Citrus Sinensis ID: 004193
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 769 | 2.2.26 [Sep-21-2011] | |||||||
| Q39548 | 789 | Ent-kaur-16-ene synthase, | N/A | no | 0.966 | 0.941 | 0.566 | 0.0 | |
| Q9SAK2 | 785 | Ent-kaur-16-ene synthase, | yes | no | 0.986 | 0.966 | 0.565 | 0.0 | |
| Q0JA82 | 756 | Ent-kaur-16-ene synthase, | yes | no | 0.938 | 0.955 | 0.503 | 0.0 | |
| Q00G37 | 830 | Ent-cassa-12,15-diene syn | N/A | no | 0.932 | 0.863 | 0.456 | 0.0 | |
| Q0E088 | 829 | Ent-cassa-12,15-diene syn | no | no | 0.933 | 0.866 | 0.454 | 0.0 | |
| Q66QH3 | 840 | Syn-pimara-7,15-diene syn | N/A | no | 0.928 | 0.85 | 0.449 | 0.0 | |
| Q0JA83 | 739 | Ent-kaurene synthase-like | no | no | 0.886 | 0.922 | 0.463 | 0.0 | |
| Q0JEZ8 | 842 | Syn-pimara-7,15-diene syn | no | no | 0.928 | 0.847 | 0.449 | 0.0 | |
| Q0JA81 | 937 | Ent-kaurene synthase-like | no | no | 0.889 | 0.729 | 0.462 | 0.0 | |
| Q6Z5J6 | 821 | Ent-pimara-8(14),15-diene | no | no | 0.955 | 0.895 | 0.431 | 0.0 |
| >sp|Q39548|KSB_CUCMA Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbita maxima PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/761 (56%), Positives = 548/761 (72%), Gaps = 18/761 (2%)
Query: 23 GSKFGTEAKTNNLCFQRTKERTEKMFDKIELSVSPYDTAWVAMVPSLELPQAPCFPQCIN 82
G T KT L F+ TKER +K+FDK+ELSVS YDTAWVAMVPS P FP+CIN
Sbjct: 27 GVDVDTTTKTGALHFEETKERIKKLFDKVELSVSAYDTAWVAMVPSPNSLNQPLFPECIN 86
Query: 83 WLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIGEEQMNKGIQFIMSNFASV 142
W+LD+Q DGSWGL + L+K +L TLACVL LKRW IG + M+K + FI SN AS
Sbjct: 87 WVLDSQHADGSWGLLHNDQLLMKANLLSTLACVLTLKRWNIGHDHMSKALDFIKSNIASA 146
Query: 143 TDEKQQTPIGFDIIFPGMIECAQDLNLNLPLRSSDINAMLERRHLELN--RNYTAGRKEY 200
TDE Q++P+GFDIIFPGMIE A+DLNLNLPL ++++A++ ++ LEL R+ + G K Y
Sbjct: 147 TDENQRSPVGFDIIFPGMIEYAKDLNLNLPLAPTNVDALVRKKELELRSCRSNSEGGKAY 206
Query: 201 LAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAALTHFHNAGCLHYLSSLLEKFGNA 260
LAYVSEGIGKLQDW+MVM+YQRKNGSLFNSPSTTAAA H ++ GC YL SLL+KF +
Sbjct: 207 LAYVSEGIGKLQDWDMVMQYQRKNGSLFNSPSTTAAAFMHRNDDGCFDYLRSLLQKFDGS 266
Query: 261 VPTVHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMA 320
VPT++PLDIY L MV+SL+ G+ RHF+ EI+ VLDETYR W+QGEE IFLD +TCAMA
Sbjct: 267 VPTIYPLDIYARLHMVDSLQKFGIARHFKEEIRSVLDETYRCWMQGEENIFLDASTCAMA 326
Query: 321 FRLLRLNGYDVSSDPLTQFAEDNQFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQ 380
FR+LR+ GYDVSSD LTQF+ED F N L GYLKD A LELY+ASQI +PDESVLE
Sbjct: 327 FRMLRVEGYDVSSDQLTQFSED-IFPNCLGGYLKDFGASLELYKASQIITHPDESVLENI 385
Query: 381 QFWTSHFLKQELSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDNMR 440
WTS FLK LSS S+ S+R V + +AL+FPY+ LERL +R + Y+ D +R
Sbjct: 386 NSWTSRFLKHGLSSDSVWSDRTDSVVKQEAVNALEFPYNATLERLISKRAMESYSGDIVR 445
Query: 441 ILKTSYCSLNIGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLDKLKFARQKQTYC 500
I K+ Y LN G++ F +LAV+DFN Q +H++EL+ L+RWVVE +LD+LKF R YC
Sbjct: 446 ISKSPYACLNFGHQDFLELAVEDFNTLQRIHLKELEELQRWVVENKLDELKFFRLHLGYC 505
Query: 501 YFSVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSEEELLNLIDLLERWDVEEAKN 560
YF+ AATL PEL DAR++WA+N VLTT+VDDFYD GGSEEEL NLI+L+E+WD +
Sbjct: 506 YFAAAATLTDPELHDARIAWAQNGVLTTVVDDFYDGGGSEEELDNLIELVEKWDPDGEVG 565
Query: 561 CCSEQVEIIFSALRSTICEFGDKTLTWQGRNATSHIVETCL-------------RNKSVP 607
CS+ VEI+F AL ST+CE G + L WQGR+ ++++ L NK VP
Sbjct: 566 YCSKDVEIVFLALHSTVCEIGRRALVWQGRSVMRNVIDGWLALLKVMRKEAEWSTNKVVP 625
Query: 608 TLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRDPEFHNLYKLVSTCGRLLNDIQGF 667
++ EYME A+ SFALGPII P ++FVGPKLSEE++ E+ LYKL+ST GRL NDI+ +
Sbjct: 626 SMGEYMEQAHVSFALGPIILPMLFFVGPKLSEEMIGSCEYQKLYKLMSTAGRLKNDIRSY 685
Query: 668 KRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKEEGSIVPRACK 727
RE KEGKLN +SL M GN+T+ EAIE IK + RELL LVL+E +I PRACK
Sbjct: 686 DRECKEGKLNILSLWMIDGGGNVTKEEAIEAIKGDFERAIRELLGLVLQENTTI-PRACK 744
Query: 728 DLIWKMSKVLHLFYMNTDGFSSNVEMVKAVSEVVYEPISVN 768
DL WK+ +++LFYM DG++SN ++ V + +P+ ++
Sbjct: 745 DLFWKLMSIVNLFYMEDDGYTSN-RLMNTVKAMFEQPMDLD 784
|
Catalyzes the conversion of ent-copalyl diphosphate to the gibberellin precursor ent-kaur-16-ene. Cucurbita maxima (taxid: 3661) EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 9 |
| >sp|Q9SAK2|KSB_ARATH Ent-kaur-16-ene synthase, chloroplastic OS=Arabidopsis thaliana GN=GA2 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q0JA82|KS1_ORYSJ Ent-kaur-16-ene synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=KS1 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q00G37|KSL7_ORYSI Ent-cassa-12,15-diene synthase OS=Oryza sativa subsp. indica GN=KSL7 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q0E088|KSL7_ORYSJ Ent-cassa-12,15-diene synthase OS=Oryza sativa subsp. japonica GN=KSL7 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q66QH3|KSL4_ORYSI Syn-pimara-7,15-diene synthase OS=Oryza sativa subsp. indica GN=KSL4 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q0JA83|KSL3_ORYSJ Ent-kaurene synthase-like 3 OS=Oryza sativa subsp. japonica GN=KSL3 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q0JEZ8|KSL4_ORYSJ Syn-pimara-7,15-diene synthase OS=Oryza sativa subsp. japonica GN=KSL4 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q0JA81|KSL2_ORYSJ Ent-kaurene synthase-like 2 OS=Oryza sativa subsp. japonica GN=KSL2 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q6Z5J6|KSL5_ORYSJ Ent-pimara-8(14),15-diene synthase OS=Oryza sativa subsp. japonica GN=KSL5 PE=1 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 769 | ||||||
| 333394167 | 784 | ent-kaurene synthase [Castanea mollissim | 0.996 | 0.977 | 0.646 | 0.0 | |
| 297736112 | 826 | unnamed protein product [Vitis vinifera] | 0.972 | 0.905 | 0.646 | 0.0 | |
| 359494629 | 793 | PREDICTED: ent-kaur-16-ene synthase, chl | 0.960 | 0.931 | 0.638 | 0.0 | |
| 255586055 | 808 | Ent-kaurene synthase B, chloroplast prec | 0.932 | 0.887 | 0.648 | 0.0 | |
| 224098838 | 743 | ent-kaurene synthase [Populus trichocarp | 0.938 | 0.971 | 0.649 | 0.0 | |
| 345114178 | 737 | ent-kaurene synthase [Pyrus communis] | 0.931 | 0.971 | 0.647 | 0.0 | |
| 381280158 | 737 | ent-kaurene synthase [Malus x domestica] | 0.931 | 0.971 | 0.640 | 0.0 | |
| 356528647 | 802 | PREDICTED: ent-kaur-16-ene synthase, chl | 0.951 | 0.912 | 0.589 | 0.0 | |
| 11862933 | 785 | ent-kaurene synthase [Cucumis sativus] | 0.994 | 0.974 | 0.569 | 0.0 | |
| 449492988 | 785 | PREDICTED: LOW QUALITY PROTEIN: ent-kaur | 0.994 | 0.974 | 0.569 | 0.0 |
| >gi|333394167|gb|AEF32083.1| ent-kaurene synthase [Castanea mollissima] | Back alignment and taxonomy information |
|---|
Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/784 (64%), Positives = 618/784 (78%), Gaps = 18/784 (2%)
Query: 1 MALSRSHNLISSSSLISGTANHGSKFGTEAKTNNLCFQRTKERTEKMFDKIELSVSPYDT 60
M+LS S S S + GS +AK L + TK+R + MFDK+ELSVS YDT
Sbjct: 1 MSLSHSSRPWCSLYSTSVSLVPGSIEARKAKKPALFIEGTKQRIKTMFDKVELSVSSYDT 60
Query: 61 AWVAMVPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKR 120
AWVAM+P PQAP FPQC+NWLLDNQ++DGSWGL NR S+LVKDA+L TLAC+L LK+
Sbjct: 61 AWVAMIPCQNTPQAPFFPQCVNWLLDNQLHDGSWGLPNRDSFLVKDALLSTLACILPLKQ 120
Query: 121 WGIGEEQMNKGIQFIMSNFASVTDEKQQTPIGFDIIFPGMIECAQDLNLNLPLRSSDINA 180
WG+GEEQMNKG+ FI SN A+ TDEKQ +PIGFDIIFP +IE A++L+L++PL +++++A
Sbjct: 121 WGVGEEQMNKGLFFIESNIAAATDEKQVSPIGFDIIFPALIEYAKNLDLSIPLGATNLDA 180
Query: 181 MLERRHLELNRNYTA---GRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAA 237
