Citrus Sinensis ID: 004190
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 770 | 2.2.26 [Sep-21-2011] | |||||||
| Q94KD8 | 768 | Probable beta-D-xylosidas | yes | no | 0.984 | 0.986 | 0.763 | 0.0 | |
| Q9FGY1 | 774 | Beta-D-xylosidase 1 OS=Ar | no | no | 0.974 | 0.968 | 0.684 | 0.0 | |
| Q9FLG1 | 784 | Beta-D-xylosidase 4 OS=Ar | no | no | 0.980 | 0.963 | 0.570 | 0.0 | |
| A5JTQ2 | 774 | Beta-xylosidase/alpha-L-a | N/A | no | 0.949 | 0.944 | 0.577 | 0.0 | |
| Q9LXD6 | 773 | Beta-D-xylosidase 3 OS=Ar | no | no | 0.977 | 0.974 | 0.553 | 0.0 | |
| A5JTQ3 | 774 | Beta-xylosidase/alpha-L-a | N/A | no | 0.970 | 0.965 | 0.553 | 0.0 | |
| Q9LJN4 | 781 | Probable beta-D-xylosidas | no | no | 0.974 | 0.960 | 0.524 | 0.0 | |
| Q9SGZ5 | 767 | Probable beta-D-xylosidas | no | no | 0.946 | 0.950 | 0.466 | 0.0 | |
| Q9LXA8 | 792 | Probable beta-D-xylosidas | no | no | 0.972 | 0.945 | 0.462 | 0.0 | |
| P83344 | 461 | Putative beta-D-xylosidas | N/A | no | 0.596 | 0.995 | 0.718 | 0.0 |
| >sp|Q94KD8|BXL2_ARATH Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1243 bits (3217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/765 (76%), Positives = 668/765 (87%), Gaps = 7/765 (0%)
Query: 9 FLGLIL---LSASSSGLAAREPFACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEK 65
FL +IL +S+SS + +RE FACD KDA T TL FCQ+S+PIP+RV DLIGRL+L EK
Sbjct: 8 FLAVILFFLISSSSVCVHSRETFACDTKDAATATLRFCQLSVPIPERVRDLIGRLTLAEK 67
Query: 66 VKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNA 125
V LL + AAA+PRLGIKGYEWWSEALHGVSNVGPGTKFGG +P ATSFPQVITT +SFNA
Sbjct: 68 VSLLGNTAAAIPRLGIKGYEWWSEALHGVSNVGPGTKFGGVYPAATSFPQVITTVASFNA 127
Query: 126 TLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAAS 185
+LWE+IGRVVS+EARAMYNGG GLTYWSPNVNI RDPRWGRGQETPGEDPV++GKYAAS
Sbjct: 128 SLWESIGRVVSNEARAMYNGGVGGLTYWSPNVNILRDPRWGRGQETPGEDPVVAGKYAAS 187
Query: 186 YVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVM 245
YVRGLQG+D RLKVAA CKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCV
Sbjct: 188 YVRGLQGNDRSRLKVAACCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVK 247
Query: 246 EGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTP 305
EG VAS+MCSYNQVNGVPTCADPN+LK+TIR +W LNGYIVSDCDSVGV YDTQH+T TP
Sbjct: 248 EGNVASIMCSYNQVNGVPTCADPNLLKKTIRNQWGLNGYIVSDCDSVGVLYDTQHYTGTP 307
Query: 306 EEAAADAIRAGLDLDCGPFLGLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPS 365
EEAAAD+I+AGLDLDCGPFLG HT AV++ LL E D++NAL+NTLTVQMRLGMFDG+ +
Sbjct: 308 EEAAADSIKAGLDLDCGPFLGAHTIDAVKKNLLRESDVDNALINTLTVQMRLGMFDGDIA 367
Query: 366 SQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTV 425
+QPYGHLGP VCTP H+ LALEAA+QGIVLLKN G SLPLS RHRTVAVIGPNSD TV
Sbjct: 368 AQPYGHLGPAHVCTPVHKGLALEAAQQGIVLLKNHGSSLPLSSQRHRTVAVIGPNSDATV 427
Query: 426 TMIGNYAGIACGYTTPLQGIGRYARTIHQQGCKDVACADDQLFGAAIDASRQADATILVM 485
TMIGNYAG+ACGYT+P+QGI YARTIHQ+GC DV C DD+LF AA++A+R ADAT+LVM
Sbjct: 428 TMIGNYAGVACGYTSPVQGITGYARTIHQKGCVDVHCMDDRLFDAAVEAARGADATVLVM 487
Query: 486 GLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAA 545
GLDQSIEAE DR LLLPG+QQELVS+V+ A+KGP ILVLMSGGPID++FA+ D +I A
Sbjct: 488 GLDQSIEAEFKDRNSLLLPGKQQELVSRVAKAAKGPVILVLMSGGPIDISFAEKDRKIPA 547
Query: 546 IIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYPQEYITNLPMTEMAMRPSQSKRYPGR 605
I+WAGYPGQ GGTAIADILFG++NPGGKLPMTWYPQ+Y+TNLPMTEM+MRP SKR PGR
Sbjct: 548 IVWAGYPGQEGGTAIADILFGSANPGGKLPMTWYPQDYLTNLPMTEMSMRPVHSKRIPGR 607
Query: 606 TYRFYKGPVVYPFGHGMSYTNFVHTVANAPTVVAVPLDGRHGSINATISGKAIKVTHAKC 665
TYRFY GPVVYPFGHG+SYT F H +A+AP V+ + + GR+G T+SGK+I+VTHA+C
Sbjct: 608 TYRFYDGPVVYPFGHGLSYTRFTHNIADAPKVIPIAVRGRNG----TVSGKSIRVTHARC 663
Query: 666 NRLTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINI 725
+RL+LGV V+V NVGS+DG HT+LVFS PP G WAP KQLVAFE+VHV G ++RV +NI
Sbjct: 664 DRLSLGVHVEVTNVGSRDGTHTMLVFSAPPGGEWAPKKQLVAFERVHVAVGEKKRVQVNI 723
Query: 726 HVCKYLSVVDRSGTRRIPLGEHNIHIGGTKHSVSLHAATLGVIKS 770
HVCKYLSVVDR+G RRIP+G+H IHIG H+VSL A+TLGVIKS
Sbjct: 724 HVCKYLSVVDRAGNRRIPIGDHGIHIGDESHTVSLQASTLGVIKS 768
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May be involved in remodeling of xylans during vascular development. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9FLG1|BXL4_ARATH Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1 | Back alignment and function description |
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| >sp|A5JTQ2|XYL1_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subsp. varia GN=Xyl1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LXD6|BXL3_ARATH Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1 | Back alignment and function description |
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| >sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LJN4|BXL5_ARATH Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LXA8|BXL6_ARATH Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1 | Back alignment and function description |
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| >sp|P83344|XYNB_PRUPE Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 770 | ||||||
| 255548487 | 768 | Beta-glucosidase, putative [Ricinus comm | 0.968 | 0.971 | 0.831 | 0.0 | |
| 225437531 | 768 | PREDICTED: probable beta-D-xylosidase 2 | 0.988 | 0.990 | 0.782 | 0.0 | |
| 356534827 | 771 | PREDICTED: probable beta-D-xylosidase 2- | 0.972 | 0.971 | 0.800 | 0.0 | |
| 356501877 | 772 | PREDICTED: probable beta-D-xylosidase 2- | 0.972 | 0.970 | 0.800 | 0.0 | |
| 356503923 | 775 | PREDICTED: probable beta-D-xylosidase 2- | 0.994 | 0.988 | 0.774 | 0.0 | |
| 357442285 | 765 | Beta xylosidase [Medicago truncatula] gi | 0.983 | 0.989 | 0.780 | 0.0 | |
| 357511337 | 771 | Beta-xylosidase [Medicago truncatula] gi | 0.997 | 0.996 | 0.774 | 0.0 | |
| 356572781 | 771 | PREDICTED: probable beta-D-xylosidase 2- | 0.970 | 0.968 | 0.785 | 0.0 | |
