Citrus Sinensis ID: 004203

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------77
Protein Sequence
MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Secondary Structure (PSIPRED)
cccEEEcccccccEEEEcccccccccccccccEEEEEccccccccEEccccccccEEEEcccccEEEEEEccEEEccccccEEEEEccccEEEccccccccccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEccccccccEEEEEccccccEEEEccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccEEEEEEccccccEEEEcccccEEccccccEEEcccccccccccEEEcccccEEEEEcccccccccccccccEEEEEccccEEEccccccccccEEEEcccccccEEEEEEEcccccEEEEEcccccccccccccccEEEEEEcccccccccEEEcccccEEcccccccEEEccccccccEEEccEEEEEEEEEEcEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEcccccccccEEEEccccEEEEEEEccccccccEEEEEEccccccccccccccccEEEEEcccEEEccEEEEEcccccEEEEEEEEEccccccccccccccccccEEEEEccccccEEEcccccEEEEEEccccccccEEEcccccccccEEEEEEccccccEEEEEEccccEEEEEEEccccccccccEEEEEEEEcccEEEEEcccccccEEEEEEEcccccccEEEEcccEEEEEEEcccccccccccccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccccccccccccccccccccccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEEEccccccccccEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEccccEEEEcccccEEEEccccccEEEEcccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEcccccEEEEcccccccEEEEccccccEEEcccccccccccccccccccEEcccccccEEccccccccccEccccccHHHcccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccHHHcEEEEccEEEEHHcccccccccHEEHHHHHEHcccccccccccccccccccccccccccccccccEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEEccccccHHHEEEEccccccEEEEEEEEEEEccHEHEEEccccccccEEEEEcccccccEEEccccccEEEEEEccccccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrrsiwaddanapsgsssqsrfppqaasnhrnsRLRNVFGLLaqrevaprtkhssKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAeslhhlrpkycplsppprstiaaafspdgktlasthgdhtvkiidcqtgsclkvlhghrrtpwvvrfhplnptiiasgslDHEVRLWnastaecigsrdfyrpiASIAFHASGELLAVASGHKLYIWRYnmreetssprivlrtrrslravhfhphaapllltaevndldssessltlatspgywrypppvicmagahssshpglaeevplitppflrpsfvrdderislqhtehdsgatrtqqslrssssvrlltystpsgqyelvlspiasnrsspmpdgtgtdsfVSEIdgalpqaaigavgtldglpeertnylpsfgdqtnwelpflqgwfvgqsqaaqcttgllngsdhenlaasgqienvlnssatpisvgqsrasgrsgsghqsthsqmmytpgsaegtafiniphsesarqpvTRFQAEVATSVAAAAATelpctvklriwphdiadpcallkgescrltiPHAVLcsemgahfspcGRYLVACVACvqpyletdpgfqsqgyqdatgagtsptrhpisaHQVIYELRIYSleeatfgtvlTSRAIRAAHCltsiqfsptsENLLLAYGRRHSSLLKSVLidgeitvptyTILEVYRVSDMELvrvlpsaedevnvacfhpsvggglvygtkegklRILQfdgsygmnhttscfmhenmqlvpaqalec
Flexible Loop (DISEMBL)
mrrsiwaddanapsgsssqsrfppqaasnhrnsRLRNVFGllaqrevaprtkhsskrllgetarkcsgsfsQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYnmreetssprivLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQhtehdsgatrtqqslrssssVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSvlidgeitvpTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Low Complexity Region (SEG)
MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGAtrtqqslrssssvrlltystPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPIsvgqsrasgrsgsghqsTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQaevatsvaaaaateLPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Disordered region (IsUnstruct)
*************************************VFGLL****************************SQIFEAGRDARRGLASWVEAESLHHLRPKYC*********************ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND*******LTLATSPGYWRYPPPVICMAGA***********VPLITPPFL**************************************************************************IDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLN************************************************************************RFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGF*******************ISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQ*********
Disordered Region (DISOPRED)
*RRSIW*DDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSR*************SQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQ*********TSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Disordered Region (DISEMBL)
******************************RNSRLRNVFGLLAQREV************GETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN*********TLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT*******************RLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATP**********************MMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQ**********RHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Disordered Region (DISPRO)
*******************S****QAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDH**LAASGQIENVLNSSATPISV***************************************SARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLE**********************HPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	768	2.2.26 [Sep-21-2011]
Q9C0C7	1298	Activating molecule in BE	no	no	0.200	0.118	0.425	1e-25
A2AH22	1300	Activating molecule in BE	no	no	0.200	0.118	0.425	1e-25
Q8YTC2	1258	Uncharacterized WD repeat	yes	no	0.171	0.104	0.382	6e-16
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.128	0.064	0.419	6e-13
Q00808	1356	Vegetative incompatibilit	no	no	0.140	0.079	0.351	6e-12
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.134	0.061	0.386	7e-11
P93107	606	Flagellar WD repeat-conta	N/A	no	0.132	0.168	0.380	1e-10
Q9USN3	777	Probable U3 small nucleol	yes	no	0.100	0.099	0.410	2e-10
Q5M786	334	WD repeat-containing prot	no	no	0.126	0.290	0.343	4e-10
Q498M4	334	WD repeat-containing prot	no	no	0.126	0.290	0.343	4e-10

>sp|Q9C0C7|AMRA1_HUMAN Activating molecule in BECN1-regulated autophagy protein 1 OS=Homo sapiens GN=AMBRA1 PE=1 SV=2

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 91/162 (56%), Gaps = 8/162 (4%)

Query: 99  KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
           K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct: 45  KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query: 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
           P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct: 105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query: 219 YNMREETSSPRIVLRTRRSL---RAVHFHPHAAPLLLTAEVN 257
           ++ RE    P  V++T   +   R V F P     LLTA VN
Sbjct: 165 WSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTAIVN 201

Regulates autophagy and development of the nervous system. Involved in autophagy in controlling protein turnover during neuronal development, and in regulating normal cell survival and proliferation.
Homo sapiens (taxid: 9606)

>sp|A2AH22|AMRA1_MOUSE Activating molecule in BECN1-regulated autophagy protein 1 OS=Mus musculus GN=Ambra1 PE=1 SV=1

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 91/162 (56%), Gaps = 8/162 (4%)

Query: 99  KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
           K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct: 45  KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query: 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
           P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct: 105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query: 219 YNMREETSSPRIVLRTRRSL---RAVHFHPHAAPLLLTAEVN 257
           ++ RE    P  V++T   +   R V F P     LLTA VN
Sbjct: 165 WSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTAIVN 201

Regulates autophagy and development of the nervous system. Involved in autophagy in controlling protein turnover during neuronal development, and in regulating normal cell survival and proliferation.

Mus musculus (taxid: 10090)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 86.7 bits (213), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 9/141 (6%)

Query: 89  EAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E   L  +R   C   L+       + AF PDG+TLAS  GD T+K+ D Q G+CL+ L 
Sbjct: 706 ENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLT 765

Query: 147 GHRRTPWV--VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASG 203
           GH  T WV  V F P   T +AS + DH ++LW+ S  +C+ + +     + S+AF A G
Sbjct: 766 GH--TDWVRCVAFSPDGNT-LASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADG 822

Query: 204 ELLAVASGHK-LYIWRYNMRE 223
           + LA  SG + + IW Y+  E
Sbjct: 823 QTLASGSGDRTIKIWNYHTGE 843

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 77.0 bits (188), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 112  AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV--VRFHPLNPTIIASGS 169
            A AFSPDG TLAS  GD TV++ D  +  CL +L GH  T WV  V F+P + + +ASGS
Sbjct: 1163 AVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGH--TSWVNSVVFNP-DGSTLASGS 1219

Query: 170  LDHEVRLWNASTAECIGSRDFYRP-IASIAFHASGELLAVASGHK 213
             D  VRLW  ++++C+ +   +   + S+ F+  G +LA  S  K
Sbjct: 1220 SDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDK 1264

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 3/111 (2%)

Query: 109  STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
            S ++ AFSPDG+ +AS  GD T+KI D  +G+C + L GH  + W V F P +   +ASG
Sbjct: 969  SVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSP-DGQRVASG 1027

Query: 169  SLDHEVRLWNASTAECIGSRDFYRP-IASIAFHASGELLAVAS-GHKLYIW 217
            S D  +++W+ ++  C  + + +   + S+ F   G+ +A  S  H + IW
Sbjct: 1028 SDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIW 1078

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 70.1 bits (170), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 3/106 (2%)

Query: 115  FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
            FSPDGK LAS   DH++K+ D  +G  L  L GH      VRF P   T IA+GS D  V
Sbjct: 1163 FSPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT-IAAGSEDKTV 1221

Query: 175  RLWNASTAECIGSRDFYRP-IASIAFHASGELLAVASGHK-LYIWR 218
            +LW+    + + + + ++  + S++F   G+ LA AS  K + +WR
Sbjct: 1222 KLWHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWR 1267

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P93107|PF20_CHLRE Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
           F P G  LAS  GD  VKI D +   C+     H++  W VRFH L   ++ASGSLDH V
Sbjct: 376 FHPAGTCLASGGGDSAVKIWDFEKQRCVTTFTDHKQAIWSVRFHHLGE-VVASGSLDHTV 434

Query: 175 RLWNASTAEC-IGSRDFYRPIASIAFHASGELLAVASGHK-LYIW 217
           RLW+    +C +  R     +  +A+      LA AS  K + +W
Sbjct: 435 RLWDLPAGKCRMALRGHVDSVNDLAWQPFSSSLATASSDKTVSVW 479

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp13 PE=3 SV=3

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS 167
           R   A   S DG+ +AS   D T+K+ D  TG  + VL GHRR  W   F+P +   +AS
Sbjct: 466 RDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPFSRQ-LAS 524

Query: 168 GSLDHEVRLWNASTAECI 185
           GS D  +R+WN  T +C+
Sbjct: 525 GSGDRTIRIWNVDTQQCV 542

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
            A+S D   L S   D T+KI D  +G CLK L GH    +   F+P    +I SGS D 
Sbjct: 93  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 151

Query: 173 EVRLWNASTAECIGSRDFY-RPIASIAFHASGELLAVAS 210
            VR+W+  T +C+ +   +  P++++ F+  G L+  +S
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Xenopus tropicalis (taxid: 8364)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
            A+S D   L S   D T+KI D  +G CLK L GH    +   F+P    +I SGS D 
Sbjct: 93  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 151

Query: 173 EVRLWNASTAECIGSRDFY-RPIASIAFHASGELLAVAS 210
            VR+W+  T +C+ +   +  P++++ F+  G L+  +S
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	768
296088263	773	unnamed protein product [Vitis vinifera]	0.996	0.989	0.708	0.0
359494728	802	PREDICTED: uncharacterized protein LOC10	0.949	0.908	0.725	0.0
449458880	775	PREDICTED: uncharacterized protein LOC10	0.966	0.957	0.668	0.0
255554314	690	nucleotide binding protein, putative [Ri	0.889	0.989	0.657	0.0
359480074	809	PREDICTED: uncharacterized protein LOC10	0.936	0.888	0.594	0.0
224132280	784	predicted protein [Populus trichocarpa]	0.934	0.915	0.586	0.0
297744244	756	unnamed protein product [Vitis vinifera]	0.858	0.871	0.617	0.0
224065515	703	predicted protein [Populus trichocarpa]	0.873	0.954	0.612	0.0
255585908	806	nucleotide binding protein, putative [Ri	0.923	0.879	0.585	0.0
356505084	809	PREDICTED: uncharacterized protein LOC10	0.927	0.880	0.562	0.0

>gi|296088263|emb|CBI35771.3| unnamed protein product [Vitis vinifera]

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/776 (70%), Positives = 621/776 (80%), Gaps = 11/776 (1%)

Query: 1   MRRSIWADDANAPSGSSS--QSRFPPQAASNHRNSRLR--NVFGLLAQREVAPRTKHSSK 56
           MR S W DD +    S+S  Q+R P    S+H NSR    NV+ LLA+REVAPRTKHS K
Sbjct: 1   MRSSFWVDDGSVNVTSTSSSQTRIPQAVPSHHPNSRHSGSNVYRLLARREVAPRTKHSLK 60

Query: 57  RLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFS 116
           RL G+ ++    S     EA R+AR GL SWVEAESL HL  KYCPL PPPRSTIAAAFS
Sbjct: 61  RLWGDASKWHHNSIGPRCEAARNARCGLISWVEAESLRHLSAKYCPLLPPPRSTIAAAFS 120

Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PDGKTLASTHGDHTVKIIDCQ GSCLKVL GHRRTPWVVRFHPL P I+ASGSLDHEVRL
Sbjct: 121 PDGKTLASTHGDHTVKIIDCQNGSCLKVLSGHRRTPWVVRFHPLYPEILASGSLDHEVRL 180

Query: 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRR 236
           W+ASTAECIGSRDFYRPIASIAFHA GELLAVASGHKLYIW YN R ETSSP IVL+TRR
Sbjct: 181 WDASTAECIGSRDFYRPIASIAFHAQGELLAVASGHKLYIWHYNRRGETSSPTIVLKTRR 240

Query: 237 SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLA 296
           SLRAVHFHPHAAP LLTAEVNDLDSS+SS+TLATSPGY RYPPP + +A AHSS    LA
Sbjct: 241 SLRAVHFHPHAAPFLLTAEVNDLDSSDSSMTLATSPGYLRYPPPTVYLADAHSSDRSSLA 300

Query: 297 EEVPLITPPF-LRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYE 355
           +E+PL++ PF + PSF RDD RISLQHT+  +G +  QQ +  S+SVRLLTYSTPSGQYE
Sbjct: 301 DELPLMSLPFFIWPSFARDDGRISLQHTDGVAGPSIAQQRVDHSTSVRLLTYSTPSGQYE 360

Query: 356 LVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQT 415
           L+LSP+  + SSPMP+ TGT+SF+ E++ ++PQ A+ A+ T +  PEER+N    FGD +
Sbjct: 361 LLLSPMEPSSSSPMPEETGTNSFLREMENSVPQPAMDAMDTTEVQPEERSNQFFPFGDPS 420

Query: 416 NWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENV--LNSSATPISVGQSRAS 473
            WELPFLQGW +GQSQA Q T   L+GS HEN ++ G+ E    + SS    S+ QSR +
Sbjct: 421 YWELPFLQGWLIGQSQAGQRTIRPLSGSGHENPSSFGETETPAPMVSSVMSTSISQSRVT 480

Query: 474 GRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV-TRFQAEVATSVAAAAATELP 532
           GRS S  +   S+     GSAEG AF+NI   ES  QPV +R Q+E+ATS+AAAAA ELP
Sbjct: 481 GRSSS--RHRSSRSRAATGSAEG-AFLNIGQDESGLQPVVSRIQSELATSLAAAAAAELP 537

Query: 533 CTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLE 592
           CTVKLRIWPHDI DPCA L  E CRLTIPHAVLCSEMGAHFSPCGR+L ACVAC+ P+LE
Sbjct: 538 CTVKLRIWPHDIKDPCASLDAERCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHLE 597

Query: 593 TDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLT 652
            DPG Q Q +   TGA TSPTRHPISAHQV+YELRIYSLEEATFG VL SRAIRAAHCLT
Sbjct: 598 ADPGSQGQMHHGVTGAATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLT 657

Query: 653 SIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDE 712
           SIQFSPTSE+LLLAYGRRH+SLLKS++IDGE TVP YTILEVYRVSDMELVRVLPSAEDE
Sbjct: 658 SIQFSPTSEHLLLAYGRRHNSLLKSIVIDGETTVPIYTILEVYRVSDMELVRVLPSAEDE 717

Query: 713 VNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC 768
           VNVACFHPSVGGGLVYGTKEGKLRILQ+D S+GMN+T+SCF+ ENM  VP  ALEC
Sbjct: 718 VNVACFHPSVGGGLVYGTKEGKLRILQYDSSHGMNYTSSCFLDENMLEVPTYALEC 773

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494728|ref|XP_002282542.2| PREDICTED: uncharacterized protein LOC100263178 [Vitis vinifera]

 Score = 1019 bits (2635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/736 (72%), Positives = 601/736 (81%), Gaps = 7/736 (0%)

Query: 37  NVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHL 96
           NV+ LLA+REVAPRTKHS KRL G+ ++    S     EA R+AR GL SWVEAESL HL
Sbjct: 70  NVYRLLARREVAPRTKHSLKRLWGDASKWHHNSIGPRCEAARNARCGLISWVEAESLRHL 129

Query: 97  RPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156
             KYCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ GSCLKVL GHRRTPWVVR
Sbjct: 130 SAKYCPLLPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQNGSCLKVLSGHRRTPWVVR 189

Query: 157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI 216
           FHPL P I+ASGSLDHEVRLW+ASTAECIGSRDFYRPIASIAFHA GELLAVASGHKLYI
Sbjct: 190 FHPLYPEILASGSLDHEVRLWDASTAECIGSRDFYRPIASIAFHAQGELLAVASGHKLYI 249

Query: 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWR 276
           W YN R ETSSP IVL+TRRSLRAVHFHPHAAP LLTAEVNDLDSS+SS+TLATSPGY R
Sbjct: 250 WHYNRRGETSSPTIVLKTRRSLRAVHFHPHAAPFLLTAEVNDLDSSDSSMTLATSPGYLR 309

Query: 277 YPPPVICMAGAHSSSHPGLAEEVPLITPPF-LRPSFVRDDERISLQHTEHDSGATRTQQS 335
           YPPP + +A AHSS    LA+E+PL++ PF + PSF RDD RISLQHT+  +G +  QQ 
Sbjct: 310 YPPPTVYLADAHSSDRSSLADELPLMSLPFFIWPSFARDDGRISLQHTDGVAGPSIAQQR 369

Query: 336 LRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVG 395
           +  S+SVRLLTYSTPSGQYEL+LSP+  + SSPMP+ TGT+SF+ E++ ++PQ A+ A+ 
Sbjct: 370 VDHSTSVRLLTYSTPSGQYELLLSPMEPSSSSPMPEETGTNSFLREMENSVPQPAMDAMD 429

Query: 396 TLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIE 455
           T +  PEER+N    FGD + WELPFLQGW +GQSQA Q T   L+GS HEN ++ G+ E
Sbjct: 430 TTEVQPEERSNQFFPFGDPSYWELPFLQGWLIGQSQAGQRTIRPLSGSGHENPSSFGETE 489

Query: 456 NV--LNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV- 512
               + SS    S+ QSR +GRS S  +   S+     GSAEG AF+NI   ES  QPV 
Sbjct: 490 TPAPMVSSVMSTSISQSRVTGRSSS--RHRSSRSRAATGSAEG-AFLNIGQDESGLQPVV 546

Query: 513 TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAH 572
           +R Q+E+ATS+AAAAA ELPCTVKLRIWPHDI DPCA L  E CRLTIPHAVLCSEMGAH
Sbjct: 547 SRIQSELATSLAAAAAAELPCTVKLRIWPHDIKDPCASLDAERCRLTIPHAVLCSEMGAH 606

Query: 573 FSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLE 632
           FSPCGR+L ACVAC+ P+LE DPG Q Q +   TGA TSPTRHPISAHQV+YELRIYSLE
Sbjct: 607 FSPCGRFLAACVACMLPHLEADPGSQGQMHHGVTGAATSPTRHPISAHQVMYELRIYSLE 666

Query: 633 EATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTIL 692
           EATFG VL SRAIRAAHCLTSIQFSPTSE+LLLAYGRRH+SLLKS++IDGE TVP YTIL
Sbjct: 667 EATFGLVLASRAIRAAHCLTSIQFSPTSEHLLLAYGRRHNSLLKSIVIDGETTVPIYTIL 726

Query: 693 EVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSC 752
           EVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQ+D S+GMN+T+SC
Sbjct: 727 EVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQYDSSHGMNYTSSC 786

Query: 753 FMHENMQLVPAQALEC 768
           F+ ENM  VP  ALEC
Sbjct: 787 FLDENMLEVPTYALEC 802

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458880|ref|XP_004147174.1| PREDICTED: uncharacterized protein LOC101210946 [Cucumis sativus] gi|449509118|ref|XP_004163498.1| PREDICTED: uncharacterized protein LOC101228862 [Cucumis sativus]

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/751 (66%), Positives = 577/751 (76%), Gaps = 9/751 (1%)

Query: 23  PPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARR 82
           PP     +R  R+ NVF LLAQREV+P+TK +S+R  G++  +   S     EA RDA+R
Sbjct: 29  PPLPYPTNRQ-RVSNVFQLLAQREVSPQTKRASRRFWGDSHDRQCDSVGPRCEAARDAKR 87

Query: 83  GLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL 142
           GL SWVEAESL HL  KYCPL PPPRSTIAAAFSPDG+TLASTHGDHTVKIIDCQTG+CL
Sbjct: 88  GLISWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGTCL 147

Query: 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHAS 202
           KVL GHRRTPWVVRFHPL P I+ASGSLD++VRLW+A+TAECIGSRDFYRPIASIAFHA 
Sbjct: 148 KVLSGHRRTPWVVRFHPLYPEILASGSLDYDVRLWDANTAECIGSRDFYRPIASIAFHAQ 207

Query: 203 GELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS 262
           GELLAVASGHKLYIW YN R ET SP IVLRTRRSLRAVHFHPHAA  LLTAEVNDLD+S
Sbjct: 208 GELLAVASGHKLYIWHYNKRGETPSPTIVLRTRRSLRAVHFHPHAAQFLLTAEVNDLDTS 267

Query: 263 ESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQ 321
           ES++TLATSPGY +YPPP +  A AHSS    L + +PL++ P L  PSF +++ R+S+Q
Sbjct: 268 ESAITLATSPGYVQYPPPTVYFADAHSSDRSSLMDGLPLMSFPLLIWPSFSKENRRMSMQ 327

Query: 322 HTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSE 381
            TE D GA R Q+ +  S+SVRLLTYSTPSGQYELVLSPI  N SSP+P+ TGT+ + SE
Sbjct: 328 RTEGDPGAGRLQR-VDPSASVRLLTYSTPSGQYELVLSPIEPNSSSPVPEETGTNHYSSE 386

Query: 382 IDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLN 441
           ++  + + A  A   ++   E R N    F D   WELPFLQGW +GQSQA+Q      +
Sbjct: 387 METEVSETAGDASENMEVQTEVRNNQNFPFNDP--WELPFLQGWLIGQSQASQHALRPHS 444

Query: 442 GSDHENLAASGQIENVLN--SSATPISVGQSRASGRSGSGHQSTHSQM-MYTPGSAEGTA 498
               EN +A   I  +    +S  P S  QSR   RS S H+S  S++ +   GS EG +
Sbjct: 445 DDVRENSSAPSDIGGIHAPLTSLIPTSASQSRVGRRSSSRHRSMRSRVPVPVSGSDEGGS 504

Query: 499 FINIPHSESARQP-VTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCR 557
             N    ES  QP V+R Q+E+A S+AA AA ELPCTVKLRIW HD+ +PCA L  E CR
Sbjct: 505 MSNTIPDESDPQPIVSRIQSELAASLAAVAAAELPCTVKLRIWSHDVKNPCAPLDDERCR 564

Query: 558 LTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPI 617
           L IPHAVLCSEMGAHFSPCGR+L ACVAC+ P++E DPGFQS    DATGA TSPTRHPI
Sbjct: 565 LIIPHAVLCSEMGAHFSPCGRFLAACVACMLPHMEADPGFQSHANSDATGAATSPTRHPI 624

Query: 618 SAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKS 677
           SA QV+YELRIYSLEEATFG VL SRAIRAAHCLTSIQFSPTSE+LLLAYGRRHSSLLKS
Sbjct: 625 SAQQVMYELRIYSLEEATFGVVLASRAIRAAHCLTSIQFSPTSEHLLLAYGRRHSSLLKS 684

Query: 678 VLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRI 737
           V++DGE TVP YTILEVYRVS+MELVRVLPSAEDEVNVACFHPSVGGG+VYGTKEGKLRI
Sbjct: 685 VVVDGETTVPIYTILEVYRVSNMELVRVLPSAEDEVNVACFHPSVGGGVVYGTKEGKLRI 744

Query: 738 LQFDGSYGMNHTTSCFMHENMQLVPAQALEC 768
           LQ+D S  +NH+T  F+ ENM  VP  ALEC
Sbjct: 745 LQYDSSQAINHSTYGFLDENMLEVPTYALEC 775

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554314|ref|XP_002518197.1| nucleotide binding protein, putative [Ricinus communis] gi|223542793|gb|EEF44330.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/695 (65%), Positives = 528/695 (75%), Gaps = 12/695 (1%)

Query: 1   MRRSIWADDANAPSGSSSQSRFPPQAASNHR-NSRLRNVFGLLAQREVAPRTKHSSKRLL 59
           MR S WADDAN PS S+S    PP ++  H  N +++NV+GLLAQREV PR KH+SK+L 
Sbjct: 1   MRGSFWADDANTPSTSNSN---PPISSRRHSGNYKIKNVYGLLAQREVCPRAKHASKKLW 57

Query: 60  GETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDG 119
            ++  +         ++ +DARRGL SWVEAESL HL  KYCPL PPPRSTIAAAFS DG
Sbjct: 58  KDSTDQRLDP-----QSAKDARRGLISWVEAESLQHLSAKYCPLLPPPRSTIAAAFSSDG 112

Query: 120 KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179
           KTLASTHGDHTVKIIDCQTG CLKVL GHRRTPWVVRFHPL P I+ASGSLDHEVRLWNA
Sbjct: 113 KTLASTHGDHTVKIIDCQTGKCLKVLSGHRRTPWVVRFHPLCPEILASGSLDHEVRLWNA 172

Query: 180 STAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLR 239
            T ECIGS +FYRPIASIAFHA GELLAVASGHKLYIW+YN R ETSSP  VLRTRRSLR
Sbjct: 173 KTTECIGSHEFYRPIASIAFHAHGELLAVASGHKLYIWQYNKRGETSSPPHVLRTRRSLR 232