+ +R LEL R Y + G+ YLAY SEG+GK DWE +MKYQRKNGSLFNSPSTTAAA
Sbjct: 181 LFHKRELELKRGYGSNLEGKGSYLAYFSEGLGKSADWETIMKYQRKNGSLFNSPSTTAAA 240
Query: 238 LTHFHNAGCLHYLSSLLEKFGNAVPTVHPLDIYINLTMVESLESLGVDRHFRTEIKRVLD 297
T+ N+GCL YL SLL++FGNAVPTV+PLDIY L MV+SLE LG+DRHFR EIK VLD
Sbjct: 241 FTYLKNSGCLSYLHSLLDRFGNAVPTVYPLDIYTRLCMVDSLERLGIDRHFRKEIKSVLD 300
Query: 298 ETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVSSDPLTQFAEDNQFCNSLKGYLKDIS 357
ETYR WLQGEEEIFLD TCAMAFR+LR+NG+D+SSDP TQ +ED+ F +SL GY+KDI
Sbjct: 301 ETYRCWLQGEEEIFLDTATCAMAFRILRVNGFDISSDPFTQLSEDH-FSSSLGGYMKDIG 359
Query: 358 AVLELYRASQITIYPDESVLEKQQFWTSHFLKQELSSGSIHSNRFSQNVSSQVEDALKFP 417
+VLEL+RASQI I+PDE VLEKQ FWTS FL QELS+GSIH++ ++ VS +V+DALKFP
Sbjct: 360 SVLELFRASQIIIHPDEFVLEKQNFWTSQFLIQELSNGSIHADGLNKYVSQEVDDALKFP 419
Query: 418 YHVNLERLAHRRNINLYNVDNMRILKTSYCSLNIGNEYFQKLAVDDFNICQSMHIEELKH 477
YH +LERL++RR I YN +N R+LKT+Y S NIGNE F LAV+DFNICQS+ EELK
Sbjct: 420 YHASLERLSNRRAIENYNKNNTRVLKTAYSSSNIGNEDFLNLAVEDFNICQSIQREELKD 479
Query: 478 LERWVVEKRLDKLKFARQKQTYCYFSVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLG 537
L RW+ E RLDKLKFARQK YCYFS AATLFSPELSDAR+SWAKN VLTT+VDDF+D+G
Sbjct: 480 LARWITENRLDKLKFARQKLAYCYFSAAATLFSPELSDARISWAKNGVLTTVVDDFFDVG 539
Query: 538 GSEEELLNLIDLLERWDVEEAKNCCSEQVEIIFSALRSTICEFGDKTLTWQGRNATSHIV 597
GS EEL+NLI L+E+WDV+ + +CCSE VEIIFSAL STIC+F DK LT QGRN SHI+
Sbjct: 540 GSVEELVNLIQLVEKWDVDVSTDCCSENVEIIFSALHSTICDFADKGLTLQGRNVISHII 599
Query: 598 ET-------------CLRNKSVPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRD 644
+ LR+KSVP++DEYM N Y SFALGPI+ PA+Y VGPKLSEE+V
Sbjct: 600 DIWLNLLKSMLKEAEWLRDKSVPSMDEYMTNGYVSFALGPIVLPALYCVGPKLSEEIVGT 659
Query: 645 PEFHNLYKLVSTCGRLLNDIQGFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIK 704
PE H+LY+++STCGRLLNDIQ FKRES+EGKLN+VSL M + G+ T+ E I+++K I
Sbjct: 660 PELHHLYEIMSTCGRLLNDIQTFKRESEEGKLNAVSLCMIHGGGDCTKEETIKELKSFIA 719
Query: 705 STRRELLRLVLKEEGSIVPRACKDLIWKMSKVLHLFYMNTDGFSSNVEMVKAVSEVVYEP 764
RRELL+LVL+E+GS+VPRACKDL WKM KVLHLFYM DGF+S+ EM +V+ V+ EP
Sbjct: 720 GKRRELLKLVLQEKGSVVPRACKDLFWKMIKVLHLFYMKDDGFTSH-EMFNSVNAVLEEP 778
Query: 765 ISVN 768
I +N
Sbjct: 779 IVLN 782
|
Source: Castanea mollissima Species: Castanea mollissima Genus: Castanea Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736112|emb|CBI24150.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359494629|ref|XP_002265005.2| PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255586055|ref|XP_002533694.1| Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis] gi|223526405|gb|EEF28689.1| Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224098838|ref|XP_002311286.1| ent-kaurene synthase [Populus trichocarpa] gi|222851106|gb|EEE88653.1| ent-kaurene synthase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|345114178|gb|AEN74904.1| ent-kaurene synthase [Pyrus communis] | Back alignment and taxonomy information |
|---|
| >gi|381280158|gb|AFG18184.1| ent-kaurene synthase [Malus x domestica] | Back alignment and taxonomy information |
|---|
| >gi|356528647|ref|XP_003532911.1| PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|11862933|dbj|BAB19275.1| ent-kaurene synthase [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449492988|ref|XP_004159161.1| PREDICTED: LOW QUALITY PROTEIN: ent-kaur-16-ene synthase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 769 | ||||||
| TAIR|locus:2206390 | 785 | GA2 "GA REQUIRING 2" [Arabidop | 0.955 | 0.936 | 0.545 | 1.9e-211 | |
| UNIPROTKB|G9MAN7 | 867 | mds "Miltiradiene synthase" [S | 0.647 | 0.574 | 0.308 | 4.1e-77 | |
| UNIPROTKB|Q6ET36 | 867 | CPS1 "Ent-copalyl diphosphate | 0.635 | 0.564 | 0.312 | 1.7e-68 | |
| TAIR|locus:2140260 | 802 | GA1 "GA REQUIRING 1" [Arabidop | 0.620 | 0.594 | 0.313 | 4.4e-68 | |
| UNIPROTKB|E2IHE0 | 808 | CLS "Copal-8-ol diphosphate hy | 0.637 | 0.606 | 0.305 | 9.2e-68 | |
| TAIR|locus:2008485 | 877 | TPS04 "terpene synthase 04" [A | 0.815 | 0.714 | 0.282 | 3.5e-64 | |
| UNIPROTKB|Q6Z5I0 | 800 | CPS2 "Ent-copalyl diphosphate | 0.664 | 0.638 | 0.297 | 1.9e-58 | |
| UNIPROTKB|Q84KL6 | 629 | PT1 "(-)-alpha-pinene synthase | 0.635 | 0.777 | 0.285 | 1.1e-48 | |
| UNIPROTKB|Q84KL4 | 627 | PT10 "(-)-alpha-terpineol synt | 0.628 | 0.770 | 0.282 | 1.5e-45 | |
| UNIPROTKB|Q84KL3 | 628 | PT30 "(+)-alpha-pinene synthas | 0.622 | 0.762 | 0.287 | 5.8e-45 |
| TAIR|locus:2206390 GA2 "GA REQUIRING 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2044 (724.6 bits), Expect = 1.9e-211, P = 1.9e-211
Identities = 413/757 (54%), Positives = 523/757 (69%)
Query: 29 EAKTNNLCFQRTKERTEKMFDKIELSVSPYDTAWVAMVPSLELPQAPCFPQCINWLLDNQ 88
+ + NN+ F++TKE+ KM +K+ELSVS YDT+WVAMVPS AP FPQC+ WLLDNQ
Sbjct: 27 QTRANNVSFEQTKEKIRKMLEKVELSVSAYDTSWVAMVPSPSSQNAPLFPQCVKWLLDNQ 86
Query: 89 VNDGSWGLHNRPSW-LVKDXXXXXXXXXXXXKRWGIGEEQMNKGIQFIMSNFASVTDEKQ 147
DGSWGL N L KD K+WGIGE Q+NKG+QFI N A VTDE
Sbjct: 87 HEDGSWGLDNHDHQSLKKDVLSSTLASILALKKWGIGERQINKGLQFIELNSALVTDETI 146
Query: 148 QTPIGFDIIFPGMIECAQDLNLNLPLRSSDINAMLERRHLEL---NRNYTAGRKEYLAYV 204
Q P GFDIIFPGMI+ A+DLNL +PL S ++ M+ +R L+L + ++ GR+ YLAYV
Sbjct: 147 QKPTGFDIIFPGMIKYARDLNLTIPLGSEVVDDMIRKRDLDLKCDSEKFSKGREAYLAYV 206
Query: 205 SEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAALTHFHNAGCLHYLSSLLEKFGNAVPTV 264
EG L+DW++++KYQRKNGSLF+SP+TTAAA T F N GCL YL SLL+KF AVP+V
Sbjct: 207 LEGTRNLKDWDLIVKYQRKNGSLFDSPATTAAAFTQFGNDGCLRYLCSLLQKFEAAVPSV 266
Query: 265 HPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLL 324
+P D Y L+++ +LESLG+DR F+TEIK +LDETYR+WL+G+EEI LDL TCA+AFRLL
Sbjct: 267 YPFDQYARLSIIVTLESLGIDRDFKTEIKSILDETYRYWLRGDEEICLDLATCALAFRLL 326
Query: 325 RLNGYDVSSDPLTQFAEDNQFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWT 384
+GYDVS DPL FAE++ F ++L+GY+K+ +VLEL++A+Q YP ES L+KQ WT
Sbjct: 327 LAHGYDVSYDPLKPFAEESGFSDTLEGYVKNTFSVLELFKAAQS--YPHESALKKQCCWT 384
Query: 385 SHFLKQELSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNI-NLYNVDNMRILK 443
+L+ ELSS S R + + +VEDAL FP + +LER HRR I N V+N R+ K
Sbjct: 385 KQYLEMELSSWVKTSVR-DKYLKKEVEDALAFPSYASLERSDHRRKILNGSAVENTRVTK 443
Query: 444 TSYCSLNIGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLDKLKFARQKQTYCYFS 503
TSY NI KLAVDDFN CQS+H EE++ L+RW+VE RL +LKFARQK YCYFS
Sbjct: 444 TSYRLHNICTSDILKLAVDDFNFCQSIHREEMERLDRWIVENRLQELKFARQKLAYCYFS 503
Query: 504 VAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCS 563
AATLFSPELSDAR+SWAK VLTT+VDDF+D+GGS +WD+ S
Sbjct: 504 GAATLFSPELSDARISWAKGGVLTTVVDDFFDVGGSKEELENLIHLVEKWDLNGVPEYSS 563
Query: 564 EQVEIIFSALRSTICEFGDKTLTWQGRNATSHIVE-------TCLR------NKSVPTLD 610
E VEIIFS LR TI E GDK T+QGRN T HIV+ + LR +KS P+L+
Sbjct: 564 EHVEIIFSVLRDTILETGDKAFTYQGRNVTHHIVKIWLDLLKSMLREAEWSSDKSTPSLE 623
Query: 611 EYMENAYASFALGPIIFPAVYFVGPKLSEEVVRDPEFHNLYKLVSTCGRLLNDIQGFKRE 670
+YMENAY SFALGPI+ PA Y +GP L E+ V +++ LYKLVST GRLLNDIQGFKRE
Sbjct: 624 DYMENAYISFALGPIVLPATYLIGPPLPEKTVDSHQYNQLYKLVSTMGRLLNDIQGFKRE 683
Query: 671 SKEGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIKSTXXXXXXXXXXXXGSIVPRACKDLI 730
S EGKLN+VSL M + N ++ IE +K + + GS+VPR CK+
Sbjct: 684 SAEGKLNAVSLHMKHERDNRSKEVIIESMKGLAERKREELHKLVLEEKGSVVPRECKEAF 743
Query: 731 WKMSKVLHLFYMNTDGFSSNVEMVKAVSEVVYEPISV 767
KMSKVL+LFY DGF+SN +++ V V+YEP+S+
Sbjct: 744 LKMSKVLNLFYRKDDGFTSN-DLMSLVKSVIYEPVSL 779
|
|
