHIF DEEG+LKMYF
Sbjct: 340 VVLDLFACSLDQVGAAELKCPVESSGGFMMFGELFESDQFRKCLRHIFSRDEEGHLKMYF 399
Query: 417 DATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKLNTLASKTCIAFFFQ 476
DATIEVVTT+D+KICGALGPCVSL+KKNN+VSD E GEGGTYMWKL TL +KTC+AFFF+
Sbjct: 400 DATIEVVTTKDVKICGALGPCVSLRKKNNVVSDREIGEGGTYMWKLGTLNNKTCVAFFFE 459
Query: 477 VSDEQKAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQSPEIAAGFDQEAAAAIM 536
V DE KA+PGSAFF+QFITRYR+GNM +RKRVTTAARRWV +SPEI AGFDQEAAA++M
Sbjct: 460 VCDEHKAEPGSAFFVQFITRYRNGNMGVRKRVTTAARRWVESKSPEINAGFDQEAAASVM 519
Query: 537 ARLAIHRAETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFYLRR 596
ARLAIHRAE C +RDV+ WLDD LI F SKFGDY+ EDPSSFRLSSNFSLYPQFM+YLRR
Sbjct: 520 ARLAIHRAERCLARDVISWLDDNLISFASKFGDYIQEDPSSFRLSSNFSLYPQFMYYLRR 579
Query: 597 SQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDVRSISPDV 656
SQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDVRSIS DV
Sbjct: 580 SQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDVRSISADV 639
Query: 657 ILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPETDAEQLVAERIPAPKII 716
ILLFDSYFHVVIHYGSKIAQW+K GY KDPNHENLRKLLEAPE DAEQLV ER+PAPK+I
Sbjct: 640 ILLFDSYFHVVIHYGSKIAQWRKLGYHKDPNHENLRKLLEAPELDAEQLVVERVPAPKLI 699
Query: 717 KCDQHGSQARFLLAKLNPSVTQDSMYKEGSDVIFTDDLSLEVFIDHLQTLAVQG 770
KCDQHGSQARFLLAKLNPSVTQ+S Y +GS++I TDDLSL+ FIDHLQ LAV+G
Sbjct: 700 KCDQHGSQARFLLAKLNPSVTQNSAYADGSEIILTDDLSLQDFIDHLQALAVRG 753
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099885|ref|XP_002311659.1| predicted protein [Populus trichocarpa] gi|222851479|gb|EEE89026.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225432900|ref|XP_002284161.1| PREDICTED: protein transport protein sec23-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449465435|ref|XP_004150433.1| PREDICTED: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449514583|ref|XP_004164421.1| PREDICTED: LOW QUALITY PROTEIN: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255551955|ref|XP_002517022.1| protein transport protein sec23, putative [Ricinus communis] gi|223543657|gb|EEF45185.1| protein transport protein sec23, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|147769678|emb|CAN67335.1| hypothetical protein VITISV_024487 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|18422356|ref|NP_568626.1| sec23/sec24-like transport protein [Arabidopsis thaliana] gi|28058769|gb|AAO29951.1| Unknown protein [Arabidopsis thaliana] gi|34098821|gb|AAQ56793.1| At5g43670 [Arabidopsis thaliana] gi|332007610|gb|AED94993.1| sec23/sec24-like transport protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297791513|ref|XP_002863641.1| hypothetical protein ARALYDRAFT_494637 [Arabidopsis lyrata subsp. lyrata] gi|297309476|gb|EFH39900.1| hypothetical protein ARALYDRAFT_494637 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|358347883|ref|XP_003637980.1| Protein transport protein SEC23 [Medicago truncatula] gi|358347970|ref|XP_003638023.1| Protein transport protein SEC23 [Medicago truncatula] gi|355503915|gb|AES85118.1| Protein transport protein SEC23 [Medicago truncatula] gi|355503958|gb|AES85161.1| Protein transport protein SEC23 [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 770 | ||||||
| TAIR|locus:2171914 | 794 | AT5G43670 "AT5G43670" [Arabido | 0.8 | 0.775 | 0.671 | 2.5e-283 | |
| TAIR|locus:2129460 | 773 | AT4G14160 "AT4G14160" [Arabido | 0.797 | 0.794 | 0.464 | 3.1e-177 | |
| TAIR|locus:2201051 | 783 | AT1G05520 "AT1G05520" [Arabido | 0.975 | 0.959 | 0.433 | 3e-172 | |
| UNIPROTKB|E1C3Y5 | 765 | SEC23A "Protein transport prot | 0.797 | 0.802 | 0.439 | 7.8e-170 | |
| UNIPROTKB|Q15436 | 765 | SEC23A "Protein transport prot | 0.797 | 0.802 | 0.440 | 3.4e-169 | |
| UNIPROTKB|J9P1Q5 | 765 | SEC23A "Uncharacterized protei | 0.797 | 0.802 | 0.440 | 7e-169 | |
| UNIPROTKB|F1SHL3 | 765 | SEC23A "Uncharacterized protei | 0.797 | 0.802 | 0.440 | 7e-169 | |
| UNIPROTKB|F1MVW5 | 767 | SEC23A "Protein transport prot | 0.798 | 0.801 | 0.438 | 1.1e-168 | |
| UNIPROTKB|F6V2R0 | 767 | SEC23A "Uncharacterized protei | 0.798 | 0.801 | 0.438 | 1.1e-168 | |
| MGI|MGI:1349635 | 765 | Sec23a "SEC23A (S. cerevisiae) | 0.797 | 0.802 | 0.436 | 6.3e-168 |
| TAIR|locus:2171914 AT5G43670 "AT5G43670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2234 (791.5 bits), Expect = 2.5e-283, Sum P(2) = 2.5e-283
Identities = 415/618 (67%), Positives = 505/618 (81%)
Query: 155 DGCMEESEIRAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGREL 214
D M E E+RAV+ ++L V+EQLPEN LV L+ FDSMV V+DLGFSEC +V+VFHG R+L
Sbjct: 177 DASMVEDELRAVRSDVLFVIEQLPENCLVALITFDSMVRVYDLGFSECSKVVVFHGERDL 236
Query: 215 SSEQIQHLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRP 274
S +QIQ +G+ +KQ GK I+KQ FLLP+ ECEFN+T+A EEI L PGHRP
Sbjct: 237 SPDQIQQFLGLGYSKQFHHGKMSAIRKQSFLLPLVECEFNLTSAFEEIIPLVDVKPGHRP 296
Query: 275 QRCTGAAISAAVGLLEGCSVNTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGH 334
R TGAAIS A+GLLEGCSV TGSRIMVFTSGPAT GPGIIVD++ S +IR H D++ GH
Sbjct: 297 HRSTGAAISTALGLLEGCSVTTGSRIMVFTSGPATRGPGIIVDSDLSNSIRTHRDIITGH 356
Query: 335 APYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESD 394
YY KSC FYK+L+ RL SS+VLD+FACSLDQVG AEL+ VE SGGF+++GETFES+
Sbjct: 357 VSYYDKSCGFYKKLAKRLCDSSVVLDVFACSLDQVGAAELRYAVEMSGGFLLLGETFESE 416
Query: 395 QFRKCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGE 454
QF+KC+RHIF D +GNL MYFD ++EVVTT+D++ICGALGP VSL++KN++VS++E GE
Sbjct: 417 QFKKCLRHIFIRDADGNLSMYFDVSLEVVTTKDMRICGALGPVVSLRQKNDIVSETEIGE 476
Query: 455 GGTYMWKLNTLASKTCIAFFFQVSDEQ--KAQPGSAFFIQFITRYRHGNMNIRKRVTTAA 512
GGTYMWK +T+ +KTC++FFF VS+EQ K QPGSAFFIQFITRYR+GN +RKRVTT A
Sbjct: 477 GGTYMWKTSTVTNKTCVSFFFHVSNEQNRKPQPGSAFFIQFITRYRYGNGAMRKRVTTVA 536
Query: 513 RRWVGKQSPEIAAGFDQEXXXXXXXXXXXXXXETCYSRDVVRWLDDTLIRFTSKFGDYVP 572
RRWV +SPEI++ FDQE E C++RDV+ WLD+ LIRF S+FGDY+
Sbjct: 537 RRWVAGKSPEISSSFDQETAASVMARLAINRAEECHARDVITWLDNGLIRFASRFGDYIQ 596