Query: 240 AVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEV 299
           AVHFHPH APLLLTAEVNDLDSSESS+TLATSPGY  YPPP + +A  HS     L +E+
Sbjct: 233 AVHFHPHGAPLLLTAEVNDLDSSESSMTLATSPGYLCYPPPTVYLADTHSGGGLRLGDEL 292

Query: 300 PLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS 359
           PL++ PFL  SF R   RI +Q  + D G++R QQ L   +SVRLLTYSTPSGQYEL+LS
Sbjct: 293 PLMSLPFLI-SFARGG-RIPVQQIDRDVGSSRGQQRLDHPTSVRLLTYSTPSGQYELLLS 350

Query: 360 PIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWEL 419
           PI  N SSP+P+ T  DSF+ ++D   PQ  +    T +    ER N++  FGDQ +WE+
Sbjct: 351 PIEPNSSSPVPEETRPDSFMGDMDNETPQFVMDTAETAEVQSVERNNHISPFGDQLHWEV 410

Query: 420 PFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSG 479
           PFL GW VGQSQA + T+   NG  +ENL A G+IEN ++S   P ++GQSR SGRSG  
Sbjct: 411 PFLHGWLVGQSQAGRRTSASPNGLANENLTAYGEIENRVSSPVIPPNIGQSRGSGRSGPR 470

Query: 480 HQSTHSQMMYTPGSAEGTAFINIPHSESARQPV-TRFQAEVATSVAAAAATELPCTVKLR 538
           ++S+  Q +   GS E TA   + H+E+   P  +R ++E+ATS+AAAAA ELPCTVKLR
Sbjct: 471 YRSSQPQTIPVTGSGESTASGYMVHNENDALPASSRIRSELATSLAAAAAAELPCTVKLR 530

Query: 539 IWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQ 598
           IWP++I DP   L  E CRLTIPHAVLCSEMGAHFSPCGR+L AC+ACV P+LE DPG Q
Sbjct: 531 IWPYNIKDPFTPLDTERCRLTIPHAVLCSEMGAHFSPCGRFLAACIACVLPHLEADPGLQ 590

Query: 599 SQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSP 658
            Q      GA TSPTRHPISAHQV+YELRIYSLEE TFG VL SRAIRAAHCLTSIQFSP
Sbjct: 591 GQVLHHNAGAATSPTRHPISAHQVMYELRIYSLEETTFGLVLASRAIRAAHCLTSIQFSP 650

Query: 659 TSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILE 693
           TSE+LLLAYGRRH SLL+SV+ID E TVP YTILE
Sbjct: 651 TSEHLLLAYGRRHGSLLRSVVIDREATVPIYTILE 685

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480074|ref|XP_002268829.2| PREDICTED: uncharacterized protein LOC100246400 [Vitis vinifera]

 Score =  860 bits (2221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/784 (59%), Positives = 554/784 (70%), Gaps = 65/784 (8%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSF-SQIFEAGRDARRGLASWVEAESLH 94
           RNV  LLAQRE+ PR+K   KRL G ++ + + SF     EA RDARRGL SWVEA+SL 
Sbjct: 11  RNVLQLLAQREICPRSKQFPKRLWGGSSEQNAESFFGPKSEAARDARRGLISWVEADSLQ 70

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154
           HL  +YCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC TGSCLKVL GHRRTPWV
Sbjct: 71  HLSARYCPLMPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCHTGSCLKVLTGHRRTPWV 130

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKL 214
           VRFHP++P I+ASGSLDHEVR+W+A+TAECIGSRDFYRPIASIAFHA GELLAVASGHKL
Sbjct: 131 VRFHPVHPEILASGSLDHEVRIWDANTAECIGSRDFYRPIASIAFHAKGELLAVASGHKL 190

Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGY 274
           ++W Y+ R ETSSP I+L+TRRSLRAVHFHPH AP+LLTAEVNDLDSS+SS+T ATSPGY
Sbjct: 191 FVWHYSRRGETSSPTIILKTRRSLRAVHFHPHGAPVLLTAEVNDLDSSDSSMTRATSPGY 250

Query: 275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPF-LRPSFVRDDERISLQHTEHDSGATRTQ 333
             YPPP + +A  HSS    LA E+ L + PF   PSF RDD RI L HT+  +G+TR Q
Sbjct: 251 LHYPPPAVFLANIHSSDRLKLASELHLASLPFSFIPSFARDDSRIDLYHTDRPTGSTRVQ 310

Query: 334 QSLRSSSSVRLLTYSTPSGQYELVL-----SPIASNRSSPMPDGTGTDSFVSEIDGALPQ 388
             + SS SV+    +  +GQY+ ++     SP+  + S+P  +GT  +   + ++  +P 
Sbjct: 311 --MGSSGSVQFQADANAAGQYDYMVFPMETSPVLPSCSNPSTEGTQINCVPNGMENGIPD 368

Query: 389 AAIGAVGTLDGLPEERT--------------------------------------NYLPS 410
             + A+ + +  P E+                                        +LP 
Sbjct: 369 PKMDAMDSTEMQPVEQNQHRSSANLDTFSGANSASRGVPGHISSLPESIEFGHLHQFLPC 428

Query: 411 FGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHE----NLA----------ASGQIEN 456
            G +  WELPFLQGW +GQSQA       LNG+ HE    NL           ++  IE 
Sbjct: 429 RGPKY-WELPFLQGWLMGQSQAGVSPMLSLNGASHEHSSQNLGMGSAILNPDLSTSNIEV 487

Query: 457 VLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV-TRF 515
            + S A   S+     +GRSG   + + S ++    S E  A INI H  S   P+ +R 
Sbjct: 488 PVISPAMAGSINLPGVAGRSGQQQRFSRSHLISVSESVEQAASINIAHEGSDTPPIMSRI 547

Query: 516 QAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSP 575
           Q+E+A S+AAAAA ELPCTVKLRIW HD+ +P A+L  E C L IPHAVLCSEMGAH SP
Sbjct: 548 QSELAASLAAAAAAELPCTVKLRIWSHDLKNPSAVLNAEKCLLIIPHAVLCSEMGAHLSP 607

Query: 576 CGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEAT 635
           CGR+L ACVACV P+LE DPG Q+Q  QDA GA TSPTRHP+SAH V+YELRIYSLEEAT
Sbjct: 608 CGRFLAACVACVLPHLEADPGLQTQ-VQDAIGASTSPTRHPVSAHHVMYELRIYSLEEAT 666

Query: 636 FGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVY 695
           FGTVL SRAIRAAHCLTSIQFSPTSE++LLAYGRRHSSLLKS++IDGE T+P YTILEVY
Sbjct: 667 FGTVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKSLVIDGETTLPIYTILEVY 726

Query: 696 RVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMN-HTTSCFM 754
           RVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+LQ+D S+GMN +  + F+
Sbjct: 727 RVSDMELVRVLPSAEDEVNVACFHPLPGGGLVYGTKEGKLRVLQYDVSHGMNSNGPNSFL 786

Query: 755 HENM 758
            EN+
Sbjct: 787 GENL 790

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132280|ref|XP_002321300.1| predicted protein [Populus trichocarpa] gi|222862073|gb|EEE99615.1| predicted protein [Populus trichocarpa]

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/791 (58%), Positives = 546/791 (69%), Gaps = 73/791 (9%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFS-QIFEAGRDARRGLASWVEAESLH 94
           RN   LL QRE+ PRTKH+ KR  GE ++    S S    E  RDA+RGL SW EAESL 
Sbjct: 1   RNALCLLVQREICPRTKHTPKRRWGEASQWNYNSSSVPKTEPARDAKRGLISWAEAESLR 60

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTH------GDHTVKIIDCQTGSCLKVLHGH 148
           HL  +YCPL PPPRSTIAAAFSPDGKTLAST       GDHTVKIIDCQTG CLKVL GH
Sbjct: 61  HLSAQYCPLVPPPRSTIAAAFSPDGKTLASTQQVLLLCGDHTVKIIDCQTGICLKVLMGH 120

Query: 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV 208
           RRTPWVVRFHPL+P I+ASGSLDHEVRLW+A+T+ECIGSRDFYRPIASIAFHA GELLAV
Sbjct: 121 RRTPWVVRFHPLHPEILASGSLDHEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLAV 180

Query: 209 ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTL 268
           ASGHKLYIW YN R E SSP IVL+TRRSLRAVHFHPH AP LLTAEVNDLDSS+SS+T 
Sbjct: 181 ASGHKLYIWHYNKRGEASSPTIVLKTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTR 240

Query: 269 ATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHDS 327
           ATSPGY RYPPP + +    S     LA E+PL++ PFL  PSF  DD RI     + + 
Sbjct: 241 ATSPGYLRYPPPAVFVTNGQSGDCVSLASELPLVSLPFLFVPSFSLDDSRI-----DANR 295

Query: 328 GATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPM-----PDGTGTDSFVSEI 382
             T +   + SS+S++L   +  + +Y  ++SP+ +  + P       +G   +SF S +
Sbjct: 296 LVTSSTMQVESSTSMQLQMDTNATDRYVPLVSPMETFPAVPSSSYTSAEGIVNNSFPSGM 355

Query: 383 DGALPQAAIGAVGT--------------------------LDGLP------EERTNY--- 407
            G +      A+ T                          +DG+P      ++ T++   
Sbjct: 356 GGGVSNTREDAMETDEMPPVGGNPQGKSAHLEMLGVGNSAMDGVPANTSIRQQSTDFGQL 415

Query: 408 ---LPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLA------------ASG 452
              LPS  D T WELPFLQGW +GQSQA   +T  L+    E  A            ++ 
Sbjct: 416 QQILPS-RDSTWWELPFLQGWLMGQSQAGGPSTVPLSSGSRERSAQYIGPSSLTSYLSTQ 474

Query: 453 QIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV 512
            +E  + S A P S   S  SGRSGS  + + S+  + P S E  A IN+ H  S  QP+
Sbjct: 475 NVEAAVASLAMPGSTSISGVSGRSGSRPRISRSRF-FVPESRESMAPINMRHEGSDNQPI 533

Query: 513 -TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGA 571
             R Q+E+ATS+ AAAA ELPCTVKLR+W HDI  PCA L  + CRLTIPHAVLCSEMGA
Sbjct: 534 FNRIQSEIATSLEAAAAAELPCTVKLRVWSHDIKHPCAPLNADKCRLTIPHAVLCSEMGA 593

Query: 572 HFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSL 631
           HFSPCGRYL ACVAC+ P++E DPG Q+  +QDA GA TSPTRHPISAHQV+YELRIYSL
Sbjct: 594 HFSPCGRYLAACVACMLPHMEADPGLQTLVHQDA-GAATSPTRHPISAHQVVYELRIYSL 652

Query: 632 EEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTI 691
           EEATFG+VL SRAIRAAHCLTSIQFSP SE++LLAYGRRH SLLKS++IDGE T P YT+
Sbjct: 653 EEATFGSVLVSRAIRAAHCLTSIQFSPMSEHILLAYGRRHGSLLKSIVIDGETTTPIYTV 712

Query: 692 LEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTT- 750
           LEVYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+L++DG +G+N T  
Sbjct: 713 LEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLKYDGVHGVNCTRP 772

Query: 751 SCFMHENMQLV 761
           + F  EN+  V
Sbjct: 773 NHFPEENLTEV 783

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744244|emb|CBI37214.3| unnamed protein product [Vitis vinifera]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/727 (61%), Positives = 520/727 (71%), Gaps = 68/727 (9%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSF-SQIFEAGRDARRGLASWVEAESLH 94
           RNV  LLAQRE+ PR+K   KRL G ++ + + SF     EA RDARRGL SWVEA+SL 
Sbjct: 29  RNVLQLLAQREICPRSKQFPKRLWGGSSEQNAESFFGPKSEAARDARRGLISWVEADSLQ 88

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154
           HL  +YCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC TGSCLKVL GHRRTPWV
Sbjct: 89  HLSARYCPLMPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCHTGSCLKVLTGHRRTPWV 148

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKL 214
           VRFHP++P I+ASGSLDHEVR+W+A+TAECIGSRDFYRPIASIAFHA GELLAVASGHKL
Sbjct: 149 VRFHPVHPEILASGSLDHEVRIWDANTAECIGSRDFYRPIASIAFHAKGELLAVASGHKL 208

Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGY 274
           ++W Y+ R ETSSP I+L+TRRSLRAVHFHPH AP+LLTAEVNDLDSS+SS+T ATSPGY
Sbjct: 209 FVWHYSRRGETSSPTIILKTRRSLRAVHFHPHGAPVLLTAEVNDLDSSDSSMTRATSPGY 268

Query: 275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPF-LRPSFVRDDERISLQHTEHDSGATRTQ 333
             YPPP + +A  HSS    LA E+ L + PF   PSF RDD RI L HT+  +G+TR Q
Sbjct: 269 LHYPPPAVFLANIHSSDRLKLASELHLASLPFSFIPSFARDDSRIDLYHTDRPTGSTRVQ 328

Query: 334 QSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGA 393
                                   +    S+RSS        D+F      + P+     
Sbjct: 329 ------------------------MGSSGSHRSS-----ANLDTFSGANSASRPKY---- 355

Query: 394 VGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQ 453
                                  WELPFLQGW +GQSQA       LNG+ HE+ +    
Sbjct: 356 -----------------------WELPFLQGWLMGQSQAGVSPMLSLNGASHEHSS---- 388

Query: 454 IENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV- 512
            +N+    A   S+     +GRSG   + + S ++    S E  A INI H  S   P+ 
Sbjct: 389 -QNL--GMAMAGSINLPGVAGRSGQQQRFSRSHLISVSESVEQAASINIAHEGSDTPPIM 445

Query: 513 TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAH 572
           +R Q+E+A S+AAAAA ELPCTVKLRIW HD+ +P A+L  E C L IPHAVLCSEMGAH
Sbjct: 446 SRIQSELAASLAAAAAAELPCTVKLRIWSHDLKNPSAVLNAEKCLLIIPHAVLCSEMGAH 505

Query: 573 FSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLE 632
            SPCGR+L ACVACV P+LE DPG Q+Q  QDA GA TSPTRHP+SAH V+YELRIYSLE
Sbjct: 506 LSPCGRFLAACVACVLPHLEADPGLQTQ-VQDAIGASTSPTRHPVSAHHVMYELRIYSLE 564

Query: 633 EATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTIL 692
           EATFGTVL SRAIRAAHCLTSIQFSPTSE++LLAYGRRHSSLLKS++IDGE T+P YTIL
Sbjct: 565 EATFGTVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKSLVIDGETTLPIYTIL 624

Query: 693 EVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMN-HTTS 751
           EVYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+LQ+D S+GMN +  +
Sbjct: 625 EVYRVSDMELVRVLPSAEDEVNVACFHPLPGGGLVYGTKEGKLRVLQYDVSHGMNSNGPN 684

Query: 752 CFMHENM 758
            F+ EN+
Sbjct: 685 SFLGENL 691

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065515|ref|XP_002301835.1| predicted protein [Populus trichocarpa] gi|222843561|gb|EEE81108.1| predicted protein [Populus trichocarpa]

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/736 (61%), Positives = 519/736 (70%), Gaps = 65/736 (8%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQ-IFEAGRDARRGLASWVEAESLH 94
           RN F LL QRE+ PRTKH+ KR  GE A   S S S    E  RDA+RGL SWVEAESL 
Sbjct: 2   RNAFCLLVQREICPRTKHTPKRRWGEDAHWNSNSSSSPKTEQARDAKRGLISWVEAESLR 61

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154
           HL  KYCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG+CLKVL GHRRTPWV
Sbjct: 62  HLSAKYCPLVPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGNCLKVLMGHRRTPWV 121

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKL 214
           VRFHPL+P I+ASGSLD+EVRLW+A+T+ECIGSRDFYRPIASIAFHA GELLAVASGHKL
Sbjct: 122 VRFHPLHPEILASGSLDYEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKL 181

Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGY 274
           YIW YN R E SSP IVLRTRRSLRAVHFHPH AP LLTAEVNDLDSS+SS+T ATSPGY
Sbjct: 182 YIWHYNKRGEASSPTIVLRTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTRATSPGY 241

Query: 275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLR-------PSFVRDDERISLQHTEHDS 327
            RYPPP + +A   S+    LA E+PL++            PS + +    S+ ++  D+
Sbjct: 242 PRYPPPAVFVANGQSNDRVSLASELPLVSYTSAEGIVSNAFPSGMGN----SVSNSREDA 297

Query: 328 GATRTQQSLRSS---SSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDG 384
             T   QS+  +   +SV L T+                        G G     S  DG
Sbjct: 298 METDEMQSVGGNPQGNSVNLETF------------------------GVGN----SATDG 329

Query: 385 ALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELP-FLQGWFVGQSQAAQCTTGLLNGS 443
                ++    T  G   +   +LPS  D T WELP FLQGW +GQSQA   +T   N  
Sbjct: 330 VPAHTSVRQQSTDFG---QLQQFLPSR-DSTRWELPPFLQGWLMGQSQAGVPSTLPHNSG 385

Query: 444 DHE------------NLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTP 491
            HE            +  ++  +E  + S A P S   S  SGRSGS H+ + S+    P
Sbjct: 386 GHELSAQYFGPSSLASYLSTQNVEAAVASLAMPGSTSLSGVSGRSGSRHRVSRSRFS-VP 444

Query: 492 GSAEGTAFINIPHSESARQPV-TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCAL 550
            S E  A IN+ H  +  QP+  R Q+E+ATS+AAAA  ELPCTVKLR+W HDI  PCA 
Sbjct: 445 ESGESVAPINMQHEGTDNQPLFNRIQSEIATSLAAAA--ELPCTVKLRVWSHDIEHPCAP 502

Query: 551 LKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGT 610
           L  + C LTIPHAVLCSEMGAHFSPCGRYL ACVAC+ P++E DPG Q+  +QD TG  T
Sbjct: 503 LNSDKCCLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPHMEADPGLQTLVHQD-TGTAT 561

Query: 611 SPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRR 670
           SPTRHPISAHQV+YELRIYSLEEATFG+VL SRAIRAAHCLTSIQFSPTSE++LLAYGRR
Sbjct: 562 SPTRHPISAHQVMYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRR 621

Query: 671 HSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGT 730
           H SLLKS++IDGE   P YT+LEVYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGT
Sbjct: 622 HVSLLKSIVIDGETKSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGT 681

Query: 731 KEGKLRILQFDGSYGM 746
           KEGKLR+L++DG++G+
Sbjct: 682 KEGKLRVLKYDGAHGV 697

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585908|ref|XP_002533627.1| nucleotide binding protein, putative [Ricinus communis] gi|223526485|gb|EEF28756.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/786 (58%), Positives = 536/786 (68%), Gaps = 77/786 (9%)

Query: 37  NVFGLLAQREVAPRTKHSSKRLLGETAR-KCSG--------SFSQIFEAGRDARRGLASW 87
           N   LL +RE+ P+TKH  KR  G+ +R K +G        S +   E  RDA+RGL SW
Sbjct: 27  NALCLLVRREICPKTKHVPKRRWGDASRWKSNGGDNNNAISSSAPKCEPARDAKRGLISW 86

Query: 88  VEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147
           VE ESL HL  KYCPL PPPRSTIAAAFSPDG+TLASTHGDHTVKIIDCQTG+CLKVL G
Sbjct: 87  VEEESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG 146

Query: 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA 207
           HRRTPWVVRFHPL+P I+ASGSLD+EVRLW+A+T+ECIGSRDFYRPIASIAFHA GELLA
Sbjct: 147 HRRTPWVVRFHPLHPEILASGSLDYEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLA 206

Query: 208 VASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLT 267
           VASGHKLY+W YN R E SSP IVL+TRRSLRAVHFHPHAAP LLTAEVNDLDSS+SS+T
Sbjct: 207 VASGHKLYVWHYNKRGEASSPAIVLKTRRSLRAVHFHPHAAPFLLTAEVNDLDSSDSSMT 266

Query: 268 LATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHD 326
            ATSPGY RYPPP + +A   SS    LA EVPL++ PFL  PSF  +D R      + +
Sbjct: 267 RATSPGYLRYPPPAVFVANVQSSDRVSLAAEVPLMSLPFLFMPSFSVNDTR-----PDAN 321

Query: 327 SGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPI-----ASNRSSPMPDG-------TG 374
             A+ +     SS S RL        +Y+ +LSP+      ++ S P  +G       TG
Sbjct: 322 RHASSSIMHGGSSGSRRLQAEVNAGEKYDRLLSPMETFPAVASSSHPGTEGSLNSLLPTG 381

Query: 375 TDSFVSEIDGAL------------------PQAAIG---AVGTLDGLPEERTNYLPSFG- 412
           + S    I  A+                  P+ + G   A+G + G    R   +  FG 
Sbjct: 382 SASVSDTIVDAMETDEMQPIRGILQGNYRDPETSRGGNSAMGGMSGNMSVRPRSI-EFGQ 440

Query: 413 --------DQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLA-----------ASGQ 453
                   D T WEL FLQGW +GQSQA   +T  LN   HE  A           +S  
Sbjct: 441 LHQLLPSRDPTWWELHFLQGWLMGQSQAGVPSTLPLNVGSHEYPAQYTASSSTSYLSSHN 500

Query: 454 IENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV- 512
           +E  + + A P S   S  SGR    H  +   +     S E    I   H  +  QP+ 
Sbjct: 501 MEAAMATLAMPASTSLSGVSGRFDLQHNVSRFHI-----SGESMPPIIRQHDSTDTQPLF 555

Query: 513 TRFQAEVATSVAAAAAT-ELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGA 571
            R Q+E+ATS+AAAAA  ELPCTVKLR+WPHDI  PCA L  E CRLTIPHAVLCSEMGA
Sbjct: 556 NRIQSEIATSLAAAAAAAELPCTVKLRVWPHDIKHPCAPLNAEKCRLTIPHAVLCSEMGA 615

Query: 572 HFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSL 631
           HFSPCGR+L ACVAC+ P +E DPG Q+   QD +GA TSPTRHPISAHQV+YELRIYSL
Sbjct: 616 HFSPCGRFLAACVACMLPNMEADPGLQTLVQQD-SGAATSPTRHPISAHQVMYELRIYSL 674

Query: 632 EEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTI 691
           EEATFG+VL SRAIRAAHCLTSIQFSPTSE++LLAYGRRH SLLKS++IDGE T P YT+
Sbjct: 675 EEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIIIDGETTSPVYTV 734

Query: 692 LEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTS 751
           LEVYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+L++DG++G N TT 
Sbjct: 735 LEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLKYDGAHGGNCTTP 794

Query: 752 CFMHEN 757
            +  E+
Sbjct: 795 NYCPED 800

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505084|ref|XP_003521322.1| PREDICTED: uncharacterized protein LOC100794246 [Glycine max]

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/779 (56%), Positives = 536/779 (68%), Gaps = 67/779 (8%)

Query: 38  VFGLLAQREVAPRTKHSSKRLLGE---TARKCSGSFSQ-IFEAGRDARRGLASWVEAESL 93
           VF LLA+RE++PR+++ +KR  GE    ++  S  +S    E  RDARRGL SWVEAESL
Sbjct: 30  VFNLLARREISPRSRYVAKRHWGEPGEASKSKSSPYSHPKNEVVRDARRGLLSWVEAESL 89

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
            HL  KYCPL PPPRSTIAAAFSPDGK LASTHGDHTVKIIDC+TGSCLKVL GHRRTPW
Sbjct: 90  RHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPW 149

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK 213
           VVRFHPL+P I+ASGSLD EVRLW+A+T+ECI S  FYRPIASIAFHA GE++AVASGHK
Sbjct: 150 VVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHK 209

Query: 214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPG 273
           LYIW +N + E SSP  VL+T+RSLRAVHFHPHAAP LLTAEVNDL+SS+SS+T ATS G
Sbjct: 210 LYIWFHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLESSDSSMTEATSLG 269

Query: 274 YWRYPPPVICMAGAHSSSHPGLAEEVPLITPPF-LRPSFVRDDERISLQHTEHDSGATRT 332
           Y +YPPP + +   H + H  L+ E+P ++ PF + P++  D+ R  LQH  HD G+   
Sbjct: 270 YLQYPPPAVFVTNIHPTEHISLSSELPYVSLPFYVMPAYTVDESRAELQHASHDVGSGSM 329

Query: 333 QQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTD-----SFVSEIDGALP 387
           Q  + S++ V+L    + +  YE  +SP+ +    P    TG +     +F + +   L 
Sbjct: 330 Q--IESAAMVQLHADPSAAAHYETTVSPMDTFSEMPSSSQTGAEYPAHTAFSNGMGIGLS 387

Query: 388 QAAIGAV-----------------------GTLDGLPEERTN--YLPSFG---------D 413
              +  +                       G L GL  +  N   L  FG         D
Sbjct: 388 NLTMDGMETDETRPAEGSQHGNLTNTYSLNGMLHGLSRQTANRGVLSEFGQFHQFFPSRD 447

Query: 414 QTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLA-------------ASGQIENVLNS 460
            + WE+PFL GW +GQSQ    +     G+  +NL+             ++  ++  + S
Sbjct: 448 PSGWEIPFLHGWIMGQSQVGVPSMLPHMGASRDNLSQHIGSSSIKASNPSTSNVDAAMPS 507

Query: 461 SATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGT--AFINIPHSESARQP-VTRFQA 517
           SA P S+    +S RSG  +  + S++   P S  G   A IN PH     Q  V+R Q+
Sbjct: 508 SAIPGSISIPGSSMRSGLRNHFSQSRV---PVSESGNLAASINAPHDGFDIQTIVSRIQS 564