| UNIPROTKB|G9MAN7 mds "Miltiradiene synthase" [Selaginella moellendorffii (taxid:88036)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6ET36 CPS1 "Ent-copalyl diphosphate synthase 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2140260 GA1 "GA REQUIRING 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2IHE0 CLS "Copal-8-ol diphosphate hydratase, chloroplastic" [Cistus creticus subsp. creticus (taxid:483148)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2008485 TPS04 "terpene synthase 04" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6Z5I0 CPS2 "Ent-copalyl diphosphate synthase 2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q84KL6 PT1 "(-)-alpha-pinene synthase, chloroplastic" [Pinus taeda (taxid:3352)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q84KL4 PT10 "(-)-alpha-terpineol synthase, chloroplastic" [Pinus taeda (taxid:3352)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q84KL3 PT30 "(+)-alpha-pinene synthase, chloroplastic" [Pinus taeda (taxid:3352)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SAK2 | KSB_ARATH | 4, ., 2, ., 3, ., 1, 9 | 0.5657 | 0.9869 | 0.9668 | yes | no |
| Q39548 | KSB_CUCMA | 4, ., 2, ., 3, ., 1, 9 | 0.5663 | 0.9661 | 0.9416 | N/A | no |
| Q0JA82 | KS1_ORYSJ | 4, ., 2, ., 3, ., 1, 9 | 0.5033 | 0.9388 | 0.9550 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.2.3 | 0.963 |
| 3rd Layer | 4.2.3.19 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 769 | |||
| PLN02279 | 784 | PLN02279, PLN02279, ent-kaur-16-ene synthase | 0.0 | |
| cd00684 | 542 | cd00684, Terpene_cyclase_plant_C1, Plant Terpene C | 1e-160 | |
| PLN02592 | 800 | PLN02592, PLN02592, ent-copalyl diphosphate syntha | 2e-96 | |
| cd00868 | 284 | cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla | 2e-69 | |
| pfam03936 | 270 | pfam03936, Terpene_synth_C, Terpene synthase famil | 2e-64 | |
| pfam01397 | 177 | pfam01397, Terpene_synth, Terpene synthase, N-term | 8e-48 | |
| cd00385 | 243 | cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth | 5e-22 | |
| pfam13243 | 109 | pfam13243, Prenyltrans_1, Prenyltransferase-like | 3e-04 | |
| pfam13243 | 109 | pfam13243, Prenyltrans_1, Prenyltransferase-like | 0.002 | |
| cd00687 | 303 | cd00687, Terpene_cyclase_nonplant_C1, Non-plant Te | 0.002 |
| >gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase | Back alignment and domain information |
|---|
Score = 1226 bits (3174), Expect = 0.0
Identities = 540/781 (69%), Positives = 621/781 (79%), Gaps = 23/781 (2%)
Query: 6 SHNLISS--SSLISGTANHGSKFGTEAKTNNLCFQRTKERTEKMFDKIELSVSPYDTAWV 63
S NL SS SS IS T K T+ + NN+ F+ TKER +KMFDK+ELSVS YDTAWV
Sbjct: 2 SINLRSSGCSSPISATLEPRLKTWTQTRANNVSFEGTKERIKKMFDKVELSVSSYDTAWV 61
Query: 64 AMVPSLELPQAPCFPQCINWLLDNQVNDGSWGL-HNRPSWLVKDAVLCTLACVLALKRWG 122
AMVPS QAP FP+C+ WLL+NQ+ DGSWGL H+ P LVKDA+ TLA +LALK+WG
Sbjct: 62 AMVPSPNSQQAPLFPECVKWLLENQLEDGSWGLPHDHPL-LVKDALSSTLASILALKKWG 120
Query: 123 IGEEQMNKGIQFIMSNFASVTDEKQQTPIGFDIIFPGMIECAQDLNLNLPLRSSDINAML 182
+GEEQ+NKG+QFI N ASVTDEKQ PIGFDIIFPGMIE A+DL+LNLPL S ++AML
Sbjct: 121 VGEEQINKGLQFIELNSASVTDEKQHKPIGFDIIFPGMIEYAKDLDLNLPLGSEVVDAML 180
Query: 183 ERRHLELNRN---YTAGRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAALT 239
+R L+L T GR+ YLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAA +
Sbjct: 181 HKRDLDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAAFS 240
Query: 240 HFHNAGCLHYLSSLLEKFGNAVPTVHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDET 299
H NAGCL YL SLL+KFGNAVPTV+PLD Y L+MV++LE LG+DRHFR EIK VLDET
Sbjct: 241 HLQNAGCLRYLRSLLQKFGNAVPTVYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDET 300
Query: 300 YRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVSSDPLTQFAEDNQFCNSLKGYLKDISAV 359
YR+WLQGEEEIFLDL TCA+AFR+LRLNGYDVSSDPL QFAED+ +SL GYLKD AV
Sbjct: 301 YRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDHFS-DSLGGYLKDTGAV 359
Query: 360 LELYRASQITIYPDESVLEKQQFWTSHFLKQELSSGSIHSNRFSQNVSSQVEDALKFPYH 419
LEL+RASQI YPDES+LEKQ WTSHFL+Q LS+ S ++R + + +VEDAL FPY+
Sbjct: 360 LELFRASQI-SYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYY 418
Query: 420 VNLERLAHRRNINLYNVDNMRILKTSYCSLNIGNEYFQKLAVDDFNICQSMHIEELKHLE 479
NLERLA+RR+I Y VD+ RILKTSY NI N+ F KLAV+DFN CQS+H EELK LE
Sbjct: 419 ANLERLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLE 478
Query: 480 RWVVEKRLDKLKFARQKQTYCYFSVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGS 539
RW+VE RLDKLKFARQK YCYFS AATLFSPELSDAR+SWAKN VLTT+VDDF+D+GGS
Sbjct: 479 RWIVENRLDKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGS 538
Query: 540 EEELLNLIDLLERWDVEEAKNCCSEQVEIIFSALRSTICEFGDKTLTWQGRNATSHIVET 599
EEEL NLI L+E+WDV + + CSEQVEIIFSALRSTI E GDK TWQGRN TSHI++
Sbjct: 539 EEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGRNVTSHIIKI 598
Query: 600 CL-------------RNKSVPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRDPE 646
L NKS PTLDEYM NAY SFALGPI+ PA+Y VGPKLSEEVV PE
Sbjct: 599 WLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDSPE 658
Query: 647 FHNLYKLVSTCGRLLNDIQGFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIKST 706
H LYKL+STCGRLLNDI+GFKRESKEGKLN+VSL M + +GN TE EAIE +K +I+S
Sbjct: 659 LHKLYKLMSTCGRLLNDIRGFKRESKEGKLNAVSLHMIHGNGNSTEEEAIESMKGLIESQ 718
Query: 707 RRELLRLVLKEEGSIVPRACKDLIWKMSKVLHLFYMNTDGFSSNVEMVKAVSEVVYEPIS 766
RRELLRLVL+E+GS VPR CKDL WKMSKVLHLFY DGF+SN +M+ V V+YEP+S
Sbjct: 719 RRELLRLVLQEKGSNVPRECKDLFWKMSKVLHLFYRKDDGFTSN-DMMSLVKSVIYEPVS 777
Query: 767 V 767
+
Sbjct: 778 L 778
|
Length = 784 |
| >gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 | Back alignment and domain information |
|---|
| >gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like | Back alignment and domain information |
|---|
| >gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like | Back alignment and domain information |
|---|
| >gnl|CDD|173835 cd00687, Terpene_cyclase_nonplant_C1, Non-plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 769 | |||
| PLN02279 | 784 | ent-kaur-16-ene synthase | 100.0 | |
| PLN02592 | 800 | ent-copalyl diphosphate synthase | 100.0 | |
| cd00684 | 542 | Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C | 100.0 | |
| PF01397 | 183 | Terpene_synth: Terpene synthase, N-terminal domain | 100.0 | |
| PF03936 | 270 | Terpene_synth_C: Terpene synthase family, metal bi | 100.0 | |
| cd00868 | 284 | Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp | 100.0 | |
| cd00687 | 303 | Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl | 99.94 | |
| PLN02150 | 96 | terpene synthase/cyclase family protein | 99.94 | |
| cd00385 | 243 | Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym | 99.59 | |
| PF13243 | 109 | Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A | 97.98 | |
| cd02889 | 348 | SQCY Squalene cyclase (SQCY) domain; found in clas | 97.9 | |
| PF13243 | 109 | Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A | 97.67 | |
| TIGR01787 | 621 | squalene_cyclas squalene/oxidosqualene cyclases. T | 97.65 | |
| cd02892 | 634 | SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; | 97.61 | |
| TIGR01507 | 635 | hopene_cyclase squalene-hopene cyclase. SHC is an | 97.46 | |
| TIGR03463 | 634 | osq_cycl 2,3-oxidosqualene cyclase. This model ide | 97.4 | |
| TIGR03463 | 634 | osq_cycl 2,3-oxidosqualene cyclase. This model ide | 97.34 | |
| TIGR01787 | 621 | squalene_cyclas squalene/oxidosqualene cyclases. T | 97.15 | |
| cd02892 | 634 | SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; | 97.07 | |
| PF13249 | 113 | Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B | 96.94 | |