| 18378991 | 768 | beta-glucosidase [Arabidopsis thaliana] | 0.984 | 0.986 | 0.763 | 0.0 | |
| 9972374 | 763 | Similar to xylosidase [Arabidopsis thali | 0.984 | 0.993 | 0.763 | 0.0 |
| >gi|255548487|ref|XP_002515300.1| Beta-glucosidase, putative [Ricinus communis] gi|223545780|gb|EEF47284.1| Beta-glucosidase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1327 bits (3435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/748 (83%), Positives = 680/748 (90%), Gaps = 2/748 (0%)
Query: 23 AAREPFACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIK 82
AA EPFACD KD TT+ LPFCQV LPI RV DLIGRL+L EKV LL++ A AV RLGIK
Sbjct: 23 AALEPFACDSKDGTTKNLPFCQVKLPIQDRVKDLIGRLTLAEKVGLLVNNAGAVSRLGIK 82
Query: 83 GYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAM 142
GYEWWSEALHGVSNVGPGTKFGG FPGATSFPQVITTA+SFN+TLWEAIGRVVSDEARAM
Sbjct: 83 GYEWWSEALHGVSNVGPGTKFGGSFPGATSFPQVITTAASFNSTLWEAIGRVVSDEARAM 142
Query: 143 YNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAA 202
YNGG AGLTYWSPNVNI RDPRWGRGQETPGEDP+L GKYAASYV+GLQG+DG+RLKVAA
Sbjct: 143 YNGGAAGLTYWSPNVNILRDPRWGRGQETPGEDPLLVGKYAASYVKGLQGNDGERLKVAA 202
Query: 203 SCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGV 262
CKHFTAYDLDNWNGVDRFHFNAKVSKQD++DTFDVPFRMCV EGKVASVMCSYNQVNG+
Sbjct: 203 CCKHFTAYDLDNWNGVDRFHFNAKVSKQDMKDTFDVPFRMCVKEGKVASVMCSYNQVNGI 262
Query: 263 PTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG 322
PTCADPN+L++T+R +W LNGYIVSDCDSVGV+YD QH+TSTPEEAAADAI+AGLDLDCG
Sbjct: 263 PTCADPNLLRKTVRTQWGLNGYIVSDCDSVGVFYDKQHYTSTPEEAAADAIKAGLDLDCG 322
Query: 323 PFLGLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDH 382
PFL +HT+ AV+RGL+SE D+N AL NTLTVQMRLGMFDGEPS+QPYG+LGPKDVCTP H
Sbjct: 323 PFLAVHTQDAVKRGLISEADVNGALFNTLTVQMRLGMFDGEPSAQPYGNLGPKDVCTPAH 382
Query: 383 QELALEAARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYTTPL 442
QELALEA RQGIVLLKN GPSLPLS RHRTVA+IGPNS+VTVTMIGNYAG+AC YTTPL
Sbjct: 383 QELALEAGRQGIVLLKNHGPSLPLSPRRHRTVAIIGPNSNVTVTMIGNYAGVACQYTTPL 442
Query: 443 QGIGRYARTIHQQGCKDVACADDQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLL 502
QGIG YA+TIHQQGC DV C DQLF AIDA+RQADAT+LVMGLDQSIEAE DR GLL
Sbjct: 443 QGIGSYAKTIHQQGCADVGCVTDQLFSGAIDAARQADATVLVMGLDQSIEAEFRDRTGLL 502
Query: 503 LPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIAD 562
LPGRQQELVSKV+MASKGPTILVLMSGGPIDV+FAK DP+IAAI+WAGYPGQAGG AIAD
Sbjct: 503 LPGRQQELVSKVAMASKGPTILVLMSGGPIDVSFAKKDPKIAAILWAGYPGQAGGAAIAD 562
Query: 563 ILFGTSNPGGKLPMTWYPQEYITNLPMTEMAMRPSQSKRYPGRTYRFYKGPVVYPFGHGM 622
+LFGT NPGGKLPMTWYPQEYITNLPMTEMAMR SQSK YPGRTYRFY+G VVYPFGHGM
Sbjct: 563 VLFGTINPGGKLPMTWYPQEYITNLPMTEMAMRSSQSKGYPGRTYRFYQGKVVYPFGHGM 622
Query: 623 SYTNFVHTVANAPTVVAVPLDGRHGSINATISGKAIKVTHAKCNRLTLGVQVDVKNVGSK 682
SYT+FVH +A+APT+V+VPLDG G N +ISGKAI+VTH KCN+L+LG+QVDVKNVGSK
Sbjct: 623 SYTHFVHNIASAPTMVSVPLDGHRG--NTSISGKAIRVTHTKCNKLSLGIQVDVKNVGSK 680
Query: 683 DGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRI 742
DG HTLLV+S PPAG W+PHKQLVAFE+VHV AG Q+RVGI+IHVCK LSVVDRSG RRI
Sbjct: 681 DGTHTLLVYSAPPAGRWSPHKQLVAFERVHVSAGTQERVGISIHVCKLLSVVDRSGIRRI 740
Query: 743 PLGEHNIHIGGTKHSVSLHAATLGVIKS 770
P+GEH+IHIG KHSVSL A LGV+KS
Sbjct: 741 PIGEHSIHIGNVKHSVSLQATVLGVVKS 768
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437531|ref|XP_002270249.1| PREDICTED: probable beta-D-xylosidase 2 [Vitis vinifera] gi|297743965|emb|CBI36935.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356534827|ref|XP_003535953.1| PREDICTED: probable beta-D-xylosidase 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356501877|ref|XP_003519750.1| PREDICTED: probable beta-D-xylosidase 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356503923|ref|XP_003520749.1| PREDICTED: probable beta-D-xylosidase 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357442285|ref|XP_003591420.1| Beta xylosidase [Medicago truncatula] gi|355480468|gb|AES61671.1| Beta xylosidase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357511337|ref|XP_003625957.1| Beta-xylosidase [Medicago truncatula] gi|355500972|gb|AES82175.1| Beta-xylosidase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356572781|ref|XP_003554544.1| PREDICTED: probable beta-D-xylosidase 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|18378991|ref|NP_563659.1| beta-glucosidase [Arabidopsis thaliana] gi|75250279|sp|Q94KD8.1|BXL2_ARATH RecName: Full=Probable beta-D-xylosidase 2; Short=AtBXL2; Flags: Precursor gi|14194121|gb|AAK56255.1|AF367266_1 At1g02640/T14P4_11 [Arabidopsis thaliana] gi|23506063|gb|AAN28891.1| At1g02640/T14P4_11 [Arabidopsis thaliana] gi|332189332|gb|AEE27453.1| beta-glucosidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|9972374|gb|AAG10624.1|AC022521_2 Similar to xylosidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 770 | ||||||
| TAIR|locus:2196060 | 768 | BXL2 "beta-xylosidase 2" [Arab | 0.963 | 0.966 | 0.766 | 0.0 | |
| TAIR|locus:2157994 | 774 | BXL1 "beta-xylosidase 1" [Arab | 0.948 | 0.943 | 0.696 | 2.9e-284 | |
| TAIR|locus:2174809 | 784 | XYL4 "beta-D-xylosidase 4" [Ar | 0.946 | 0.929 | 0.577 | 5.3e-230 | |
| TAIR|locus:2144756 | 773 | BXL3 "AT5G09730" [Arabidopsis | 0.946 | 0.943 | 0.560 | 6.3e-227 | |
| TAIR|locus:2091236 | 781 | AT3G19620 [Arabidopsis thalian | 0.946 | 0.933 | 0.528 | 2.8e-217 | |
| TAIR|locus:2029391 | 767 | AT1G78060 [Arabidopsis thalian | 0.941 | 0.945 | 0.466 | 1.7e-194 | |
| TAIR|locus:2142434 | 792 | AT5G10560 [Arabidopsis thalian | 0.768 | 0.747 | 0.444 | 8.2e-190 | |
| UNIPROTKB|P83344 | 461 | P83344 "Putative beta-D-xylosi | 0.596 | 0.995 | 0.702 | 7.5e-176 | |
| ASPGD|ASPL0000029139 | 763 | bxlB [Emericella nidulans (tax | 0.771 | 0.778 | 0.408 | 5.2e-120 | |
| UNIPROTKB|Q5ATH9 | 763 | bxlB "Exo-1,4-beta-xylosidase | 0.771 | 0.778 | 0.408 | 5.2e-120 |
| TAIR|locus:2196060 BXL2 "beta-xylosidase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3097 (1095.3 bits), Expect = 0., P = 0.