Query: 518 EVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCG 577
           E+ATSVAA AA ELPCTVKLR+W HDI +PCA L  + CRLTIPHAVLCSEMGAHFSPCG
Sbjct: 565 ELATSVAATAA-ELPCTVKLRVWSHDIKNPCAPLNADRCRLTIPHAVLCSEMGAHFSPCG 623

Query: 578 RYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFG 637
           R+L ACVACV P++E DPG Q+  +QD  G  TSPTRHPISAHQV+YELRIYSLEEATFG
Sbjct: 624 RFLAACVACVLPHIEADPGLQTPVHQDP-GVATSPTRHPISAHQVMYELRIYSLEEATFG 682

Query: 638 TVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRV 697
           +VL SRAIRAAHCLTSIQFSPTSE++LLAYGRRH SLLKS++IDGE T+P YT+LEVY+V
Sbjct: 683 SVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYKV 742

Query: 698 SDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHE 756
           SDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+LQ+DG++ +N T   +  E
Sbjct: 743 SDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGTGPSYFPE 801

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	768
TAIR|locus:2020285	793	AT1G04140 "AT1G04140" [Arabido	0.524	0.508	0.523	1.7e-200
UNIPROTKB|E1BQ96	1301	AMBRA1 "Uncharacterized protei	0.213	0.126	0.409	7.4e-25
UNIPROTKB|Q9C0C7	1298	AMBRA1 "Activating molecule in	0.259	0.153	0.370	7.7e-24
MGI|MGI:2443564	1300	Ambra1 "autophagy/beclin 1 reg	0.259	0.153	0.370	7.7e-24
UNIPROTKB|F1MPW0	1297	F1MPW0 "Uncharacterized protei	0.204	0.121	0.421	8e-24
UNIPROTKB|F1SI99	1297	F1SI99 "Uncharacterized protei	0.204	0.121	0.421	9.9e-24
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.134	0.307	0.339	8.7e-10
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.134	0.334	0.349	1e-09
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.134	0.308	0.349	1.4e-09
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.134	0.308	0.349	1.4e-09

TAIR|locus:2020285 AT1G04140 "AT1G04140" [Arabidopsis thaliana (taxid:3702)]

 Score = 1014 (362.0 bits), Expect = 1.7e-200, Sum P(2) = 1.7e-200
 Identities = 215/411 (52%), Positives = 257/411 (62%)

Query:     1 MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLG 60
             M  SIW +D ++P  S   S  P   A+ HR  R R+VF LL QRE++P TK   ++  G
Sbjct:     1 MTESIWLNDQSSPR-SMIPSAKP--VANVHRQ-RCRSVFKLLVQREISPNTKFVPRKRWG 56

Query:    61 ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGK 120
             E+      S     E  R+    L SWVEAESL HL  KYCPL PPPRSTIAAAFS DG+
Sbjct:    57 ESRCDADSSCGTTSEPVREQGLNLISWVEAESLQHLSAKYCPLVPPPRSTIAAAFSSDGR 116

Query:   121 TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180
             TLASTHGDHTVKIIDC+TG CLK+L GHRRTPWVVRFHP +  I+ASGSLDHEVRLWNA 
Sbjct:   117 TLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAK 176

Query:   181 TAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRA 240
             T ECI + DFYRPIASIAFHA GELLAVASGHKL+IW YN   + S+P IVL+TRRSLRA
Sbjct:   177 TGECIRTHDFYRPIASIAFHAGGELLAVASGHKLHIWHYNKGGDDSAPAIVLKTRRSLRA 236

Query:   241 VHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVP 300
             VHFHPH  PLLLTAEV D+DSS+S++T +TSPGY RYPPP I      S S   LA E+P
Sbjct:   237 VHFHPHGVPLLLTAEVTDIDSSDSAMTRSTSPGYLRYPPPAIFFTNTQSGSRTSLAAELP 296

Query:   301 LITPPFLR-PSFVRDDERISLQHTEHDSGAXXXXXXXXXXXXXXXXXXXXPSGQYELVLS 359
             L+  P+L  PS+  DD RI                               PS    +  S
Sbjct:   297 LVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSVEHGSRTISPS-PLPMATS 355

Query:   360 PIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPS 410
                S  S  +PD + +++F ++        A+ A+   +  P  R N +PS
Sbjct:   356 ADLSG-SYHVPDNSASNTFATQAGARNSTTAVDAMDVDEAQPVGR-NRVPS 404

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

UNIPROTKB|E1BQ96 AMBRA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 7.4e-25, Sum P(3) = 7.4e-25
 Identities = 68/166 (40%), Positives = 93/166 (56%)

Query:    99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
             K   L   PRST   AFSPD   +ASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct:    45 KKVELPDSPRSTFLLAFSPDRTLMASTHVNHNIYITEVKTGKCVHSLVGHRRTPWCVTFH 104

Query:   159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
             P  P +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct:   105 PTIPGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query:   219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSES 264
             ++ RE  +  +      R +R V F P     LLTA VN  +  +S
Sbjct:   165 WSRREPFAVVKTASEMER-VRLVRFDP-LGHYLLTAIVNPSNQQQS 208

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

UNIPROTKB|Q9C0C7 AMBRA1 "Activating molecule in BECN1-regulated autophagy protein 1" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
 Identities = 79/213 (37%), Positives = 110/213 (51%)

Query:    46 EVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS 104
             +V P  K++ + L G E   +  G+   + E   D  R    W++ E       K   L 
Sbjct:     2 KVVPE-KNAVRILWGRERGARAMGAQRLLQELVEDKTR----WMKWEG------KRVELP 50

Query:   105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
               PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FHP    +
Sbjct:    51 DSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFHPTISGL 110

Query:   165 IASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREE 224
             IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W ++ RE 
Sbjct:   111 IASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWDWSRREP 170

Query:   225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
              +  +      R +R V F P     LLTA VN
Sbjct:   171 FAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0030154 "cell differentiation" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2443564 Ambra1 "autophagy/beclin 1 regulator 1" [Mus musculus (taxid:10090)]

 Score = 301 (111.0 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
 Identities = 79/213 (37%), Positives = 110/213 (51%)

Query:    46 EVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS 104
             +V P  K++ + L G E   +  G+   + E   D  R    W++ E       K   L 
Sbjct:     2 KVVPE-KNAVRILWGRERGTRAMGAQRLLQELVEDKTR----WMKWEG------KRVELP 50

Query:   105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
               PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FHP    +
Sbjct:    51 DSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFHPTISGL 110

Query:   165 IASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREE 224
             IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W ++ RE 
Sbjct:   111 IASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWDWSRREP 170

Query:   225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
              +  +      R +R V F P     LLTA VN
Sbjct:   171 FAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISA

GO:0006914 "autophagy" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0021915 "neural tube development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

UNIPROTKB|F1MPW0 F1MPW0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 298 (110.0 bits), Expect = 8.0e-24, Sum P(2) = 8.0e-24
 Identities = 67/159 (42%), Positives = 88/159 (55%)

Query:    99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
             K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct:    45 KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query:   159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
             P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+  +++ W 
Sbjct:   105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATASEIHFWD 164

Query:   219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
             ++ RE  +  +      R +R V F P     LLTA VN
Sbjct:   165 WSRREPFAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1SI99 F1SI99 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 9.9e-24, Sum P(2) = 9.9e-24
 Identities = 67/159 (42%), Positives = 89/159 (55%)

Query:    99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
             K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct:    45 KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query:   159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
             P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct:   105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query:   219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
             ++ RE  +  +      R +R V F P     LLTA VN
Sbjct:   165 WSRREPFAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 162 (62.1 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
 Identities = 36/106 (33%), Positives = 56/106 (52%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D K + S   D T+KI D ++G  +K L GH+   + V F+P +  +I SGS D  
Sbjct:    95 AWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQS-NLIVSGSFDEN 153

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS-GHKLYIW 217
             VR+W+ +T EC      +  P+  + F+  G L+   S    + IW
Sbjct:   154 VRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIW 199

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D   L S   D T+KI D  +G CLK L GH    +   F+P +  +I SGS D  
Sbjct:    68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDES 126

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKLY-IW 217
             VR+W+  T +C+ +   +  P++++ F+  G L+  +S   L  IW
Sbjct:   127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D   L S   D T+KI D  +G CLK L GH    +   F+P +  +I SGS D  
Sbjct:    94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDES 152

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKLY-IW 217
             VR+W+  T +C+ +   +  P++++ F+  G L+  +S   L  IW
Sbjct:   153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D   L S   D T+KI D  +G CLK L GH    +   F+P +  +I SGS D  
Sbjct:    94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDES 152

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKLY-IW 217
             VR+W+  T +C+ +   +  P++++ F+  G L+  +S   L  IW
Sbjct:   153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	768
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-06
smart00320	40	smart00320, WD40, WD40 repeats	5e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
           AFSPDG+ L+S+  D T+K+ D +TG CL  L GH      V F P + T +AS S D  
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGT 158

Query: 174 VRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIV 231
           ++LW+  T +C+ +       + S+AF   GE L  +S    + +W  +  +   + R  
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218

Query: 232 LRTRRSLRAVHFHPH 246
                 + +V F P 
Sbjct: 219 ---ENGVNSVAFSPD 230

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 85.5 bits (210), Expect = 2e-17
 Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 14/211 (6%)

Query: 66  CSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLAST 125
            S   + I  A       +  W  +     +R     L     S  + AFSPDGK LAS 
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT----LEGHSESVTSLAFSPDGKLLASG 173

Query: 126 HG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184
              D T+K+ D +TG  L  L GH      + F P    +IASGS D  +RLW+ ST + 
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 185 IGSRDFYRPIASI-AFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVH 242
           + S       + + +F   G LLA  S    + +W  ++R  +S  R +     S+ +V 
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW--DLRSSSSLLRTLSGHSSSVLSVA 291

Query: 243 FHPHAAPLLL-----TAEVNDLDSSESSLTL 268
           F P    L       T  + DL++ +   +L
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 24/159 (15%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
           AFSPDG  +AS+  D T+K+ D +TG C+  L GH      V F P    +++S S D  
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGT 200

Query: 174 VRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIV 231
           ++LW+ ST +C+G+ R     + S+AF   G LLA  S    + +W              
Sbjct: 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD------------- 247

Query: 232 LRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLAT 270
           LRT   ++ +  H        T  V  L  S     LA+
Sbjct: 248 LRTGECVQTLSGH--------TNSVTSLAWSPDGKRLAS 278

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 8/137 (5%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
             AFSPDGK LA+  GD T+K+ D +TG  L+ L GH      V         +ASGS D
Sbjct: 14  CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY-LASGSSD 72

Query: 172 HEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR 229
             +RLW+  T EC+ +       ++S+AF   G +L+ +S  K + +W      ET    
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW----DVETGKCL 128

Query: 230 IVLRT-RRSLRAVHFHP 245
             LR     + +V F P
Sbjct: 129 TTLRGHTDWVNSVAFSP 145

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 9/112 (8%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
           + AFSPDG+ L S+  D T+K+ D  TG CL  L GH      V F P +  ++ASGS D
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSED 240

Query: 172 HEVRLWNASTAECI----GSRDFYRPIASIAFHASGELLAVASG-HKLYIWR 218
             +R+W+  T EC+    G  +    + S+A+   G+ LA  S    + IW 
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTN---SVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 71.7 bits (174), Expect = 5e-13
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGS 169
           + AFSPDGK LAS   D TV++ D +TG  L  L   GH      + F P    +++ GS
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 170 LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSP 228
            D  +RLW+  T + + + + +  + S++F   G +++  S    + +W  +     S  
Sbjct: 349 DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST---GSLL 405

Query: 229 RIVLRTRRSLRAVHFHP 245
           R +      + ++ F P
Sbjct: 406 RNLDGHTSRVTSLDFSP 422

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
           + ++ +FSPDG+ ++S   D TV++ D  TGS L+ L GH      + F P +   +ASG
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASG 430

Query: 169 SLDHEVRLWNAST 181
           S D+ +RLW+  T
Sbjct: 431 SSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASI 197
             + L GH      V F P    ++A+GS D  +++W+  T E +  R       P+  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELL--RTLKGHTGPVRDV 57

Query: 198 AFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRS-LRAVHFHPHAAPLLLTA 254
           A  A G  LA  S    + +W     E        L    S + +V F P    +L ++
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVR----TLTGHTSYVSSVAFSPD-GRILSSS 111

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 7/147 (4%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTPW--VVRFHPLNPTIIASGS- 169
           AFSPDG+ L S   D T+K+ D   G   +K L G   +    +    P   +I+ + S 
Sbjct: 72  AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 170 LDHEVRLWNASTA-ECIGS-RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS 227
           LD  V+LW+ ST  + I +       + S+AF   G+LLA  S     I  +++R     
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKP 190

Query: 228 PRIVLRTRRSLRAVHFHPHAAPLLLTA 254
              +      + ++ F P    L+ + 
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASG 217

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 138 TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
           +G  LK L GH      V F P +   +ASGS D  ++LW+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
           G  L+ L GH      V F P +  ++ASGS D  VR+W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 122 LASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181
           +AS++ +  V++ D      +  +  H +  W + +   +PT++ASGS D  V+LW+ + 
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607

Query: 182 AECIGSRDFYRPIASIAFHA-SGELLAVASG-HKLYIWRYNMREETSSPRIVLRT 234
              IG+      I  + F + SG  LA  S  HK+Y   Y++R    +P++ L T
Sbjct: 608 GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYY--YDLR----NPKLPLCT 656

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	768
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.93
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.92
PTZ00421	493	coronin; Provisional	99.92
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.92
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.91
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.91
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.91
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.9
PTZ00420	568	coronin; Provisional	99.89
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.89
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.89
KOG0266	456	consensus WD40 repeat-containing protein [General	99.89
KOG0286	343	consensus G-protein beta subunit [General function	99.87
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.86
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.86
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.85
KOG0286	343	consensus G-protein beta subunit [General function	99.85
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.85
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.85
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.85
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.84
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.84
KOG0266	456	consensus WD40 repeat-containing protein [General	99.84
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.84
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.84
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.83
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.82
PTZ00421	493	coronin; Provisional	99.81
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.81
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.8
PLN00181	793	protein SPA1-RELATED; Provisional	99.8
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.79
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.79
KOG0645	312	consensus WD40 repeat protein [General function pr	99.79
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.79
PLN00181	793	protein SPA1-RELATED; Provisional	99.78
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.78
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.78
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.78
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.77
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.77
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.77
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.77
KOG0645	312	consensus WD40 repeat protein [General function pr	99.76
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.76
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.76
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.75
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.75
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.75
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.75
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.74
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.73
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.73
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.73
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.73
PTZ00420	568	coronin; Provisional	99.72
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.72
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.72
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.72
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.71
KOG0296	399	consensus Angio-associated migratory cell protein	99.71
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.71
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.7
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.7
KOG0289	506	consensus mRNA splicing factor [General function p	99.69
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.69
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.69
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.69
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.68
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.68
KOG0639	705	consensus Transducin-like enhancer of split protei	99.68
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.68
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.68
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.68
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.67
KOG0289	506	consensus mRNA splicing factor [General function p	99.66
KOG0643	327	consensus Translation initiation factor 3, subunit	99.66
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.66
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.66
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.66
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.65
KOG0643	327	consensus Translation initiation factor 3, subunit	99.64
KOG0267	825	consensus Microtubule severing protein katanin p80	99.64
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.64
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.64
KOG0267	825	consensus Microtubule severing protein katanin p80	99.64
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.64
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.63
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.63
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.63
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.62
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.62
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.61
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.61
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.61
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.6
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.6
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.6
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.59
KOG0296	399	consensus Angio-associated migratory cell protein	99.58
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.58
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.58
KOG0646	476	consensus WD40 repeat protein [General function pr	99.58
KOG2096	420	consensus WD40 repeat protein [General function pr	99.57
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.57
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.57
KOG1274	933	consensus WD40 repeat protein [General function pr	99.56
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.55
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.55
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.54
KOG0641	350	consensus WD40 repeat protein [General function pr	99.54
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.54
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.54
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.53
PRK01742	429	tolB translocation protein TolB; Provisional	99.52
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.52
PRK03629	429	tolB translocation protein TolB; Provisional	99.51
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.5
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.5
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.49
PRK04922	433	tolB translocation protein TolB; Provisional	99.48
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.48
KOG0639	705	consensus Transducin-like enhancer of split protei	99.48
KOG1274	933	consensus WD40 repeat protein [General function pr	99.47
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.47
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.47
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.46
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.46
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.45
KOG1273	405	consensus WD40 repeat protein [General function pr	99.45
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.45
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.44
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.44
KOG1539	910	consensus WD repeat protein [General function pred	99.43
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.43
PRK02889	427	tolB translocation protein TolB; Provisional	99.43
KOG2096	420	consensus WD40 repeat protein [General function pr	99.42
KOG1539	910	consensus WD repeat protein [General function pred	99.42
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.41
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.41
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.41
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.4
KOG4328	498	consensus WD40 protein [Function unknown]	99.4
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.39
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.37
KOG2055	514	consensus WD40 repeat protein [General function pr	99.37
KOG2048	691	consensus WD40 repeat protein [General function pr	99.36
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.35
PRK04792	448	tolB translocation protein TolB; Provisional	99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.34
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.34
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.33
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.32
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.29
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.29
KOG1273	405	consensus WD40 repeat protein [General function pr	99.28
KOG2055	514	consensus WD40 repeat protein [General function pr	99.28
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.27
KOG0641	350	consensus WD40 repeat protein [General function pr	99.27
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.27
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.27
KOG0646	476	consensus WD40 repeat protein [General function pr	99.26
COG2319	466	FOG: WD40 repeat [General function prediction only	99.25
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.25
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.25
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.24
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.24
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.23
PRK11028	330	6-phosphogluconolactonase; Provisional	99.23
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.22
KOG1188	376	consensus WD40 repeat protein [General function pr	99.22
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.21
PRK03629	429	tolB translocation protein TolB; Provisional	99.21
KOG2048	691	consensus WD40 repeat protein [General function pr	99.21
KOG1310	758	consensus WD40 repeat protein [General function pr	99.21
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.2
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.2
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.19
PRK01742	429	tolB translocation protein TolB; Provisional	99.19
PRK05137	435	tolB translocation protein TolB; Provisional	99.19
KOG4227	609	consensus WD40 repeat protein [General function pr	99.19
PRK01029	428	tolB translocation protein TolB; Provisional	99.18
KOG4328	498	consensus WD40 protein [Function unknown]	99.18
KOG0649	325	consensus WD40 repeat protein [General function pr	99.18
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.17
PRK04922	433	tolB translocation protein TolB; Provisional	99.17
PRK04043	419	tolB translocation protein TolB; Provisional	99.17
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.17
COG2319	466	FOG: WD40 repeat [General function prediction only	99.16
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.15
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.15
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.14
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.14
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.14
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.13
PRK02889	427	tolB translocation protein TolB; Provisional	99.11
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.1
PRK11028	330	6-phosphogluconolactonase; Provisional	99.09
KOG1188	376	consensus WD40 repeat protein [General function pr	99.08
KOG4227	609	consensus WD40 repeat protein [General function pr	99.07
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.07
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.06
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.05
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.04
KOG2139	445	consensus WD40 repeat protein [General function pr	99.03
KOG2139	445	consensus WD40 repeat protein [General function pr	99.03
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.03
PRK01029	428	tolB translocation protein TolB; Provisional	99.03
PRK00178	430	tolB translocation protein TolB; Provisional	99.02
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.02
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.02
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.96
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.93
PRK04792	448	tolB translocation protein TolB; Provisional	98.93
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.87
KOG1310	758	consensus WD40 repeat protein [General function pr	98.85
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.82
KOG0649	325	consensus WD40 repeat protein [General function pr	98.8
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.78
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.76
KOG4547	541	consensus WD40 repeat-containing protein [General	98.76
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.71
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.71
KOG1963	792	consensus WD40 repeat protein [General function pr	98.71
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.64
PRK04043	419	tolB translocation protein TolB; Provisional	98.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.61
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.6
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.6
KOG2321	703	consensus WD40 repeat protein [General function pr	98.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.57
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.56
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.56
KOG2321	703	consensus WD40 repeat protein [General function pr	98.56
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.53
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.46
KOG1963	792	consensus WD40 repeat protein [General function pr	98.44
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.44
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.41
KOG4547	541	consensus WD40 repeat-containing protein [General	98.38
COG4946	668	Uncharacterized protein related to the periplasmic	98.37
COG4946	668	Uncharacterized protein related to the periplasmic	98.36
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.3
KOG2315	566	consensus Predicted translation initiation factor	98.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.25
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.24
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.22
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.13
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.09
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.07
KOG1334	559	consensus WD40 repeat protein [General function pr	98.07
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.0
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.98
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.97
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.96
KOG1334	559	consensus WD40 repeat protein [General function pr	97.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.91
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.9
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.9
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.9
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.84
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.81
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.8
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.79
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.79
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.75
KOG2695	425	consensus WD40 repeat protein [General function pr	97.73
KOG2314	698	consensus Translation initiation factor 3, subunit	97.69
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.68
KOG2315	566	consensus Predicted translation initiation factor	97.68
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.67
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.66
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.63
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.62
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.61
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.57
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.56
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.55
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.55
KOG2314	698	consensus Translation initiation factor 3, subunit	97.53
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.52
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.5
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.5
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.49
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.48
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.46
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.46
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.36
KOG2695	425	consensus WD40 repeat protein [General function pr	97.33
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.33
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.3
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.28
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.26
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.25
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.25
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.24
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.2
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.18
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.18
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.17
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.13
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.07
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.93
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.91
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.87
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.84
PRK13616	591	lipoprotein LpqB; Provisional	96.82
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.78
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	96.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.72
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.72
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.71
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.68
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.66
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.58
PRK02888	635	nitrous-oxide reductase; Validated	96.55
PRK10115	686	protease 2; Provisional	96.54
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.51
KOG3621	726	consensus WD40 repeat-containing protein [General	96.4
COG3391	381	Uncharacterized conserved protein [Function unknow	96.36
PRK02888	635	nitrous-oxide reductase; Validated	96.34
COG3391	381	Uncharacterized conserved protein [Function unknow	96.3
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.2
PF08953	65	DUF1899: Domain of unknown function (DUF1899); Int	96.19
KOG3621	726	consensus WD40 repeat-containing protein [General	96.18
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.13
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.06
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.03
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.02
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.9
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.64
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.63
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.46
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.44
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.42
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.42
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.37
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.11
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.05
PRK13616	591	lipoprotein LpqB; Provisional	94.97
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.92
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.72
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.68
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.35
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.16
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.03
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.69
KOG2395	644	consensus Protein involved in vacuole import and d	93.66
KOG2395	644	consensus Protein involved in vacuole import and d	93.57
PRK10115	686	protease 2; Provisional	93.56
KOG1008	783	consensus Uncharacterized conserved protein, conta	93.42
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	93.39
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.27
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.25
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	93.12
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	92.93
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.82
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.64
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.37
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	91.83
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	91.4
KOG2444	238	consensus WD40 repeat protein [General function pr	91.35
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	91.25
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.17
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.93
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.92
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	90.89
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.75
PRK13684	334	Ycf48-like protein; Provisional	90.75
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	90.31
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.03
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.25
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.9
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	88.88
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	88.85
KOG2444	238	consensus WD40 repeat protein [General function pr	88.79
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.68
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	88.66
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.65
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	88.4
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.96
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	87.93
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	87.68
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	87.65
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	87.63
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.35
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.18
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	87.08
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.77
COG5167	776	VID27 Protein involved in vacuole import and degra	86.76
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	86.66
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	85.28
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.26
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.12
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.07
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	84.1
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	83.67
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	81.85
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	81.46
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	81.23
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	81.16
COG1770	682	PtrB Protease II [Amino acid transport and metabol	80.43
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	80.36

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3.7e-25  Score=237.60  Aligned_cols=205  Identities=24%  Similarity=0.344  Sum_probs=174.7

Q ss_pred             cCCCccccceeecCCcceeecCCCCeEEEE--------------EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCC
Q 004203           47 VAPRTKHSSKRLLGETARKCSGSFSQIFEA--------------GRDARRGLASWVEAESLHHLRPKYC----PLSPPPR  108 (768)
Q Consensus        47 is~~~~kv~k~~wd~s~~~~s~s~~~l~~a--------------~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~  108 (768)
                      ++.+..+.+...|+.....|+.........              ..+.+..|++++.||++++|+....    .|.+|..
T Consensus       183 fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~  262 (459)
T KOG0272|consen  183 FSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLA  262 (459)
T ss_pred             eecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchh
Confidence            444556666667777777776433222221              1124678999999999999999874    6889999


Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l  188 (768)
                      .|..++|+|+|++|++++.|.+-++||+++++.+....||...|.+++|+| ||.++++|+.|..-+|||+++|.++..+
T Consensus       263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L  341 (459)
T KOG0272|consen  263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFL  341 (459)
T ss_pred             hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEe
Confidence            999999999999999999999999999999999999999999999999999 9999999999999999999999999887


Q ss_pred             c-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          189 D-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       189 ~-h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      . |.+.|.+++|+|+|..||+|+. +.++|||++......   .+..|.+-|+.|.|+|+..+++++++
T Consensus       342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             cccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---ecccccchhhheEecccCCeEEEEcc
Confidence            4 8999999999999999999995 559999999988644   78899999999999996555666554

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.2e-24  Score=233.72  Aligned_cols=238  Identities=20%  Similarity=0.208  Sum_probs=195.7

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203           74 FEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPD--G~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (768)
                      ......++..|++++.+|.+++|+...+    +|.+|+..|.++.|+|.  +..|++|+.||+|++|++++...+..|.+
T Consensus       180 ~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g  259 (459)
T KOG0272|consen  180 GCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG  259 (459)
T ss_pred             eeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhc
Confidence            3345568899999999999999999877    58899999999999995  67999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~  225 (768)
                      |...|..++|+| +|++|++++.|.+-+|||+++++.+.. -+|...|.+++|++||.++++|+-|. -+|||++++..+
T Consensus       260 H~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i  338 (459)
T KOG0272|consen  260 HLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI  338 (459)
T ss_pred             chhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEE
Confidence            999999999999 999999999999999999999876554 46999999999999999999999665 999999999975