| TIGR01507 | 635 | hopene_cyclase squalene-hopene cyclase. SHC is an | 96.87 | |
| PF13249 | 113 | Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B | 96.7 | |
| cd00688 | 300 | ISOPREN_C2_like This group contains class II terpe | 96.7 | |
| PLN03012 | 759 | Camelliol C synthase | 96.42 | |
| cd02889 | 348 | SQCY Squalene cyclase (SQCY) domain; found in clas | 96.25 | |
| cd02890 | 286 | PTase Protein prenyltransferase (PTase) domain, be | 96.21 | |
| cd02897 | 292 | A2M_2 Proteins similar to alpha2-macroglobulin (al | 96.17 | |
| PLN02993 | 763 | lupeol synthase | 96.06 | |
| cd02896 | 297 | complement_C3_C4_C5 Proteins similar to C3, C4 and | 96.05 | |
| cd00688 | 300 | ISOPREN_C2_like This group contains class II terpe | 95.81 | |
| cd02891 | 282 | A2M_like Proteins similar to alpha2-macroglobulin | 95.54 | |
| PLN03012 | 759 | Camelliol C synthase | 95.32 | |
| ) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432 | 44 | Prenyltrans: Prenyltransferase and squalene oxidas | 94.76 | |
| cd00686 | 357 | Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C | 94.75 | |
| PLN02993 | 763 | lupeol synthase | 94.4 | |
| PF07678 | 246 | A2M_comp: A-macroglobulin complement component; In | 93.94 | |
| PLN03201 | 316 | RAB geranylgeranyl transferase beta-subunit; Provi | 93.0 | |
| cd02890 | 286 | PTase Protein prenyltransferase (PTase) domain, be | 92.66 | |
| PF06330 | 376 | TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 | 92.33 | |
| COG1689 | 274 | Uncharacterized protein conserved in archaea [Func | 91.62 | |
| cd02893 | 299 | FTase Protein farnesyltransferase (FTase)_like pro | 90.63 | |
| cd02894 | 287 | GGTase-II Geranylgeranyltransferase type II (GGTas | 90.08 | |
| cd02895 | 307 | GGTase-I Geranylgeranyltransferase types I (GGTase | 89.92 | |
| cd02894 | 287 | GGTase-II Geranylgeranyltransferase type II (GGTas | 86.92 | |
| cd02891 | 282 | A2M_like Proteins similar to alpha2-macroglobulin | 85.9 | |
| cd02897 | 292 | A2M_2 Proteins similar to alpha2-macroglobulin (al | 85.82 | |
| TIGR02474 | 290 | pec_lyase pectate lyase, PelA/Pel-15E family. Memb | 84.08 |
| >PLN02279 ent-kaur-16-ene synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-213 Score=1854.87 Aligned_cols=738 Identities=71% Similarity=1.136 Sum_probs=704.4
Q ss_pred CcccccchhhHHHHHHHHHHHhcCCCcCCCcchhhhhccccCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCccchh
Q 004193 27 GTEAKTNNLCFQRTKERTEKMFDKIELSVSPYDTAWVAMVPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKD 106 (769)
Q Consensus 27 ~~~~~~~~~~~~~~~~~i~~~~~~g~~s~S~YDTAwva~vp~~~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d 106 (769)
+......+..+++++++||+||+..++|||+||||||||||+++|+++|||||||+|||+||++|||||.++.++++.+|
T Consensus 25 ~~~~~~~~~~~~~~~~~i~~~l~~~e~s~s~YDTAWvamv~~~~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D 104 (784)
T PLN02279 25 WTQTRANNVSFEGTKERIKKMFDKVELSVSSYDTAWVAMVPSPNSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKD 104 (784)
T ss_pred cccccCccccchhHHHHHHHHhccCcCCCchhhhHHHHhcccCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHH
Confidence 33344456778999999999999889999999999999999999999999999999999999999999987666788999
Q ss_pred HHhhhHHHHHHHHhhcCChHHHHHHHHHHHhccccccCccCCCCceEEEehhhHHHHHHHcCCCCCCCchhHHHHHHHhH
Q 004193 107 AVLCTLACVLALKRWGIGEEQMNKGIQFIMSNFASVTDEKQQTPIGFDIIFPGMIECAQDLNLNLPLRSSDINAMLERRH 186 (769)
Q Consensus 107 ~l~~Tla~vlAL~~w~~~~~~i~~g~~fl~~~~~~~~~~~~~~~vgfeii~P~ll~~a~~~gl~~~~~~~~~~~l~~~r~ 186 (769)
||+|||||||||++||+++.+|+||++||++|++.+.|+++++|||||||||+||++|+++||+|||+++.++.|+++|+
T Consensus 105 ~ll~TlAcvlAL~~w~~~~~~~~~gl~fi~~n~~~~~d~~~~~pvGfei~fP~ll~~a~~~gl~~~~~~~~l~~~~~~r~ 184 (784)
T PLN02279 105 ALSSTLASILALKKWGVGEEQINKGLQFIELNSASVTDEKQHKPIGFDIIFPGMIEYAKDLDLNLPLGSEVVDAMLHKRD 184 (784)
T ss_pred hhHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHhhcccccCCCceEEEehHHHHHHHHHcCCCCCCChHHHHHHHHhhh
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHhcccc---CCCCchhHHHHHhhccCCcchHHHhhccccCCCcccChhhHHHHHhccCCcchHHHHHHHHHHhCCCCCC
Q 004193 187 LELNRNY---TAGRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAALTHFHNAGCLHYLSSLLEKFGNAVPT 263 (769)
Q Consensus 187 ~kL~~~~---~~~~p~~llhslE~~~~~~d~~~v~~~~~~~GS~~~SPsaTAa~l~~~~d~~~~~YL~~~~~~~~g~VP~ 263 (769)
.||+|++ .++.|++|+||||||++.+||++|+++|++|||||+|||||||||||++|++|++||++++++|+||||+
T Consensus 185 ~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~Gs~~~SPsaTAa~l~~~~~~~~~~yL~~~~~~~~g~vP~ 264 (784)
T PLN02279 185 LDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAAFSHLQNAGCLRYLRSLLQKFGNAVPT 264 (784)
T ss_pred HHHhhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCCCCcccCcHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC
Confidence 9999999 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHcCCcccchhhhcccccC
Q 004193 264 VHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVSSDPLTQFAEDN 343 (769)
Q Consensus 264 ~yP~~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FrlLR~~Gy~VS~dvf~~F~~~g 343 (769)
+||+++||++|+||+|+||||+|||++||+++|+.+|++|.+++++...|+++|||+|||||||||+||||+|++|++++
T Consensus 265 ~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~~ 344 (784)
T PLN02279 265 VYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDH 344 (784)
T ss_pred CCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCCc
Confidence 99999999999999999999999999999999999999997655667789999999999999999999999999999777
Q ss_pred CccccccccccchHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhccCCCCCCCCCCchHHHHHHhccCCcccchh
Q 004193 344 QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQELSSGSIHSNRFSQNVSSQVEDALKFPYHVNLE 423 (769)
Q Consensus 344 ~F~~~~~e~~~dv~~lL~Ly~As~l~~~~gE~iL~ea~~fs~~~L~~~~~~~~~~dw~~~~~l~~eV~~aL~~P~~~~l~ 423 (769)
|++++++..+|++|||+||||||+++ |||+|||+|+.||++||++.++++.+.|-.+.++|++||+|||++|||++||
T Consensus 345 -F~~~l~~~~~dv~gmL~LY~AS~l~~-~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~ 422 (784)
T PLN02279 345 -FSDSLGGYLKDTGAVLELFRASQISY-PDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLE 422 (784)
T ss_pred -ccchhcccchhhHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCcc
Confidence 99999999999999999999999999 9999999999999999999987665555456789999999999999999999
Q ss_pred hhHHhhhhhhhcccchhhhhccccccCcCcHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCcchhhhHhHHHHHHH
Q 004193 424 RLAHRRNINLYNVDNMRILKTSYCSLNIGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLDKLKFARQKQTYCYFS 503 (769)
Q Consensus 424 Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAklDFn~~Q~~hq~El~~l~rWwke~~l~~l~faRdrlve~Yf~ 503 (769)
|||||+||++|+++++|||||+||||+++|++||||||+|||+||++||+||++++|||+++||.+|||+|||++|||||
T Consensus 423 RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L~~L~faRdr~ve~Yf~ 502 (784)
T PLN02279 423 RLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRLDKLKFARQKLAYCYFS 502 (784)
T ss_pred HHHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCCccCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccCCCchhHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHhhhcCcch-hccCCChhHHHHHHHHHhhHHHHHH
Q 004193 504 VAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSEEELLNLIDLLERWDVEE-AKNCCSEQVEIIFSALRSTICEFGD 582 (769)
Q Consensus 504 aaa~~fEPe~s~~Rl~~aK~~~l~tviDD~fD~~gt~eEl~~ft~aierWD~~~-~~~l~peymk~~f~aL~~~~~ei~~ 582 (769)
++|++||||||.+|++|||+++|++++||+||+|||+|||++||+||+|||.++ ++.+ |+|||+||.+|++++||++.