Query: 573 EDPSSFRLSSNFSLYPQFMFYLRRSQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPT 632
EDPSSFRL+ NFSLYPQFMFYLRRSQF+DVFN +PDET FFRLMLNREGVV S+IMIQPT
Sbjct: 597 EDPSSFRLTPNFSLYPQFMFYLRRSQFLDVFNNSPDETGFFRLMLNREGVVNSIIMIQPT 656
Query: 633 LFQYSFDGPPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLR 692
L +YSFDGPPVPVLLD+RS++PDVILLFDSYF+VVIH+GSKIAQW+K Y KDP+HE R
Sbjct: 657 LLRYSFDGPPVPVLLDIRSVTPDVILLFDSYFYVVIHHGSKIAQWRKLEYHKDPSHETFR 716
Query: 693 KLLEAPETDAEQLVAERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYKEGSDVIFTD 752
LLEAPE DA QLV +RIP P+I++CDQHGSQARFLLAKLNPSVTQ + + GSD++ TD
Sbjct: 717 NLLEAPEIDAAQLVTDRIPMPRIVRCDQHGSQARFLLAKLNPSVTQKTDHTGGSDIVLTD 776
Query: 753 DLSLEVFIDHLQTLAVQG 770
D+SL+ F++ LQ+LAV+G
Sbjct: 777 DMSLQDFLEDLQSLAVKG 794
|
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| TAIR|locus:2129460 AT4G14160 "AT4G14160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2201051 AT1G05520 "AT1G05520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C3Y5 SEC23A "Protein transport protein Sec23A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q15436 SEC23A "Protein transport protein Sec23A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P1Q5 SEC23A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SHL3 SEC23A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MVW5 SEC23A "Protein transport protein Sec23A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6V2R0 SEC23A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| MGI|MGI:1349635 Sec23a "SEC23A (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7SZE5 | SC23A_DANRE | No assigned EC number | 0.4320 | 0.9506 | 0.9568 | yes | no |
| Q5R9P3 | SC23A_PONAB | No assigned EC number | 0.4397 | 0.9506 | 0.9568 | yes | no |
| Q2URM9 | SEC23_ASPOR | No assigned EC number | 0.4276 | 0.9584 | 0.9596 | yes | no |
| Q6CPH3 | SEC23_KLULA | No assigned EC number | 0.3956 | 0.9636 | 0.9763 | yes | no |
| Q6FSI6 | SC232_CANGA | No assigned EC number | 0.3971 | 0.9636 | 0.9801 | yes | no |
| Q05AS9 | SC23A_XENTR | No assigned EC number | 0.4358 | 0.9506 | 0.9568 | yes | no |
| A3GFA2 | SEC23_PICST | No assigned EC number | 0.3841 | 0.9558 | 0.9826 | yes | no |
| Q54T59 | SEC23_DICDI | No assigned EC number | 0.4170 | 0.9558 | 0.9813 | yes | no |
| Q4WK80 | SEC23_ASPFU | No assigned EC number | 0.4256 | 0.9571 | 0.9448 | yes | no |
| Q15436 | SC23A_HUMAN | No assigned EC number | 0.4397 | 0.9506 | 0.9568 | yes | no |
| Q6C5L5 | SEC23_YARLI | No assigned EC number | 0.4193 | 0.9545 | 0.9696 | yes | no |
| Q6BQT6 | SEC23_DEBHA | No assigned EC number | 0.3915 | 0.9545 | 0.9852 | yes | no |
| A2Q8L1 | SEC23_ASPNC | No assigned EC number | 0.4282 | 0.9584 | 0.9609 | yes | no |
| P0CR38 | SEC23_CRYNJ | No assigned EC number | 0.4303 | 0.9558 | 0.9646 | yes | no |
| Q5BGR9 | SEC23_EMENI | No assigned EC number | 0.4278 | 0.9584 | 0.9571 | yes | no |
| Q01405 | SC23A_MOUSE | No assigned EC number | 0.4346 | 0.9506 | 0.9568 | yes | no |
| P15303 | SEC23_YEAST | No assigned EC number | 0.4005 | 0.9636 | 0.9661 | yes | no |
| O74873 | SC231_SCHPO | No assigned EC number | 0.4219 | 0.9636 | 0.9776 | yes | no |
| Q758M7 | SEC23_ASHGO | No assigned EC number | 0.3949 | 0.9597 | 0.9775 | yes | no |
| A2VDL8 | SC23A_BOVIN | No assigned EC number | 0.4368 | 0.9454 | 0.9479 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 770 | |||
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 0.0 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 0.0 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 2e-87 | |
| cd11287 | 121 | cd11287, Sec23_C, C-terminal Actin depolymerizatio | 9e-64 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 1e-55 | |
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 9e-55 | |
| pfam04815 | 103 | pfam04815, Sec23_helical, Sec23/Sec24 helical doma | 6e-34 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 2e-18 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 2e-16 | |
| pfam04810 | 39 | pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | 3e-14 | |
| cd01479 | 244 | cd01479, Sec24-like, Sec24-like: Protein and membr | 9e-13 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 5e-08 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 3e-05 |
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
Score = 1319 bits (3417), Expect = 0.0
Identities = 430/784 (54%), Positives = 532/784 (67%), Gaps = 37/784 (4%)
Query: 1 MDFTELEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICSKCG 60
MDF ELEAI+G+R SWN WPS+K +A +IPL+ L+TPL E+PVLPYDPL C C
Sbjct: 1 MDFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLPELPVLPYDPLRCRTCR 60
Query: 61 AVLNPYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHDHLP 120
AVLNPY RVD+ ++IW CPFC+ +N FP YSSI+ETNLPAELFP Y++VEY LP
Sbjct: 61 AVLNPYCRVDFQAKIWICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYT-----LP 115
Query: 121 NTLGSAKSFSSMASFSSVSSGGGGVLGPAFVFVVDGCMEESEIRAVKHELLRVMEQLPEN 180
GG P FVFVVD CM E E+ A+K LL+ + LPEN
Sbjct: 116 P------------------GSGGAPSPPVFVFVVDTCMIEEELGALKSALLQAIALLPEN 157
Query: 181 ALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQHQLGK----- 235
ALVGL+ F + V+VH+LGFSEC + VF G +E+S +QI +G+ K+ G
Sbjct: 158 ALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGA 217
Query: 236 ---TPVIQKQGFLLPVSECEFNVTTAIEEINSLT-QRTPGHRPQRCTGAAISAAVGLLEG 291
FLLP SECEF + +A+EE+ PGHRP RCTGAA+S A GLL
Sbjct: 218 RDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGA 277
Query: 292 CSVNTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDR 351
C TG+RIM F GP T GPG IV + S+ IR+H D+ APYY+K+ FY+ L+ +
Sbjct: 278 CVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQ 337
Query: 352 LIKSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESDQFRKCMRHIFGHDEEGN 411
L+ VLD+FACSLDQVGVAE+KV VE++GG +++ E+F F+ +R +F D EG+
Sbjct: 338 LVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDGEGS 397