Identities = 572/746 (76%), Positives = 647/746 (86%)
Query: 25 REPFACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGY 84
RE FACD KDA T TL FCQ+S+PIP+RV DLIGRL+L EKV LL + AAA+PRLGIKGY
Sbjct: 27 RETFACDTKDAATATLRFCQLSVPIPERVRDLIGRLTLAEKVSLLGNTAAAIPRLGIKGY 86
Query: 85 EWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYN 144
EWWSEALHGVSNVGPGTKFGG +P ATSFPQVITT +SFNA+LWE+IGRVVS+EARAMYN
Sbjct: 87 EWWSEALHGVSNVGPGTKFGGVYPAATSFPQVITTVASFNASLWESIGRVVSNEARAMYN 146
Query: 145 GGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASC 204
GG GLTYWSPNVNI RDPRWGRGQETPGEDPV++GKYAASYVRGLQG+D RLKVAA C
Sbjct: 147 GGVGGLTYWSPNVNILRDPRWGRGQETPGEDPVVAGKYAASYVRGLQGNDRSRLKVAACC 206
Query: 205 KHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPT 264
KHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCV EG VAS+MCSYNQVNGVPT
Sbjct: 207 KHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVKEGNVASIMCSYNQVNGVPT 266
Query: 265 CADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPF 324
CADPN+LK+TIR +W LNGYIVSDCDSVGV YDTQH+T TPEEAAAD+I+AGLDLDCGPF
Sbjct: 267 CADPNLLKKTIRNQWGLNGYIVSDCDSVGVLYDTQHYTGTPEEAAADSIKAGLDLDCGPF 326
Query: 325 LGLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQE 384
LG HT AV++ LL E D++NAL+NTLTVQMRLGMFDG+ ++QPYGHLGP VCTP H+
Sbjct: 327 LGAHTIDAVKKNLLRESDVDNALINTLTVQMRLGMFDGDIAAQPYGHLGPAHVCTPVHKG 386
Query: 385 LALEAARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYTTPLQG 444
LALEAA+QGIVLLKN G SLPLS RHRTVAVIGPNSD TVTMIGNYAG+ACGYT+P+QG
Sbjct: 387 LALEAAQQGIVLLKNHGSSLPLSSQRHRTVAVIGPNSDATVTMIGNYAGVACGYTSPVQG 446
Query: 445 IGRYARTIHQQGCKDVACADDQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLP 504
I YARTIHQ+GC DV C DD+LF AA++A+R ADAT+LVMGLDQSIEAE DR LLLP
Sbjct: 447 ITGYARTIHQKGCVDVHCMDDRLFDAAVEAARGADATVLVMGLDQSIEAEFKDRNSLLLP 506
Query: 505 GRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADIL 564
G+QQELVS+V+ A+KGP ILVLMSGGPID++FA+ D +I AI+WAGYPGQ GGTAIADIL
Sbjct: 507 GKQQELVSRVAKAAKGPVILVLMSGGPIDISFAEKDRKIPAIVWAGYPGQEGGTAIADIL 566
Query: 565 FGTSNPGGKLPMTWYPQEYITNLPMTEMAMRPSQSKRYPGRTYRFYKGPVVYPFGHGMSY 624
FG++NPGGKLPMTWYPQ+Y+TNLPMTEM+MRP SKR PGRTYRFY GPVVYPFGHG+SY
Sbjct: 567 FGSANPGGKLPMTWYPQDYLTNLPMTEMSMRPVHSKRIPGRTYRFYDGPVVYPFGHGLSY 626
Query: 625 TNFXXXXXXXXXXXXXXLDGRHGSINATISGKAIKVTHAKCNRLTLGVQVDVKNVGSKDG 684
T F + GR+G T+SGK+I+VTHA+C+RL+LGV V+V NVGS+DG
Sbjct: 627 TRFTHNIADAPKVIPIAVRGRNG----TVSGKSIRVTHARCDRLSLGVHVEVTNVGSRDG 682
Query: 685 AHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPL 744
HT+LVFS PP G WAP KQLVAFE+VHV G ++RV +NIHVCKYLSVVDR+G RRIP+
Sbjct: 683 THTMLVFSAPPGGEWAPKKQLVAFERVHVAVGEKKRVQVNIHVCKYLSVVDRAGNRRIPI 742
Query: 745 GEHNIHIGGTKHSVSLHAATLGVIKS 770
G+H IHIG H+VSL A+TLGVIKS
Sbjct: 743 GDHGIHIGDESHTVSLQASTLGVIKS 768
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| TAIR|locus:2157994 BXL1 "beta-xylosidase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174809 XYL4 "beta-D-xylosidase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2144756 BXL3 "AT5G09730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2091236 AT3G19620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2029391 AT1G78060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2142434 AT5G10560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P83344 P83344 "Putative beta-D-xylosidase" [Prunus persica (taxid:3760)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000029139 bxlB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ATH9 bxlB "Exo-1,4-beta-xylosidase bxlB" [Aspergillus nidulans FGSC A4 (taxid:227321)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A2QA27 | XYND_ASPNC | 3, ., 2, ., 1, ., 3, 7 | 0.3513 | 0.8935 | 0.8557 | yes | no |
| O00089 | XYND_ASPNG | 3, ., 2, ., 1, ., 3, 7 | 0.3513 | 0.8935 | 0.8557 | yes | no |
| Q94KD8 | BXL2_ARATH | 3, ., 2, ., 1, ., - | 0.7633 | 0.9844 | 0.9869 | yes | no |
| Q5BAS1 | XYND_EMENI | 3, ., 2, ., 1, ., 3, 7 | 0.3643 | 0.9012 | 0.8642 | yes | no |
| A5JTQ3 | XYL2_MEDSV | 3, ., 2, ., 1, ., 5, 5 | 0.5538 | 0.9701 | 0.9651 | N/A | no |
| A5JTQ2 | XYL1_MEDSV | 3, ., 2, ., 1, ., 5, 5 | 0.5772 | 0.9493 | 0.9444 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.2.1.37 | 0.946 |
| 3rd Layer | 3.2.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 770 | |||
| PLN03080 | 779 | PLN03080, PLN03080, Probable beta-xylosidase; Prov | 0.0 | |
| PRK15098 | 765 | PRK15098, PRK15098, beta-D-glucoside glucohydrolas | 2e-83 | |
| pfam01915 | 221 | pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase fam | 6e-62 | |
| pfam00933 | 296 | pfam00933, Glyco_hydro_3, Glycosyl hydrolase famil | 4e-59 | |
| COG1472 | 397 | COG1472, BglX, Beta-glucosidase-related glycosidas | 3e-53 | |
| pfam14310 | 71 | pfam14310, Fn3-like, Fibronectin type III-like dom | 7e-11 |
| >gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional | Back alignment and domain information |
|---|
Score = 887 bits (2293), Expect = 0.0
Identities = 373/782 (47%), Positives = 507/782 (64%), Gaps = 25/782 (3%)
Query: 1 MASTIAFFFLGLILLSASSSGLAAREPFACDPKDATTRTLPFCQVSLPIPQRVNDLIGRL 60
F L L+ L A+ A F C P T PFC SLPIP R L+ L
Sbjct: 3 TQLRPLFLLLFLLALGATFKAADAHPQFPCKP--PTFSAYPFCNASLPIPARARSLVSLL 60
Query: 61 SLQEKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGTKF-GGDFPGATSFPQVITT 119
+L EK+ L + AA VPRLGI YEWWSE+LHG+++ GPG F G ATSFPQVI +
Sbjct: 61 TLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNGPGVSFNSGPVSAATSFPQVILS 120
Query: 120 ASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLS 179
A+SFN +LW AIG ++ EARAMYN G AGLT+W+PN+NIFRDPRWGRGQETPGEDP ++
Sbjct: 121 AASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVA 180
Query: 180 GKYAASYVRGLQG---------SDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQ 230
Y+ +V+G QG + +L ++A CKH+TAYDL+ W R+ FNA V++Q
Sbjct: 181 SAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQ 240
Query: 231 DIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCD 290
D+EDT+ PF+ C+ EGK + +MCSYNQVNGVP CA ++L++ R EW GYI SDCD
Sbjct: 241 DMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQKA-RDEWGFQGYITSDCD 299
Query: 291 SVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFLGLHTESAVQRGLLSEIDINNALVNT 350
+V ++ Q +T +PE+A AD ++AG+D++CG ++ HT+SA+++G + E DI+ AL N
Sbjct: 300 AVATIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNL 359
Query: 351 LTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGPSLPLSHIR 410
+VQ+RLG+FDG+P + YG LGP +VCT +H+ELALEAARQGIVLLKN LPL+
Sbjct: 360 FSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSE 419
Query: 411 HRTVAVIGPNSDVTVTMIGNYAGIACGYTTPLQGIGRYA-RTIHQQGCKDVACADDQLFG 469
++A+IGP ++ + G+Y G+ C TT +G+ Y +T GCKDV+C D FG
Sbjct: 420 VSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFG 479
Query: 470 AAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSG 529
AI +++AD ++V GLD S E E DR LLLPG+Q +L+S V+ SK P +LVL G
Sbjct: 480 EAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGG 539
Query: 530 GPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYPQEYITNLPM 589
GP+DV+FAK DPRIA+I+W GYPG+ GG A+A+I+FG NPGG+LPMTWYP+ + T +PM
Sbjct: 540 GPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPM 598
Query: 590 TEMAMRPSQSKRYPGRTYRFYKGPVVYPFGHGMSYTNFVHTVANAPTVVAV----PLDGR 645
T+M MR S+ YPGRTYRFY G VVY FG+G+SYT F + + +AP +++ D
Sbjct: 599 TDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSI 658