T Consensus 503 aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~l-peymki~f~aL~~t~nei~~ 581 (784)
T PLN02279 503 AAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFC-SEQVEIIFSALRSTISEIGD 581 (784)
T ss_pred HHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999984 4677 99999999999999999999
Q ss_pred HHhhhcccchhHHHHHHHH-------------hCCCCCChhhhhhhhccccchhhhHHHHhhhcCCCCchhhhcCccchh
Q 004193 583 KTLTWQGRNATSHIVETCL-------------RNKSVPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRDPEFHN 649 (769)
Q Consensus 583 ~~~~~qgr~v~~yl~e~W~-------------~~g~vPt~eEYl~~a~vS~g~~~~~l~~~~~~G~~l~~e~~~~~~~~~ 649 (769)
++.+.|||++++|++++|. ++||+||+||||+|+.+|+|++++++.+++++|+.+|+++++|++|++
T Consensus 582 ~~~~~qGr~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~~~~~~ 661 (784)
T PLN02279 582 KAFTWQGRNVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDSPELHK 661 (784)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhCcchhH
Confidence 9999999999999988765 789999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHhhhccccccchhhhcCCCCCeeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 004193 650 LYKLVSTCGRLLNDIQGFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKEEGSIVPRACKDL 729 (769)
Q Consensus 650 L~~~~~~I~RL~NDi~S~k~E~~rG~~n~V~cyMke~gg~vS~EeA~~~i~~~ie~~wkeln~~~l~~~~~~vp~~~~~~ 729 (769)
|+++++.||||+|||+||++|+++|++|+|+|||+|+++.+|+|||+++++++|+++||+||++|++++++.+|++||++
T Consensus 662 L~~l~s~I~RLlNDI~S~e~E~~rG~~nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~~~~~~ 741 (784)
T PLN02279 662 LYKLMSTCGRLLNDIRGFKRESKEGKLNAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPRECKDL 741 (784)
T ss_pred HHHHHHHHHHHHHhccccHhHHhCCCcceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999984229999999999999999999999999986544699999999
Q ss_pred HHhhhhhcccccccCCCCCChHHHHHHHHhhhcccccCC
Q 004193 730 IWKMSKVLHLFYMNTDGFSSNVEMVKAVSEVVYEPISVN 768 (769)
Q Consensus 730 ~ln~aR~~~~~Y~~~Dg~~~~~~~k~~I~~ll~epv~~~ 768 (769)
|||++|++++||+++||||.+ +||++|+++|++||++.
T Consensus 742 ~ln~aR~~~~~Y~~~Dgyt~~-~~k~~i~~ll~ePi~l~ 779 (784)
T PLN02279 742 FWKMSKVLHLFYRKDDGFTSN-DMMSLVKSVIYEPVSLQ 779 (784)
T ss_pred HHHHHHhhhhheeCCCCCChH-HHHHHHHHHhccCCcCC
Confidence 999999999999999999976 89999999999999873
|
|
| >PLN02592 ent-copalyl diphosphate synthase | Back alignment and domain information |
|---|
| >cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family | Back alignment and domain information |
|---|
| >PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family | Back alignment and domain information |
|---|
| >cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 | Back alignment and domain information |
|---|
| >cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >PLN02150 terpene synthase/cyclase family protein | Back alignment and domain information |
|---|
| >cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A | Back alignment and domain information |
|---|
| >cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A | Back alignment and domain information |
|---|
| >TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases | Back alignment and domain information |
|---|
| >cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >TIGR01507 hopene_cyclase squalene-hopene cyclase | Back alignment and domain information |
|---|
| >TIGR03463 osq_cycl 2,3-oxidosqualene cyclase | Back alignment and domain information |
|---|
| >TIGR03463 osq_cycl 2,3-oxidosqualene cyclase | Back alignment and domain information |
|---|
| >TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases | Back alignment and domain information |
|---|
| >cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C | Back alignment and domain information |
|---|
| >TIGR01507 hopene_cyclase squalene-hopene cyclase | Back alignment and domain information |
|---|
| >PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C | Back alignment and domain information |
|---|
| >cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
|---|
| >PLN03012 Camelliol C synthase | Back alignment and domain information |
|---|
| >cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >PLN02993 lupeol synthase | Back alignment and domain information |
|---|
| >cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement | Back alignment and domain information |
|---|
| >cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
|---|
| >cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >PLN03012 Camelliol C synthase | Back alignment and domain information |
|---|
| >PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family | Back alignment and domain information |
|---|
| >cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >PLN02993 lupeol synthase | Back alignment and domain information |
|---|
| >PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family | Back alignment and domain information |
|---|
| >PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional | Back alignment and domain information |
|---|
| >cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 | Back alignment and domain information |
|---|
| >COG1689 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
| >cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 769 | ||||
| 3s9v_A | 785 | Abietadiene Synthase From Abies Grandis Length = 78 | 1e-108 | ||
| 3sae_A | 817 | Structure Of A Three-Domain Sesquiterpene Synthase: | 1e-101 | ||
| 3p5p_A | 764 | Crystal Structure Of Taxadiene Synthase From Pacifi | 2e-92 | ||
| 3pya_A | 727 | Crystal Structure Of Ent-Copalyl Diphosphate Syntha | 1e-70 | ||
| 3n0f_A | 555 | Crystal Structure Of Isoprene Synthase From Grey Po | 8e-38 | ||
| 2ong_A | 543 | Crystal Structure Of Of Limonene Synthase With 2- F | 4e-30 | ||
| 1hx9_A | 548 | Crystal Structure Of Teas W273s Form 1 Length = 548 | 4e-27 | ||
| 1hxg_A | 548 | Crystal Structure Of Teas W273sC440W Length = 548 | 4e-27 | ||
| 3m01_A | 550 | The Crystal Structure Of 5-Epi-Aristolochene Syntha | 3e-26 | ||
| 5eau_A | 548 | 5-Epi-Aristolochene Synthase From Nicotiana Tabacum | 3e-26 | ||
| 4di5_A | 535 | Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt | 3e-26 | ||
| 3lz9_A | 550 | The Crystal Structure Of 5-Epi-Aristolochene Syntha | 3e-26 | ||
| 1hxc_A | 548 | Crystal Structure Of Teas C440w Length = 548 | 3e-26 | ||
| 1n1b_A | 549 | Crystal Structure Of (+)-bornyl Diphosphate Synthas | 5e-26 | ||
| 2j5c_A | 569 | Rational Conversion Of Substrate And Product Specif | 5e-26 | ||
| 5eas_A | 548 | 5-Epi-Aristolochene Synthase From Nicotiana Tabacum | 6e-26 | ||
| 5eat_A | 548 | 5-Epi-Aristolochene Synthase From Nicotiana Tabacum | 6e-26 | ||
| 3g4d_A | 554 | Crystal Structure Of (+)-Delta-Cadinene Synthase Fr | 2e-24 |
| >pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 | Back alignment and structure |
|
| >pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 | Back alignment and structure |
| >pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 | Back alignment and structure |
| >pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 | Back alignment and structure |
| >pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 | Back alignment and structure |
| >pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 | Back alignment and structure |
| >pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 | Back alignment and structure |
| >pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 | Back alignment and structure |
| >pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 | Back alignment and structure |
| >pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 | Back alignment and structure |
| >pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 | Back alignment and structure |
| >pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 | Back alignment and structure |
| >pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 | Back alignment and structure |
| >pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 | Back alignment and structure |
| >pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 | Back alignment and structure |
| >pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 | Back alignment and structure |
| >pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 | Back alignment and structure |
| >pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 | Back alignment and structure |
|---|
Score = 606 bits (1563), Expect = 0.0
Identities = 245/760 (32%), Positives = 401/760 (52%), Gaps = 37/760 (4%)
Query: 37 FQRTKERTEKMFDKI---ELSVSPYDTAWVAMVPSLELPQAPCFPQCINWLLDNQVNDGS 93
+ + MF + E + S YDTAWVA +P+++ P FP+ + W+L NQ+ DGS
Sbjct: 33 IETLISEIKNMFRCMGYGETNPSAYDTAWVARIPAVDGSDNPHFPETVEWILQNQLKDGS 92
Query: 94 WGLHNRPSWLVKDAVLCTLACVLALKRWGIGEEQMNKGIQFIMSNFASVTDEKQQ-TPIG 152
WG +L D +L TLAC++ L W GE Q+ KGI+F + + DE P G
Sbjct: 93 WGEGF--YFLAYDRILATLACIITLTLWRTGETQVQKGIEFFRTQAGKMEDEADSHRPSG 150
Query: 153 FDIIFPGMIECAQDLNLNLPLRSSDINAMLERRHLELNR---NYTAGRKEYLAYVSEGIG 209
F+I+FP M++ A+ L L+LP + ++E+R +L R + L Y EG+