Query: 412 LKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKLNTLASKTCI 471
L + F+ T EV ++D+K+ GA+GPC SL+KK VSD+E GEGGT WKL L KT +
Sbjct: 398 LGLSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSL 457
Query: 472 AFFFQVSDEQ---KAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRWV-GKQSPEIAAGF 527
A FF+V++ PG FF+QF+TRY+H N R RVTT RRWV G S E+ AGF
Sbjct: 458 AVFFEVANSGQSNPQPPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEGSSSEELVAGF 517
Query: 528 DQEAAAAIMARLAIHRAETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLY 587
DQEAAA +MARLA H+ ET D RWLD LIR SKFGDY +DPSSFRLS NFSLY
Sbjct: 518 DQEAAAVVMARLASHKMETEEEFDATRWLDRALIRLCSKFGDYRKDDPSSFRLSPNFSLY 577
Query: 588 PQFMFYLRRSQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLL 647
PQFMF LRRSQF+ VFN +PDETA+FR+MLNRE V SL+MIQPTL YSF+GPP PVLL
Sbjct: 578 PQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSFNGPPEPVLL 637
Query: 648 DVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPETDAEQLVA 707
DV SI+ D ILL DSYF VVI +GS IAQW+K GY P HE +LLEAP+ DA+ ++
Sbjct: 638 DVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIK 697
Query: 708 ERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMY-KEGSDVIFTDDLSLEVFIDHLQTL 766
ER P P+++ CDQHGSQARFLLAKLNPS T +S GSD+IFTDD+SL+VF++HLQ L
Sbjct: 698 ERFPVPRLVVCDQHGSQARFLLAKLNPSATYNSANAMGGSDIIFTDDVSLQVFMEHLQRL 757
Query: 767 AVQG 770
AVQ
Sbjct: 758 AVQS 761
|
Length = 761 |
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|200443 cd11287, Sec23_C, C-terminal Actin depolymerization factor-homology domain of Sec23 | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain | Back alignment and domain information |
|---|
| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
|---|
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 770 | |||
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| KOG1986 | 745 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 100.0 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 100.0 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 100.0 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 100.0 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.87 | |
| PF04815 | 103 | Sec23_helical: Sec23/Sec24 helical domain; InterPr | 99.78 | |
| PF04810 | 40 | zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: | 99.6 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.53 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.51 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.49 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 98.45 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.45 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 98.42 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 98.38 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 98.35 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 98.31 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.3 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.26 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.2 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 98.1 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 98.07 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 98.05 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 98.02 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 98.01 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 98.0 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 97.97 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 97.93 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 97.89 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 97.85 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 97.79 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 97.78 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 97.67 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 97.66 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.56 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.52 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 97.46 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 97.41 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 97.35 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 97.33 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 97.24 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.1 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 97.06 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 97.05 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 97.03 | |
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 96.96 | |
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 96.87 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 96.81 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 96.63 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 96.06 | |
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 95.96 | |
| smart00187 | 423 | INB Integrin beta subunits (N-terminal portion of | 95.44 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 94.21 | |
| TIGR00578 | 584 | ku70 ATP-dependent DNA helicase ii, 70 kDa subunit | 93.65 | |
| KOG2884 | 259 | consensus 26S proteasome regulatory complex, subun | 93.22 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 92.81 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 92.79 | |
| PF00362 | 426 | Integrin_beta: Integrin, beta chain; InterPro: IPR | 92.59 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 92.33 | |
| COG5148 | 243 | RPN10 26S proteasome regulatory complex, subunit R | 89.5 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 88.34 | |
| cd01455 | 191 | vWA_F11C1-5a_type Von Willebrand factor type A (vW | 83.94 | |
| PF03731 | 224 | Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte | 83.86 | |
| PF10058 | 54 | DUF2296: Predicted integral membrane metal-binding | 82.95 | |
| KOG2807 | 378 | consensus RNA polymerase II transcription initiati | 81.87 | |