Q ss_pred             cCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCC------------------CeE
Q 004203          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPP------------------PVI  282 (768)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~------------------~~V  282 (768)
                      .   .+.+|.+.|.+|.|+|+|..++++++     +||++..+.   +.+..+|.+...                  ..+
T Consensus       339 m---~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~  412 (459)
T KOG0272|consen  339 M---FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV  412 (459)
T ss_pred             E---EecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc---ceecccccchhhheEecccCCeEEEEcccCcce
Confidence            5   78889999999999999998887665     888885443   444445433211                  233


Q ss_pred             EEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203          283 CMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (768)
Q Consensus       283 ~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~  321 (768)
                      .+|...+   -.+.....+....+..+.+++|+..|+-.
T Consensus       413 kiWs~~~---~~~~ksLaGHe~kV~s~Dis~d~~~i~t~  448 (459)
T KOG0272|consen  413 KIWSTRT---WSPLKSLAGHEGKVISLDISPDSQAIATS  448 (459)
T ss_pred             eeecCCC---cccchhhcCCccceEEEEeccCCceEEEe
Confidence            3444332   23333444566678888889998888863

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=2.3e-22  Score=230.26  Aligned_cols=264  Identities=18%  Similarity=0.203  Sum_probs=186.9

Q ss_pred             CCCcceecccccccccCCCccccceeecC-CcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCe
Q 004203           32 NSRLRNVFGLLAQREVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRST  110 (768)
Q Consensus        32 ssk~rnIf~~~akrEis~~~~kv~k~~wd-~s~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~V  110 (768)
                      .|||||+|++..|+|.+|.+.++....|+ .+.+.++..+... .+...++..++.-.+.|.+   ......+.+|.+.|
T Consensus         3 ~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~-~w~~~gg~~v~~~~~~G~~---~~~~~~l~GH~~~V   78 (493)
T PTZ00421          3 VSRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAV-PWQQLGSTAVLKHTDYGKL---ASNPPILLGQEGPI   78 (493)
T ss_pred             cccccccccccCCcccceeccccccccCCCCCcEeECCceEEE-EEecCCceEEeeccccccC---CCCCceEeCCCCCE
Confidence            58999999999999999999999999999 5665565444222 1111112111111111110   01112467899999


Q ss_pred             EEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 004203          111 IAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (768)
Q Consensus       111 tslafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg  182 (768)
                      ++++|+| |+++|++++.|++|++||+.++       +.+..+.+|...|.+++|+|.+.++|++++.|++|+|||++++
T Consensus        79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg  158 (493)
T PTZ00421         79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG  158 (493)
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC
Confidence            9999999 8999999999999999999765       3567889999999999999944679999999999999999999


Q ss_pred             cEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCC-eEEEEEccCCCeEEEEEeeCCc
Q 004203          183 ECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRS-LRAVHFHPHAAPLLLTAEVNDL  259 (768)
Q Consensus       183 ~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~-V~sVaFSPDG~~LlaS~svwdl  259 (768)
                      +....+. |...|.+++|+|+|.+|++++.| .|++||+++++...   .+..|... +..+.|.+++..+++++.... 
T Consensus       159 ~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s-  234 (493)
T PTZ00421        159 KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVEAHASAKSQRCLWAKRKDLIITLGCSKS-  234 (493)
T ss_pred             eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEecCCCCcceEEEEcCCCCeEEEEecCCC-
Confidence            8887765 78899999999999999999955 59999999877533   45566543 457889999887776542100 


Q ss_pred             CCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEe
Q 004203          260 DSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (768)
Q Consensus       260 ~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~  322 (768)
                                        ..+.+.+|+....... +...........+.+.|++|+..+++..
T Consensus       235 ------------------~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lgg  278 (493)
T PTZ00421        235 ------------------QQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGS  278 (493)
T ss_pred             ------------------CCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence                              0123445554322111 1111111122345789999999888753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.92  E-value=3.8e-24  Score=228.19  Aligned_cols=219  Identities=18%  Similarity=0.244  Sum_probs=178.5

Q ss_pred             CCCCCCcceecccccccccCCCccccceeecCCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 004203           29 NHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPR  108 (768)
Q Consensus        29 ~~rssk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~gH~~  108 (768)
                      -+|+||||++|++.+|+|.||.++++.+..||+.++..++.|-.+..-+..++..++-  .-..+-..|.....+.+|++
T Consensus         5 ~vR~SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~Vi--Pl~k~Gr~d~~~P~v~GHt~   82 (472)
T KOG0303|consen    5 VVRSSKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVI--PLVKTGRMDASYPLVCGHTA   82 (472)
T ss_pred             hhhhhhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeec--ccccccccCCCCCCccCccc
Confidence            3799999999999999999999999999999999988887775555544333333332  22333334566677899999


Q ss_pred             CeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203          109 STIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (768)
Q Consensus       109 ~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (768)
                      +|.+++|+| +...||+||.|.+|+||.+-.+       +.+..|.||...|.-+.|||.-.+.|++++.|.+|.+||+.
T Consensus        83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~  162 (472)
T KOG0303|consen   83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG  162 (472)
T ss_pred             cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence            999999999 8889999999999999998553       45788999999999999999888999999999999999999


Q ss_pred             CCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCC-CCeEEEEEccCCCeEEEE
Q 004203          181 TAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTR-RSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       181 sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~-~~V~sVaFSPDG~~LlaS  253 (768)
                      +|+.+.++.|.+.|.++.|+-||.+|++.+.|+ |+|||.++++...   ....|. ..-..+.|-.+|. ++++
T Consensus       163 tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~---e~~~heG~k~~Raifl~~g~-i~tT  233 (472)
T KOG0303|consen  163 TGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS---EGVAHEGAKPARAIFLASGK-IFTT  233 (472)
T ss_pred             CCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee---ecccccCCCcceeEEeccCc-eeee
Confidence            999999999999999999999999999999665 9999999998654   223342 2234455666666 4443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.91  E-value=5.8e-23  Score=211.66  Aligned_cols=243  Identities=17%  Similarity=0.183  Sum_probs=190.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC
Q 004203           79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~---------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (768)
                      .+...+++.+.|+++.+|++...         .|.||...|..++.++||+++++++.|+++++||+.+|+....|.||+
T Consensus        26 ~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~  105 (315)
T KOG0279|consen   26 KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT  105 (315)
T ss_pred             CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC
Confidence            46788999999999999998743         478999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCCeEEEEEcCC--CCEEEEEECCe-EEEEEcCCCcc
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHAS--GELLAVASGHK-LYIWRYNMREE  224 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~--h~~~V~svafSPD--G~~LatgSdd~-I~IWDl~t~~~  224 (768)
                      ..|.+++|++ |...+++|++|++|++||+..........  +.+.|.++.|+|+  ..+|+.++.|+ +++||+++.+.
T Consensus       106 ~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l  184 (315)
T KOG0279|consen  106 KDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL  184 (315)
T ss_pred             CceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence            9999999999 99999999999999999997644333333  3678999999998  66889888666 99999999886


Q ss_pred             ccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc------------CCCCeEEEecC
Q 004203          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR------------YPPPVICMAGA  287 (768)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~------------~p~~~V~l~d~  287 (768)
                      ..   ...+|...++.+++||||...+.++.     .||++.++....+....-...            ...+.|.+|+.
T Consensus       185 ~~---~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl  261 (315)
T KOG0279|consen  185 RT---TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDL  261 (315)
T ss_pred             hh---ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEec
Confidence            44   67889999999999999995555443     899987766443322111100            12355777887


Q ss_pred             CCCCCCC-cccc-----cCCCCCCceEEEEecCCCEEEEEecCC
Q 004203          288 HSSSHPG-LAEE-----VPLITPPFLRPSFVRDDERISLQHTEH  325 (768)
Q Consensus       288 ~s~d~~~-L~~~-----~~~~slpil~psFSpDG~rIv~~~~d~  325 (768)
                      .+..... |..+     .......++..+||+||..+..+..+.
T Consensus       262 ~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  262 ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence            6543321 1111     112234466899999999999876644

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.3e-23  Score=220.23  Aligned_cols=243  Identities=19%  Similarity=0.267  Sum_probs=191.6

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCeE
Q 004203           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-----DGKTLASTHGDHTVKIIDCQTGSC  141 (768)
Q Consensus        72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSP-----DG~~LaSgS~DgtVrVWDl~tg~~  141 (768)
                      .+.++...+++.|++|+.||+|++||.+++     .|.+|+..|++++|-|     ..++|++++.||+|+|||+..+.+
T Consensus       160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~  239 (480)
T KOG0271|consen  160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC  239 (480)
T ss_pred             EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE
Confidence            345556678999999999999999999876     5889999999999976     678999999999999999999999


Q ss_pred             EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEc-----------CCCC-----
Q 004203          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFH-----------ASGE-----  204 (768)
Q Consensus       142 l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafS-----------PDG~-----  204 (768)
                      +..+.||+.+|+|++|--  ..+|++|+.|++|++|+...|.+.+++ +|...|+.++.+           |.++     
T Consensus       240 ~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  240 VRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             EEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence            999999999999999953  679999999999999999999988876 477788877665           3343     


Q ss_pred             --------------------EEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC--C
Q 004203          205 --------------------LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD--S  261 (768)
Q Consensus       205 --------------------~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~--s  261 (768)
                                          .|++++||. +.+|+-...+.  ....+.+|..-|+.+.||||++++++++-+..++  .
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD  395 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc--chhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence                                499999876 99998765543  3346789999999999999999877765433222  2


Q ss_pred             CCcceeEeecCCcccC-----------------CCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203          262 SESSLTLATSPGYWRY-----------------PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (768)
Q Consensus       262 g~~~~~L~t~~G~~~~-----------------p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~  321 (768)
                      ++....+.++.||...                 ....+.+|+..+   ..+..+.++..-..+.+-|+|||++++.+
T Consensus       396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t---kKl~~DLpGh~DEVf~vDwspDG~rV~sg  469 (480)
T KOG0271|consen  396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT---KKLKQDLPGHADEVFAVDWSPDGQRVASG  469 (480)
T ss_pred             CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee---eeecccCCCCCceEEEEEecCCCceeecC
Confidence            3344566777777541                 113344444333   34556667777778899999999999863

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.91  E-value=2.6e-23  Score=237.11  Aligned_cols=180  Identities=23%  Similarity=0.327  Sum_probs=166.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      ...+.+.|+++++|.+||+|.+.+.    .++||..+|.++.|+|-|-+|||+|.|++-++|..+..+.++.|.||...|
T Consensus       459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV  538 (707)
T KOG0263|consen  459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDV  538 (707)
T ss_pred             ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccccc
Confidence            4468899999999999999999986    478999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI  230 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~  230 (768)
                      .|+.||| +..++++||.|.+||+||+.+|..++.+ +|.++|.+++|+|+|++|++|+.++ |++||+.++....   .
T Consensus       539 ~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~---~  614 (707)
T KOG0263|consen  539 DCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK---Q  614 (707)
T ss_pred             ceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh---h
Confidence            9999999 9999999999999999999999999986 6999999999999999999999665 9999999988654   6


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~  260 (768)
                      +.+|.+.|.++.||.||..|++++.     +||+.
T Consensus       615 l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  615 LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             hhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            7889999999999999998777766     55554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.90  E-value=7.3e-23  Score=233.47  Aligned_cols=218  Identities=22%  Similarity=0.320  Sum_probs=184.3

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----------------------------------CCCCCCCCeEEEEEC
Q 004203           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----------------------------------PLSPPPRSTIAAAFS  116 (768)
Q Consensus        72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~-----------------------------------~L~gH~~~VtslafS  116 (768)
                      .......++...|+.|-.|..|++|.+...                                   ++.+|.++|.++.|+
T Consensus       381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs  460 (707)
T KOG0263|consen  381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS  460 (707)
T ss_pred             ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence            344446677888888899999999998621                                   256899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeE
Q 004203          117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIA  195 (768)
Q Consensus       117 PDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~  195 (768)
                      ||.++|+++|.|++||+|.+.+..++..++||..+|+.+.|+| .|-+|||++.|++.++|......+.+.+ +|...|.
T Consensus       461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~  539 (707)
T KOG0263|consen  461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVD  539 (707)
T ss_pred             ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhcccccccc
Confidence            9999999999999999999999999999999999999999999 9999999999999999999998888886 5899999


Q ss_pred             EEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004203          196 SIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (768)
Q Consensus       196 svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~  269 (768)
                      |+.|+|++.++++||.|+ +++||+.++..++   .+.+|..+|.+++|||+|++|++++.     +||+..+.....+.
T Consensus       540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~  616 (707)
T KOG0263|consen  540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK  616 (707)
T ss_pred             eEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence            999999999999999766 9999999998766   67899999999999999999888765     55555432222221


Q ss_pred             ecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          270 TSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       270 t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                         +|                            ..-+....||+||..++....|
T Consensus       617 ---~H----------------------------t~ti~SlsFS~dg~vLasgg~D  640 (707)
T KOG0263|consen  617 ---GH----------------------------TGTIYSLSFSRDGNVLASGGAD  640 (707)
T ss_pred             ---cc----------------------------cCceeEEEEecCCCEEEecCCC
Confidence               22                            2234478999999999985443

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=1.1e-20  Score=218.54  Aligned_cols=212  Identities=16%  Similarity=0.179  Sum_probs=168.0

Q ss_pred             CCCcceecccccccccCCCccccceeecCCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCC
Q 004203           32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPP  107 (768)
Q Consensus        32 ssk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~  107 (768)
                      -++|||+|+...+..  |.+.++....|+.....++..+..+..-. .      .|+.++.|++|+....    .+.+|.
T Consensus         4 ~~~~~~~~~~~~~~~--y~diri~~~~~~s~~ia~n~~~~A~~w~~-~------gGG~~gvI~L~~~~r~~~v~~L~gH~   74 (568)
T PTZ00420          4 VPLIKNLYPDPSNNL--FDDLRICSRVIDSCGIACSSGFVAVPWEV-E------GGGLIGAIRLENQMRKPPVIKLKGHT   74 (568)
T ss_pred             cchhhhcCCchhhCe--eccEEccccccCceeEeeCCCeEEEEEEc-C------CCCceeEEEeeecCCCceEEEEcCCC
Confidence            389999999977655  88999988899888877664443322111 1      2456788999987654    478999


Q ss_pred             CCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCe--------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203          108 RSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS--------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (768)
Q Consensus       108 ~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg~--------~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (768)
                      +.|.+++|+|+ +.+|++|+.|++|+|||+.++.        .+..+.+|...|.+++|+|++..++++++.|++|+|||
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWD  154 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWD  154 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEE
Confidence            99999999996 8999999999999999997642        34567899999999999994344668999999999999


Q ss_pred             CCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecCCCCeE-----EEEEccCCCeEEE
Q 004203          179 ASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLR-----AVHFHPHAAPLLL  252 (768)
Q Consensus       179 l~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~-----sVaFSPDG~~Lla  252 (768)
                      +++++....+.+...|.+++|+|+|.+|++++. +.|+|||+++++...   .+.+|...+.     ...|++++.+|++
T Consensus       155 l~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~g~~~s~~v~~~~fs~d~~~IlT  231 (568)
T PTZ00420        155 IENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHDGGKNTKNIWIDGLGGDDNYILS  231 (568)
T ss_pred             CCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEecccCCceeEEEEeeeEcCCCCEEEE
Confidence            999988877778889999999999999998885 459999999887543   5566765543     3345689888887


Q ss_pred             EEe
Q 004203          253 TAE  255 (768)
Q Consensus       253 S~s  255 (768)
                      ++.
T Consensus       232 tG~  234 (568)
T PTZ00420        232 TGF  234 (568)
T ss_pred             EEc
Confidence            663

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.89  E-value=6.5e-22  Score=203.99  Aligned_cols=217  Identities=20%  Similarity=0.228  Sum_probs=170.3

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC--CC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--RR  150 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--~g  150 (768)
                      ...++...++++.|+.+++||+.++    +|.+|...|.+++|++|.+.|++|+.|.+|++||+... +..++..+  .+
T Consensus        71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~  149 (315)
T KOG0279|consen   71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHRE  149 (315)
T ss_pred             EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcC
Confidence            3468899999999999999999985    58999999999999999999999999999999998754 44444333  78


Q ss_pred             CcEEEEEccCC-CCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccC
Q 004203          151 TPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSS  227 (768)
Q Consensus       151 ~V~sVafSP~d-g~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~  227 (768)
                      .|.+++|+|.. ..+|++++.|++|++||+++-+.... .+|.+.++.++++|||.++++|+. +.+.+||++.++..  
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l--  227 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL--  227 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee--
Confidence            99999999943 67999999999999999999887666 479999999999999999999985 45999999998763  


Q ss_pred             CeEeecCCCCeEEEEEccCCCeEEEEEe----eCCcCCCCcceeEee-cCCcccCCCCeEEEecCCCCCCCCcccc
Q 004203          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSESSLTLAT-SPGYWRYPPPVICMAGAHSSSHPGLAEE  298 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPDG~~LlaS~s----vwdl~sg~~~~~L~t-~~G~~~~p~~~V~l~d~~s~d~~~L~~~  298 (768)
                        ...++...|++++|+|+...|+....    +|++........+.. ..|.........++.-..+.+..+|...
T Consensus       228 --ysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g  301 (315)
T KOG0279|consen  228 --YSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAG  301 (315)
T ss_pred             --EeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEee
Confidence              46788999999999999887766443    898886655443321 1111111223444444445555555544

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=4.4e-22  Score=211.72  Aligned_cols=244  Identities=15%  Similarity=0.208  Sum_probs=185.2

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEec
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLHG  147 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l-~~l~g  147 (768)
                      +.+....++..|++|+-|.++++||+.+.    +.++|..-|.|++|+|||+.||+|+.||.|++||.++|+++ ..|.+
T Consensus       119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g  198 (480)
T KOG0271|consen  119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG  198 (480)
T ss_pred             EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC
Confidence            34445668999999999999999999987    57899999999999999999999999999999999998765 78999


Q ss_pred             CCCCcEEEEEccC----CCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCC
Q 004203          148 HRRTPWVVRFHPL----NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (768)
Q Consensus       148 H~g~V~sVafSP~----dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t  221 (768)
                      |...|++++|.|.    ..++|++++.||+|+|||+..++++..+ +|..+|+|+.|--+| +|++++.|+ |++|+...
T Consensus       199 H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d  277 (480)
T KOG0271|consen  199 HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD  277 (480)
T ss_pred             cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccc
Confidence            9999999999872    4568999999999999999999998885 699999999998655 788888554 99999988


Q ss_pred             CccccCCeEeecCCCCeEEEEEc-----------cCCCe-------------------------EEEEEeeCCcCCC---
Q 004203          222 REETSSPRIVLRTRRSLRAVHFH-----------PHAAP-------------------------LLLTAEVNDLDSS---  262 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFS-----------PDG~~-------------------------LlaS~svwdl~sg---  262 (768)
                      +....   .+.+|..+|+.++.+           |.+++                         +++++....+--|   
T Consensus       278 G~~~r---~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~  354 (480)
T KOG0271|consen  278 GKLCR---ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF  354 (480)
T ss_pred             hhHHH---hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence            87654   678899999988877           33444                         5555542222111   


Q ss_pred             CcceeEeecCCccc------CCC-----------CeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          263 ESSLTLATSPGYWR------YPP-----------PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       263 ~~~~~L~t~~G~~~------~p~-----------~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                      .....+....||..      |.+           ..|.+|+..++.......   +.-.+.+.++||.|.+.|+....
T Consensus       355 ~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR---GHv~~VYqvawsaDsRLlVS~Sk  429 (480)
T KOG0271|consen  355 KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR---GHVAAVYQVAWSADSRLLVSGSK  429 (480)
T ss_pred             ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh---hccceeEEEEeccCccEEEEcCC
Confidence            12223333344432      222           445666655554433332   34446678899999988886433

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=4.5e-21  Score=218.14  Aligned_cols=188  Identities=29%  Similarity=0.422  Sum_probs=160.2

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeC------CCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEec
Q 004203           75 EAGRDARRGLASWVEAESLHHLRP------KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCLKVLHG  147 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~------~t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl-~tg~~l~~l~g  147 (768)
                      .....++..+++++.++.+++|+.      ....+.+|...|.+++|+||++++++++.|++|+|||+ ..+.+++++++
T Consensus       165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g  244 (456)
T KOG0266|consen  165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG  244 (456)
T ss_pred             EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence            344567888999999999999999      33456799999999999999999999999999999999 56689999999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~  225 (768)
                      |...|++++|+| +++++++|+.|++|+|||++++++++.+. |.+.|.+++|++++.+|++++.++ |++||+.++...
T Consensus       245 H~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~  323 (456)
T KOG0266|consen  245 HSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL  323 (456)
T ss_pred             CCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence            999999999999 77999999999999999999999999875 888999999999999999998554 999999998732


Q ss_pred             cCCeEeecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCc
Q 004203          226 SSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSES  264 (768)
Q Consensus       226 ~~~~~l~~h~~--~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~  264 (768)
                       ....+.++..  .++.+.|+|+++++++...     .|++..+..
T Consensus       324 -~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~  368 (456)
T KOG0266|consen  324 -CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS  368 (456)
T ss_pred             -eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence             0112334433  6999999999999988765     556654433

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.87  E-value=1.7e-20  Score=194.56  Aligned_cols=217  Identities=16%  Similarity=0.163  Sum_probs=173.3

Q ss_pred             ccCCCccccceeecCCcceeecCCC------------CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------CC
Q 004203           46 EVAPRTKHSSKRLLGETARKCSGSF------------SQIFEAGRDARRGLASWVEAESLHHLRPKYC----------PL  103 (768)
Q Consensus        46 Eis~~~~kv~k~~wd~s~~~~s~s~------------~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----------~L  103 (768)
                      ....+.++.....-|...+.|+.-.            -....+....+..++.++-|....+|++.+.          ++
T Consensus        62 ~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l  141 (343)
T KOG0286|consen   62 DWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL  141 (343)
T ss_pred             EecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee
Confidence            4445555555555555555554211            1233345567888888888988888888743          47


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 004203          104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE  183 (768)
Q Consensus       104 ~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~  183 (768)
                      .+|++.+.|+.|-+ ...|+++|.|.++.+||+++|+.+..|.||.+.|.++.++|.+++.+++|+-|+..+|||++.+.
T Consensus       142 ~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~  220 (343)
T KOG0286|consen  142 AGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ  220 (343)
T ss_pred             cCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence            89999999999997 55778999999999999999999999999999999999999899999999999999999999999


Q ss_pred             EEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----e
Q 004203          184 CIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----V  256 (768)
Q Consensus       184 ~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----v  256 (768)
                      ++++| +|+..|++++|.|+|.-+++|++|. .++||++...+.. ......-...|++++||..|++|+++..     +
T Consensus       221 c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a-~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~v  299 (343)
T KOG0286|consen  221 CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELA-VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNV  299 (343)
T ss_pred             eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEe-eeccCcccCCceeEEEcccccEEEeeecCCceeE
Confidence            99987 5999999999999999999999776 9999999987654 1111122467999999999998777554     6


Q ss_pred             CCcCCCCc
Q 004203          257 NDLDSSES  264 (768)
Q Consensus       257 wdl~sg~~  264 (768)
                      ||.-.++.
T Consensus       300 WDtlk~e~  307 (343)
T KOG0286|consen  300 WDTLKGER  307 (343)
T ss_pred             eeccccce
Confidence            66554433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.86  E-value=2.5e-20  Score=189.76  Aligned_cols=238  Identities=15%  Similarity=0.209  Sum_probs=184.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--EEEEEecCCCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH~g~V~  153 (768)
                      ....|++.+.|.+|++|.+.++    +++-....|+.+...||++.||.+++- .||+||+++++  ++.+|.+|++.|.
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence            4567889999999999999987    455566789999999999999988775 79999999876  5899999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEee
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVL  232 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~  232 (768)
                      .+.|.- +++.+++|+.||+++|||++...+++.+.+..+|+++..+|+...|+++.. +.|++||+.......  ..+.
T Consensus        88 aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~--~liP  164 (311)
T KOG0315|consen   88 AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIP  164 (311)
T ss_pred             EEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--ccCC
Confidence            999999 999999999999999999999999999999999999999999999999885 559999998875533  2344


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCccee------EeecCCccc---C-----------CCCeEEEecC
Q 004203          233 RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLT------LATSPGYWR---Y-----------PPPVICMAGA  287 (768)
Q Consensus       233 ~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~------L~t~~G~~~---~-----------p~~~V~l~d~  287 (768)
                      .....|+++...|||+++++..+     +|++-.......      +..+++|.-   +           ....+.+|+.
T Consensus       165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence            55689999999999998777654     887765443322      222333321   1           1233445553


Q ss_pred             CCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          288 HSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       288 ~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                      ..-  ..+.....+..--.|.+.||.||++|+-...
T Consensus       245 ~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  245 DDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASS  278 (311)
T ss_pred             CCc--eeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence            222  2333333344445667999999999997433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.86  E-value=3.8e-20  Score=192.54  Aligned_cols=196  Identities=16%  Similarity=0.175  Sum_probs=171.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      ...++..+++++.|..|.+|+....     .+++|++.|..+.|.+|++.|++++.|.+|+.||+++|++++.+++|..-
T Consensus        55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~  134 (338)
T KOG0265|consen   55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF  134 (338)
T ss_pred             ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccce
Confidence            3458999999999999999996533     68899999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~  230 (768)
                      |+.+..+..+..++.+++.|++++|||+++.++++++.....++++.|..++..+.+|. |+.|++||++..+...   .
T Consensus       135 vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~---~  211 (338)
T KOG0265|consen  135 VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY---T  211 (338)
T ss_pred             eeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE---E
Confidence            99988766566788899999999999999999999999899999999999999999998 6679999999888644   7