Sbjct: 151 FEIVFPAMLKEAKILGLDLPYDLPFLKQIIEKREAKLKRIPTDVLYALPTTLLYSLEGLQ 210
Query: 210 KLQDWEMVMKYQRKNGSLFNSPSTTAAALTHFHNAGCLHYLSSLLEKFGNAVPTVHPLDI 269
++ DW+ +MK Q K+GS +SP++TAA N CL +L+ +L+KFGN VP +PLD+
Sbjct: 211 EIVDWQKIMKLQSKDGSFLSSPASTAAVFMRTGNKKCLDFLNFVLKKFGNHVPCHYPLDL 270
Query: 270 YINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQ-----GEEEIFLDLTTCAMAFRLL 324
+ L V+++E LG+DRHF+ EIK LD Y W + E D+ AM R+L
Sbjct: 271 FERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRIL 330
Query: 325 RLNGYDVSSDPLTQFAEDNQ-FCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFW 383
RL+GY+VSSD L F ++N F L + ++ +L + R S ++ E+++E+ +
Sbjct: 331 RLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFP-GETIMEEAKLC 389
Query: 384 TSHFLKQELSSGSIHSNRF-SQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDNMRIL 442
T +L+ L + +N+ +VE ALK+P+H ++ RL R I Y D++ +
Sbjct: 390 TERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLG 449
Query: 443 KTSYCSLNIGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLDKLKFARQKQTYCYF 502
KT Y I NE + +LA DFN QS+H EL+ L RW L F R++ T YF
Sbjct: 450 KTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRERVTEIYF 509
Query: 503 SVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSEEELLNLIDLLERWDVEEAKNCC 562
S A+ +F PE S R + K + T I+DD YD GS ++L + ++RWD +
Sbjct: 510 SPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWD-LSLVDQM 568
Query: 563 SEQVEIIFSALRSTICEFGDKTLTWQGRNATSHIVETC-------------LRNKSVPTL 609
+Q++I F +T + + QGR+ +I K VP+
Sbjct: 569 PQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSF 628
Query: 610 DEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRDPE-FHNLYKLVSTCGRLLNDIQGFK 668
+EY+ENA S ALG ++ + F G L++EV+ + +L+ GRL+ND + ++
Sbjct: 629 NEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQ 688
Query: 669 RESKEGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKEEGSIVPRACKD 728
E +G++ S ++E EA++ + V+++ EL R + + +P K
Sbjct: 689 AERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVN---NKIPDIYKR 745
Query: 729 LIWKMSKVLHLFYMNTDGF--SSNVEMVKAVSEVVYEPIS 766
L+++ ++++ LFYM DG S ++E+ + V +++P++
Sbjct: 746 LVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785
|
| >3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 | Back alignment and structure |
|---|
| >3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 | Back alignment and structure |
|---|
| >3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 | Back alignment and structure |
|---|
| >1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 | Back alignment and structure |
|---|
| >2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 | Back alignment and structure |
|---|
| >3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 | Back alignment and structure |
|---|
| >2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 | Back alignment and structure |
|---|
| >3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 | Back alignment and structure |
|---|
| >3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 | Back alignment and structure |
|---|
| >1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 | Back alignment and structure |
|---|
| >3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 | Back alignment and structure |
|---|
| >3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 | Back alignment and structure |
|---|
| >1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 769 | |||
| 3sdr_A | 817 | Alpha-bisabolene synthase; lyase, terpene synthase | 100.0 | |
| 3s9v_A | 785 | Abietadiene synthase, chloroplastic; alpha bundle/ | 100.0 | |
| 3p5p_A | 764 | Taxadiene synthase; class I and II terpene cyclase | 100.0 | |
| 3pya_A | 727 | ENT-copalyl diphosphate synthase, chloroplastic; c | 100.0 | |
| 3g4d_A | 554 | (+)-delta-cadinene synthase isozyme XC1; cyclase, | 100.0 | |
| 3n0f_A | 555 | Isoprene synthase; terpene cyclase fold, hemiterpe | 100.0 | |
| 3m00_A | 550 | Aristolochene synthase; plant terpenoid cyclase, l | 100.0 | |
| 2ong_A | 543 | 4S-limonene synthase; monoterpene synthase, monote | 100.0 | |
| 1n1b_A | 549 | (+)-bornyl diphosphate synthase; terpene synthase | 100.0 | |
| 2j5c_A | 569 | 1,8-cineole synthase; terpene synthases, 1, monote | 100.0 | |
| 1ps1_A | 337 | Pentalenene synthase; antibiotic biosynthesis, ses | 100.0 | |
| 1di1_A | 300 | Aristolochene synthase; sesquiterpene cyclase, iso | 100.0 | |
| 3bny_A | 320 | Aristolochene synthase; sesquiterpene cyclase, iso | 100.0 | |
| 3kb9_A | 382 | EPI-isozizaene synthase; terpenoid cyclase, alpha- | 100.0 | |
| 3v1v_A | 433 | 2-MIB synthase, 2-methylisoborneol synthase; class | 99.92 | |
| 1yyq_A | 374 | Trichodiene synthase; terpenoid cyclase fold, site | 99.35 | |
| 1w6k_A | 732 | Lanosterol synthase; cyclase, cholesterol, monotop | 97.69 | |
| 2sqc_A | 631 | Squalene-hopene cyclase; isomerase, triterpene cyc | 97.68 | |
| 3dss_B | 331 | Geranylgeranyl transferase type-2 subunit beta; pr | 97.56 | |
| 2h6f_B | 437 | Protein farnesyltransferase beta subunit; ftase, f | 96.93 | |
| 1qqf_A | 277 | Protein (complement C3DG); alpha-alpha barrel, imm | 95.97 | |
| 2sqc_A | 631 | Squalene-hopene cyclase; isomerase, triterpene cyc | 95.94 | |
| 1hzf_A | 367 | Complement factor C4A; alpha-alpha 6 barrel, immun | 95.74 | |
| 2wy7_A | 310 | Complement C3D fragment; immune system, immune res | 95.55 | |
| 1n4q_B | 377 | Geranyltransferase type-I beta subunit; protein ge | 95.35 | |
| 1w6k_A | 732 | Lanosterol synthase; cyclase, cholesterol, monotop | 94.51 | |
| 3dss_B | 331 | Geranylgeranyl transferase type-2 subunit beta; pr | 94.43 | |
| 2h6f_B | 437 | Protein farnesyltransferase beta subunit; ftase, f | 94.1 | |
| 4acq_A | 1451 | Alpha-2-macroglobulin; hydrolase inhibitor, protei | 93.81 | |
| 2hr0_B | 915 | Complement C3 alpha' chain; complement component C | 91.58 | |
| 1n4q_B | 377 | Geranyltransferase type-I beta subunit; protein ge | 90.1 | |
| 1hzf_A | 367 | Complement factor C4A; alpha-alpha 6 barrel, immun | 86.88 | |
| 1qqf_A | 277 | Protein (complement C3DG); alpha-alpha barrel, imm | 86.74 | |
| 2wy7_A | 310 | Complement C3D fragment; immune system, immune res | 85.59 | |
| 3q7a_B | 520 | Farnesyltransferase beta subunit; protein prenyltr | 80.46 |
| >3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-217 Score=1909.84 Aligned_cols=750 Identities=33% Similarity=0.572 Sum_probs=693.8
Q ss_pred cCcccccCcCCCCCCCCc--------cc---ccchhhHHHHHHHHHHHhc----CC---CcCCCcchhhhhccccCCCCC
Q 004193 11 SSSSLISGTANHGSKFGT--------EA---KTNNLCFQRTKERTEKMFD----KI---ELSVSPYDTAWVAMVPSLELP 72 (769)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~i~~~~~----~g---~~s~S~YDTAwva~vp~~~~~ 72 (769)
.+++..||++|++|++|+ .+ .++.+++++|+++||+++. +| ++|||+||||||||||+++|+
T Consensus 19 ~~~~~~Rrsany~Ps~W~~~~i~sl~~~~~~~~~~~~~~~Lie~VK~~l~~~~~~g~~g~~S~S~YDTAWVAmvp~~~~~ 98 (817)
T 3sdr_A 19 STSGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLNPAITGDGESMITPSAYDTAWVARVPAIDGS 98 (817)
T ss_dssp ----------------CHHHHHHTCCCGGGSHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCCCCHHHHHHHHTCBCTTSC
T ss_pred cCCCccCCCCCCCCCCCCCCeeeccCCcccchhHHHHHHHHHHHHHHHhccccCCCCCcccccCHHHhhHHheeecCCCC
Confidence 567779999999999996 11 2347889999999999985 45 999999999999999999999
Q ss_pred CCCCchHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhccccccCc--cCCCC
Q 004193 73 QAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIGEEQMNKGIQFIMSNFASVTDE--KQQTP 150 (769)
Q Consensus 73 ~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~~~~i~~g~~fl~~~~~~~~~~--~~~~~ 150 (769)
++||||+||+|||+||++|||||++++ ++.+|||+||||||+||++|++++++|+||++||++|++.+.|+ ++++|
T Consensus 99 ~~p~Fp~~~~wil~nQ~~DGsWg~~~~--~~~~d~ll~TlAcvlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~~ 176 (817)
T 3sdr_A 99 ARPQFPQTVDWILKNQLKDGSWGIQSH--FLLSDRLLATLSCVLVLLKWNVGDLQVEQGIEFIKSNLELVKDETDQDSLV 176 (817)
T ss_dssp SSBSSHHHHHHHHHCCCTTSCCSCTTC--CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCSGGGSCSCC
T ss_pred CCCCchHHHHHHHHccCCCCCCCCCCC--cchHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhcccccCCCC
Confidence 999999999999999999999998765 88999999999999999999999999999999999999999876 78999
Q ss_pred ceEEEehhhHHHHHHHcCCCCCCCchhHHHHHHHhHHHhcccc---CCCCchhHHHHHhhccCCcchHHHhhccccCCCc
Q 004193 151 IGFDIIFPGMIECAQDLNLNLPLRSSDINAMLERRHLELNRNY---TAGRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSL 227 (769)
Q Consensus 151 vgfeii~P~ll~~a~~~gl~~~~~~~~~~~l~~~r~~kL~~~~---~~~~p~~llhslE~~~~~~d~~~v~~~~~~~GS~ 227 (769)
||||||||+||++|+++||+||++.+.++.|.++|++||+|++ +|++|++|+||||||++.+||++|+++|++||||
T Consensus 177 vgfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~kL~~~~~~~~~~~p~~llhslE~l~~~~d~~~~~~~q~~~GS~ 256 (817)
T 3sdr_A 177 TDFEIIFPSLLREAQSLRLGLPYDLPYIHLLQTKRQERLAKLSREEIYAVPSPLLYSLEGIQDIVEWERIMEVQSQDGSF 256 (817)
T ss_dssp TTHHHHHHHHHHHHHHTTCSCCTTCHHHHHHHHHHHHHHHTCCSGGGGTSCCGGGGGGGGCTTTCCTTTGGGGCCTTSCB
T ss_pred cceeeeHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHhCCChhhccCCCchHHHHHHhccccccHHHHHhccCCCCCc