| TIGR01053 | 31 | LSD1 zinc finger domain, LSD1 subclass. This model | 80.58 |
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-170 Score=1489.76 Aligned_cols=747 Identities=57% Similarity=0.982 Sum_probs=707.3
Q ss_pred CCcccccCCCeeeeeccccCCCHhhhhhcCCCeeEEEccCCCCCCCCCCCCCCccCCCCCeeEcCceEEecCCCeEEecC
Q 004188 1 MDFTELEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICSKCGAVLNPYGRVDYASRIWTCPF 80 (770)
Q Consensus 1 ~~~~~~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~ip~~~~~p~RC~~C~ayiNp~~~~~~~~~~w~C~~ 80 (770)
|||+|+|+.++||+|||+||.|+.++++++|||||+|+||++.+++|+++++|+||++|+|||||||+|+.+|++|+|||
T Consensus 1 ~~~~~~e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~~vp~v~~~pvRC~~CraylNPf~~~d~~~~~W~C~~ 80 (761)
T PLN00162 1 MDFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLPELPVLPYDPLRCRTCRAVLNPYCRVDFQAKIWICPF 80 (761)
T ss_pred CchhhhcccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCCCCCcCCCCCCccCCCcCEECCceEEecCCCEEEccC
Confidence 89999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCCCCCCCCccccCCCceEEEEecCCCCCCCCCCccccccccccccCCCCCCCCCCcEEEEEEecCcch
Q 004188 81 CYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHDHLPNTLGSAKSFSSMASFSSVSSGGGGVLGPAFVFVVDGCMEE 160 (770)
Q Consensus 81 C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vFvID~s~~~ 160 (770)
|+..|.+|++|.+++++++||||.|+++||||++|+ |+.++ +.||+|+||||+|..+
T Consensus 81 C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~-~~~~~----------------------~~pp~fvFvID~s~~~ 137 (761)
T PLN00162 81 CFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPP-GSGGA----------------------PSPPVFVFVVDTCMIE 137 (761)
T ss_pred CCCCCCCchHhcccCccCCChhhcCCceeEEEECCC-CCCCC----------------------CCCcEEEEEEecchhH
Confidence 999999999998788889999998889999999997 66554 8899999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhhhccccccccc-C------
Q 004188 161 SEIRAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQHQ-L------ 233 (770)
Q Consensus 161 ~~l~~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~l~v~d~~~~~-~------ 233 (770)
++++.++++|+++|+.||++++|||||||+.||||+|+.+++++++||+|+++++.+|+++++++.+..... +
T Consensus 138 ~~l~~lk~sl~~~L~~LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~l~~~l~l~~~~~~~~~~~~~~~ 217 (761)
T PLN00162 138 EELGALKSALLQAIALLPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGA 217 (761)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHHHHHHHhccccccccccccccccc
Confidence 999999999999999999999999999999999999998889999999999999999999998875533210 0
Q ss_pred -CCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCC-CCCCCCcchHHHHHHHHHHhhcccCCCCcEEEEEecCCCCCC
Q 004188 234 -GKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRT-PGHRPQRCTGAAISAAVGLLEGCSVNTGSRIMVFTSGPATMG 311 (770)
Q Consensus 234 -~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~-~~~~~~~~~G~Al~~A~~ll~~~~~~~gGkI~~F~sg~pt~G 311 (770)
...+.|..++||+|++||+..|+++||+|++++|++ .++++.||+|+||++|..+|+.+.++.||||++|++||||.|
T Consensus 218 ~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~~~~~gGrI~~F~sgppT~G 297 (761)
T PLN00162 218 RDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEG 297 (761)
T ss_pred cccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhccCCCceEEEEEeCCCCCCC
Confidence 012456678999999999999999999999999887 788999999999999999999877789999999999999999
Q ss_pred CCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccccCcceeEEEeCCC
Q 004188 312 PGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETF 391 (770)
Q Consensus 312 pG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~~TGG~v~~~~~f 391 (770)
||+|+.+++++++|+|+|++++++++++++.+||++||.+|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|
T Consensus 298 pG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG~v~~~~sF 377 (761)
T PLN00162 298 PGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESF 377 (761)
T ss_pred CceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCcEEEEeCCc
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhccCcccccceeeeEEEEEEEcCCceEeeeecCccccccCCCCcCCCccCCCCccceeeecCCCCceE
Q 004188 392 ESDQFRKCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKLNTLASKTCI 471 (770)
Q Consensus 392 ~~~~~~~~l~~~l~~~~~~~l~~~~~a~l~vr~S~gl~v~~~~G~~~~~~k~~~~vsd~~~g~g~t~~~~l~~~~~~~si 471 (770)
+.+.|+++++|+|+|+.++++++||+|+||||||+|++|.+++||++...+++.+++|+++|.|+|+.|+++++++++|+
T Consensus 378 ~~~~f~~~l~r~~~r~~~~~~~~gf~a~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~ 457 (761)
T PLN00162 378 GHSVFKDSLRRVFERDGEGSLGLSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSL 457 (761)
T ss_pred ChHHHHHHHHHHhcccccccccccceeEEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEE
Confidence 99999999999999987888889999999999999999999999999888888899999999999999999999999999
Q ss_pred EEEEEeccCC---cCCCCCeEEEEEEEEEEecCCcEEEEEEeccccccC-CChHHHHhccCHHHHHHHHHHHHHHHHhhC
Q 004188 472 AFFFQVSDEQ---KAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRWVG-KQSPEIAAGFDQEAAAAIMARLAIHRAETC 547 (770)
Q Consensus 472 ~~~f~~~~~~---~l~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~vt~-~~~~~v~~~~D~ea~~~llar~a~~~~~~~ 547 (770)
+|+|++++.. ++.+...+||||+++||+.+|+|||||||++++++. +++.+++++|||||++++|||+|+.+++++
T Consensus 458 av~f~~~~~~~~~~~~~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~~~~~~~~~~~v~~~fDqeA~a~llaR~av~k~~~~ 537 (761)
T PLN00162 458 AVFFEVANSGQSNPQPPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEGSSSEELVAGFDQEAAAVVMARLASHKMETE 537 (761)
T ss_pred EEEEEEccccccCCCCCCceEEEEEEEEEEcCCCCEEEEEEccccCccCCCCHHHHHHhcCHHHHHHHHHHHHHHHHhhC
Confidence 9999998653 334567899999999999999999999999999762 378899999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhcccCCCCCCCcccCcccccHHHHHHHhhccccCCCCCCChhHHHHHHHHHhcCChHHHHH
Q 004188 548 YSRDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFYLRRSQFIDVFNCTPDETAFFRLMLNREGVVGSLI 627 (770)