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCccee-EeecCCcc
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLT-LATSPGYW  275 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~-L~t~~G~~  275 (768)
                      +.+|.+.|+.+..+|+|.++++-+.     +||++......+ +....|+.
T Consensus       212 lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~  262 (338)
T KOG0265|consen  212 LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI  262 (338)
T ss_pred             eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence            8899999999999999998887543     888886554433 55555543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.85  E-value=1.7e-20  Score=201.18  Aligned_cols=219  Identities=18%  Similarity=0.261  Sum_probs=177.7

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC---CCCCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC---PLSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~-~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      .+.++..++|+..+|.|+.|+..-.   .+..|. ..|.+++|||+...|+++++|++|+|||....+....+.||+-.|
T Consensus       146 ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdV  225 (464)
T KOG0284|consen  146 WSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDV  225 (464)
T ss_pred             EccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCc
Confidence            4467899999999999999999765   344555 999999999999999999999999999999999899999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI  230 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~  230 (768)
                      .++.||| ...+++++++|..|++||.++++|+.++ .|...|..+.|+|++.+|++++.|. ++++|+++.++..   .
T Consensus       226 ksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~---~  301 (464)
T KOG0284|consen  226 KSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF---T  301 (464)
T ss_pred             ceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH---H
Confidence            9999999 8889999999999999999999999986 5888999999999999999999776 9999999766544   6


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEE
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS  310 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~ps  310 (768)
                      ..+|++.|+++.|+|-..-|++++..+.                      .+.+|...  ....+...+......+|..+
T Consensus       302 ~r~Hkkdv~~~~WhP~~~~lftsgg~Dg----------------------svvh~~v~--~~~p~~~i~~AHd~~iwsl~  357 (464)
T KOG0284|consen  302 YRGHKKDVTSLTWHPLNESLFTSGGSDG----------------------SVVHWVVG--LEEPLGEIPPAHDGEIWSLA  357 (464)
T ss_pred             hhcchhhheeeccccccccceeeccCCC----------------------ceEEEecc--ccccccCCCcccccceeeee
Confidence            7789999999999998887777664110                      11111111  11223333344455678888


Q ss_pred             EecCCCEEEEEec
Q 004203          311 FVRDDERISLQHT  323 (768)
Q Consensus       311 FSpDG~rIv~~~~  323 (768)
                      |.|=|-.++-+-+
T Consensus       358 ~hPlGhil~tgsn  370 (464)
T KOG0284|consen  358 YHPLGHILATGSN  370 (464)
T ss_pred             ccccceeEeecCC
Confidence            8888876665333

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.85  E-value=2.6e-20  Score=193.21  Aligned_cols=171  Identities=20%  Similarity=0.302  Sum_probs=156.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      +...|++++-|.+..+||++++    .|.+|.+.|.+++++| +++.|++|+-|+..++||++.+.+++.|.+|...|+.
T Consensus       155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINs  234 (343)
T KOG0286|consen  155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINS  234 (343)
T ss_pred             CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccce
Confidence            3678999999999999999988    4789999999999999 9999999999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI  230 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~---~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~  230 (768)
                      |+|.| +|.-|++|+.|++.++||++..+.+..+.+.   .+|++++|+..|++|+.|.++. +.+||.-+++...   .
T Consensus       235 v~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg---~  310 (343)
T KOG0286|consen  235 VRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG---V  310 (343)
T ss_pred             EEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE---E
Confidence            99999 9999999999999999999999998888755   4899999999999999988655 9999998887655   7


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEE
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      +.+|.+.|.++..+|||.-+++++
T Consensus       311 L~GHeNRvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  311 LAGHENRVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             eeccCCeeEEEEECCCCcEEEecc
Confidence            889999999999999998554443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.85  E-value=1.1e-19  Score=206.18  Aligned_cols=213  Identities=20%  Similarity=0.270  Sum_probs=172.0

Q ss_pred             cCCCEEEEEe-CCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           79 DARRGLASWV-EAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        79 d~g~~LvSgs-~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ..|..|+-++ .-|.+-+|+....    +.++|...++++++||||+++++|+.|++|||||..+|-|..+|..|+..|+
T Consensus       317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt  396 (893)
T KOG0291|consen  317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT  396 (893)
T ss_pred             ccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE
Confidence            3466666554 4578999998876    5679999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCe
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR--PIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPR  229 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~--~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~  229 (768)
                      .+.|+. .++.+++.+.||+|+.||+......+++..+.  ...+++-+|.|..++.|+.+.  |++|++.+++...   
T Consensus       397 ~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---  472 (893)
T KOG0291|consen  397 AVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---  472 (893)
T ss_pred             EEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---
Confidence            999999 99999999999999999999999999987555  557888899999999998776  9999999999766   


Q ss_pred             EeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEE
Q 004203          230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRP  309 (768)
Q Consensus       230 ~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p  309 (768)
                      .+.+|.++|.+++|+|+|..|++++-++.                       |.+|+.-+....   .++-......+..
T Consensus       473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkT-----------------------VRiW~if~s~~~---vEtl~i~sdvl~v  526 (893)
T KOG0291|consen  473 ILSGHEGPVSGLSFSPDGSLLASGSWDKT-----------------------VRIWDIFSSSGT---VETLEIRSDVLAV  526 (893)
T ss_pred             hhcCCCCcceeeEEccccCeEEeccccce-----------------------EEEEEeeccCce---eeeEeeccceeEE
Confidence            78899999999999999995554432222                       223332111100   0111122345688


Q ss_pred             EEecCCCEEEEE
Q 004203          310 SFVRDDERISLQ  321 (768)
Q Consensus       310 sFSpDG~rIv~~  321 (768)
                      +|+|||+.|++.
T Consensus       527 sfrPdG~elaVa  538 (893)
T KOG0291|consen  527 SFRPDGKELAVA  538 (893)
T ss_pred             EEcCCCCeEEEE
Confidence            999999999984

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=8.2e-20  Score=209.28  Aligned_cols=312  Identities=17%  Similarity=0.180  Sum_probs=220.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      ..+-.+++.--.|.|++||.+-+    +|.+|.++|.+++|+|++.+|+||++|.+|+||+.++.+++.++.||-..|+.
T Consensus        19 P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt   98 (1202)
T KOG0292|consen   19 PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRT   98 (1202)
T ss_pred             CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEE
Confidence            34566777778899999999866    57899999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccc-------
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET-------  225 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~-------  225 (768)
                      +.||+ .-.+|+|+|+|.+|+||+..+++++..+ +|...|.|..|+|....++++| |.+|++||+..-...       
T Consensus        99 ~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~  177 (1202)
T KOG0292|consen   99 VFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSL  177 (1202)
T ss_pred             eeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCc
Confidence            99999 8999999999999999999999999985 6999999999999999999999 667999998532110       


Q ss_pred             -------------------cCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCC----cceeEeecCCcccCC----
Q 004203          226 -------------------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE----SSLTLATSPGYWRYP----  278 (768)
Q Consensus       226 -------------------~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~----~~~~L~t~~G~~~~p----  278 (768)
                                         .....+.+|...|+.++|+|.-..|++++.+..++-|+    ....+.+-.||.+..    
T Consensus       178 e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvl  257 (1202)
T KOG0292|consen  178 EDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVL  257 (1202)
T ss_pred             hhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEE
Confidence                               01234568899999999999999777766532222111    112233344444322    


Q ss_pred             -------------CCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEec----------
Q 004203          279 -------------PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQS----------  335 (768)
Q Consensus       279 -------------~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~----------  335 (768)
                                   ...+.+|+...........-..+   ++|..+-.|.....+++|++.   -..+-..          
T Consensus       258 fhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend---RFW~laahP~lNLfAAgHDsG---m~VFkleRErpa~~v~~  331 (1202)
T KOG0292|consen  258 FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND---RFWILAAHPELNLFAAGHDSG---MIVFKLERERPAYAVNG  331 (1202)
T ss_pred             ecCccceeEecCCCccEEEEecccccceeeeeccCC---eEEEEEecCCcceeeeecCCc---eEEEEEcccCceEEEcC
Confidence                         24566677665555444432222   344444444333333333221   1111111          


Q ss_pred             ------------------------------------------cCCCceeeeecccCCCCCcCceeccCCCCCCCCCCCCC
Q 004203          336 ------------------------------------------LRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGT  373 (768)
Q Consensus       336 ------------------------------------------~~ss~~~rl~~~~~~t~~~~~~v~P~~~~~~~~~~~~~  373 (768)
                                                                .+....+ |..++.+...++.+.-|.++.+.....+..
T Consensus       332 n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~v-lics~~~n~~y~L~~ipk~~~~~~~~~~~~  410 (1202)
T KOG0292|consen  332 NGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAV-LICSNLDNGEYELVQIPKDSDGVSDGKDVK  410 (1202)
T ss_pred             CEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeE-EEEeccCCCeEEEEEecCcccccCCchhhh
Confidence                                                      1111222 222244556666666777777766656666


Q ss_pred             CCCCcccccccCCccccccc-ccccc
Q 004203          374 GTDSFVSEIDGALPQAAIGA-VGTLD  398 (768)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~-~~~~~  398 (768)
                      .+++-..-|.++++++++++ .++-+
T Consensus       411 k~tG~~a~fvarNrfavl~k~~~~v~  436 (1202)
T KOG0292|consen  411 KGTGEGALFVARNRFAVLDKSNEQVV  436 (1202)
T ss_pred             cCCCCceEEEEecceEEEEecCcceE
Confidence            66777778899999999999 44444

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.85  E-value=4e-20  Score=195.60  Aligned_cols=247  Identities=16%  Similarity=0.193  Sum_probs=190.3

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (768)
                      ..++.......+++++.|++|++||+.+++    +.||...|..+++|+--.||++++.|+.|+.||++..+.++.+.||
T Consensus       155 r~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGH  234 (460)
T KOG0285|consen  155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGH  234 (460)
T ss_pred             EEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccc
Confidence            344455678899999999999999999984    6799999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~  226 (768)
                      -..|++++.+| .-+.|+++++|.++++||+++...+..+ +|..+|.++.+.|....+++++ |.+|++||++.++...
T Consensus       235 lS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~  313 (460)
T KOG0285|consen  235 LSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI  313 (460)
T ss_pred             cceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence            99999999999 8999999999999999999999988887 4999999999999888899999 4559999999988644


Q ss_pred             CCeEeecCCCCeEEEEEccCCCeEEEEEe----eCCcCCCCcceeEeecC-----------Cccc--CCCCeEEEecCCC
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSESSLTLATSP-----------GYWR--YPPPVICMAGAHS  289 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~s----vwdl~sg~~~~~L~t~~-----------G~~~--~p~~~V~l~d~~s  289 (768)
                         .+..|+..|++++.+|....+++++.    -|++..+.....+..++           |+..  --...+.+|+-.+
T Consensus       314 ---tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  314 ---TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             ---eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence               67889999999999999875544443    33433332222211111           1110  1235677777665


Q ss_pred             CCCCCcc-cccC----CCCCCceEEEEecCCCEEEEEec
Q 004203          290 SSHPGLA-EEVP----LITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       290 ~d~~~L~-~~~~----~~slpil~psFSpDG~rIv~~~~  323 (768)
                      +-..... +...    .....++..+|...|.+|+..-+
T Consensus       391 g~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea  429 (460)
T KOG0285|consen  391 GHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA  429 (460)
T ss_pred             CcccccccccccCCccccccceeEEeecccCceEEeccC
Confidence            5442222 1111    12233567788888888886444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1e-19  Score=198.85  Aligned_cols=218  Identities=22%  Similarity=0.291  Sum_probs=181.7

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      .+.+|..++.|.+.|.|+++|..+.    .+.+|+.+|..+.|+| |+..|++|++|+.+++||+.+......+.+|++.
T Consensus        76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY  155 (487)
T KOG0310|consen   76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY  155 (487)
T ss_pred             eecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence            5678999999999999999996664    5889999999999999 6678889999999999999999887789999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeE
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~  230 (768)
                      |++.+|+|.++.+++||+.||+|++||+++. ..+.++.|..+|.++.|-|.|..++++++..+++||+-++...  ...
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql--l~~  233 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL--LTS  233 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee--hhh
Confidence            9999999978889999999999999999987 7788899999999999999999999999999999999876652  234


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEE
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS  310 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~ps  310 (768)
                      ...|.+.|+|+.+..++..|++++.+..++-       -....+     ..+.               ...++.|++..+
T Consensus       234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV-------fd~t~~-----Kvv~---------------s~~~~~pvLsia  286 (487)
T KOG0310|consen  234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKV-------FDTTNY-----KVVH---------------SWKYPGPVLSIA  286 (487)
T ss_pred             hhcccceEEEEEeecCCceEeecccccceEE-------EEccce-----EEEE---------------eeecccceeeEE
Confidence            5559999999999999988887765333321       000111     1222               223567889999


Q ss_pred             EecCCCEEEEEec
Q 004203          311 FVRDDERISLQHT  323 (768)
Q Consensus       311 FSpDG~rIv~~~~  323 (768)
                      .|||++.++++-.
T Consensus       287 vs~dd~t~viGms  299 (487)
T KOG0310|consen  287 VSPDDQTVVIGMS  299 (487)
T ss_pred             ecCCCceEEEecc
Confidence            9999999999644

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.84  E-value=1.6e-18  Score=174.08  Aligned_cols=182  Identities=24%  Similarity=0.385  Sum_probs=157.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      ...++..+++++.++.|++|+....    .+..|...+..+.|++++++|++++.|+.|++||+++++.+..+..|...+
T Consensus        17 ~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i   96 (289)
T cd00200          17 FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV   96 (289)
T ss_pred             EcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcE
Confidence            3355788999999999999999865    467899999999999999999999999999999999988888999999899


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~  230 (768)
                      .++.|++ ++.++++++.|+.|++||+++++....+. |...+.+++|+|++.++++++ ++.|++||+++.+...   .
T Consensus        97 ~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~  172 (289)
T cd00200          97 SSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA---T  172 (289)
T ss_pred             EEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce---e
Confidence            9999999 78888888889999999999888877765 778999999999999999998 6679999998766533   4


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg  262 (768)
                      +..|...+.++.|+|+++.+++++.     +|+++.+
T Consensus       173 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             EecCccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence            5577789999999999988887764     5666543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.84  E-value=2.2e-19  Score=195.45  Aligned_cols=175  Identities=18%  Similarity=0.275  Sum_probs=150.9

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-------------
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-------------  140 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-------------  140 (768)
                      ...++..|++++.||.+++|+....   .|..|+++|.++.|+.+|.+|++++.|+++.+||..+|+             
T Consensus       243 Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l  322 (524)
T KOG0273|consen  243 WNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL  322 (524)
T ss_pred             ecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCcc
Confidence            3456899999999999999999765   678999999999999999999999999999999985542             


Q ss_pred             ----------------------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCC
Q 004203          141 ----------------------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFY  191 (768)
Q Consensus       141 ----------------------------~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~  191 (768)
                                                  ++.++.||.+.|.++.|+| .+.+|++++.|++++||......++..+ .|.
T Consensus       323 DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs  401 (524)
T KOG0273|consen  323 DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS  401 (524)
T ss_pred             ceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhc
Confidence                                        2345568999999999999 9999999999999999999888887775 588


Q ss_pred             CCeEEEEEcCCCC---------EEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          192 RPIASIAFHASGE---------LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       192 ~~V~svafSPDG~---------~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..|..+.|+|+|.         .|++++ +..|++||+..+....   .+..|..+|++|+|+|+|++++++..
T Consensus       402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~---~f~kH~~pVysvafS~~g~ylAsGs~  472 (524)
T KOG0273|consen  402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH---TLMKHQEPVYSVAFSPNGRYLASGSL  472 (524)
T ss_pred             cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE---eeccCCCceEEEEecCCCcEEEecCC
Confidence            8999999999763         566666 5669999999987644   67789999999999999998876653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.84  E-value=2.9e-19  Score=203.33  Aligned_cols=175  Identities=25%  Similarity=0.366  Sum_probs=150.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      ...++..+++++.|++|++||....     .+++|...|++++|+|+|+++++|+.|++|+|||+++++++..+.+|.+.
T Consensus       211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~  290 (456)
T KOG0266|consen  211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG  290 (456)
T ss_pred             ECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc
Confidence            4457789999999999999999432     58899999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCc--EEEEe-cCCC--CeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIGSR-DFYR--PIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~--~i~~l-~h~~--~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~  225 (768)
                      |..++|++ ++.+|++++.|+.|+|||+.++.  +...+ .+..  .++++.|+|++++|++++.|+ +++||+......
T Consensus       291 is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  291 ISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             eEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            99999999 99999999999999999999999  44544 2333  589999999999999999775 999999988764


Q ss_pred             cCCeEeecCCC---CeEEEEEccCCCeEEEEEe
Q 004203          226 SSPRIVLRTRR---SLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       226 ~~~~~l~~h~~---~V~sVaFSPDG~~LlaS~s  255 (768)
                      .   ....|..   .+.+..+++.++++++++.
T Consensus       370 ~---~~~~~~~~~~~~~~~~~~~~~~~i~sg~~  399 (456)
T KOG0266|consen  370 G---TYTGHSNLVRCIFSPTLSTGGKLIYSGSE  399 (456)
T ss_pred             e---eecccCCcceeEecccccCCCCeEEEEeC
Confidence            4   4455544   4555666888887777665

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.84  E-value=1.2e-19  Score=184.94  Aligned_cols=183  Identities=20%  Similarity=0.282  Sum_probs=150.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      ...+++.|+.++ ...|++||+.+.      ++.+|++.|+++.|..||+++++|++||++||||++...+.+.|+ |..
T Consensus        48 iTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~s  125 (311)
T KOG0315|consen   48 ITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNS  125 (311)
T ss_pred             EcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCC
Confidence            334566666554 458999999876      478999999999999999999999999999999999977777775 679


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE----------------------------------------------
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC----------------------------------------------  184 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~----------------------------------------------  184 (768)
                      +|+++..+| +...|+++..+|.|++||+....+                                              
T Consensus       126 pVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~  204 (311)
T KOG0315|consen  126 PVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE  204 (311)
T ss_pred             CcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc
Confidence            999999999 888999999999999999975422                                              


Q ss_pred             ---EEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe----
Q 004203          185 ---IGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE----  255 (768)
Q Consensus       185 ---i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s----  255 (768)
                         +..+ .|.+.+..+.++||+++|++++.++ ++||+.++.-.  ....+.+|..+++..+||-||+||+++++    
T Consensus       205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k--le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~  282 (311)
T KOG0315|consen  205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK--LELVLTGHQRWVWDCAFSADGEYLVTASSDHTA  282 (311)
T ss_pred             ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee--eEEEeecCCceEEeeeeccCccEEEecCCCCce
Confidence               0111 3667788999999999999999766 99999988721  23467789999999999999999998876    


Q ss_pred             -eCCcCCCCc
Q 004203          256 -VNDLDSSES  264 (768)
Q Consensus       256 -vwdl~sg~~  264 (768)
                       .|++..++.
T Consensus       283 rlW~~~~~k~  292 (311)
T KOG0315|consen  283 RLWDLSAGKE  292 (311)
T ss_pred             eecccccCce
Confidence             677765543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.84  E-value=4.1e-19  Score=201.42  Aligned_cols=233  Identities=18%  Similarity=0.244  Sum_probs=179.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      .+-+.+++.|++|++|++|++||...+    +|..|+..|+++.|+.+|+.+++.+-||+|+.||+..++..++|.....
T Consensus       356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p  435 (893)
T KOG0291|consen  356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP  435 (893)
T ss_pred             EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence            334568999999999999999999985    7999999999999999999999999999999999999999999976543


Q ss_pred             -CcEEEEEccCCCCEEEEEeCCC-eEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc
Q 004203          151 -TPWVVRFHPLNPTIIASGSLDH-EVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS  226 (768)
Q Consensus       151 -~V~sVafSP~dg~lLaSgS~Dg-tVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~  226 (768)
                       ...+++..| .|.++..|+.|. .|++|++++|+.+..+ +|+++|.+++|+|+|..|++++.|+ |++||+-......
T Consensus       436 ~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v  514 (893)
T KOG0291|consen  436 IQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV  514 (893)
T ss_pred             eeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence             466788888 899999999887 7999999999999886 6999999999999999999999655 9999996653322


Q ss_pred             CCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCC
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL  301 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~  301 (768)
                         ....+...+..++|+|||+.++++..     +||....   ....+.+|........       ...+ ........
T Consensus       515 ---Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~---~q~~~IdgrkD~~~gR-------~~~D-~~ta~~sa  580 (893)
T KOG0291|consen  515 ---ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA---VQVGSIDGRKDLSGGR-------KETD-RITAENSA  580 (893)
T ss_pred             ---eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc---eeeccccchhhccccc-------cccc-eeehhhcc
Confidence               34567789999999999999988765     4555422   2333333432211100       0001 11111112


Q ss_pred             CCCCceEEEEecCCCEEEEEe
Q 004203          302 ITPPFLRPSFVRDDERISLQH  322 (768)
Q Consensus       302 ~slpil~psFSpDG~rIv~~~  322 (768)
                      ..-++...+||+||+.|+++.
T Consensus       581 ~~K~Ftti~ySaDG~~IlAgG  601 (893)
T KOG0291|consen  581 KGKTFTTICYSADGKCILAGG  601 (893)
T ss_pred             cCCceEEEEEcCCCCEEEecC
Confidence            223445889999999999843

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=8.5e-20  Score=193.69  Aligned_cols=188  Identities=27%  Similarity=0.383  Sum_probs=166.7

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      ...++.+++++.|-++++||.++.     .+.+|...|.++.|-|.|.+|++++.|.+|+.|++.+|.++++|.+|...|
T Consensus       159 ~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewv  238 (406)
T KOG0295|consen  159 DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWV  238 (406)
T ss_pred             ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhE
Confidence            346799999999999999999874     578999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCC---------------CCEEEEEECCe-EE
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS---------------GELLAVASGHK-LY  215 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPD---------------G~~LatgSdd~-I~  215 (768)
                      +.++.+. ||.++++++.|.+|++|-+.++++...+ .|+.+|.+++|-|.               ++++.+++.|+ |+
T Consensus       239 r~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk  317 (406)
T KOG0295|consen  239 RMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK  317 (406)
T ss_pred             EEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence            9999999 9999999999999999999999887765 58889999999874               24888888555 99


Q ss_pred             EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004203          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (768)
Q Consensus       216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~  269 (768)
                      +||+.++..   .+.+.+|.++|+.++|+|.|+||++.+.     +||+...+....+.
T Consensus       318 ~wdv~tg~c---L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  318 IWDVSTGMC---LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             EEeccCCeE---EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence            999999986   4488999999999999999999998776     77777655544444

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.9e-19  Score=183.89  Aligned_cols=187  Identities=18%  Similarity=0.264  Sum_probs=159.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (768)
                      .+.......+++++-||++++||....     .+++|+..|.++.|++ +++.++++|.|++||+||...++.+.+|.||
T Consensus        67 ~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh  146 (311)
T KOG0277|consen   67 AWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH  146 (311)
T ss_pred             eecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence            344456677889999999999996543     4789999999999999 7788889999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCeEEEEEcCCC-CEEEEEECCe-EEEEEcCCCccc
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMREET  225 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s-g~~i~~l~h~~~V~svafSPDG-~~LatgSdd~-I~IWDl~t~~~~  225 (768)
                      ...|+...|+|...++++++|.|++++|||++. |+.+....|...+.++.|+.-. ..|++++-|+ |+.||+++-+. 
T Consensus       147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-  225 (311)
T KOG0277|consen  147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-  225 (311)
T ss_pred             ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-
Confidence            999999999999999999999999999999986 5666655688899999999844 5777777454 99999998775 


Q ss_pred             cCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCC
Q 004203          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSE  263 (768)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~  263 (768)
                       ..+.+.+|.-.|+.|.|||...-++++++      +|+....+
T Consensus       226 -pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  226 -PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             -cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence             45677889999999999999988888765      67665433

>PTZ00421 coronin; Provisional

Probab=99.81  E-value=1.4e-17  Score=190.94  Aligned_cols=173  Identities=14%  Similarity=0.211  Sum_probs=142.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (768)
                      ++..|++++.|++|++||+...           .+.+|...|.+++|+|++ ++|++++.|++|+|||+++++.+..+.+
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~  166 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC  166 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence            5678999999999999998643           367899999999999975 7999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCC-CeEEEEEcCCCCEEEEEE-----CCeEEEEEcC
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYR-PIASIAFHASGELLAVAS-----GHKLYIWRYN  220 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~-~V~svafSPDG~~LatgS-----dd~I~IWDl~  220 (768)
                      |...|.+++|+| ++.+|++++.|++|+|||+++++.+..+. |.+ .+..+.|.+++..|++++     ++.|++||++
T Consensus       167 h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        167 HSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             CCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            999999999999 99999999999999999999998877764 544 345788999988777654     3459999998


Q ss_pred             CCccccCCeEe-ecCCCCeEEEEEccCCCeEEEEEe
Q 004203          221 MREETSSPRIV-LRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       221 t~~~~~~~~~l-~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +.....  ... ......+....|+++++.+++++.
T Consensus       246 ~~~~p~--~~~~~d~~~~~~~~~~d~d~~~L~lggk  279 (493)
T PTZ00421        246 KMASPY--STVDLDQSSALFIPFFDEDTNLLYIGSK  279 (493)
T ss_pred             CCCCce--eEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence            765321  111 123445667789999998877663