Query: 646 HGSINATISGKAIKVTH----AKCNRLTLGVQVDVKNVGSKDGAHTLLVFS-TPPAGHWA 700
+ A C L V + V NVG DG+H +++FS +PP
Sbjct: 659 S-RKPLLQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGV 717
Query: 701 PHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGEHNIHIGGTKHSVSL 760
P KQLV F++VH +G I + CK+LSV + G R +PLG+H + +G +HS+S+
Sbjct: 718 PEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSI 777
Query: 761 HA 762
Sbjct: 778 EI 779
|
Length = 779 |
| >gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|216204 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|222669 pfam14310, Fn3-like, Fibronectin type III-like domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 770 | |||
| PLN03080 | 779 | Probable beta-xylosidase; Provisional | 100.0 | |
| PRK15098 | 765 | beta-D-glucoside glucohydrolase; Provisional | 100.0 | |
| COG1472 | 397 | BglX Beta-glucosidase-related glycosidases [Carboh | 100.0 | |
| PF00933 | 299 | Glyco_hydro_3: Glycosyl hydrolase family 3 N termi | 100.0 | |
| PRK05337 | 337 | beta-hexosaminidase; Provisional | 100.0 | |
| PF01915 | 227 | Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-ter | 100.0 | |
| PF14310 | 71 | Fn3-like: Fibronectin type III-like domain; PDB: 3 | 99.8 | |
| PF07705 | 101 | CARDB: CARDB; InterPro: IPR011635 The APHP (acidic | 96.05 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.31 | |
| PF12690 | 82 | BsuPI: Intracellular proteinase inhibitor; InterPr | 93.3 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 88.57 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 88.56 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 81.24 |
| >PLN03080 Probable beta-xylosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-166 Score=1464.75 Aligned_cols=737 Identities=50% Similarity=0.949 Sum_probs=645.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCHHHHHHHhcCCCCCCCCCCCchhhhHhhhhccccccCCCc
Q 004190 22 LAAREPFACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGT 101 (770)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~rv~~ll~~MTleEKi~ql~~~~~~~~rlgip~~~~~~~~~~g~~~~~~g~ 101 (770)
.....+.+|+ +.+...+||||+++++++|+++||++||||||++||.+.+.+++|||||.+.||+|++||++..++|+
T Consensus 24 ~~~~~~~~c~--~~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~d~~hGv~~~~~g~ 101 (779)
T PLN03080 24 ADAHPQFPCK--PPTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNGPGV 101 (779)
T ss_pred ccCCCCcCCC--CccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceecccccccccCCCcc
Confidence 3335667797 35677799999999999999999999999999999998889999999999999999999998888888
Q ss_pred ccC-CCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHhhcCCCCcceEecccccccCCCCCCccCCCCCCChHHHH
Q 004190 102 KFG-GDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSG 180 (770)
Q Consensus 102 ~~~-~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~g~~G~~~laP~~dl~r~p~~gr~~e~fgeDP~l~~ 180 (770)
++. +.+.++|.||++|++|||||++|++++|+++|+|+|+++|.+..|+++|+|++||+|||||||++|||||||+|++
T Consensus 102 ~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~ 181 (779)
T PLN03080 102 SFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVAS 181 (779)
T ss_pred ccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccCcCCCHHHHH
Confidence 774 3345789999999999999999999999999999999976655577889999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC---------CCcceeEEeecccccccCCCCCCCcccccccccCHHHHHhhccHHHHHHHHcCCccE
Q 004190 181 KYAASYVRGLQGSD---------GDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVAS 251 (770)
Q Consensus 181 ~~~~a~v~G~Q~~~---------g~~~~v~a~~KHFpg~~~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~ai~~g~~~~ 251 (770)
+|+.|||+|+|+.. .++.+|+||+||||||+++.+.+..|...++.+++++|+|+||+||++||++|.+++
T Consensus 182 ~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~ 261 (779)
T PLN03080 182 AYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASC 261 (779)
T ss_pred HHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeE
Confidence 99999999999821 123469999999999999877777888889999999999999999999999998889
Q ss_pred EEecccCCCCcccccCHHHHHHhhhcccccceEEEcCchhhccccccccccCChHHHHHHHHHcCCCcCCCcchhHHHHH
Q 004190 252 VMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFLGLHTES 331 (770)
Q Consensus 252 vM~sy~~vng~pa~~s~~ll~~lLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~~~~l~~ 331 (770)
||||||++||+|||.|++||++ ||+||||+|+|||||++|..+.+.|++..+.+|++++||+||+||+|...+.+.|.+
T Consensus 262 VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~ 340 (779)
T PLN03080 262 LMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQS 340 (779)
T ss_pred EEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHH
Confidence 9999999999999999999986 999999999999999999999888888788999999999999999998877789999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCccCChhhHHHHHHHHhhceeeeccCCCCCCcccCCc
Q 004190 332 AVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGPSLPLSHIRH 411 (770)
Q Consensus 332 av~~G~i~~~~ld~av~RiL~~k~~~Gl~~~~p~~~~~~~~~~~~v~~~~h~~la~~aA~esiVLLKN~~~~LPL~~~~~ 411 (770)
||++|+|+|++||+||+|||++|+++|+|+.+|...+|.++....+++++|+++|+|+|++|||||||++++|||++.+.
T Consensus 341 av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~ 420 (779)
T PLN03080 341 AIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEV 420 (779)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCC
Confidence 99999999999999999999999999999954433345554456788999999999999999999999999999987655
Q ss_pred ceEEEEccCCCCceeecccccccCCCcCCHHHHHHhhh-eeeeeeccCcccCCchhhHHHHHHHhhccCEEEEEeCCCcc
Q 004190 412 RTVAVIGPNSDVTVTMIGNYAGIACGYTTPLQGIGRYA-RTIHQQGCKDVACADDQLFGAAIDASRQADATILVMGLDQS 490 (770)
Q Consensus 412 ~kIaviG~~a~~~~~~~G~~~g~~~~~~t~~~gl~~~~-~~~~~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~vG~~~~ 490 (770)
++|+||||+|+....++|+|++.+++.++++++|+++. .+.|..||....+.+...+++++++|++||+|||++|.+..
T Consensus 421 ~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~ 500 (779)
T PLN03080 421 SSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLS 500 (779)
T ss_pred CEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCcc
Confidence 79999999999988888889998889999999999975 57899998655444556788999999999999999999988
Q ss_pred ccccccccCCCCCChhHHHHHHHHHhhCCCCEEEEEecCCeeeeccccCCCCcceEEeccCCCchhHHHHHHHHcCCCCC
Q 004190 491 IEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNP 570 (770)
Q Consensus 491 ~~~Eg~Dr~~l~Lp~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~e~g~AladVL~G~~nP 570 (770)
.++|+.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+.+.++++||||+|||||++|+|+||||||++||
T Consensus 501 ~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnP 580 (779)
T PLN03080 501 QETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNP 580 (779)
T ss_pred ccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCC
Confidence 89999999999999999999999998777899999999999999998766789999999999999999999999999999
Q ss_pred CcccccccCCccccCCCCccccCCCCCCCCCCCCCcccccCCCcccccCcCCCCCCceecccccCccccccCCC--C-CC
Q 004190 571 GGKLPMTWYPQEYITNLPMTEMAMRPSQSKRYPGRTYRFYKGPVVYPFGHGMSYTNFVHTVANAPTVVAVPLDG--R-HG 647 (770)
Q Consensus 571 sGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~lypFG~GLSYTtF~ys~~~~~~~~~~~~~~--~-~~ 647 (770)
|||||+||||+++ .++|++++++++++..+|++++||||+.+|+||||||||||||+|++++++..+.++... . +.