Q Consensus 548 ~~~~~~~~l~~~l~~~~~~~~~yr~~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~~~~~~~~~ 627 (770)
+..|+++||+++|+++|++|+.|||+++++|+||++|++||+|||+|+||++|+++|+|||||+|+|++++++++++++.
T Consensus 538 ~~~d~~r~ld~~li~~~~~f~~Yrk~~~~s~~Lp~~~~~lP~f~~~LrRS~~l~~~n~spDera~~r~~l~~~~~~~sl~ 617 (761)
T PLN00162 538 EEFDATRWLDRALIRLCSKFGDYRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSLV 617 (761)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhcccCCccccCCHHHHHHHHHHHHHhhhhhccCCCCCchHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCCCCcccccccccccCCeeEEEeCCcEEEEEEcCchhhHhhCCCCCCCcchhHHHHHhccHHHHHHHHH
Q 004188 628 MIQPTLFQYSFDGPPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPETDAEQLVA 707 (770)
Q Consensus 628 ~iyP~L~~~~~~~~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 707 (770)
||||+|++||++++|+|++||+++|++|+|||||+|++|+||+|+++++|+++|||++|||++++++|++|+++|++|++
T Consensus 618 mI~P~L~sy~~~~~P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~~ 697 (761)
T PLN00162 618 MIQPTLISYSFNGPPEPVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIK 697 (761)
T ss_pred hhCCeEEEecCCCCCcceecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCChHHHHHHhhCCCCCCCCccC-CCCcccccCCCcHHHHHHHHHHHHhcC
Q 004188 708 ERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYK-EGSDVIFTDDLSLEVFIDHLQTLAVQG 770 (770)
Q Consensus 708 ~R~~~p~~~~~~~g~~~~r~l~~~L~~~~~~~~~~~-~~~~~~~t~~~S~~~fl~~l~~~~~~~ 770 (770)
+|+|+||+++|+||+||+|||++||||+++|++... .+++.++|||+|++.||+||+|++|++
T Consensus 698 ~Rfp~Pr~i~~~~~~SqaRfl~~klnPs~~~~~~~~~~~~~~~~tdd~sl~~f~~~l~~~~v~~ 761 (761)
T PLN00162 698 ERFPVPRLVVCDQHGSQARFLLAKLNPSATYNSANAMGGSDIIFTDDVSLQVFMEHLQRLAVQS 761 (761)
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHhcCCcccccCCCCCCCCCeeecCCcCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999966543 366789999999999999999999985
|
|
| >KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) | Back alignment and domain information |
|---|
| >KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway | Back alignment and domain information |
|---|
| >PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [] | Back alignment and domain information |
|---|
| >KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01053 LSD1 zinc finger domain, LSD1 subclass | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 770 | ||||
| 3eg9_A | 764 | Crystal Structure Of The Mammalian Copii-Coat Prote | 0.0 | ||
| 2nup_A | 769 | Crystal Structure Of The Human Sec23a24A HETERODIME | 0.0 | ||
| 3efo_A | 765 | Crystal Structure Of The Mammalian Copii-Coat Prote | 0.0 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 1e-168 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 1e-167 | ||
| 2yrc_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 9e-11 | ||
| 2yrd_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 3e-10 | ||
| 3eh1_A | 751 | Crystal Structure Of The Human Copii-Coat Protein S | 2e-05 | ||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 3e-04 | ||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 3e-04 |
| >pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 | Back alignment and structure |
|
| >pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 | Back alignment and structure |
| >pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 | Back alignment and structure |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Length = 59 | Back alignment and structure |
| >pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Mutant V69a Length = 59 | Back alignment and structure |
| >pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 | Back alignment and structure |
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
Score = 655 bits (1689), Expect = 0.0
Identities = 340/785 (43%), Positives = 487/785 (62%), Gaps = 41/785 (5%)
Query: 1 MDFTEL-EAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICSK- 58
++F + E +G+R+SWN WPS++ +A +++P++ L TPL + ++P + Y+P++CS+
Sbjct: 9 LEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRT 68
Query: 59 -CGAVLNPYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHD 117
C AVLNP +VDY +++W C FCY +N FP SY+ I+E N PAEL P +SS+EY
Sbjct: 69 TCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRG 128
Query: 118 HLPNTLGSAKSFSSMASFSSVSSGGGGVLGPAFVFVVDGCMEESEIRAVKHELLRVMEQL 177
F++VVD CME+ +++A+K + + L
Sbjct: 129 PQMP--------------------------LIFLYVVDTCMEDEDLQALKESMQMSLSLL 162
Query: 178 PENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQHQLGKTP 237
P ALVGL+ F MV VH+LG + VF G ++LS++Q+Q ++G+ Q + P
Sbjct: 163 PPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGP 222
Query: 238 VIQ----KQGFLLPVSECEFNVTTAIEEINSLTQRTP-GHRPQRCTGAAISAAVGLLEGC 292
+Q FL PV + + N+T + E+ P G RP R +G A+S AVGLLE
Sbjct: 223 QVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECT 282
Query: 293 SVNTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRL 352
NTG+RIM+F GPAT GPG++V E IR+ D+ +A Y +K ++ L++R
Sbjct: 283 FPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRA 342
Query: 353 IKSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESDQFRKCMRHIFGHDEEGNL 412
+ V+D++AC+LDQ G+ E+K +GG++++G++F + F++ + +F D G
Sbjct: 343 ATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQF 402
Query: 413 KMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKLNTLASKTCIA 472
KM F T+E+ T+R+IKI GA+GPCVSL K VS++E G GGT WK+ L+ T +A
Sbjct: 403 KMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLA 462
Query: 473 FFFQVSD--EQKAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRW--VGKQSPEIAAGFD 528
+F+V + G IQF+T+Y+H + R RVTT AR W Q IAA FD
Sbjct: 463 IYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFD 522
Query: 529 QEAAAAIMARLAIHRAETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYP 588
QEAAA +MARLAI+RAET DV+RWLD LIR KFG+Y +DPSSFR S FSLYP
Sbjct: 523 QEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYP 582