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=1.9e-18  Score=198.92  Aligned_cols=231  Identities=18%  Similarity=0.220  Sum_probs=175.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCC--------------------------------C-----------------------
Q 004203           77 GRDARRGLASWVEAESLHHLRPKY--------------------------------C-----------------------  101 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t--------------------------------~-----------------------  101 (768)
                      .+.+|++|+++++|+.|++|.+..                                .                       
T Consensus       275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~  354 (712)
T KOG0283|consen  275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA  354 (712)
T ss_pred             eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence            456899999999999999998754                                0                       


Q ss_pred             ---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC
Q 004203          102 ---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH  172 (768)
Q Consensus       102 ---------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg  172 (768)
                               .+.||...|.++.||.+ ++|++++.|.+||+|++...+|+..|. |..-|+||+|+|.|.++|++|+.|+
T Consensus       355 f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~  432 (712)
T KOG0283|consen  355 FVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDG  432 (712)
T ss_pred             ccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeeccccc
Confidence                     14589999999999964 688999999999999999999999996 9999999999999999999999999


Q ss_pred             eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecC------CCCeEEEEEcc
Q 004203          173 EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRT------RRSLRAVHFHP  245 (768)
Q Consensus       173 tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h------~~~V~sVaFSP  245 (768)
                      .||||++...+.....+...-|++++|.|||+..++|+ +|.+++|+....+.... ..+..+      ...|+.++|.|
T Consensus       433 KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~-~~I~~~~~Kk~~~~rITG~Q~~p  511 (712)
T KOG0283|consen  433 KVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD-FHIRLHNKKKKQGKRITGLQFFP  511 (712)
T ss_pred             ceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe-eeEeeccCccccCceeeeeEecC
Confidence            99999999998888888889999999999999999999 56699999887665331 111111      23799999998


Q ss_pred             CCC-eEEEEEeeCCcCCCC--cceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEe
Q 004203          246 HAA-PLLLTAEVNDLDSSE--SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (768)
Q Consensus       246 DG~-~LlaS~svwdl~sg~--~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~  322 (768)
                      ... .+++++++-.++--+  ....+..+.|+..                         .. .....+|+.||+.|+.+.
T Consensus       512 ~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-------------------------~~-SQ~~Asfs~Dgk~IVs~s  565 (712)
T KOG0283|consen  512 GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-------------------------TS-SQISASFSSDGKHIVSAS  565 (712)
T ss_pred             CCCCeEEEecCCCceEEEeccchhhhhhhccccc-------------------------CC-cceeeeEccCCCEEEEee
Confidence            654 366665543333111  1222222233211                         11 122578999999999976


Q ss_pred             cCCCCCcceEEeccCCCc
Q 004203          323 TEHDSGATRTQQSLRSSS  340 (768)
Q Consensus       323 ~d~~~Gs~~~~~~~~ss~  340 (768)
                      .|.    -.+++..++..
T Consensus       566 eDs----~VYiW~~~~~~  579 (712)
T KOG0283|consen  566 EDS----WVYIWKNDSFN  579 (712)
T ss_pred             cCc----eEEEEeCCCCc
Confidence            433    34666665444

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.6e-18  Score=184.06  Aligned_cols=175  Identities=17%  Similarity=0.271  Sum_probs=158.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      ....+..|+|++.|.+|+.|+..++    ++.+|.+-|..++.+.||.+++++++|.+|++|-+.++++...+++|..+|
T Consensus       201 f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v  280 (406)
T KOG0295|consen  201 FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV  280 (406)
T ss_pred             EEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence            3445799999999999999999987    799999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccC--------------CCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEE
Q 004203          153 WVVRFHPL--------------NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYI  216 (768)
Q Consensus       153 ~sVafSP~--------------dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~I  216 (768)
                      .+++|.|.              .+.++.++++|++|++||+.++.++.++ +|...|..++|+|.|++|+++.||+ +++
T Consensus       281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv  360 (406)
T KOG0295|consen  281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV  360 (406)
T ss_pred             EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence            99999872              2469999999999999999999999886 5999999999999999999999887 999


Q ss_pred             EEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ||+++.++..   .+..|..-|+++.|+.+-.++++++
T Consensus       361 wdl~~~~cmk---~~~ah~hfvt~lDfh~~~p~VvTGs  395 (406)
T KOG0295|consen  361 WDLKNLQCMK---TLEAHEHFVTSLDFHKTAPYVVTGS  395 (406)
T ss_pred             EEeccceeee---ccCCCcceeEEEecCCCCceEEecc
Confidence            9999998754   5567889999999999988655443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.80  E-value=3.5e-17  Score=198.05  Aligned_cols=178  Identities=17%  Similarity=0.263  Sum_probs=148.9

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----C-------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----P-------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL  142 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~-------L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l  142 (768)
                      .+...++..+++++.|+.|++|+....    .       ...+...|.+++|++ ++.+|++++.|++|++||+.+++.+
T Consensus       489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~  568 (793)
T PLN00181        489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV  568 (793)
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            344457889999999999999997531    0       012356789999998 5889999999999999999999999


Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEc-CCCCEEEEEECC-eEEEEEcC
Q 004203          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH-ASGELLAVASGH-KLYIWRYN  220 (768)
Q Consensus       143 ~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafS-PDG~~LatgSdd-~I~IWDl~  220 (768)
                      ..+.+|.+.|++++|+|.++.+|++|+.|++|++||+++++++..+.+...+.++.|+ ++|.+|++|+.+ .|++||++
T Consensus       569 ~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~  648 (793)
T PLN00181        569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLR  648 (793)
T ss_pred             EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            9999999999999999767899999999999999999999988888777889999995 578999999854 59999998


Q ss_pred             CCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +...  ....+.+|...|.++.|. ++.++++++.
T Consensus       649 ~~~~--~~~~~~~h~~~V~~v~f~-~~~~lvs~s~  680 (793)
T PLN00181        649 NPKL--PLCTMIGHSKTVSYVRFV-DSSTLVSSST  680 (793)
T ss_pred             CCCc--cceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence            7653  123566899999999997 6777776654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.79  E-value=3.2e-19  Score=191.44  Aligned_cols=190  Identities=17%  Similarity=0.215  Sum_probs=160.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-CCcE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPW  153 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-g~V~  153 (768)
                      ..+++|++++..|.+.+|+....    .++.|...|.++.|+++|.++++|..+|.||+|+..-. .++.++.|. ..|+
T Consensus       106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIR  184 (464)
T KOG0284|consen  106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIR  184 (464)
T ss_pred             CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhh
Confidence            57899999999999999999765    36799999999999999999999999999999997643 455566555 8999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEe
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV  231 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l  231 (768)
                      +++|+| +...|++++.|++|+|||....+..+.+ +|.-.|.+++|+|...+|+++++|. |++||.+++.++.   .+
T Consensus       185 dlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~---tl  260 (464)
T KOG0284|consen  185 DLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA---TL  260 (464)
T ss_pred             eeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh---hh
Confidence            999999 8888999999999999999987765554 6888999999999999999999777 9999999999765   78


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc
Q 004203          232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR  276 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~  276 (768)
                      ..|+..|..+.|+|++.+|++.+.     +.|++   ....+.+..+|.+
T Consensus       261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR---~mkEl~~~r~Hkk  307 (464)
T KOG0284|consen  261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR---TMKELFTYRGHKK  307 (464)
T ss_pred             hhccceEEEEEEcCCCCeeEEccCCceEEEEehh---HhHHHHHhhcchh
Confidence            889999999999999998888776     33444   3344555556543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.79  E-value=6.7e-19  Score=192.30  Aligned_cols=217  Identities=16%  Similarity=0.216  Sum_probs=166.8

Q ss_pred             CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC-CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 004203          102 PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (768)
Q Consensus       102 ~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~t-g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (768)
                      .+.+|+..|+++.|.| .+.+|++++.|+.|+||++-. ++++++|.||..+|..++|+. ++..+++++.|+.|++||+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeecc
Confidence            5679999999999999 999999999999999999876 899999999999999999999 9999999999999999999


Q ss_pred             CCCcEEEEecCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe--
Q 004203          180 STAECIGSRDFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--  255 (768)
Q Consensus       180 ~sg~~i~~l~h~~~V~svafSPDG-~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s--  255 (768)
                      ++|+++..+.....++++.|+||+ +.+++|+ +++|+.||+++++.++   ....|-..|..+.|-++|+++++++.  
T Consensus       288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdk  364 (503)
T KOG0282|consen  288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDK  364 (503)
T ss_pred             ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCc
Confidence            999999999999999999999999 5555555 5669999999999766   56778899999999999999999887  


Q ss_pred             ---eCCcCCCCcceeEeecCCcc-----cCC----------CCeEEEecCCCCCCCCcccccCCCCCCce--EEEEecCC
Q 004203          256 ---VNDLDSSESSLTLATSPGYW-----RYP----------PPVICMAGAHSSSHPGLAEEVPLITPPFL--RPSFVRDD  315 (768)
Q Consensus       256 ---vwdl~sg~~~~~L~t~~G~~-----~~p----------~~~V~l~d~~s~d~~~L~~~~~~~slpil--~psFSpDG  315 (768)
                         +|+.+..-.........-|.     .+|          .+.+.+..+...........-.+...+.+  .+.|||||
T Consensus       365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG  444 (503)
T KOG0282|consen  365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG  444 (503)
T ss_pred             cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence               55444221111111111110     011          12222222333333333333334444555  68999999


Q ss_pred             CEEEEEe
Q 004203          316 ERISLQH  322 (768)
Q Consensus       316 ~rIv~~~  322 (768)
                      +.|+.+-
T Consensus       445 ~~l~SGd  451 (503)
T KOG0282|consen  445 RTLCSGD  451 (503)
T ss_pred             CeEEeec
Confidence            9999743

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.4e-17  Score=171.70  Aligned_cols=174  Identities=19%  Similarity=0.258  Sum_probs=147.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-C-------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--CeEEEEEecCCC
Q 004203           81 RRGLASWVEAESLHHLRPKYC-P-------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--GSCLKVLHGHRR  150 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~-~-------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t--g~~l~~l~gH~g  150 (768)
                      +..|++++.|+.|++|+.... .       -.+|++.|.+++|+|.|++|+++|.|.++.||.-..  .+++.++.||..
T Consensus        27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn  106 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN  106 (312)
T ss_pred             ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence            557999999999999999832 1       237999999999999999999999999999997654  478899999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE---EEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccc
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI---GSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET  225 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i---~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~  225 (768)
                      .|.+++|++ +|.+||++++|+.|.||.+..+...   ..+ .|...|..+.|+|...+|++++ |++|++|+-.....-
T Consensus       107 EVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW  185 (312)
T KOG0645|consen  107 EVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDW  185 (312)
T ss_pred             ceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCe
Confidence            999999999 9999999999999999999865543   333 4888999999999999999999 556999987643322


Q ss_pred             cCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .....+.+|...|.++.|++.|..++++..
T Consensus       186 ~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd  215 (312)
T KOG0645|consen  186 ECVQTLDGHENTVWSLAFDNIGSRLVSCSD  215 (312)
T ss_pred             eEEEEecCccceEEEEEecCCCceEEEecC
Confidence            223467788889999999999988887765

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=6.7e-18  Score=188.44  Aligned_cols=176  Identities=16%  Similarity=0.304  Sum_probs=159.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCcEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWV  154 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~g~V~s  154 (768)
                      .+..+++|++|..|++++..+.    +|..|.+-|.+++.+|...+++++|+|.+||+||.+.+ .+.++|.||..-|.+
T Consensus        66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq  145 (794)
T KOG0276|consen   66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ  145 (794)
T ss_pred             ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence            4678999999999999999987    58899999999999999999999999999999998764 688999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCC--CEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASG--ELLAVASGHK-LYIWRYNMREETSSPRI  230 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG--~~LatgSdd~-I~IWDl~t~~~~~~~~~  230 (768)
                      ++|+|.|.+.++|++.|++|++|.+.+..+..++ +|...|++++|-+-|  .+|++|+||. |+|||+++..+++   .
T Consensus       146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~---T  222 (794)
T KOG0276|consen  146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ---T  222 (794)
T ss_pred             EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH---H
Confidence            9999999999999999999999999998888776 599999999998755  5999999877 9999999999876   7


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAEVND  258 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~svwd  258 (768)
                      +.+|...|..+.|+|.-..+++++++..
T Consensus       223 LeGHt~Nvs~v~fhp~lpiiisgsEDGT  250 (794)
T KOG0276|consen  223 LEGHTNNVSFVFFHPELPIIISGSEDGT  250 (794)
T ss_pred             hhcccccceEEEecCCCcEEEEecCCcc
Confidence            8899999999999999996666665333

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.78  E-value=6.7e-17  Score=195.56  Aligned_cols=174  Identities=16%  Similarity=0.189  Sum_probs=145.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      .+..|++++.|+.|++||..++    .+.+|.+.|++++|+| ++.+|++|+.|++|++||+++++.+..+..+ ..|.+
T Consensus       544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~  622 (793)
T PLN00181        544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC  622 (793)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence            4678999999999999999876    4779999999999997 8899999999999999999999998888765 57899


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcc---ccCC
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE---TSSP  228 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~-l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~---~~~~  228 (768)
                      +.|++.++.+|++|+.|+.|++||+++++ .+.. ..|...|.++.|. ++.+|++++. +.|++||++....   ....
T Consensus       623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l  701 (793)
T PLN00181        623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL  701 (793)
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence            99976589999999999999999998865 3333 4688899999997 6788888885 4599999975421   1122


Q ss_pred             eEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..+.+|...+..+.|+|++.+|++++.
T Consensus       702 ~~~~gh~~~i~~v~~s~~~~~lasgs~  728 (793)
T PLN00181        702 HSFMGHTNVKNFVGLSVSDGYIATGSE  728 (793)
T ss_pred             EEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence            356678889999999999998777765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.78  E-value=2.9e-17  Score=164.98  Aligned_cols=172  Identities=27%  Similarity=0.421  Sum_probs=150.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      .+..++++..++.|.+||..+.    .+..|...|.+++|+|+++++++++.|+.|++||+++++.+..+..|...+.++
T Consensus       104 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~  183 (289)
T cd00200         104 DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV  183 (289)
T ss_pred             CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceE
Confidence            4566777777999999999854    466799999999999999999998889999999999999999999999999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeec
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      .|+| +++.+++++.|+.|++||+++++.+..+ .+...+.+++|+|++.++++++ ++.|++||+.+.+...   .+..
T Consensus       184 ~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~---~~~~  259 (289)
T cd00200         184 AFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ---TLSG  259 (289)
T ss_pred             EECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE---Eccc
Confidence            9999 8888888888999999999998888887 6888999999999998998888 6779999998766533   4457


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe
Q 004203          234 TRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |...|.++.|+|+++++++++.
T Consensus       260 ~~~~i~~~~~~~~~~~l~~~~~  281 (289)
T cd00200         260 HTNSVTSLAWSPDGKRLASGSA  281 (289)
T ss_pred             cCCcEEEEEECCCCCEEEEecC
Confidence            8889999999999997777654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.78  E-value=1.2e-17  Score=177.01  Aligned_cols=187  Identities=18%  Similarity=0.231  Sum_probs=164.7

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      .++..-+|+++++|+.|+-||+++.+    +.||-..|.|++..|.-+.|++|+.|.+++|||+++...+..+.||+.+|
T Consensus       201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V  280 (460)
T KOG0285|consen  201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV  280 (460)
T ss_pred             ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc
Confidence            34567889999999999999999874    56999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEe
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIV  231 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l  231 (768)
                      ..+.+.| -...+++|+.|++|++||++.|+...++ .|...+.+++.+|....+++++.|.|+-|++..+....   .+
T Consensus       281 ~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~---nl  356 (460)
T KOG0285|consen  281 ASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQ---NL  356 (460)
T ss_pred             eeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhh---cc
Confidence            9999999 6667899999999999999999887775 57789999999999999999999999999999988755   47


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203          232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L  268 (768)
                      .+|...|+.++...||- +++++.     .||.+++..-+..
T Consensus       357 sgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  357 SGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             ccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccc
Confidence            88999999999999986 444443     7788776555544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.78  E-value=5.9e-18  Score=185.75  Aligned_cols=218  Identities=18%  Similarity=0.182  Sum_probs=162.4

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC--------CC-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE---
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC--------PL-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK---  143 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~--------~L-~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~---  143 (768)
                      +....+.++++|+-|-.|++||....        +| ......|.++.|++.|..|++.+.....+|+|.+..+...   
T Consensus       174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~K  253 (641)
T KOG0772|consen  174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSK  253 (641)
T ss_pred             eecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeec
Confidence            34567899999999999999999743        22 3456689999999999999999999999999976544332   


Q ss_pred             ---------EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE-EEec------CCCCeEEEEEcCCCCEEE
Q 004203          144 ---------VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-GSRD------FYRPIASIAFHASGELLA  207 (768)
Q Consensus       144 ---------~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i-~~l~------h~~~V~svafSPDG~~La  207 (768)
                               .-+||...+++.+|+|+....+++++.|+++||||+...+.+ ..+.      ..-+++.++|++||++||
T Consensus       254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA  333 (641)
T KOG0772|consen  254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA  333 (641)
T ss_pred             cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence                     236899999999999988899999999999999999875433 2332      233788999999999999


Q ss_pred             EEECC-eEEEEEcCCCccccCCeEeecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCC
Q 004203          208 VASGH-KLYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPP  279 (768)
Q Consensus       208 tgSdd-~I~IWDl~t~~~~~~~~~l~~h~~--~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~  279 (768)
                      +|+.+ .|++||...............|..  .|++|.||+||++|++-+.     +||++....  .|....|.     
T Consensus       334 agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk--pL~~~tgL-----  406 (641)
T KOG0772|consen  334 AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK--PLNVRTGL-----  406 (641)
T ss_pred             hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc--chhhhcCC-----
Confidence            99954 599999876654322223344655  8999999999999887654     666653211  11111111     


Q ss_pred             CeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203          280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (768)
Q Consensus       280 ~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~  321 (768)
                                           ....+...++||||.+.|+.+
T Consensus       407 ---------------------~t~~~~tdc~FSPd~kli~TG  427 (641)
T KOG0772|consen  407 ---------------------PTPFPGTDCCFSPDDKLILTG  427 (641)
T ss_pred             ---------------------CccCCCCccccCCCceEEEec
Confidence                                 112344478999999988864

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=6e-18  Score=192.00  Aligned_cols=173  Identities=21%  Similarity=0.299  Sum_probs=157.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~-------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (768)
                      ..-..+++++.|.++++|++...             ....|...|++++++|+.++|++||.|++.+||+++......++
T Consensus       422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL  501 (775)
T KOG0319|consen  422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL  501 (775)
T ss_pred             cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe
Confidence            34577999999999999998752             12379999999999999999999999999999999999999999


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004203          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (768)
Q Consensus       146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~  223 (768)
                      .||+..|++|.|+| ..++++++|.|++|+||.+.+..|++++. |...|..+.|-.+|+.|++++.++ |++|++.+.+
T Consensus       502 sGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  502 SGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             eCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence            99999999999999 88999999999999999999999999986 999999999999999999988655 9999999999


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +..   .+..|++.|++++-+|....+++++.
T Consensus       581 C~~---tlD~H~DrvWaL~~~~~~~~~~tgg~  609 (775)
T KOG0319|consen  581 CEM---TLDAHNDRVWALSVSPLLDMFVTGGG  609 (775)
T ss_pred             hhh---hhhhccceeEEEeecCccceeEecCC
Confidence            765   78899999999999999996666554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.77  E-value=8.8e-18  Score=183.05  Aligned_cols=172  Identities=20%  Similarity=0.295  Sum_probs=152.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      +...+++.+.|+.|+++.+...    ++.+|.+.|.++.|+|.|.+|+++|.|++++||+.....+...|.+|...|+.+
T Consensus       328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~  407 (524)
T KOG0273|consen  328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTI  407 (524)
T ss_pred             cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeE
Confidence            4567888899999999988644    688999999999999999999999999999999999999999999999999999


Q ss_pred             EEccC--------CCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccc
Q 004203          156 RFHPL--------NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREET  225 (768)
Q Consensus       156 afSP~--------dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~  225 (768)
                      .|+|.        .+..+++++.|++|++||+..+.++..+ +|..+|++++|+|+|++|++|+-+ .|++|+.++++..
T Consensus       408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~  487 (524)
T KOG0273|consen  408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV  487 (524)
T ss_pred             eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee
Confidence            99984        2458999999999999999999999997 899999999999999999999955 5999999998753


Q ss_pred             cCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .    .......|..++|+-+|.+|.+..+
T Consensus       488 ~----s~~~~~~Ifel~Wn~~G~kl~~~~s  513 (524)
T KOG0273|consen  488 K----SYQGTGGIFELCWNAAGDKLGACAS  513 (524)
T ss_pred             E----eecCCCeEEEEEEcCCCCEEEEEec
Confidence            3    4455677999999999998776654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.77  E-value=2.8e-18  Score=187.52  Aligned_cols=144  Identities=23%  Similarity=0.328  Sum_probs=131.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      .+..|++++.|+.|++|++...     ++.+|..+|.+++|+.+|..|++++.|+.|++||++||+++..|. -...+++
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~c  304 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTC  304 (503)
T ss_pred             eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCcee
Confidence            5778899999999999999762     689999999999999999999999999999999999999999886 3567889


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~  224 (768)
                      +.|+|++.+.+++|..|+.|+.||+++++.++.+. |-+.|..+.|-++|+.+++.++++ ++||+.+....
T Consensus       305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~  376 (503)
T KOG0282|consen  305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP  376 (503)
T ss_pred             eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence            99999666999999999999999999999888875 678999999999999999999877 99999887643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.4e-16  Score=167.19  Aligned_cols=177  Identities=20%  Similarity=0.326  Sum_probs=149.4

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEeCCCCeEEEEEecC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~l~gH  148 (768)
                      ....+++..+++.++|.++++||...+    ++..++-.|..+.|......++.++.  |.+||..++.+.+.++.|.||
T Consensus        20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH   99 (311)
T KOG1446|consen   20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGH   99 (311)
T ss_pred             EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCC
Confidence            345578999999999999999999987    35567778999999987777777766  999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccC
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSS  227 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~  227 (768)
                      ...|..++.+| .++.++|++.|++|++||++..+++..+..... ..++|+|+|-++|++.+. .|++||++.-...  
T Consensus       100 ~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg--  175 (311)
T KOG1446|consen  100 KKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDKG--  175 (311)
T ss_pred             CceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCCC--
Confidence            99999999999 779999999999999999999998887764443 457899999999999976 5999999986542  


Q ss_pred             CeEee----cCCCCeEEEEEccCCCeEEEEEe
Q 004203          228 PRIVL----RTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       228 ~~~l~----~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |+...    ......+.+.|||||++++.+..
T Consensus       176 PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~  207 (311)
T KOG1446|consen  176 PFTTFSITDNDEAEWTDLEFSPDGKSILLSTN  207 (311)
T ss_pred             CceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence            22222    23567899999999999998875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=6.9e-17  Score=166.53  Aligned_cols=153  Identities=28%  Similarity=0.507  Sum_probs=130.7

Q ss_pred             CCCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCC---CeEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCeEE
Q 004203          101 CPLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQT---GSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVR  175 (768)
Q Consensus       101 ~~L~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~t---g~~l~~l-~gH~g~V~sVafSP~dg~lLaSgS~DgtVr  175 (768)
                      .++++|++.|..++|+|- |..||+|+.|+.|++|+...   ..+...+ .+|+..|++++|+| .+++|+++|.|.++.
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVV   86 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEE
Confidence            357899999999999996 88999999999999999885   3444444 47999999999999 999999999999999


Q ss_pred             EEECCCC--cEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203          176 LWNASTA--ECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       176 LWDl~sg--~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Ll  251 (768)
                      ||.-..+  +++.++ +|+..|.+++|+++|.+||+++.|+ |.||.+....+......+..|...|..+.|||... |+
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL  165 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LL  165 (312)
T ss_pred             EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-ee
Confidence            9987765  455555 5999999999999999999999777 99999987666555567788999999999999888 44


Q ss_pred             EEEe
Q 004203          252 LTAE  255 (768)
Q Consensus       252 aS~s  255 (768)
                      ++++
T Consensus       166 ~S~S  169 (312)
T KOG0645|consen  166 FSCS  169 (312)
T ss_pred             EEec
Confidence            5544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=1.9e-17  Score=167.87  Aligned_cols=191  Identities=22%  Similarity=0.247  Sum_probs=157.7

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      ..-++.+.++++.|++|++|+...+    ++.+|...|.+++.+.|...|++|+.|..|.+||+++|+.++.|.+|.+.|
T Consensus        25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqV  104 (307)
T KOG0316|consen   25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQV  104 (307)
T ss_pred             EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccccee
Confidence            3457889999999999999999877    578999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCC--cEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCC
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP  228 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg--~~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~  228 (768)
                      +.++|+. +...+++|+.|.++++||-++.  ++++.+. ....|.++..+  +..|+.|+ ||+++.||++.+....  
T Consensus       105 NtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s--  179 (307)
T KOG0316|consen  105 NTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS--  179 (307)
T ss_pred             eEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh--
Confidence            9999999 9999999999999999999874  5677665 56788888775  55677777 6779999999997633  


Q ss_pred             eEeecCCCCeEEEEEccCCCeEEEEEeeCCcC--CCCcceeEeecCCcc
Q 004203          229 RIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD--SSESSLTLATSPGYW  275 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~--sg~~~~~L~t~~G~~  275 (768)
                       ..  -..+|+++.|++||+..++++..-.++  ..+....|..-.||.
T Consensus       180 -Dy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk  225 (307)
T KOG0316|consen  180 -DY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK  225 (307)
T ss_pred             -hh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc
Confidence             22  345999999999999888877633333  122234444455554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.76  E-value=1.3e-15  Score=167.91  Aligned_cols=192  Identities=17%  Similarity=0.202  Sum_probs=154.3