T Consensus 581 sGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~ 659 (779)
T PLN03080 581 GGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSIS 659 (779)
T ss_pred CCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEeccccccccccccccccccccc
Confidence 9999999988886 579998888887666778999999999999999999999999999998754322121100 0 00
Q ss_pred ccccccccc---cccccc-ccCCceeEEEEEEEEeCCCCCcceEEEEEEeCCCC-CCCcccccccccceecCCCCeEEEE
Q 004190 648 SINATISGK---AIKVTH-AKCNRLTLGVQVDVKNVGSKDGAHTLLVFSTPPAG-HWAPHKQLVAFEKVHVPAGAQQRVG 722 (770)
Q Consensus 648 ~~~~~~~~~---~~~~~~-~~~~~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~-~~~P~k~L~gF~kv~L~pGes~~V~ 722 (770)
......... ...... ..|++..++|+|+|||||+++|+||||||+++|.+ ..+|+|||+||+||+|+|||+++|+
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~ 739 (779)
T PLN03080 660 RKPLLQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETE 739 (779)
T ss_pred cccccccccccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEE
Confidence 000000000 000000 12332369999999999999999999999999976 5689999999999999999999999
Q ss_pred EEeccCCCeeEEeCCCcEEeeCeEEEEEEeCCCCeEEEEE
Q 004190 723 INIHVCKYLSVVDRSGTRRIPLGEHNIHIGGTKHSVSLHA 762 (770)
Q Consensus 723 ~~l~~~~~ls~~d~~~~~~~~~G~y~~~vG~ss~~~~~~~ 762 (770)
|+|+++++|++||++++|++|+|+|+|+||+++|+++|++
T Consensus 740 ~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 740 IVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred EEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 9999656899999999999999999999999999999874
|
|
| >PRK15098 beta-D-glucoside glucohydrolase; Provisional | Back alignment and domain information |
|---|
| >COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >PRK05337 beta-hexosaminidase; Provisional | Back alignment and domain information |
|---|
| >PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3 | Back alignment and domain information |
|---|
| >PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A | Back alignment and domain information |
|---|
| >PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins | Back alignment and domain information |
|---|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
| >PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo | Back alignment and domain information |
|---|
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 770 | ||||
| 2x40_A | 721 | Structure Of Beta-Glucosidase 3b From Thermotoga Ne | 2e-44 | ||
| 2x42_A | 721 | Structure Of Beta-Glucosidase 3b From Thermotoga Ne | 1e-43 | ||
| 4i3g_A | 829 | Crystal Structure Of Desr, A Beta-glucosidase From | 8e-33 | ||
| 4i3g_A | 829 | Crystal Structure Of Desr, A Beta-glucosidase From | 1e-13 | ||
| 3usz_A | 822 | Crystal Structure Of Truncated Exo-1,31,4-Beta-Gluc | 2e-31 | ||
| 3rrx_A | 822 | Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Bet | 3e-31 | ||
| 1lq2_A | 602 | Crystal Structure Of Barley Beta-D-Glucan Glucohydr | 1e-30 | ||
| 1ex1_A | 605 | Beta-D-Glucan Exohydrolase From Barley Length = 605 | 2e-30 | ||
| 3zyz_A | 713 | Crystal Structure Of A Glycoside Hydrolase Family 3 | 3e-30 | ||
| 4i8d_A | 714 | Crystal Structure Of Beta-D-Glucoside Glucohydrolas | 5e-30 | ||
| 3ac0_A | 845 | Crystal Structure Of Beta-Glucosidase From Kluyvero | 1e-28 | ||
| 3ac0_A | 845 | Crystal Structure Of Beta-Glucosidase From Kluyvero | 8e-23 | ||
| 3abz_A | 845 | Crystal Structure Of Se-Met Labeled Beta-Glucosidas | 3e-25 | ||
| 3abz_A | 845 | Crystal Structure Of Se-Met Labeled Beta-Glucosidas | 1e-22 | ||
| 3bmx_A | 642 | Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis | 2e-07 | ||
| 4gyj_A | 648 | Crystal Structure Of Mutant (D318n) Bacillus Subtil | 5e-07 | ||
| 3lk6_A | 616 | Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) Fro | 7e-07 |
| >pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol Length = 721 | Back alignment and structure |
|
| >pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose Length = 721 | Back alignment and structure |
| >pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 | Back alignment and structure |
| >pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 | Back alignment and structure |
| >pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 | Back alignment and structure |
| >pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 | Back alignment and structure |
| >pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole Length = 602 | Back alignment and structure |
| >pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley Length = 605 | Back alignment and structure |
| >pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3 Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a Resolution. Length = 713 | Back alignment and structure |
| >pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei Length = 714 | Back alignment and structure |
| >pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 | Back alignment and structure |
| >pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 | Back alignment and structure |
| >pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 | Back alignment and structure |
| >pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 | Back alignment and structure |
| >pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis Length = 642 | Back alignment and structure |
| >pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus Family 3 Glycoside Hydrolase (Nagz) In Complex With Glcnac-Murnac (Space Group P1) Length = 648 | Back alignment and structure |
| >pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From Bacillus Subtilis Length = 616 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 | Back alignment and structure |
|---|
Score = 486 bits (1252), Expect = e-162
Identities = 178/779 (22%), Positives = 300/779 (38%), Gaps = 156/779 (20%)
Query: 51 QRVNDLIGRLSLQEKVKLLISGA--------------------AAVPRLGIKGYEWWSEA 90
++VN+++ +L+L+EKVKL+ G VPR+G+ + ++
Sbjct: 2 EKVNEILSQLTLEEKVKLV-VGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-VLADG 59
Query: 91 LHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGL 150
G+ + P + + T+FP I AS++N L E +G+ + +E R G L
Sbjct: 60 PAGLR-INPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVREY--GVDVLL 116
Query: 151 TYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAY 210
+P +NI R+P GR E EDPVLSG+ A+S+V+G+Q V A KHF A
Sbjct: 117 ---APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVAN 168
Query: 211 DLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNI 270
+ + R + VS++ + + + F + V + K SVM +YN++NG + +
Sbjct: 169 NQETN----RMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWL 224
Query: 271 LKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG-------- 322
LK+ +R EW G+++SD + + + ++AG DL
Sbjct: 225 LKKVLREEWGFEGFVMSDWYAG--------------DNPVEQLKAGNDLIMPGKAYQVNT 270
Query: 323 --PFLGLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTP 380
A++ G LSE ++ + N L V + F S
Sbjct: 271 ERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYSNKPD--------LE 322
Query: 381 DHQELALEAARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYT- 439
H ++A EA +G+VLL+N+ +LPLS + +A+ G T+ Y
Sbjct: 323 KHAKVAYEAGAEGVVLLRNEE-ALPLS--ENSKIALFGTGQIETIKGGTGSGDTHPRYAI 379
Query: 440 TPLQGIGRYARTI---------------------------HQQGCKDVACADDQLFGAAI 472
+ L+GI K +
Sbjct: 380 SILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIH 439
Query: 473 DASRQADATILVMGLDQSIEAEALDRAG----LLLPGRQQELVSKVSMASKG---PTILV 525
+++ D ++V+ E DR L + +L+ VS I++
Sbjct: 440 KLAKKNDVAVIVISRISG---EGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVL 496
Query: 526 LMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTW------Y 579
L G P++V ++ I+ GQ G +AD+L G NP GKLP T+
Sbjct: 497 LNIGSPVEVVSWRDLV--DGILLVWQAGQETGRIVADVLTGRINPSGKLPTTFPRDYSDV 554
Query: 580 PQEYITNLPMTEMAMRPSQSKRYPGRTYRFY---KGPVVYPFGHGMSYTNFVHTVANAPT 636