Query: 589 QFMFYLRRSQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLD 648
QFMF+LRRS F+ VFN +PDE++++R R+ + SLIMIQP L+ YSF GPP PVLLD
Sbjct: 583 QFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLD 642
Query: 649 VRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPETDAEQLVAE 708
SI D ILL D++F ++I++G IAQW+K GY P +EN R LL+AP DA++++
Sbjct: 643 SSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHS 702
Query: 709 RIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYKEGSD---VIFTDDLSLEVFIDHLQT 765
R P P+ I + GSQARFLL+K+NPS T ++MY G + I TDD+SL+VF+DHL+
Sbjct: 703 RFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKK 762
Query: 766 LAVQG 770
LAV
Sbjct: 763 LAVSS 767
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 770 | |||
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 2yrc_A | 59 | Protein transport protein SEC23A; zinc binding, co | 99.62 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 99.18 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.78 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.27 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.25 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.25 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.24 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 98.2 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 98.2 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 98.19 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 98.18 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 98.14 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 98.12 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 98.07 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 98.07 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 98.04 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 97.98 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 97.95 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 97.92 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 97.84 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 97.84 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 97.78 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 97.65 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 97.65 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 97.54 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 97.14 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 97.0 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 97.0 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 96.46 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 96.35 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 96.04 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 96.0 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 95.85 | |
| 3vi3_B | 454 | Integrin beta-1; beta propeller fold, rossman fold | 95.82 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 95.54 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 95.5 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 95.03 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 94.88 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 94.34 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 94.23 | |
| 2iue_A | 212 | Pactolus I-domain; membrane protein, CD, ITC, limb | 93.23 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 92.91 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 92.76 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 91.01 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 90.88 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 90.22 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 88.95 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 82.29 |
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-161 Score=1429.26 Aligned_cols=738 Identities=45% Similarity=0.835 Sum_probs=673.4
Q ss_pred CCcc----cccCCCeeeeeccccCCCHhhhhhcCCCeeEEEccCCCCCCCCCCCCCCccCCC--CCeeEcCceEEecCCC
Q 004188 1 MDFT----ELEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICSK--CGAVLNPYGRVDYASR 74 (770)
Q Consensus 1 ~~~~----~~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~ip~~~~~p~RC~~--C~ayiNp~~~~~~~~~ 74 (770)
|||. +||+|+|||+|||+||.|++++++++||||++|+||++.+++|+++++|+||++ |+|||||||+|+.+|+
T Consensus 6 ~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~ 85 (769)
T 2nut_A 6 TTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAK 85 (769)
T ss_dssp -CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEETTTT
T ss_pred cchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCCCCCcCCCCCCcCCCCCCCeEECCceEEeCCCC
Confidence 5665 479999999999999999999999999999999999988889999999999999 9999999999999999
Q ss_pred eEEecCCCCCCCCCcCCCCCCCCCCCccccCCCceEEEEecCCCCCCCCCCccccccccccccCCCCCCCCCCcEEEEEE
Q 004188 75 IWTCPFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHDHLPNTLGSAKSFSSMASFSSVSSGGGGVLGPAFVFVV 154 (770)
Q Consensus 75 ~w~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vFvI 154 (770)
+|+||||+..|++|++|.++++.++||||.|+++||||++|++| +.||+|+|||
T Consensus 86 ~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~--------------------------p~pp~~vFvI 139 (769)
T 2nut_A 86 LWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP--------------------------QMPLIFLYVV 139 (769)
T ss_dssp EEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSC--------------------------CCCCEEEEEE
T ss_pred EEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCC--------------------------CCCCEEEEEE
Confidence 99999999999999999888888899999666999999999854 6789999999
Q ss_pred ecCcchhHHHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhhhccccc------
Q 004188 155 DGCMEESEIRAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCA------ 228 (770)
Q Consensus 155 D~s~~~~~l~~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~l~v~d~------ 228 (770)
|+|.+++++++++++|+++|+.||++++|||||||+.||||++++..+++++||+|+++++.+|+++|++++|.