Confidence 9999999999999999999999999999999999999999999 7899999999999999999999999999999999
Q ss_pred ccChhhHHHHHhccCCcchHHHHHHHHHHhCCCCCCcCCcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhc--
Q 004193 228 FNSPSTTAAALTHFHNAGCLHYLSSLLEKFGNAVPTVHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQ-- 305 (769)
Q Consensus 228 ~~SPsaTAa~l~~~~d~~~~~YL~~~~~~~~g~VP~~yP~~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~-- 305 (769)
|+|||||||||||++|++|++||++++++|+||||++||+++||+||+||+||||||+|||++||+++|+++|+.|.+
T Consensus 257 ~~SPsaTAa~l~~~~d~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~g 336 (817)
T 3sdr_A 257 LSSPASTACVFMHTGDAKCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERG 336 (817)
T ss_dssp TTBHHHHHHHHHHHCCHHHHHHHHHHHHHHSSCCCSSSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTC
T ss_pred ccCHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCccCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred ---CCcccCCCHHHHHHHHHHHHHcCCcccchhhhccc-ccCCccccccccccchHHHHHHHhhccCCCCCChhHHHHHH
Q 004193 306 ---GEEEIFLDLTTCAMAFRLLRLNGYDVSSDPLTQFA-EDNQFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQ 381 (769)
Q Consensus 306 ---~~~~~~~Dl~~tAl~FrlLR~~Gy~VS~dvf~~F~-~~g~F~~~~~e~~~dv~~lL~Ly~As~l~~~~gE~iL~ea~ 381 (769)
++++...|+|+||++|||||||||+||||+|++|+ ++|+|+++++++.+|++|||+||||||+++ |||+|||+|+
T Consensus 337 i~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~-~gE~iLdeA~ 415 (817)
T 3sdr_A 337 IGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAF-PGENILDEAK 415 (817)
T ss_dssp CCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCC--CBCCCSSCHHHHHHHHHHHHHHHTTCC-TTCHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhhcCCCceechhhhchhhHHHHHHHHHHhcCC-CChHHHHHHH
Confidence 12345689999999999999999999999999999 779999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHhccCCCCC-CCCCCchHHHHHHhccCCcccchhhhHHhhhhhhhcccchhhhhccccccCcCcHHHHHHh
Q 004193 382 FWTSHFLKQELSSGSIHS-NRFSQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDNMRILKTSYCSLNIGNEYFQKLA 460 (769)
Q Consensus 382 ~fs~~~L~~~~~~~~~~d-w~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelA 460 (769)
.||++||++.+..+...| |++.++|++||+|||++|||++|||||||+||++|+++++|||||+||||+++|++|||||
T Consensus 416 ~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelA 495 (817)
T 3sdr_A 416 SFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELG 495 (817)
T ss_dssp HHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHH
Confidence 999999999887655556 8777899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCcchhhhHhHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhhhhhccCCCCH
Q 004193 461 VDDFNICQSMHIEELKHLERWVVEKRLDKLKFARQKQTYCYFSVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSE 540 (769)
Q Consensus 461 klDFn~~Q~~hq~El~~l~rWwke~~l~~l~faRdrlve~Yf~aaa~~fEPe~s~~Rl~~aK~~~l~tviDD~fD~~gt~ 540 (769)
|||||+||++||+||++++||||++||.+|||+|||++|||||++|++|||+||.+|++|||+++|+++|||+||+|||+
T Consensus 496 KlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~ 575 (817)
T 3sdr_A 496 KLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTL 575 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSGGGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHhhhhhhhhceeHHhcCCCcCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcchhccCCChhHHHHHHHHHhhHHHHHHHHhhhcccchhHHHHHHHH-------------hCCCCC
Q 004193 541 EELLNLIDLLERWDVEEAKNCCSEQVEIIFSALRSTICEFGDKTLTWQGRNATSHIVETCL-------------RNKSVP 607 (769)
Q Consensus 541 eEl~~ft~aierWD~~~~~~l~peymk~~f~aL~~~~~ei~~~~~~~qgr~v~~yl~e~W~-------------~~g~vP 607 (769)
||+++||+||+|||++++++| |||||+||.+|++++||++.++.++||+++++|++++|. ++||+|
T Consensus 576 eEl~~ft~ai~RWD~~~~~~L-Peymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvP 654 (817)
T 3sdr_A 576 DELKLFTEAVRRWDLSFTENL-PDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVP 654 (817)
T ss_dssp HHHHHHHHHHHHTCGGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCchhhhcC-chHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999 999999999999999999999999999999999888655 789999
Q ss_pred Chhhhhhhhccccchhh-hHHHHhhhcCCCCchhhhcCccch---hHHHHHHHHhhhccccccchhhhcCCCC-Ceeeee
Q 004193 608 TLDEYMENAYASFALGP-IIFPAVYFVGPKLSEEVVRDPEFH---NLYKLVSTCGRLLNDIQGFKRESKEGKL-NSVSLQ 682 (769)
Q Consensus 608 t~eEYl~~a~vS~g~~~-~~l~~~~~~G~~l~~e~~~~~~~~---~L~~~~~~I~RL~NDi~S~k~E~~rG~~-n~V~cy 682 (769)
|+||||+||.+|+|+++ +++.+++++|+.+|+|+++|+.|+ +|++++++|+||+|||+||++|++||++ |+|+||
T Consensus 655 t~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cY 734 (817)
T 3sdr_A 655 TLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECY 734 (817)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHH
T ss_pred CHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHH
Confidence 99999999999999998 778888889999999999998766 9999999999999999999999999999 999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhhhhcccccccCCCCCChH-HHHHHHHhhh
Q 004193 683 MTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKEEGSIVPRACKDLIWKMSKVLHLFYMNTDGFSSNV-EMVKAVSEVV 761 (769)
Q Consensus 683 Mke~gg~vS~EeA~~~i~~~ie~~wkeln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dg~~~~~-~~k~~I~~ll 761 (769)
|||||| +|+|+|+++++++|+++||+||++|++++ .+|++|+++++|++|++++||+++||||.|+ +||++|+++|
T Consensus 735 Mke~~g-vS~EeA~~~i~~~Ie~~wKeln~e~l~~~--~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll 811 (817)
T 3sdr_A 735 MKDHPE-CTEEEALDHIYSILEPAVKELTREFLKPD--DVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECL 811 (817)
T ss_dssp HHHSTT-SCHHHHHHHHHHHHHHHHHHHHHHHHSCC--SSCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHH
T ss_pred HHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHh
Confidence 999965 99999999999999999999999999865 4999999999999999999999999999985 8999999999
Q ss_pred cccccC
Q 004193 762 YEPISV 767 (769)
Q Consensus 762 ~epv~~ 767 (769)
++||++
T Consensus 812 ~~pi~l 817 (817)
T 3sdr_A 812 IEPLPL 817 (817)
T ss_dssp TCCCCC
T ss_pred cCCCCC
Confidence 999985
|
| >3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} | Back alignment and structure |
|---|
| >3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* | Back alignment and structure |
|---|
| >3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* | Back alignment and structure |
|---|
| >3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* | Back alignment and structure |
|---|
| >3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* | Back alignment and structure |
|---|
| >3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* | Back alignment and structure |
|---|
| >2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* | Back alignment and structure |
|---|
| >1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* | Back alignment and structure |
|---|
| >2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} | Back alignment and structure |
|---|
| >1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A | Back alignment and structure |
|---|
| >1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A | Back alignment and structure |
|---|
| >3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* | Back alignment and structure |
|---|
| >3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* | Back alignment and structure |
|---|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* | Back alignment and structure |
|---|
| >1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A | Back alignment and structure |
|---|
| >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* | Back alignment and structure |
|---|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* | Back alignment and structure |
|---|
| >3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* | Back alignment and structure |
|---|
| >2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... | Back alignment and structure |
|---|
| >1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A | Back alignment and structure |
|---|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* | Back alignment and structure |
|---|
| >1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 | Back alignment and structure |
|---|
| >2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A | Back alignment and structure |
|---|
| >1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* | Back alignment and structure |
|---|
| >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* | Back alignment and structure |
|---|
| >3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* | Back alignment and structure |
|---|
| >2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... | Back alignment and structure |
|---|
| >4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... | Back alignment and structure |
|---|
| >1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* | Back alignment and structure |
|---|
| >1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 | Back alignment and structure |
|---|
| >1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A | Back alignment and structure |