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEeCCCCeEEEE
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKV  144 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~  144 (768)
                      ...-.+..+.++++|...|+|++||....      +++.-.++|.+++|+.|+++|+..++  +.-.+++-.++|..+..
T Consensus        63 tVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGe  142 (603)
T KOG0318|consen   63 TVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGE  142 (603)
T ss_pred             EEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccce
Confidence            33335567889999999999999998763      46677899999999999999987765  33344444446788899


Q ss_pred             EecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC
Q 004203          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR  222 (768)
Q Consensus       145 l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~  222 (768)
                      +.||...|+++.|-|...-.+++++.|++|-+|+-.--+...++ .|..-|+++.|+|||+++++.+ |++|.+||-.++
T Consensus       143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence            99999999999999966668999999999999986555555554 4778999999999999999887 566999999999


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCc
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSES  264 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~  264 (768)
                      +.......-..|++.|.+++|+||+..+++.+.     +||+.....
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl  269 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL  269 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence            876622223479999999999999999988654     888875543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.75  E-value=4.6e-17  Score=173.85  Aligned_cols=181  Identities=19%  Similarity=0.266  Sum_probs=160.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC---------------
Q 004203           81 RRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---------------  137 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~--------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~---------------  137 (768)
                      ...+++++.|+++++|..+.+.        -.||++.|-++...+||..+++|+.|.+|+||+..               
T Consensus       159 ~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr  238 (423)
T KOG0313|consen  159 SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR  238 (423)
T ss_pred             cceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh
Confidence            4569999999999999988652        24999999999999999999999999999999931               


Q ss_pred             ----------CCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEE
Q 004203          138 ----------TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA  207 (768)
Q Consensus       138 ----------tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~La  207 (768)
                                ++.++.++.||+++|.+|.|++  ...+++++.|.+|+.||+.++.++.++.....+++++.+|..++|+
T Consensus       239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~  316 (423)
T KOG0313|consen  239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLA  316 (423)
T ss_pred             hhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceee
Confidence                      1234667889999999999987  7789999999999999999999999998899999999999999999


Q ss_pred             EEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCC
Q 004203          208 VASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSE  263 (768)
Q Consensus       208 tgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~  263 (768)
                      +|+.+. |++||.+++........+.+|...|.++.|+|...+++++++      +||+|+..
T Consensus       317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            999776 999999998766556778999999999999999999988876      88888644

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.75  E-value=3.8e-17  Score=192.22  Aligned_cols=179  Identities=21%  Similarity=0.279  Sum_probs=149.3

Q ss_pred             EEecCCCEEEEEe--CCCeEEEEeCCC----------------CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 004203           76 AGRDARRGLASWV--EAESLHHLRPKY----------------CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ  137 (768)
Q Consensus        76 a~~d~g~~LvSgs--~DgsIrlWd~~t----------------~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~  137 (768)
                      ....++.++++|+  .|+.+++|+.+.                ++...|.+.|+|+.|+|||++||+|++|+.|.||+..
T Consensus        20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~   99 (942)
T KOG0973|consen   20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERA   99 (942)
T ss_pred             EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeec
Confidence            3456788888888  888889998762                1356799999999999999999999999999999876


Q ss_pred             C------------------CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEE
Q 004203          138 T------------------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIA  198 (768)
Q Consensus       138 t------------------g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~sva  198 (768)
                      .                  .++...+.+|...|..+.|+| ++.++++++.|++|.|||.++.+.++.+ +|.+.|..+.
T Consensus       100 ~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs  178 (942)
T KOG0973|consen  100 EIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS  178 (942)
T ss_pred             ccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceE
Confidence            2                  146788999999999999999 9999999999999999999999888776 5999999999


Q ss_pred             EcCCCCEEEEEECCe-EEEEEcCCCccc---cCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          199 FHASGELLAVASGHK-LYIWRYNMREET---SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       199 fSPDG~~LatgSdd~-I~IWDl~t~~~~---~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |+|-|++|++-+||+ |++|++.+-...   ..++........++.+.|||||++|++...
T Consensus       179 ~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  179 WDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             ECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            999999999999877 999997653322   222222233567899999999998887543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=7.3e-17  Score=185.42  Aligned_cols=192  Identities=23%  Similarity=0.319  Sum_probs=162.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      ...-..+-.++||++|-+|++|+..+.    +|.||-+-|..+.|++.-.+|+|+|+|.+|+||+..+++++..+.||..
T Consensus        57 v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH  136 (1202)
T KOG0292|consen   57 VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH  136 (1202)
T ss_pred             eeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence            334456778899999999999999876    6889999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc---------------------------EE-E-Ee-cCCCCeEEEEEc
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---------------------------CI-G-SR-DFYRPIASIAFH  200 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~---------------------------~i-~-~l-~h~~~V~svafS  200 (768)
                      .|.|.+|+| ..++++|+|.|.+||+||+..-+                           .+ + .+ +|...|+-++|+
T Consensus       137 YVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh  215 (1202)
T KOG0292|consen  137 YVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH  215 (1202)
T ss_pred             EEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence            999999999 99999999999999999985210                           01 1 11 488899999999


Q ss_pred             CCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203          201 ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       201 PDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L  268 (768)
                      |.-.+|++|+||+ |++|.+...+... .-...+|.+.|.++-|+|....+++.++     +||+.......++
T Consensus       216 pTlpliVSG~DDRqVKlWrmnetKaWE-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  216 PTLPLIVSGADDRQVKLWRMNETKAWE-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             CCcceEEecCCcceeeEEEecccccee-ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence            9999999999988 9999987655422 3356789999999999999998888776     7777654444444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=6.2e-18  Score=194.77  Aligned_cols=148  Identities=21%  Similarity=0.333  Sum_probs=129.4

Q ss_pred             CCC-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--------------------------------C---------
Q 004203          102 PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--------------------------------G---------  139 (768)
Q Consensus       102 ~L~-gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t--------------------------------g---------  139 (768)
                      .+. .|.+.|.++.||+||+|||+|+.|+.|+||.+..                                .         
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            355 8999999999999999999999999999998644                                0         


Q ss_pred             -------------------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEc
Q 004203          140 -------------------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH  200 (768)
Q Consensus       140 -------------------~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafS  200 (768)
                                         +++..|+||.+.|..+.||.  .++|++++.|+|||||++...+|+..|.|.+.|+|++|+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence                               12344579999999999997  789999999999999999999999999999999999999


Q ss_pred             C-CCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          201 A-SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       201 P-DG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      | |.+++++|+ |++|+||++...+...    ...-...|++++|.|||++.++++-
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~----W~Dl~~lITAvcy~PdGk~avIGt~  471 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVD----WNDLRDLITAVCYSPDGKGAVIGTF  471 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEe----ehhhhhhheeEEeccCCceEEEEEe
Confidence            9 678999999 8889999998876533    4455689999999999998887653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.74  E-value=3.2e-18  Score=180.58  Aligned_cols=204  Identities=15%  Similarity=0.250  Sum_probs=165.8

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      .-+...+++|..|.+|++||....    .|.||++.|.|+.|.  .+.|++|+.|.+|++||.++|++++++.+|...|.
T Consensus       204 QYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVL  281 (499)
T KOG0281|consen  204 QYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVL  281 (499)
T ss_pred             EecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeE
Confidence            346778999999999999999864    689999999999996  67999999999999999999999999999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE----ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCC
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS----RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSP  228 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~----l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~  228 (768)
                      .+.|+.   .++++++.|.++.+||+.+...+..    .+|...|+.+.|+  .++++++++|. |++|++.+.+.+.  
T Consensus       282 hlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR--  354 (499)
T KOG0281|consen  282 HLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR--  354 (499)
T ss_pred             EEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh--
Confidence            999965   8999999999999999988653322    3689999999996  45999999766 9999999998766  


Q ss_pred             eEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc---C---------CCCeEEEecCCCCC
Q 004203          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y---------PPPVICMAGAHSSS  291 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~---~---------p~~~V~l~d~~s~d  291 (768)
                       .+.+|+..|.++++  .|++++++++     +|++..|...+.|..+..-..   |         =...+.+|+.+.+.
T Consensus       355 -tl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  355 -TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             -hhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEeccccc
Confidence             78899999999988  6776666555     777776666555543322211   0         12578888887666


Q ss_pred             CC
Q 004203          292 HP  293 (768)
Q Consensus       292 ~~  293 (768)
                      +.
T Consensus       432 dp  433 (499)
T KOG0281|consen  432 DP  433 (499)
T ss_pred             CC
Confidence            54

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.1e-16  Score=177.90  Aligned_cols=219  Identities=19%  Similarity=0.206  Sum_probs=176.3

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE-EecCCCC
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC----PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRT  151 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~g-H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~g~  151 (768)
                      ...+..|+.|..+|.|.+||....    .+.+ |...|-+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...
T Consensus       226 s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe  303 (484)
T KOG0305|consen  226 SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE  303 (484)
T ss_pred             CCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccce
Confidence            346899999999999999998765    4666 99999999999  77899999999999999998776544 8899999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCC-CCEEEEEEC--C-eEEEEEcCCCcccc
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHAS-GELLAVASG--H-KLYIWRYNMREETS  226 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPD-G~~LatgSd--d-~I~IWDl~t~~~~~  226 (768)
                      |..+.|++ |+.++|+|+.|+.+.|||....+++.. ..|...|..++|+|- ..+||+|++  | .|++||..++....
T Consensus       304 VCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~  382 (484)
T KOG0305|consen  304 VCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID  382 (484)
T ss_pred             eeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec
Confidence            99999999 999999999999999999977666555 579999999999994 558888873  3 39999999887644


Q ss_pred             CCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCc
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPF  306 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpi  306 (768)
                          .......|.+|.|++..+-|+++-.                     |+...+.+|...+   ........+...++
T Consensus       383 ----~vdtgsQVcsL~Wsk~~kEi~sthG---------------------~s~n~i~lw~~ps---~~~~~~l~gH~~RV  434 (484)
T KOG0305|consen  383 ----SVDTGSQVCSLIWSKKYKELLSTHG---------------------YSENQITLWKYPS---MKLVAELLGHTSRV  434 (484)
T ss_pred             ----ccccCCceeeEEEcCCCCEEEEecC---------------------CCCCcEEEEeccc---cceeeeecCCccee
Confidence                4557789999999999988877643                     1223445555433   23333444556678


Q ss_pred             eEEEEecCCCEEEEEecCCCC
Q 004203          307 LRPSFVRDDERISLQHTEHDS  327 (768)
Q Consensus       307 l~psFSpDG~rIv~~~~d~~~  327 (768)
                      +..+.||||..|+.+-.|+++
T Consensus       435 l~la~SPdg~~i~t~a~DETl  455 (484)
T KOG0305|consen  435 LYLALSPDGETIVTGAADETL  455 (484)
T ss_pred             EEEEECCCCCEEEEecccCcE
Confidence            889999999999987666644

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.73  E-value=3.9e-16  Score=160.36  Aligned_cols=212  Identities=17%  Similarity=0.226  Sum_probs=172.7

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (768)
                      ...++.+|++++.|+++.+|+++..      ...+|.+.|-.++|+| ....|++++.|.+|++||++.+++...+....
T Consensus        28 wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~  107 (313)
T KOG1407|consen   28 WNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG  107 (313)
T ss_pred             EcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC
Confidence            3357889999999999999999865      3579999999999999 77899999999999999999999999888766


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSP  228 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~  228 (768)
                      +.+. +.|+| ++.+++.+.+|..|.+.|.++.+.....+....++.++|+.++.+++...+ |.|.|..+..-+.+.  
T Consensus       108 eni~-i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~--  183 (313)
T KOG1407|consen  108 ENIN-ITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ--  183 (313)
T ss_pred             cceE-EEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc--
Confidence            7665 79999 999999999999999999999998888888888999999987776655554 679999988666544  


Q ss_pred             eEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCC
Q 004203          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLIT  303 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~s  303 (768)
                       .+..|.....+|.|+|+|+++++++.     .||+..--+.+.                               -+...
T Consensus       184 -si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~-------------------------------isRld  231 (313)
T KOG1407|consen  184 -SIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC-------------------------------ISRLD  231 (313)
T ss_pred             -ccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee-------------------------------ecccc
Confidence             67889999999999999999988764     555542111111                               12245


Q ss_pred             CCceEEEEecCCCEEEEEecC
Q 004203          304 PPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       304 lpil~psFSpDG~rIv~~~~d  324 (768)
                      .|+...+||.||+.|+....|
T Consensus       232 wpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  232 WPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             CceEEEEeccCcceeeccCcc
Confidence            677788999999998875443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.73  E-value=1.1e-16  Score=181.88  Aligned_cols=186  Identities=22%  Similarity=0.265  Sum_probs=158.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeE-----E--
Q 004203           79 DARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSC-----L--  142 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~--------~L~gH~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~-----l--  142 (768)
                      +.+..|++++.|+++++|.++..        +..+|...|.+++++..+ .+|+++|.|.++++|++...+.     .  
T Consensus       375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~  454 (775)
T KOG0319|consen  375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT  454 (775)
T ss_pred             ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence            45679999999999999987432        457999999999998744 6899999999999999876221     1  


Q ss_pred             --EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEE
Q 004203          143 --KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWR  218 (768)
Q Consensus       143 --~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWD  218 (768)
                        .+...|...|++++.+| +.+++|+||.|++.+||+++....+.++ +|...|.++.|+|..+.|+++|.|+ |+||.
T Consensus       455 ~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~  533 (775)
T KOG0319|consen  455 CRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS  533 (775)
T ss_pred             hhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence              12357999999999999 9999999999999999999988888886 5999999999999999999999766 99999


Q ss_pred             cCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L  268 (768)
                      +.+..+..   .+.+|...|..+.|-.+|++|++++.     +|++++.++...+
T Consensus       534 is~fSClk---T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl  585 (775)
T KOG0319|consen  534 ISTFSCLK---TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL  585 (775)
T ss_pred             eccceeee---eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh
Confidence            99998755   78899999999999999999988776     6777655544444

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.73  E-value=5.7e-17  Score=169.77  Aligned_cols=176  Identities=19%  Similarity=0.245  Sum_probs=154.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC------------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCP------------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~------------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~  144 (768)
                      .+.++++|++++-||.|.+|+..+++            |.-+...|.|+.||.|...|++|+.||.|++|.+++|.|++.
T Consensus       221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr  300 (508)
T KOG0275|consen  221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR  300 (508)
T ss_pred             eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH
Confidence            45789999999999999999998773            345889999999999999999999999999999999999999


Q ss_pred             Ee-cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004203          145 LH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM  221 (768)
Q Consensus       145 l~-gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t  221 (768)
                      |. .|+..|+++.|+. |+..+++++.|.+++|--+++|++++.+ +|...|+...|++||.++++++ |++|++|+..+
T Consensus       301 FdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt  379 (508)
T KOG0275|consen  301 FDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT  379 (508)
T ss_pred             hhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence            86 8999999999999 8899999999999999999999999886 5899999999999999999998 55699999999


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      .++.. .+...+....|+++..-|...--+..+
T Consensus       380 teC~~-Tfk~~~~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  380 TECLS-TFKPLGTDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             hhhhh-hccCCCCcccceeEEEcCCCCceEEEE
Confidence            88765 344555677899998888765333333

>PTZ00420 coronin; Provisional

Probab=99.72  E-value=5.8e-16  Score=179.48  Aligned_cols=174  Identities=9%  Similarity=0.033  Sum_probs=131.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeCCCCeEEEEEe
Q 004203           80 ARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKT-LASTHGDHTVKIIDCQTGSCLKVLH  146 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~------------~L~gH~~~VtslafSPDG~~-LaSgS~DgtVrVWDl~tg~~l~~l~  146 (768)
                      .+..|++++.|+.|++||+...            .+.+|...|.+++|+|++.. |++++.|++|+|||+++++.+..+.
T Consensus        86 ~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~  165 (568)
T PTZ00420         86 FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN  165 (568)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            3678999999999999998643            25689999999999998876 5789999999999999998877776


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEE-----EEEcCCCCEEEEEECC-----eEE
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIAS-----IAFHASGELLAVASGH-----KLY  215 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~s-----vafSPDG~~LatgSdd-----~I~  215 (768)
                       |...|.+++|+| ++.+|++++.|+.|+|||+++++.+..+. |.+.+..     ..|++++.+|++++.+     .|+
T Consensus       166 -~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        166 -MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK  243 (568)
T ss_pred             -cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence             567899999999 99999999999999999999998887764 6655432     3456898988887733     499


Q ss_pred             EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |||++..........+..+...+......++|.+++++.+
T Consensus       244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG  283 (568)
T PTZ00420        244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG  283 (568)
T ss_pred             EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence            9999864431111111122333344444556776666544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.72  E-value=2e-17  Score=174.59  Aligned_cols=219  Identities=19%  Similarity=0.294  Sum_probs=165.0

Q ss_pred             CCCCcceecccccccccCCCc-cccceeecCCcceeec----CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----
Q 004203           31 RNSRLRNVFGLLAQREVAPRT-KHSSKRLLGETARKCS----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----  101 (768)
Q Consensus        31 rssk~rnIf~~~akrEis~~~-~kv~k~~wd~s~~~~s----~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----  101 (768)
                      ++.+.+.+|.+.-.-+.-..+ +....+.||.+...+.    ...+.++... -+.+.|++|+.|.+|++||.+++    
T Consensus       193 ~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLq-yd~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  193 RSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQ-YDERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             CcccCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeee-ccceEEEecCCCceEEEEeccCCchhh
Confidence            344555666653333322222 2233445554443322    1112233222 24558999999999999999988    


Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (768)
                      ++.+|.+.|..+.|+  ..++++++.|.+|.+||+....   +.+.+.||...|+.+.|+   .+++++++.|.+|++|+
T Consensus       272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWS  346 (499)
T ss_pred             HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEe
Confidence            467999999999998  5699999999999999997654   346778999999999995   47999999999999999


Q ss_pred             CCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-
Q 004203          179 ASTAECIGSR-DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-  255 (768)
Q Consensus       179 l~sg~~i~~l-~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-  255 (768)
                      +.++++++++ +|...|.|+.+.  ++++++|+. .+|++||+..+....   .+.+|..-|+++.|  |.+.+++++- 
T Consensus       347 ~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRF--d~krIVSGaYD  419 (499)
T KOG0281|consen  347 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRF--DNKRIVSGAYD  419 (499)
T ss_pred             ccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHH---HHhchHHhhhheee--cCceeeecccc
Confidence            9999999997 588899888764  889999985 559999999998765   78899999999999  4566777654 


Q ss_pred             ----eCCcCCC
Q 004203          256 ----VNDLDSS  262 (768)
Q Consensus       256 ----vwdl~sg  262 (768)
                          +||+..+
T Consensus       420 GkikvWdl~aa  430 (499)
T KOG0281|consen  420 GKIKVWDLQAA  430 (499)
T ss_pred             ceEEEEecccc
Confidence                6776543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=3e-17  Score=187.13  Aligned_cols=181  Identities=19%  Similarity=0.223  Sum_probs=157.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      ....|++++..|.|-+||+...       .|..|++.|++++|++ ...+|++||.||+||+||++..+-..++.+....
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES  178 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES  178 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence            4677999999999999999762       3679999999999999 6678999999999999999999888889888889


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-E-EEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCC
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-I-GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSP  228 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i-~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~  228 (768)
                      |+.|.|+|..+..|+++...|.|.+||++.... . +..+|.++|.++.|+|++.+||+|+.|+ |+|||..+...  .+
T Consensus       179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~--~~  256 (839)
T KOG0269|consen  179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA--KP  256 (839)
T ss_pred             hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc--cc
Confidence            999999998899999999999999999997543 2 2357999999999999999999999666 99999987655  34


Q ss_pred             eEeecCCCCeEEEEEccCCCeEEEEEe--------eCCcCCC
Q 004203          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSS  262 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s--------vwdl~sg  262 (768)
                      ........+|..|.|-|+.++.+++++        +||++..
T Consensus       257 ~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  257 KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            455667789999999999998888765        8888743

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.72  E-value=8.4e-17  Score=175.09  Aligned_cols=181  Identities=18%  Similarity=0.231  Sum_probs=150.0

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC--CCe
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ--TGS  140 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~--tg~  140 (768)
                      .+.......|++++.|+.|++||+...           .+.+|...|.+++|++ +..+|++++.|+.+.|||++  +.+
T Consensus       184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~  263 (422)
T KOG0264|consen  184 SWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK  263 (422)
T ss_pred             ccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence            344445678999999999999998743           2569999999999999 77899999999999999999  566


Q ss_pred             EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-cCCCCeEEEEEcCCCC-EEEEEE-CCeEEE
Q 004203          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPIASIAFHASGE-LLAVAS-GHKLYI  216 (768)
Q Consensus       141 ~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-~~i~~l-~h~~~V~svafSPDG~-~LatgS-dd~I~I  216 (768)
                      +....++|.+.|+|++|+|.++.+||+|+.|++|.|||+++- +++.++ .|...|..+.|+|... .|++++ |+.+.+
T Consensus       264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v  343 (422)
T KOG0264|consen  264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV  343 (422)
T ss_pred             CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence            778889999999999999999999999999999999999974 344454 5899999999999876 556555 455999


Q ss_pred             EEcCCCcccc--------C---CeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          217 WRYNMREETS--------S---PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       217 WDl~t~~~~~--------~---~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ||+..-...+        .   .+.-.+|...|..+.|+|+..+++++..
T Consensus       344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence            9997644322        1   2344568899999999999999888876

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.71  E-value=3.2e-16  Score=163.75  Aligned_cols=241  Identities=17%  Similarity=0.204  Sum_probs=181.1

Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------------------CCCCCCCCeEEEEECCCCCEEEEEeCC
Q 004203           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----------------------PLSPPPRSTIAAAFSPDGKTLASTHGD  128 (768)
Q Consensus        71 ~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----------------------~L~gH~~~VtslafSPDG~~LaSgS~D  128 (768)
                      .....+.+.++..+++|+.|.+|++.|.+..                      +|..|.+.|+++.|+|....|++++.|
T Consensus       114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD  193 (430)
T KOG0640|consen  114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD  193 (430)
T ss_pred             ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence            3445566778999999999999999998721                      356799999999999999999999999


Q ss_pred             CeEEEEeCCCCeEE---EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----cCCCCeEEEEEcC
Q 004203          129 HTVKIIDCQTGSCL---KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHA  201 (768)
Q Consensus       129 gtVrVWDl~tg~~l---~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l----~h~~~V~svafSP  201 (768)
                      ++|++||+..-...   +.|+ ....|+++.|+| .|++++.|....+++|||+++-++...-    +|.+.|+++.+++
T Consensus       194 ~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~  271 (430)
T KOG0640|consen  194 NTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS  271 (430)
T ss_pred             CeEEEEecccHHHHHHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence            99999998654322   3333 356799999999 9999999999999999999998887653    4888999999999


Q ss_pred             CCCEEEEEECCe-EEEEEcCCCccccCCeEeecC-CCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeec--C
Q 004203          202 SGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS--P  272 (768)
Q Consensus       202 DG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h-~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~--~  272 (768)
                      .|++.++++.|+ |++||--+.+++..  ....| ...|.+..|..+|+|+++++.     .|.+.+++........  .
T Consensus       272 t~~lYvTaSkDG~IklwDGVS~rCv~t--~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t  349 (430)
T KOG0640|consen  272 TGSLYVTASKDGAIKLWDGVSNRCVRT--IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT  349 (430)
T ss_pred             CccEEEEeccCCcEEeeccccHHHHHH--HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcc
Confidence            999999999655 99999888877551  12223 568999999999999999876     7877766655444332  1


Q ss_pred             C---------------cccCC---CCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCE
Q 004203          273 G---------------YWRYP---PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER  317 (768)
Q Consensus       273 G---------------~~~~p---~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~r  317 (768)
                      |               |.-+|   ...++.|+....+...+...  +...+..+..-||.+.-
T Consensus       350 grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl--gHn~a~R~i~HSP~~p~  410 (430)
T KOG0640|consen  350 GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL--GHNGAVRWIVHSPVEPA  410 (430)
T ss_pred             cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc--CCCCCceEEEeCCCCCc
Confidence            1               11122   35577788777766665543  23333444444554433

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.71  E-value=2.1e-15  Score=160.65  Aligned_cols=243  Identities=14%  Similarity=0.123  Sum_probs=178.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      .....+++|+.|..-.+|+..++    ++.+|+.+|+++.||.||.+||+|.-+|.|+||+..++.....+......+.-
T Consensus        74 P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieW  153 (399)
T KOG0296|consen   74 PNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEW  153 (399)
T ss_pred             CCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEE
Confidence            37788899999999999999987    57899999999999999999999999999999999999988888755666777


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCe---
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR---  229 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~---  229 (768)
                      +.||| -+.+|+.|+.||.|.+|.+.++...+. .+|..++++=.|.|||+.++++.+++ |++||..++.......   
T Consensus       154 l~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e  232 (399)
T KOG0296|consen  154 LKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE  232 (399)
T ss_pred             EEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence            99999 999999999999999999999544444 57999999999999999999999655 9999999875421000   


Q ss_pred             ---------------------------------------------EeecCCCCeEEEEEccCCCe--EEEEEe------e
Q 004203          230 ---------------------------------------------IVLRTRRSLRAVHFHPHAAP--LLLTAE------V  256 (768)
Q Consensus       230 ---------------------------------------------~l~~h~~~V~sVaFSPDG~~--LlaS~s------v  256 (768)
                                                                   ....+...+.+|.|.|....  |++.+.      +
T Consensus       233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i  312 (399)
T KOG0296|consen  233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI  312 (399)
T ss_pred             cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence                                                         00011112233333332211  222222      5