T Consensus 140 DvS~~a~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~ 219 (769)
T 2nut_A 140 DTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQAT 219 (769)
T ss_dssp ECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC----------
T ss_pred ECCccHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888752
Q ss_pred ---ccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCC-CCCCCCcchHHHHHHHHHHhhcccCCCCcEEEEEe
Q 004188 229 ---KQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRT-PGHRPQRCTGAAISAAVGLLEGCSVNTGSRIMVFT 304 (770)
Q Consensus 229 ---~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~-~~~~~~~~~G~Al~~A~~ll~~~~~~~gGkI~~F~ 304 (770)
+++ |+.+.++||+|++||++.|+++|++|++..|++ .++++.||+|+||++|..+|+.+.++.||||++|+
T Consensus 220 ~~~~~~-----f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~ 294 (769)
T 2nut_A 220 RGPQVQ-----QPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFI 294 (769)
T ss_dssp --------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEE
T ss_pred cccccc-----CCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Confidence 444 522348999999999999999999999976655 67899999999999999999976678999999999
Q ss_pred cCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccccCccee
Q 004188 305 SGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEKSGGF 384 (770)
Q Consensus 305 sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~~TGG~ 384 (770)
+|+||.|||+|+.+++++++|+|+|++|+++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.
T Consensus 295 sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~ 374 (769)
T 2nut_A 295 GGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGY 374 (769)
T ss_dssp SSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCC
T ss_pred CCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCce
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCChhHHHHHHHHHhccCcccccceeeeEEEEEEEcCCceEeeeecCccccccCCCCcCCCccCCCCccceeeec
Q 004188 385 IMIGETFESDQFRKCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKLNT 464 (770)
Q Consensus 385 v~~~~~f~~~~~~~~l~~~l~~~~~~~l~~~~~a~l~vr~S~gl~v~~~~G~~~~~~k~~~~vsd~~~g~g~t~~~~l~~ 464 (770)
+++|++|+.++|.+++++.|+++.++++.+||+|+||||||+|++|++++||++..++|+++++|+|+|.|+|+.|++++
T Consensus 375 ~~~~~~F~~~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~ 454 (769)
T 2nut_A 375 MVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICG 454 (769)
T ss_dssp EEEESCSSSHHHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEE
T ss_pred EEEcCCCchhhHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeec
Confidence 99999999999999999999998888888999999999999999999999999999889999999999999999999999
Q ss_pred CCCCceEEEEEEeccCC--cCCCCCeEEEEEEEEEEecCCcEEEEEEeccccccCCCh---HHHHhccCHHHHHHHHHHH
Q 004188 465 LASKTCIAFFFQVSDEQ--KAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQS---PEIAAGFDQEAAAAIMARL 539 (770)
Q Consensus 465 ~~~~~si~~~f~~~~~~--~l~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~vt~~~~---~~v~~~~D~ea~~~llar~ 539 (770)
+++++||+|+|++++.. ++++...+|||+|++||+.+|+|||||||++++++ ++. .++|+++|+||++++|+|+
T Consensus 455 ~~~d~s~~v~f~~~~~~~~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t-~~~~~~~~v~~~~Dqea~~~llar~ 533 (769)
T 2nut_A 455 LSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWA-DAQTQIQNIAASFDQEAAAILMARL 533 (769)
T ss_dssp ECTTCCEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEEEEEECBC-CGGGHHHHHHHTBCHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEecCccccccCCCCeEEEEEEEEEECCCCCEEEEEEeeccccc-CCcccHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999642 24456889999999999999999999999999999 776 6999999999999999999
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHhcccCCCCCCCcccCcccccHHHHHHHhhccccCCCCCCChhHHHHHHHHHhc
Q 004188 540 AIHRAETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFYLRRSQFIDVFNCTPDETAFFRLMLNR 619 (770)
Q Consensus 540 a~~~~~~~~~~~~~~~l~~~l~~~~~~~~~yr~~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~ 619 (770)
|+.++.+++..++|+||+++|+++|++|+.|||+++++|+||++||+||+|||+|+||++|++++++||||+|+++++++
T Consensus 534 a~~~~~~~~~~d~~~~ld~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~ 613 (769)
T 2nut_A 534 AIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMR 613 (769)
T ss_dssp HHHHHTTC---CHHHHHHHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhhcccccccccCCCCcccccccccccCCeeEEEeCCcEEEEEEcCchhhHhhCCCCCCCcchhHHHHHhccH
Q 004188 620 EGVVGSLIMIQPTLFQYSFDGPPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPE 699 (770)
Q Consensus 620 ~~~~~~~~~iyP~L~~~~~~~~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~~~~~~g~~~~~~~~~~~~~~~~~~ 699 (770)
+++.+++.||||+||++|.++.|++++||+++|++|||||||+|++++||+|+++++|+++||+++|+|+.+++++++|+
T Consensus 614 ~~~~~~~~~iyP~L~~~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~ 693 (769)
T 2nut_A 614 QDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPV 693 (769)
T ss_dssp CCHHHHHHHHSCEEEEECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHH
T ss_pred CCHHHHHHhhcCEEEeccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHH
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEccCCChHHHHHHhhCCCCCCCCccC---CCCcccccCCCcHHHHHHHHHHHHhcC
Q 004188 700 TDAEQLVAERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYK---EGSDVIFTDDLSLEVFIDHLQTLAVQG 770 (770)
Q Consensus 700 ~~~~~l~~~R~~~p~~~~~~~g~~~~r~l~~~L~~~~~~~~~~~---~~~~~~~t~~~S~~~fl~~l~~~~~~~ 770 (770)
++|++|+++|+|+|++++|+||+||+|||++||+|+++|++... .+++.++|||+||++||+||+|++|++
T Consensus 694 ~~a~~i~~~R~p~Pr~i~~~~g~sqaRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~~~~v~~ 767 (769)
T 2nut_A 694 DDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSS 767 (769)
T ss_dssp HHHHHHHHHSSSCCEEEEEETTCSTTHHHHHHCC----------------------CCSHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCCCCeEEEEcCCCcHHHHHHHhcCCcccccCCCcCCCcCCccccccccCHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999876431 236789999999999999999999974
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 770 | ||||
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 1e-76 | |
| d2qtva4 | 142 | d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccha | 5e-72 | |
| d2qtva1 | 103 | a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Sacchar | 5e-55 | |
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 1e-51 | |
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 2e-47 | |
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 3e-13 | |