|---|
| >2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A | Back alignment and structure |
|---|
| >3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 769 | ||||
| d5easa2 | 328 | a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase | 1e-83 | |
| d1n1ba2 | 328 | a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth | 2e-82 | |
| d1n1ba1 | 207 | a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha | 9e-41 | |
| d5easa1 | 197 | a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase | 3e-38 | |
| d1ps1a_ | 311 | a.128.1.4 (A:) Pentalenene synthase {Streptomyces | 5e-31 | |
| d1di1a_ | 300 | a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen | 3e-25 | |
| d1w6ka2 | 279 | a.102.4.2 (A:100-378) Lanosterol synthase {Human ( | 6e-04 |
| >d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Terpenoid cyclase C-terminal domain domain: 5-Epi-aristolochene synthase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 266 bits (682), Expect = 1e-83
Identities = 63/331 (19%), Positives = 143/331 (43%), Gaps = 20/331 (6%)
Query: 453 NEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRL-DKLKFARQKQTYCYFSVAATLFSP 511
N + A DFN+ Q +H +EL + RW + L +AR + CYF F P
Sbjct: 2 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 61
Query: 512 ELSDARMSWAKNAVLTTIVDDFYDLGGSEEELLNLIDLLERWDVEEAKNCCSEQVEIIFS 571
+ S AR+ K + +IVDD +D G+ +EL D ++RWD + + ++I +
Sbjct: 62 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWD-INEIDRLPDYMKISYK 120
Query: 572 ALRSTICEFGDKTLTWQGRNATSHIVE-------------TCLRNKSVPTLDEYMENAYA 618
A+ ++ + + + H +E T P + EY+ NA A
Sbjct: 121 AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA 180
Query: 619 SFALGPIIFPAVYFVGPKLSEEVVRDPEFHNLYKLVSTCGRLLNDIQGFKRESKEGKLNS 678
+ + + + ++ + + + R+++D ++ E G++ +
Sbjct: 181 TTTYYYLATTSYLGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIAT 240
Query: 679 VSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKEEGSIVPRACKDLIWKMSKVLH 738
++ D ++ EA+ K + + ++ +++ +L+ + V I +++++
Sbjct: 241 -GIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP--TPVSTEFLTPILNLARIVE 297
Query: 739 LFYM-NTDGFSSNVEMVKA-VSEVVYEPISV 767
+ Y+ N DG++ +++K + ++ + I +
Sbjct: 298 VTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 328
|
| >d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 | Back information, alignment and structure |
|---|
| >d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 | Back information, alignment and structure |
|---|
| >d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 | Back information, alignment and structure |
|---|
| >d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 | Back information, alignment and structure |
|---|
| >d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 | Back information, alignment and structure |
|---|
| >d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 769 | |||
| d1n1ba2 | 328 | (+)-bornyl diphosphate synthase {Garden sage (Salv | 100.0 | |
| d5easa2 | 328 | 5-Epi-aristolochene synthase {Tobacco (Nicotiana t | 100.0 | |
| d1n1ba1 | 207 | (+)-bornyl diphosphate synthase {Garden sage (Salv | 100.0 | |
| d5easa1 | 197 | 5-Epi-aristolochene synthase {Tobacco (Nicotiana t | 100.0 | |
| d1ps1a_ | 311 | Pentalenene synthase {Streptomyces sp., UC5319 [Ta | 99.96 | |
| d1di1a_ | 300 | Aristolochene synthase {Fungus (Penicillium roquef | 99.87 | |
| d1kiya_ | 354 | Trichodiene synthase {Fusarium sporotrichioides [T | 98.53 | |
| d2sqca1 | 352 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 97.69 | |
| d2sqca1 | 352 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 97.1 | |
| d1w6ka1 | 448 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 96.56 | |
| d1w6ka2 | 279 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 96.42 | |
| d2sqca2 | 271 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 96.35 | |
| d3dssb1 | 325 | Rab geranylgeranyltransferase, beta subunit {Rat ( | 96.21 | |
| d2sqca2 | 271 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 95.66 | |
| d1w6ka1 | 448 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 95.02 | |
| d1r76a_ | 408 | Polygalacturonic acid lyase (pectate lyase) {Azosp | 82.55 | |
| d3dssb1 | 325 | Rab geranylgeranyltransferase, beta subunit {Rat ( | 82.4 | |
| d1gxma_ | 324 | Polygalacturonic acid lyase (pectate lyase) {Cellv | 82.27 |
| >d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Terpenoid cyclase C-terminal domain domain: (+)-bornyl diphosphate synthase species: Garden sage (Salvia officinalis) [TaxId: 38868]
Probab=100.00 E-value=2.1e-88 Score=731.62 Aligned_cols=310 Identities=24% Similarity=0.365 Sum_probs=283.6
Q ss_pred CcHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCC-CcchhhhHhHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhh
Q 004193 452 GNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRL-DKLKFARQKQTYCYFSVAATLFSPELSDARMSWAKNAVLTTIV 530 (769)
Q Consensus 452 ~n~~lLelAklDFn~~Q~~hq~El~~l~rWwke~~l-~~l~faRdrlve~Yf~aaa~~fEPe~s~~Rl~~aK~~~l~tvi 530 (769)
+|++||||||+|||+||++||+||++++|||+++|| ++|||+|||++|||||++|++|||+||.+|++|||+++|++++
T Consensus 1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii 80 (328)
T d1n1ba2 1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI 80 (328)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999999999999999999 5799999999999999999999999999999999999999999
Q ss_pred hhhccCCCCHHHHHHHHHHhhhcCcchhccCCChhHHHHHHHHHhhHHHHHHHHhhhcccchhHHHHHHHH---------
Q 004193 531 DDFYDLGGSEEELLNLIDLLERWDVEEAKNCCSEQVEIIFSALRSTICEFGDKTLTWQGRNATSHIVETCL--------- 601 (769)
Q Consensus 531 DD~fD~~gt~eEl~~ft~aierWD~~~~~~l~peymk~~f~aL~~~~~ei~~~~~~~qgr~v~~yl~e~W~--------- 601 (769)
||+||+|||+||+++||+||+|||.+++++| |+|||+||.+|+++++|++.++.+.||+++.+|++++|.
T Consensus 81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~l-p~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l~~ayl~E 159 (328)
T d1n1ba2 81 DDIYDVYGTLDELELFTDTFKRWDTESITRL-PYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHE 159 (328)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHTCSSGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHhcccCCHHHHHHHHHHHHhcCCcccccC-cchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999998654
Q ss_pred ----hCCCCCChhhhhhhhccccchhhhHHHHhhhcCCCCc-hhhhcC-ccchhHHHHHHHHhhhccccccchhhhcCCC
Q 004193 602 ----RNKSVPTLDEYMENAYASFALGPIIFPAVYFVGPKLS-EEVVRD-PEFHNLYKLVSTCGRLLNDIQGFKRESKEGK 675 (769)
Q Consensus 602 ----~~g~vPt~eEYl~~a~vS~g~~~~~l~~~~~~G~~l~-~e~~~~-~~~~~L~~~~~~I~RL~NDi~S~k~E~~rG~ 675 (769)
++||+||+||||+||.+|+|+.++++++++++|..++ +++++| .++|+++++++.|+||+|||++|++|++||+
T Consensus 160 akW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~~E~~rg~ 239 (328)
T d1n1ba2 160 AKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGD 239 (328)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------C
T ss_pred HHHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHHHHHhcCC
Confidence 8899999999999999999988887777777887655 557898 6799999999999999999999999999999
Q ss_pred C-CeeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhhhhcccccccCCCCCChH-HH
Q 004193 676 L-NSVSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKEEGSIVPRACKDLIWKMSKVLHLFYMNTDGFSSNV-EM 753 (769)
Q Consensus 676 ~-n~V~cyMke~gg~vS~EeA~~~i~~~ie~~wkeln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dg~~~~~-~~ 753 (769)
+ |+|+|||+||| +|+|||+++++++|+++||+||++++++++ +|++|+++++|+||+++++|+++||||+|+ .|
T Consensus 240 ~~s~v~cymke~~--~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~--vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~~~~ 315 (328)
T d1n1ba2 240 VPKTIQCYMKETN--ASEEEAVEHVKFLIREAWKDMNTAIAAGYP--FPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKT 315 (328)
T ss_dssp CCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHTCCS--SCHHHHHHHHHHHHHHHHHTTTSCCC----CHH
T ss_pred cchHHHHHhccCC--CCHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHH
Confidence 9 99999999998 999999999999999999999999998765 999999999999999999999999999996 89
Q ss_pred HHHHHhhhccccc
Q 004193 754 VKAVSEVVYEPIS 766 (769)
Q Consensus 754 k~~I~~ll~epv~ 766 (769)
|+||++||++||.
T Consensus 316 k~~I~~ll~ePvs 328 (328)
T d1n1ba2 316 YEHIAGLLFEPYA 328 (328)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHhccCCC
Confidence 9999999999984
|
| >d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} | Back information, alignment and structure |
|---|
| >d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} | Back information, alignment and structure |
|---|
| >d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} | Back information, alignment and structure |
|---|
| >d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} | Back information, alignment and structure |
|---|
| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
| >d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} | Back information, alignment and structure |
|---|
| >d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} | Back information, alignment and structure |
|---|