P P + Y G YR+Y Y FG+G+SYT F ++
Sbjct: 555 PSWTFPGEPKDNPQKVVYEEDIYVG--YRYYDTFGVEPAYEFGYGLSYTTFEYS------ 606
Query: 637 VVAVPLDGRHGSINATISGKAIKVTHAKCNRLTLGVQVDVKNVGSKDGAHTLLVFSTPPA 696
+ +S + VQ ++N G + G V+ P
Sbjct: 607 -------------DLNVSFDGETLR----------VQYRIENTGGRAGKEVSQVYIKAPK 643
Query: 697 GHWA-PHKQLVAFEKVHV-PAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGEHNIHIGG 753
G P ++L AF K + G + V + I V + L+ + + GE+ + +G
Sbjct: 644 GKIDKPFQELKAFHKTRLLNPGESEEVVLEIPV-RDLASFN-GEEWVVEAGEYEVRVGA 700
|
| >3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 | Back alignment and structure |
|---|
| >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 | Back alignment and structure |
|---|
| >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 | Back alignment and structure |
|---|
| >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 | Back alignment and structure |
|---|
| >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Length = 642 | Back alignment and structure |
|---|
| >3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Length = 535 | Back alignment and structure |
|---|
| >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Length = 340 | Back alignment and structure |
|---|
| >3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Length = 351 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 770 | |||
| 3abz_A | 845 | Beta-glucosidase I; glycoside hydrolase family3 be | 100.0 | |
| 3zyz_A | 713 | Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.1 | 100.0 | |
| 2x41_A | 721 | Beta-glucosidase; hydrolase, TIM barrel fold, fibr | 100.0 | |
| 1x38_A | 602 | Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai | 100.0 | |
| 3rrx_A | 822 | EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( | 100.0 | |
| 3bmx_A | 642 | Uncharacterized lipoprotein YBBD; beta-N-hexosamin | 100.0 | |
| 3sql_A | 535 | Glycosyl hydrolase family 3; structural genomics, | 100.0 | |
| 3tev_A | 351 | Glycosyl hyrolase, family 3; PSI-biology, midwest | 100.0 | |
| 4gvf_A | 349 | Beta-hexosaminidase; TIM-barrel, hydrolase; HET: N | 100.0 | |
| 4g6c_A | 348 | Beta-hexosaminidase 1; ssgcid, niaid, structural g | 100.0 | |
| 2oxn_A | 340 | Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O | 100.0 | |
| 3idu_A | 127 | Uncharacterized protein; all beta-protein, structu | 96.75 | |
| 2l0d_A | 114 | Cell surface protein; structural genomics, northea | 95.82 | |
| 2kut_A | 122 | Uncharacterized protein; structural genomics, PSI- | 95.26 | |
| 3isy_A | 120 | Bsupi, intracellular proteinase inhibitor; intrace | 90.89 | |
| 2x3c_A | 343 | Toxic extracellular endopeptidase; hydrolase; 1.99 | 87.99 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 84.73 | |
| 1w8o_A | 601 | Bacterial sialidase; 3D-structure, glycosidase, hy | 83.5 | |
| 1yew_A | 382 | Particulate methane monooxygenase, B subunit; memb | 81.0 |
| >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-146 Score=1306.68 Aligned_cols=632 Identities=29% Similarity=0.462 Sum_probs=547.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhcC----CCCCCCCCCCchhhhHhhhhccccccCCCcccCCCCCCCccccccccccccCCH
Q 004190 50 PQRVNDLIGRLSLQEKVKLLIS----GAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNA 125 (770)
Q Consensus 50 ~~rv~~ll~~MTleEKi~ql~~----~~~~~~rlgip~~~~~~~~~~g~~~~~~g~~~~~~~~~~t~fP~~~~laat~d~ 125 (770)
+.|+++||++||||||++||.+ ...+++|+|||.+ ++.|++||+. +.++.+ ..++|.||++++||||||+
T Consensus 3 ~~r~~~ll~~mTleEKi~~l~g~~~~~~~~~~rlgiP~l-~~~D~~~G~~----~~~~~~-~~~~t~fP~~~~laat~d~ 76 (845)
T 3abz_A 3 KFDVEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAV-RVSDGPNGIR----GTKFFD-GVPSGCFPNGTGLASTFDR 76 (845)
T ss_dssp CCCHHHHHHHCCHHHHHHHTBCSSSSBCCCBGGGTBCCC-BEEECTTSCC----CSCSTT-CCCBCCCCCHHHHHHTCCH
T ss_pred HHHHHHHHHcCCHHHHHHHhcCCCccccccCcccCCCCE-EEEecCCCee----eeeccC-CCCcCcCcCHHHHHhcCCH
Confidence 4689999999999999999986 3567899999998 6789999975 223311 0248999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcceE-ecccccccCCCCCCccCCCCCCChHHHHHHHHHHHHHhhcCCCCcceeEEee
Q 004190 126 TLWEAIGRVVSDEARAMYNGGTAGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASC 204 (770)
Q Consensus 126 ~l~~~~g~~~g~E~ra~~~~g~~G~~~-laP~~dl~r~p~~gr~~e~fgeDP~l~~~~~~a~v~G~Q~~~g~~~~v~a~~ 204 (770)
+|++++|+++|+|+|++ |+|+ |||++||+|||+|||++|+|||||+|+++|+.|+|+|+|+ +| |+||+
T Consensus 77 ~l~~~~g~~~g~E~ra~------Gi~~~laP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~GlQ~-~g----V~a~~ 145 (845)
T 3abz_A 77 DLLETAGKLMAKESIAK------NAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQG-EG----IAATV 145 (845)
T ss_dssp HHHHHHHHHHHHHHHHT------TCSEEECCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHH-TT----CBCEE
T ss_pred HHHHHHHHHHHHHHHHc------CCCEEecceECCCcCCCCCcccccCCCCHHHHHHHHHHHHHHHhh-CC----eeEEe
Confidence 99999999999999999 8898 9999999999999999999999999999999999999999 78 99999
Q ss_pred cccccccCCCCCCCcccccccccCHHHHHhhccHHHHHHHHcCCccEEEecccCCCCcccccCHHHHHHhhhcccccceE
Q 004190 205 KHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGY 284 (770)
Q Consensus 205 KHFpg~~~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~Gf~G~ 284 (770)
||||||+++ ..|...++.+++++|+|+||+||++||+++.+++||||||++||+|||.|++||++|||+||||+|+
T Consensus 146 KHFpg~g~e----~~r~~~~~~v~~~~L~e~~L~PF~~ai~~ag~~~VM~syn~ing~pa~~s~~ll~~lLR~e~GF~G~ 221 (845)
T 3abz_A 146 KHFVCNDLE----DQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGM 221 (845)
T ss_dssp EEETTCCCC----TTTTTCEEECCHHHHHHTTSHHHHHHHHHHCCSEEEECSSEETTEEGGGCHHHHTCCCCCCTCCCSE
T ss_pred eccccCCcc----cCCccccCCCCHHHHHHhhHHHHHHHHHhcCCCEEEecCCCcCCEeccCCHHHHHHHHhhccCCCeE
Confidence 999999865 3577778889999999999999999997444679999999999999999999999999999999999
Q ss_pred EEcCchhhccccccccccCChHHHHHHHHHcCCCcCCC-c--chh-HHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhC-
Q 004190 285 IVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG-P--FLG-LHTESAVQRGL-LSEIDINNALVNTLTVQMRLG- 358 (770)
Q Consensus 285 VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~-~--~~~-~~l~~av~~G~-i~~~~ld~av~RiL~~k~~~G- 358 (770)
|||||+++. ++++|++||+||+|+ + ++. +.|.+||++|+ |++++||+||+|||++|+++|
T Consensus 222 VvSD~~~~~--------------~~~~Al~AG~D~~m~~~~~~~~~~~l~~av~~G~~i~~~~id~av~RIL~~k~~~g~ 287 (845)
T 3abz_A 222 LMSDWFGTY--------------TTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVD 287 (845)
T ss_dssp EECCTTCCC--------------CSHHHHHHTCCBBCSSSCSSCCHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcccccHH--------------HHHHHHHcCCCcccCCchhhhHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHhCC
Confidence 999998763 247899999999996 2 223 48999999999 999999999999999999999
Q ss_pred ---CCCCCCCCCCCCCCCCCccCChhhHHHHHHHHhhceeeeccCCCCCCcccCCcceEEEEccCCCCceeecccccc-c
Q 004190 359 ---MFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAG-I 434 (770)
Q Consensus 359 ---l~~~~p~~~~~~~~~~~~v~~~~h~~la~~aA~esiVLLKN~~~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~g-~ 434 (770)
+|+ +|. .......+++++|+++++++|++|||||||++++|||++ .+||+||||+|+....++|+++. .
T Consensus 288 l~~~~~-~p~----~~~~~~~~~~~~~~~la~~~a~~sivLLKN~~~~LPL~~--~~~iaviGp~A~~~~~~Gggs~~~~ 360 (845)
T 3abz_A 288 NLEKTG-IVE----NGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKK--EDNIIVIGPNAKAKTSSGGGSASMN 360 (845)
T ss_dssp THHHHC-CCT----TCCCCCTTCSHHHHHHHHHHHHHHCEEEEECTTCCSCCT--TSCEEEESTTTSCCCCSCBSTTCCC
T ss_pred cccccc-CCc----cCccccccCCHHHHHHHHHHHHhCcEEeccCCcccCCCC--CCEEEEEcCCcchhhccCCCccCcc
Confidence 998 442 222223478999999999999999999999999999986 46999999999988766655544 5
Q ss_pred CCCcCCHHHHHHhhh--eeeeeeccCcc------------------------------------c---------------
Q 004190 435 ACGYTTPLQGIGRYA--RTIHQQGCKDV------------------------------------A--------------- 461 (770)
Q Consensus 435 ~~~~~t~~~gl~~~~--~~~~~~g~~~~------------------------------------~--------------- 461 (770)
+.+.+||++||+++. .+.|.+||... .