| d1pd0a1 | 107 | a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar | 2e-25 | |
| d2qtva5 | 75 | g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar | 7e-25 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 1e-14 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 246 bits (629), Expect = 1e-76
Identities = 84/267 (31%), Positives = 146/267 (54%), Gaps = 10/267 (3%)
Query: 148 PAFVFVVDGCMEESEIRAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLV 207
P F FVVD E + ++K ++ + LP NAL+GL+ + ++V +HDL R V
Sbjct: 3 PIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNV 62
Query: 208 FHGGRELSSEQIQHLMGIRCAKQHQLGKTPVIQKQ---------GFLLPVSECEFNVTTA 258
F G RE E + ++ + + + F LP+ + EF +
Sbjct: 63 FRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQL 122
Query: 259 IEEINSLTQRTP-GHRPQRCTGAAISAAVGLLEGCSVNTGSRIMVFTSGPATMGPGIIVD 317
+E ++ P GHRP R TG+A++ A LL+GC N +RI++F SGP T+ PG+IV+
Sbjct: 123 LENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVN 182
Query: 318 TEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVP 377
+E +R+H D+ + HA +Y+K+C FY Q++ R+ + +D+FA DQ+G++E+K
Sbjct: 183 SELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQL 242
Query: 378 VEKSGGFIMIGETFESDQFRKCMRHIF 404
+ +GG +++ + F + F++ +F
Sbjct: 243 TDSTGGVLLLTDAFSTAIFKQSYLRLF 269
|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 142 | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 103 | Back information, alignment and structure |
|---|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 770 | |||
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.94 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.88 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.87 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.86 | |
| d1pd0a1 | 107 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.84 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.84 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.66 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.45 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.21 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 98.05 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 97.94 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 97.9 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 97.72 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 97.72 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 97.67 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 97.6 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 97.56 | |
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 97.54 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.41 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 97.39 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.35 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.25 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 97.07 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 97.0 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 96.96 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 96.9 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 95.29 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4e-54 Score=450.56 Aligned_cols=256 Identities=32% Similarity=0.647 Sum_probs=237.5
Q ss_pred CCcEEEEEEecCcchhHHHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhhhc-
Q 004188 146 LGPAFVFVVDGCMEESEIRAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMG- 224 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~~l~~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~l~- 224 (770)
.||+||||||+|.++++++.++++|+++|+.||++++|||||||+.||||++++..+.+++||+|+++++.+++.+++.
T Consensus 1 ~Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~~~~ 80 (271)
T d2qtva3 1 VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTG 80 (271)
T ss_dssp SCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECSCSSCCEEEEEESSSCCCHHHHHHHHHC
T ss_pred CCCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCcCccceeccCccccCHHHHHHHhhc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999887766553
Q ss_pred -------------ccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCC-CCCCCCcchHHHHHHHHHHhh
Q 004188 225 -------------IRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRT-PGHRPQRCTGAAISAAVGLLE 290 (770)
Q Consensus 225 -------------v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~-~~~~~~~~~G~Al~~A~~ll~ 290 (770)
+.|.+++ ++|.+++|++|++||++.|+++|++|++.+|+. +++++.||+|+||.+|..+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-----~~p~~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~ 155 (271)
T d2qtva3 81 QKPTGPGGAASHLPNAMNKV-----TPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQ 155 (271)
T ss_dssp CC-----------------C-----CTTCGGGGSEEHHHHHHHHHHHHHHCCCCCCCCCTTBCCCCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccc-----cCCccccccccHHHHHHHHHHHHHHhccCcccCCCCCCcccchHHHHHHHHHHHH
Confidence 3344444 677788999999999999999999999988766 788999999999999999998
Q ss_pred cccCCCCcEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccC
Q 004188 291 GCSVNTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVG 370 (770)
Q Consensus 291 ~~~~~~gGkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~ 370 (770)
++..+.||||++|++|+||.|||+|+.++.++.+|+|+|++++++++++++.+||++||.+|+++||+||+|+++.+|+|
T Consensus 156 ~~~~~~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s~~~~d 235 (271)
T d2qtva3 156 GCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIG 235 (271)
T ss_dssp HHCTTSCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCCS
T ss_pred hhccCCCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEecCccCC
Confidence 76778999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred cccccccccCcceeEEEeCCCChhHHHHHHHHHhcc
Q 004188 371 VAELKVPVEKSGGFIMIGETFESDQFRKCMRHIFGH 406 (770)
Q Consensus 371 l~~~~~l~~~TGG~v~~~~~f~~~~~~~~l~~~l~~ 406 (770)
++||++|++.|||.+++|++|+.++|+++|+|+|+|
T Consensus 236 l~~l~~l~~~TGG~v~~~~~F~~~~f~~~l~r~~~r 271 (271)
T d2qtva3 236 MSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 271 (271)
T ss_dssp HHHHTHHHHTTTCCEEEESCTTSHHHHHHHHHTTCB
T ss_pred hHHHHhHHhhCCceEEEeCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999875
|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
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| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
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