T Consensus 361 ~~~~vtpl~gi~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (845)
T 3abz_A 361 SYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKVNRS 440 (845)
T ss_dssp BSCCCCHHHHHHHHHTSCCEEECCCCCCSSCCBSGGGEESSTTSCSCTTTBSEEEEEESSCTTTSCTTCCCSEEEEECSS
T ss_pred cCCcCCHHHHHHHhhcCceeeccccccccccccccccccccccccccCCCCceEEEEeccCcccCcccccceeeeecccc
Confidence 778899999999875 36666555200 0
Q ss_pred --------------------------------------------------------------------------------
Q 004190 462 -------------------------------------------------------------------------------- 461 (770)
Q Consensus 462 -------------------------------------------------------------------------------- 461 (770)
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~l~idg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (845)
T 3abz_A 441 NVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLT 520 (845)
T ss_dssp EEECTTCCCTTSBTTBCCCEEEEEEEECCSSSEEEEEEEEEESEEEEEETTEEEEEESSSCCBCSTTTTTSBCCEEEEEE
T ss_pred ceeecccccccccccccceeEEEEEEEecCCCccEEEEEeecCceEEEECCEEEeeccccccccccccccCcccceeEEE
Confidence
Q ss_pred ------------C------------------------Cc-hhhHHHHHHHhhccCEEEEEeCCCccccccccccCCCCCC
Q 004190 462 ------------C------------------------AD-DQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLP 504 (770)
Q Consensus 462 ------------~------------------------~~-~~~~~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp 504 (770)
. .+ ...+++|+++|++||+|||++|.++..|+||.||.+|.||
T Consensus 521 l~~g~~y~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP 600 (845)
T 3abz_A 521 LKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLP 600 (845)
T ss_dssp ECTTCCEEEEEEEECTTTSCCSSCCCCCEEEEEEEECCCHHHHHHHHHHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCC
T ss_pred ecCCceeeEEEEeccCCcccccccccccceeecccccccchhhHHHHHHHHhcCCEEEEEEecCCccccccCCcccccCC
Confidence 0 00 1347789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEecCCeeeeccccCCCCcceEEeccCCCchhHHHHHHHHcCCCCCCcccccccCCcccc
Q 004190 505 GRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYPQEYI 584 (770)
Q Consensus 505 ~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~e~g~AladVL~G~~nPsGkLPvT~~p~~~~ 584 (770)
+.|++||++|+++ ++|||||+++|+|++|+|++ +++|||++||||||+|+||||||||++|||||||+|| |+++
T Consensus 601 ~~Q~~LI~aV~a~-~~~tVVVl~sG~pv~m~w~~---~v~AIL~aw~pGqegG~AiAdVLfG~vNPSGkLP~T~-p~~~- 674 (845)
T 3abz_A 601 KRTNELVRAVLKA-NPNTVIVNQSGTPVEFPWLE---DANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSW-PFKL- 674 (845)
T ss_dssp TTHHHHHHHHHHH-CSCEEEEEECSSCCCCTTGG---GCSEEEECCCCCTTHHHHHHHHHTTSSCCCCCCSSCB-CSSG-
T ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCCcccCcchh---ccCeEEEcCCCcHHHHHHHHHHhcCCcCCCCCCceee-eCch-
Confidence 9999999999976 56899999999999999984 7999999999999999999999999999999999999 5664
Q ss_pred CCCCccccC-CCC----CCCCCCCCCcccccC---CCcccccCcCCCCCCceec--ccccCccccccCCCCCCccccccc
Q 004190 585 TNLPMTEMA-MRP----SQSKRYPGRTYRFYK---GPVVYPFGHGMSYTNFVHT--VANAPTVVAVPLDGRHGSINATIS 654 (770)
Q Consensus 585 ~~~p~~~~~-~~~----~~~~~~~g~~Yr~~~---~~~lypFG~GLSYTtF~ys--~~~~~~~~~~~~~~~~~~~~~~~~ 654 (770)
+|+|.++.. ... +.+..|. +||||+ .+|+||||||||||||+|+ ++++.
T Consensus 675 ~d~P~~~~~~~~~g~~~y~eg~~v--gYR~y~~~~~~plfPFG~GLSYTtF~ys~~~l~v~------------------- 733 (845)
T 3abz_A 675 QDNPAFLNFKTEFGRVIYGEDIFV--GYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVT------------------- 733 (845)
T ss_dssp GGSTTTTSCSCBTTEEECTTTTCC--THHHHHHHTCCCSBCTTCCBCSSCEEEEEEEEEEC-------------------
T ss_pred hhCCccccCCCCCCceeccCCccC--CCcchhcCCCceeecccCCCcceeEEEeccccccc-------------------
Confidence 568865321 100 1122333 599997 5799999999999999999 88721
Q ss_pred ccccccccccCCceeEEEEEEEEeCC-CCCcceEEEEEEeCCCC-CCCcccccccccceecCCCCeEEEEEEec-cCCCe
Q 004190 655 GKAIKVTHAKCNRLTLGVQVDVKNVG-SKDGAHTLLVFSTPPAG-HWAPHKQLVAFEKVHVPAGAQQRVGINIH-VCKYL 731 (770)
Q Consensus 655 ~~~~~~~~~~~~~~~~~v~v~VtNtG-~~~G~eVvQlYv~~~~~-~~~P~k~L~gF~kv~L~pGes~~V~~~l~-~~~~l 731 (770)
++.++|+|+||||| +++|+||||||+++|.+ +.+|+|+||||+||+|+||||++|+|+|+ . ++|
T Consensus 734 ------------~~~~~v~v~V~NtG~~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~-~~l 800 (845)
T 3abz_A 734 ------------DDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELK-DAI 800 (845)
T ss_dssp ------------SSEEEEEEEEEECCSSCCEEEEEEEEEEESSCSSCCCSCEEEEEEEEEECTTCEEEEEEEEEHH-HHH
T ss_pred ------------CCeEEEEEEEEECCcCCCcceeeeeeEeCCCCCcchhhheeccceeEEECCCCEEEEEEEeCCh-HHe
Confidence 14699999999999 99999999999999987 57899999999999999999999999999 8 799
Q ss_pred eEEeCC-CcEEeeCeEEEEEEeCCCCeEEEEEE
Q 004190 732 SVVDRS-GTRRIPLGEHNIHIGGTKHSVSLHAA 763 (770)
Q Consensus 732 s~~d~~-~~~~~~~G~y~~~vG~ss~~~~~~~~ 763 (770)
++||+. ++|++|+|+|+|+||.||++++++..
T Consensus 801 ~~~d~~~~~~~~e~G~y~v~vG~ss~di~l~~~ 833 (845)
T 3abz_A 801 SYFNEELGKWHVEAGEYLVSVGTSSDDILSVKE 833 (845)
T ss_dssp CEEETTTTEEEECSEEEEEEEESSTTCEEEEEE
T ss_pred eEEecCCCeEEEcCCEEEEEEECCCCCceeEEE
Confidence 999996 78999999999999999999876543
|
| >3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A* | Back alignment and structure |
|---|
| >2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* | Back alignment and structure |
|---|
| >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* | Back alignment and structure |
|---|
| >3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A | Back alignment and structure |
|---|
| >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* | Back alignment and structure |
|---|
| >3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* | Back alignment and structure |
|---|
| >3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A* | Back alignment and structure |
|---|
| >4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A* | Back alignment and structure |
|---|
| >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A | Back alignment and structure |
|---|
| >3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A | Back alignment and structure |
|---|
| >2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} | Back alignment and structure |
|---|
| >2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A | Back alignment and structure |
|---|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* | Back alignment and structure |
|---|
| >1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 770 | ||||
| d1x38a1 | 388 | c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-te | 2e-47 | |
| d1x38a2 | 214 | c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, | 1e-26 | |
| d1tr9a_ | 330 | c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio chol | 3e-14 |
| >d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: NagZ-like domain: Beta-D-glucan exohydrolase, N-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Score = 171 bits (432), Expect = 2e-47
Identities = 93/397 (23%), Positives = 161/397 (40%), Gaps = 68/397 (17%)
Query: 46 SLPIPQRVNDLIGRLSLQEKVKLL---------------------ISGAAAVPRLGIKGY 84
+ P+ RV DL+GR++L EK+ + +SG +VPR G
Sbjct: 9 TKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAK 68
Query: 85 EWWSEALHGVSNVGPGTK------FGGDFP-------GATSFPQVITTASSFNATLWEAI 131
EW + + G T+ +G D GAT FP + ++ + L + I
Sbjct: 69 EWQ-DMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLVKRI 127
Query: 132 GRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKY--------- 182
G + E RA ++P + + RDPRWGR E+ ED +
Sbjct: 128 GEATALEVRATGI-----QYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQG 182
Query: 183 --AASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPF 240
+ G+ G KVAA KHF + VD + N + ++ +P
Sbjct: 183 DVPKDFTSGMPFVAGKN-KVAACAKHFVG----DGGTVDGINENNTIINREGLMNIHMPA 237
Query: 241 RMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQH 300
M+ V++VM SY+ NGV A+ +++ ++ + G+++SD + +
Sbjct: 238 YKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRIT--TP 295
Query: 301 FTSTPEEAAADAIRAGLDL----DCGPFLGLHTESAVQRGLLSEIDINNALVNTLTVQMR 356
S + +I AGLD+ + V G++ I++A+ L V+
Sbjct: 296 AGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFT 355
Query: 357 LGMFDGEPSSQPYGHLG-PKDVCTPDHQELALEAARQ 392
+G+F+ PY + + +H++LA EAAR+
Sbjct: 356 MGLFE-----NPYADPAMAEQLGKQEHRDLAREAARK 387
|
| >d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 214 | Back information, alignment and structure |
|---|
| >d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Length = 330 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 770 | |||
| d1x38a1 | 388 | Beta-D-glucan exohydrolase, N-terminal domain {Bar | 100.0 | |
| d1tr9a_ | 330 | Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: | 100.0 | |
| d1x38a2 | 214 | Beta-D-glucan exohydrolase, C-terminal domain {Bar | 100.0 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.18 | |
| d2q3za2 | 114 | Transglutaminase, two C-terminal domains {Human (H | 88.14 | |
| d2vzsa2 | 122 | Exochitosanase CsxA, domains 2, 4 and 5 {Amycolato | 85.17 | |
| d1ex0a2 | 112 | Transglutaminase, two C-terminal domains {Human (H | 83.91 | |
| d1vjja2 | 115 | Transglutaminase, two C-terminal domains {Human (H | 80.06 |
| >d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: NagZ-like domain: Beta-D-glucan exohydrolase, N-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00 E-value=6.3e-71 Score=611.04 Aligned_cols=326 Identities=28% Similarity=0.474 Sum_probs=273.4
Q ss_pred CC-CCCCCCChHHHHHHHHhcCCHHHHHHHhcCC---------------------CCCCCCCCCchhhh-----------
Q 004190 40 LP-FCQVSLPIPQRVNDLIGRLSLQEKVKLLISG---------------------AAAVPRLGIKGYEW----------- 86 (770)
Q Consensus 40 ~~-~~d~~~~~~~rv~~ll~~MTleEKi~ql~~~---------------------~~~~~rlgip~~~~----------- 86 (770)
+| |+||++|+++||++||++|||||||+||++. ...+++++.|...|
T Consensus 2 ~~~y~d~~~~~e~Rv~dLl~~MTleEKigQl~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~ 81 (388)
T d1x38a1 2 YVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEWQDMVDGFQKAC 81 (388)
T ss_dssp CCGGGCTTSCHHHHHHHHHTTCCHHHHHHHTEEEEGGGCCHHHHHHTTCCEEEECTTCCSSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHCCCHHHHHhhhcccccccCCHHHHHhccccceeecCCcccCCCCCHHHHHHHHHHHHHHH
Confidence 46 9999999999999999999999999999742 12345555554432
Q ss_pred -----------HhhhhccccccCCCcccCCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHhhcCCCCcceE-ec
Q 004190 87 -----------WSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTY-WS 154 (770)
Q Consensus 87 -----------~~~~~~g~~~~~~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~g~~G~~~-la 154 (770)
..|..+|+. ...+.|.||+++++|||||++|++++|+++|+|+|++ |+|+ |+
T Consensus 82 ~~~~~giPlli~~D~e~G~~----------~~~~~t~~p~~~~~aat~d~~l~~~~g~~~g~E~ra~------Gin~~~a 145 (388)
T d1x38a1 82 MSTRLGIPMIYGIDAVHGQN----------NVYGATIFPHNVGLGATRDPYLVKRIGEATALEVRAT------GIQYAFA 145 (388)
T ss_dssp HTSSSCCCCEEEECCSSSST----------TSTTCCCCCCHHHHHHHTCHHHHHHHHHHHHHHHHHT------TCCEECC
T ss_pred HhccCCCCceeecccccCcc----------cccccccchhhhhccccCCHHHHHHHHHHhhHHHHhc------CCccccC
Confidence 223333321 1125789999999999999999999999999999999 8998 99
Q ss_pred ccccccCCCCCCccCCCCCCChHHHHHHHHHHHHHhhcCCC-----------CcceeEEeecccccccCCCCCCCccccc
Q 004190 155 PNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDG-----------DRLKVAASCKHFTAYDLDNWNGVDRFHF 223 (770)
Q Consensus 155 P~~dl~r~p~~gr~~e~fgeDP~l~~~~~~a~v~G~Q~~~g-----------~~~~v~a~~KHFpg~~~~~~~~~~r~~~ 223 (770)
|++||.|||+|||++|+|||||+|+++|+. +|.++|+..+ +..+|+||+|||||||.+.. +++..
T Consensus 146 Pv~Dv~~~p~~gr~~et~geDp~l~~~~~~-~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~~---~~~~~ 221 (388)
T d1x38a1 146 PCIAVCRDPRWGRCYESYSEDRRIVQSMTE-LIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVD---GINEN 221 (388)
T ss_dssp CBCCCCSCTTSTTGGGSSCSSHHHHHHGGG-HHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCGG---GCTTC
T ss_pred CcccccccccccccccCccCCHHHHHHHHh-hhhhhhchhhhhhcccccccccccCcceeeeeeecCCcccc---Ccccc
Confidence 999999999999999999999999999964 7887776311 12369999999999985532 34445
Q ss_pred ccccCHHHHHhhccHHHHHHHHcCCccEEEecccCCCCcccccCHHHHHHhhhcccccceEEEcCchhhccccccccccC
Q 004190 224 NAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTS 303 (770)
Q Consensus 224 ~~~~~~~~l~e~~l~PF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~ 303 (770)
++.+++++|++.||+||+.+|++|. .+|||+||.+||+|+|.|+++|+++||+||||+|+|||||++|+++... +..
T Consensus 222 ~~~i~~~~l~~~~l~pf~~~i~~g~-~~vM~s~~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~~~--~~~ 298 (388)
T d1x38a1 222 NTIINREGLMNIHMPAYKNAMDKGV-STVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTP--AGS 298 (388)
T ss_dssp EECCCHHHHHHHTSHHHHHHHHTTC-CEEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGSSS--TTT
T ss_pred ccchhHHHHHHHhhhhhHHHHhhcc-ccccccccccCCccccCCHHHHHHHHHhccCCCceeecchhhccccccc--cCC
Confidence 5678999999999999999999985 5999999999999999999999999999999999999999999988653 334
Q ss_pred ChHHHHHHHHHcCCCcCCCc----chhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCC-CCccC
Q 004190 304 TPEEAAADAIRAGLDLDCGP----FLGLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLG-PKDVC 378 (770)
Q Consensus 304 ~~~ea~~~al~AG~D~~~~~----~~~~~l~~av~~G~i~~~~ld~av~RiL~~k~~~Gl~~~~p~~~~~~~~~-~~~v~ 378 (770)
...++++.+++||+||+|.+ .+.+.|.+||++|+|+++|||+||+|||++|+++|||| +| |.+.. ...++
T Consensus 299 ~~~~~~~~a~~ag~d~~~~~~~~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~k~~lGlfd-~p----~~~~~~~~~i~ 373 (388)
T d1x38a1 299 DYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFE-NP----YADPAMAEQLG 373 (388)
T ss_dssp THHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTT-CC----SCCGGGGGGTT
T ss_pred cHHHHHHHHHhcCCCeecCCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCC-CC----CCChhhhhhcC
Confidence 56788999999999999863 35578999999999999999999999999999999999 55 33221 24578
Q ss_pred ChhhHHHHHHHHhhc
Q 004190 379 TPDHQELALEAARQG 393 (770)
Q Consensus 379 ~~~h~~la~~aA~es 393 (770)
+++|+++|+++|+||
T Consensus 374 ~~~h~~~a~~aA~~S 388 (388)
T d1x38a1 374 KQEHRDLAREAARKS 388 (388)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999997
|
| >d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
| >d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
| >d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} | Back information, alignment and structure |
|---|