Q ss_pred             CCcCCCCcce---------eEeecC-Ccc--cCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          257 NDLDSSESSL---------TLATSP-GYW--RYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       257 wdl~sg~~~~---------~L~t~~-G~~--~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                      ||+..+.-+.         .+.-.. .++  ......|+.|+..++........   ...+++-.+++||.++|+-+.+|
T Consensus       313 yD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G---H~~~Il~f~ls~~~~~vvT~s~D  389 (399)
T KOG0296|consen  313 YDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG---HQMGILDFALSPQKRLVVTVSDD  389 (399)
T ss_pred             EecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec---CchheeEEEEcCCCcEEEEecCC
Confidence            6655433222         111111 111  11457889999888877766665   56688989999999999976554


Q ss_pred             C
Q 004203          325 H  325 (768)
Q Consensus       325 ~  325 (768)
                      .
T Consensus       390 ~  390 (399)
T KOG0296|consen  390 N  390 (399)
T ss_pred             C
Confidence            4

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.71  E-value=1.2e-15  Score=176.00  Aligned_cols=210  Identities=20%  Similarity=0.270  Sum_probs=173.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ...+++++.+++|++|+...+     ++.+|.+.|.+++|..-+.+|++|+.|.++++||+.+|+|...+.+|...|.++
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~  297 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL  297 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence            678999999999999999876     488999999999999878999999999999999999999999999999999998


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeec
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      ...+   .++++|+.|.+|++||+.++.++..+. |..+|.++..+  +.++++|+.+ .|++||+.+.+...   .+.+
T Consensus       298 ~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---sl~g  369 (537)
T KOG0274|consen  298 TIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---SLSG  369 (537)
T ss_pred             EccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee---eecC
Confidence            8754   888999999999999999999999987 99999999998  7889999855 59999999887655   7888


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe-----eCCcCCC-CcceeEeecCCccc------------CCCCeEEEecCCCCCCCCc
Q 004203          234 TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS-ESSLTLATSPGYWR------------YPPPVICMAGAHSSSHPGL  295 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg-~~~~~L~t~~G~~~------------~p~~~V~l~d~~s~d~~~L  295 (768)
                      |...|.++.+.+. ..++.++-     +||++.. +....+..+.+...            ...+.+.+|+.........
T Consensus       370 H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~  448 (537)
T KOG0274|consen  370 HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT  448 (537)
T ss_pred             CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee
Confidence            9999999998775 44454443     8888876 44444433322211            1235678888777776666


Q ss_pred             cccc
Q 004203          296 AEEV  299 (768)
Q Consensus       296 ~~~~  299 (768)
                      ....
T Consensus       449 ~~~~  452 (537)
T KOG0274|consen  449 LEGR  452 (537)
T ss_pred             eccC
Confidence            6553

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=4.6e-16  Score=175.16  Aligned_cols=176  Identities=19%  Similarity=0.269  Sum_probs=156.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ...+.+|+.|+.|.++|+...     .+.+|...|..+.|++|+++||+|++|..+.|||....+....+..|.++|..+
T Consensus       270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~  349 (484)
T KOG0305|consen  270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL  349 (484)
T ss_pred             CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence            556778899999999999865     378899999999999999999999999999999998888899999999999999


Q ss_pred             EEccCCCCEEEEE--eCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCeE
Q 004203          156 RFHPLNPTIIASG--SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       156 afSP~dg~lLaSg--S~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS---dd~I~IWDl~t~~~~~~~~~  230 (768)
                      +|+|....+||+|  +.|+.|++||..+++.+........|.++.|++..+-|+++-   ++.|.||++.+.+..   ..
T Consensus       350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---~~  426 (484)
T KOG0305|consen  350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---AE  426 (484)
T ss_pred             eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---ee
Confidence            9999888999995  569999999999999999999999999999999998777765   344999999986653   37


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEeeCCc
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDL  259 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~svwdl  259 (768)
                      +.+|...|..++++|||..+++++.+..+
T Consensus       427 l~gH~~RVl~la~SPdg~~i~t~a~DETl  455 (484)
T KOG0305|consen  427 LLGHTSRVLYLALSPDGETIVTGAADETL  455 (484)
T ss_pred             ecCCcceeEEEEECCCCCEEEEecccCcE
Confidence            88999999999999999999988874433

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.70  E-value=4e-16  Score=166.60  Aligned_cols=177  Identities=20%  Similarity=0.424  Sum_probs=137.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC---eEEEEEecC
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVLHGH  148 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH  148 (768)
                      ....|++|..-+.|++|...++       .|.+|+.+|.++.||| ....|++||-|++|+|||++.+   .++.+ +.|
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh  301 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAH  301 (440)
T ss_pred             cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ecc
Confidence            3455777777788999988766       5889999999999999 5568999999999999999988   33333 889


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC---CcEEEEec-CCCCeEEEEEcCCCC--EEEEEECCeEEEEEcCCC
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---AECIGSRD-FYRPIASIAFHASGE--LLAVASGHKLYIWRYNMR  222 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s---g~~i~~l~-h~~~V~svafSPDG~--~LatgSdd~I~IWDl~t~  222 (768)
                      .+.|+.|.|+. ...+||+|+.||+++|||++.   ++++..+. |..+|+++.|+|...  +.++|.|+.|.+||+...
T Consensus       302 ~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  302 NSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             CCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            99999999999 666999999999999999986   56677765 889999999999543  444444667999998654


Q ss_pred             cc-------------ccCCeEeecC--CCCeEEEEEccCCCeEEEEEeeCC
Q 004203          223 EE-------------TSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAEVND  258 (768)
Q Consensus       223 ~~-------------~~~~~~l~~h--~~~V~sVaFSPDG~~LlaS~svwd  258 (768)
                      ..             ..++..++-|  .+.+..|.|++.-.-++++.....
T Consensus       381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence            32             0123344444  567889999998876776665443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.69  E-value=1.5e-15  Score=164.42  Aligned_cols=179  Identities=15%  Similarity=0.161  Sum_probs=160.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ....+.+|+.|+.+-++|....    .|+||...|+.+.|+|+...+++++.|..|+||......+......|..+|+.+
T Consensus       230 s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~l  309 (506)
T KOG0289|consen  230 SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGL  309 (506)
T ss_pred             CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceee
Confidence            4678899999999999998876    588999999999999999999999999999999998888888889999999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEe
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV  231 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~---~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l  231 (768)
                      ..+| .+++|++++.|++..+.|++++.++....+.   -.+++.+|||||.+|.+|+.++ ++|||+..+....   .+
T Consensus       310 s~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a---~F  385 (506)
T KOG0289|consen  310 SLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA---KF  385 (506)
T ss_pred             eecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc---cC
Confidence            9999 9999999999999999999999988776553   3589999999999999999555 9999999988544   67


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203          232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg  262 (768)
                      .+|..+|..|+|+.+|-|+++++.     .||+|..
T Consensus       386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence            789999999999999999998876     6666643

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=3.3e-16  Score=175.13  Aligned_cols=175  Identities=15%  Similarity=0.207  Sum_probs=151.8

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      .-...-.+++.++|..|++||.+..     ++.||+.-|-+++|+| |.+.|++++-|++||||.+.+..+..+++||..
T Consensus       105 vHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek  184 (794)
T KOG0276|consen  105 VHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK  184 (794)
T ss_pred             ecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence            3456778899999999999999854     6999999999999999 889999999999999999999999999999999


Q ss_pred             CcEEEEEccCCC--CEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcccc
Q 004203          151 TPWVVRFHPLNP--TIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETS  226 (768)
Q Consensus       151 ~V~sVafSP~dg--~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~  226 (768)
                      .|+++.+-+ .+  .+|++|++|.+|+|||.++..|++++. |...|..+.|+|.=.++++|+. ++++||+-.+-+...
T Consensus       185 GVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~  263 (794)
T KOG0276|consen  185 GVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK  263 (794)
T ss_pred             CcceEEecc-CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence            999999987 43  499999999999999999999999985 9999999999999999999995 559999987765432


Q ss_pred             CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                         .+.-....|++|+-.+.+..++.+..
T Consensus       264 ---tLn~gleRvW~I~~~k~~~~i~vG~D  289 (794)
T KOG0276|consen  264 ---TLNYGLERVWCIAAHKGDGKIAVGFD  289 (794)
T ss_pred             ---hhhcCCceEEEEeecCCCCeEEEecc
Confidence               23334578899998888876666543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.69  E-value=1.1e-14  Score=160.73  Aligned_cols=169  Identities=15%  Similarity=0.254  Sum_probs=144.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe---cCCCCcE
Q 004203           81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH---GHRRTPW  153 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~---gH~g~V~  153 (768)
                      --+++++++|+.|-+++-.--    .+..|..-|.|+.|+|||.+|++++.||+|.+||=++|+.+..|.   +|.+.|+
T Consensus       160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf  239 (603)
T KOG0318|consen  160 PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF  239 (603)
T ss_pred             ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence            367999999999999986422    467899999999999999999999999999999999999999998   8999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC----CeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCC
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR----PIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP  228 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~----~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~  228 (768)
                      .+.|+| |+..+++++.|++++|||+.+.++++++....    .--.+-|.  +..|++.+ +|.|.+++......   +
T Consensus       240 alsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~---~  313 (603)
T KOG0318|consen  240 ALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSV---L  313 (603)
T ss_pred             EEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCCh---h
Confidence            999999 99999999999999999999999999876433    33345576  44555555 77799999988873   4


Q ss_pred             eEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..+.+|.+.|+++..+||+++|++++-
T Consensus       314 ~~i~GHnK~ITaLtv~~d~~~i~Sgsy  340 (603)
T KOG0318|consen  314 KVISGHNKSITALTVSPDGKTIYSGSY  340 (603)
T ss_pred             heecccccceeEEEEcCCCCEEEeecc
Confidence            578899999999999999998776653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.69  E-value=5.1e-15  Score=154.71  Aligned_cols=213  Identities=14%  Similarity=0.195  Sum_probs=153.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-C-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-P-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-~-----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ....++.++.|++||+|+++.. .     ...|.++|.+++|+.||..+++|+-|+.+++||+.+++ +..+..|.++|.
T Consensus        39 ~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvk  117 (347)
T KOG0647|consen   39 ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVK  117 (347)
T ss_pred             cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeeccccee
Confidence            5566778999999999999863 2     45799999999999999999999999999999999996 566678999999


Q ss_pred             EEEEccCCCC--EEEEEeCCCeEEEEECCCCcEEEEecCCC---------------------------------------
Q 004203          154 VVRFHPLNPT--IIASGSLDHEVRLWNASTAECIGSRDFYR---------------------------------------  192 (768)
Q Consensus       154 sVafSP~dg~--lLaSgS~DgtVrLWDl~sg~~i~~l~h~~---------------------------------------  192 (768)
                      .+.|-+ ...  .|++||.|++|+.||.+...++.++....                                       
T Consensus       118 t~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~Sp  196 (347)
T KOG0647|consen  118 TCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESP  196 (347)
T ss_pred             EEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCc
Confidence            999987 555  89999999999999999876644433222                                       


Q ss_pred             ---CeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCC---------CCeEEEEEccCCCeEEEEEeeCCc
Q 004203          193 ---PIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR---------RSLRAVHFHPHAAPLLLTAEVNDL  259 (768)
Q Consensus       193 ---~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~---------~~V~sVaFSPDG~~LlaS~svwdl  259 (768)
                         .+.+++..+|.+..+.|+ .|++.|..++.+... ..+.+.-|+         ..|++|+|+|....|++.+++.  
T Consensus       197 Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~-~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG--  273 (347)
T KOG0647|consen  197 LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK-DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG--  273 (347)
T ss_pred             ccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc-CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCc--
Confidence               245666666666556666 555666655554221 123333443         2478899999877777776522  


Q ss_pred             CCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203          260 DSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (768)
Q Consensus       260 ~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~  321 (768)
                                           .+.|||-+...  . ....+..+.|+...+|+.+|+..++.
T Consensus       274 ---------------------tf~FWDkdar~--k-Lk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  274 ---------------------TFSFWDKDART--K-LKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ---------------------eEEEecchhhh--h-hhccCcCCCccceeEecCCCCEEEEE
Confidence                                 23444422211  1 11223345577789999999988884

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.68  E-value=1.5e-15  Score=162.26  Aligned_cols=189  Identities=17%  Similarity=0.290  Sum_probs=153.4

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC--------------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCe
Q 004203           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--------------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHT  130 (768)
Q Consensus        72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~--------------------~L~gH~~~VtslafSP-DG~~LaSgS~Dgt  130 (768)
                      .+...........++|++.|.|++|++...                    ++.+|...=++++||| .-..|++|.--+.
T Consensus       156 Rvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~  235 (440)
T KOG0302|consen  156 RVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKG  235 (440)
T ss_pred             eeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccc
Confidence            333333446677889999999999998621                    3568998899999999 3334678888889


Q ss_pred             EEEEeCCCCeEE---EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCeEEEEEcCCCC
Q 004203          131 VKIIDCQTGSCL---KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---ECIGSRDFYRPIASIAFHASGE  204 (768)
Q Consensus       131 VrVWDl~tg~~l---~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg---~~i~~l~h~~~V~svafSPDG~  204 (768)
                      |++|...+|.-.   .-|.+|+..|-.++|||.....|+|++-|++|+|||++++   .++.+..|.+.|+.+.|+.+-.
T Consensus       236 I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~  315 (440)
T KOG0302|consen  236 IHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP  315 (440)
T ss_pred             eEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence            999998887532   4567899999999999988889999999999999999998   5566678999999999999988


Q ss_pred             EEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004203          205 LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD  260 (768)
Q Consensus       205 ~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~  260 (768)
                      +|++|+|++ ++|||++.-+.......+..|+.+|++|.|+|....+++.++      +||+.
T Consensus       316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            999999766 999999987766545567779999999999998765555443      66665

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.68  E-value=1.8e-15  Score=157.87  Aligned_cols=163  Identities=23%  Similarity=0.292  Sum_probs=133.9

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~-tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (768)
                      .+.+|++.|+.+.|+|+|..|++|+.|..|.+|++. .-+....+++|.++|..+.|.+ |+..+++++.|++|+.||++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEecc
Confidence            578999999999999999999999999999999953 3445678899999999999999 99999999999999999999


Q ss_pred             CCcEEEEec-CCCCeEEEEEcCCCCEE-EEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe--
Q 004203          181 TAECIGSRD-FYRPIASIAFHASGELL-AVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--  255 (768)
Q Consensus       181 sg~~i~~l~-h~~~V~svafSPDG~~L-atgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s--  255 (768)
                      +|++++.+. |.+-|+++.-+.-|..| .++++|+ +++||+++++...    ....+..++++.|..++..+++++-  
T Consensus       121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----TFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh----ccccceeEEEEEecccccceeeccccC
Confidence            999999875 77788888755456544 5555555 9999999887644    4455778999999999998777664  


Q ss_pred             ---eCCcCCCCcceeEe
Q 004203          256 ---VNDLDSSESSLTLA  269 (768)
Q Consensus       256 ---vwdl~sg~~~~~L~  269 (768)
                         +||++..+....+.
T Consensus       197 ~ikvWd~r~~d~~~~ls  213 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLS  213 (338)
T ss_pred             ceeeeccccCcceEEee
Confidence               67776554444443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.68  E-value=4.2e-16  Score=170.59  Aligned_cols=215  Identities=20%  Similarity=0.223  Sum_probs=176.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      ...+++.|+.|++..++.+||+...      ++..-.-.+.+++.|||.+..+++..||.|.|||+.+...++.|+||+.
T Consensus       473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD  552 (705)
T KOG0639|consen  473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD  552 (705)
T ss_pred             ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence            3457888999999999999999865      2334445689999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCe
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR  229 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~  229 (768)
                      .+.||.+++ ||..|-+|+.|++||-||++.+..+....+...|.++.++|++.+|++|..+. +.+......+.    .
T Consensus       553 GascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k----y  627 (705)
T KOG0639|consen  553 GASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK----Y  627 (705)
T ss_pred             CceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc----e
Confidence            999999999 99999999999999999999999888888889999999999999999999655 88887766553    2


Q ss_pred             EeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEE
Q 004203          230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRP  309 (768)
Q Consensus       230 ~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p  309 (768)
                      .+..|...|.++.|.+.|+++++++.++-+..|+.+.      |.      .|+-.               ....+++.+
T Consensus       628 qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy------Ga------siFqs---------------kE~SsVlsC  680 (705)
T KOG0639|consen  628 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------GA------SIFQS---------------KESSSVLSC  680 (705)
T ss_pred             eecccccEEEEEEecccCceeeecCchhhhhhccCcc------cc------ceeec---------------cccCcceee
Confidence            4667899999999999999999999866555443211      10      11110               123456678


Q ss_pred             EEecCCCEEEEEec
Q 004203          310 SFVRDDERISLQHT  323 (768)
Q Consensus       310 sFSpDG~rIv~~~~  323 (768)
                      -.|.|+++|+.+..
T Consensus       681 DIS~ddkyIVTGSG  694 (705)
T KOG0639|consen  681 DISFDDKYIVTGSG  694 (705)
T ss_pred             eeccCceEEEecCC
Confidence            88999999997433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.68  E-value=1.9e-15  Score=164.67  Aligned_cols=181  Identities=18%  Similarity=0.255  Sum_probs=150.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe----
Q 004203           80 ARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS----  140 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~--------------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~----  140 (768)
                      +...+++....+.|.+||....              .|.+|.+.-++++|++ ..-+|++++.|++|++||+....    
T Consensus       136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~  215 (422)
T KOG0264|consen  136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK  215 (422)
T ss_pred             CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc
Confidence            3455667788899999997632              4678999889999999 55689999999999999996542    


Q ss_pred             ---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC--CcEEEE-ecCCCCeEEEEEcCCC-CEEEEEE-CC
Q 004203          141 ---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST--AECIGS-RDFYRPIASIAFHASG-ELLAVAS-GH  212 (768)
Q Consensus       141 ---~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s--g~~i~~-l~h~~~V~svafSPDG-~~LatgS-dd  212 (768)
                         ....+.+|...|..++|++.+..+|++++.|+.+.|||+++  .++... -+|...|++++|+|-+ ..||+++ |+
T Consensus       216 ~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~  295 (422)
T KOG0264|consen  216 VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK  295 (422)
T ss_pred             cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence               35778999999999999999999999999999999999995  333333 4589999999999955 4778888 55


Q ss_pred             eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCC
Q 004203          213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSS  262 (768)
Q Consensus       213 ~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg  262 (768)
                      +|.+||+|+...  .+..+.+|...|..|.|||+...++++++      +||+...
T Consensus       296 tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i  349 (422)
T KOG0264|consen  296 TVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI  349 (422)
T ss_pred             cEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence            599999998876  56788899999999999999998888876      7777643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.68  E-value=7.1e-16  Score=161.21  Aligned_cols=158  Identities=28%  Similarity=0.403  Sum_probs=132.7

Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC------------C------eEEEEEecCCCCcEEEEEccCCC
Q 004203          101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------------G------SCLKVLHGHRRTPWVVRFHPLNP  162 (768)
Q Consensus       101 ~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t------------g------~~l~~l~gH~g~V~sVafSP~dg  162 (768)
                      +.+..|+..+.+.+||+||.++++|+.|..|+|+|++.            +      -.+++|..|...|+++.|+| ..
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RE  184 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hh
Confidence            35778999999999999999999999999999999861            1      24678889999999999999 99


Q ss_pred             CEEEEEeCCCeEEEEECCCCcEE---EEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCe
Q 004203          163 TIIASGSLDHEVRLWNASTAECI---GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       163 ~lLaSgS~DgtVrLWDl~sg~~i---~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      .+|+++++|++|++||+......   +.+....+|.++.|+|.|.+|++|.+.- +++||+.+-++-.....-.+|...|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            99999999999999999865433   3355667999999999999999999876 9999999987644333455688999


Q ss_pred             EEEEEccCCCeEEEEEeeCCc
Q 004203          239 RAVHFHPHAAPLLLTAEVNDL  259 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~svwdl  259 (768)
                      ++|.+++.|+..++++.+..+
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~I  285 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAI  285 (430)
T ss_pred             eEEEecCCccEEEEeccCCcE
Confidence            999999999977766653333

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.68  E-value=3.3e-14  Score=148.20  Aligned_cols=176  Identities=17%  Similarity=0.222  Sum_probs=133.4

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203           82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa  156 (768)
                      ..+++.+.|+.|++||..+++    +..+ ..+.+++|+|||+.+ ++++.++.|++||+.+++.+..+..+.. +..+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~   79 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA   79 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence            356788899999999998763    3333 447789999999977 5667889999999999988877765544 56789


Q ss_pred             EccCCCCEEE-EEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEeec
Q 004203          157 FHPLNPTIIA-SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       157 fSP~dg~lLa-SgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~~l~~  233 (768)
                      |+| +++.++ ++..|+.|++||+++++.+..+.....+..++|+|+|+++++++.+.  +.+||..+.+...    ...
T Consensus        80 ~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~----~~~  154 (300)
T TIGR03866        80 LHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD----NVL  154 (300)
T ss_pred             ECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE----EEE
Confidence            999 666554 45678999999999988877776666678899999999999888643  7788987765422    112


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe------eCCcCCCCc
Q 004203          234 TRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES  264 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~~  264 (768)
                      ....+..+.|+|+|+++++++.      +|++..++.
T Consensus       155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~  191 (300)
T TIGR03866       155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV  191 (300)
T ss_pred             cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence            3345678999999998866542      777765543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.67  E-value=1e-15  Score=174.02  Aligned_cols=180  Identities=19%  Similarity=0.273  Sum_probs=158.9

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l  142 (768)
                      .++...++++.|++|++||....                +...-+..|.|+.+||||++|+.+--|.+|+||-+++-+..
T Consensus       464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf  543 (888)
T KOG0306|consen  464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF  543 (888)
T ss_pred             CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee
Confidence            46788999999999999998632                11134567999999999999999999999999999999999


Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcC
Q 004203          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYN  220 (768)
Q Consensus       143 ~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~  220 (768)
                      ..+.||.-+|.|+..+| |++++++|+.|++|++|-+.-|.|-+. ++|.+.|.++.|-|+...+.+++ +++|+-||-.
T Consensus       544 lsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~  622 (888)
T KOG0306|consen  544 LSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE  622 (888)
T ss_pred             eeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechh
Confidence            99999999999999999 999999999999999999999999877 67999999999999888888777 5559999988


Q ss_pred             CCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCC
Q 004203          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS  262 (768)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg  262 (768)
                      +-+..+   .+.+|...|++++.+|+|.++++++.+..++-|
T Consensus       623 kFe~iq---~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  623 KFEEIQ---KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW  661 (888)
T ss_pred             hhhhhe---eeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence            887655   788999999999999999988888876666644

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.66  E-value=4.1e-15  Score=161.08  Aligned_cols=174  Identities=19%  Similarity=0.312  Sum_probs=150.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC--CCCc
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--RRTP  152 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--~g~V  152 (768)
                      .....+++.+.|..|++|.....    ....|.++|+.+..+|.|.||+++++|++....|++++..+......  .-.+
T Consensus       271 ~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~  350 (506)
T KOG0289|consen  271 KDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEY  350 (506)
T ss_pred             cchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccccee
Confidence            34566788899999999998755    35689999999999999999999999999999999999987766532  2348


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI  230 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~  230 (768)
                      ++.+||| ||.+|.+|..|+.|+|||+.++.....|. |.++|..++|+.+|-+|+++++++ |++||+++.+...  ..
T Consensus       351 ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k--t~  427 (506)
T KOG0289|consen  351 TSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK--TI  427 (506)
T ss_pred             EEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc--ee
Confidence            8999999 99999999999999999999998877775 899999999999999999999887 9999999887533  23


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEe
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .......|.++.|.+.|.+++++++
T Consensus       428 ~l~~~~~v~s~~fD~SGt~L~~~g~  452 (506)
T KOG0289|consen  428 QLDEKKEVNSLSFDQSGTYLGIAGS  452 (506)
T ss_pred             eccccccceeEEEcCCCCeEEeecc
Confidence            3344558999999999999988865

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.66  E-value=4.9e-15  Score=152.68  Aligned_cols=153  Identities=16%  Similarity=0.302  Sum_probs=137.1

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s  181 (768)
                      .+++|.++++-+.|+.+|.+|++++.|.++.||-..+|+.+.++.||++.|+++..+- +.+.+++|+.|.+++|||+++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence            3679999999999999999999999999999999989999999999999999999988 899999999999999999999


Q ss_pred             CcEEEEecCCCCeEEEEEcCCCCEEEEEECCe------EEEEEcCCCc----cccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203          182 AECIGSRDFYRPIASIAFHASGELLAVASGHK------LYIWRYNMRE----ETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       182 g~~i~~l~h~~~V~svafSPDG~~LatgSdd~------I~IWDl~t~~----~~~~~~~l~~h~~~V~sVaFSPDG~~Ll  251 (768)
                      |+++..++...+|..+.|+++|.+++...++.      |.++|++...    ...+..++..+...++.+.|+|-+++|+
T Consensus        84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            99999999999999999999999998888642      9999998543    1122345666788999999999999888


Q ss_pred             EEEe
Q 004203          252 LTAE  255 (768)
Q Consensus       252 aS~s  255 (768)
                      ++.+
T Consensus       164 ~Ghe  167 (327)
T KOG0643|consen  164 AGHE  167 (327)
T ss_pred             EecC
Confidence            8765

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.66  E-value=2.1e-15  Score=162.37  Aligned_cols=238  Identities=13%  Similarity=0.135  Sum_probs=177.6

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-  146 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-  146 (768)
                      ...+.+|++|++++.|.+..+|+....       ++.+|..+|.-+.||||.++|++|+.|..+++||+.+|+....+. 
T Consensus       230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~  309 (519)
T KOG0293|consen  230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS  309 (519)
T ss_pred             EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence            335578999999999999999987643       578999999999999999999999999999999999999887774 


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCc
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASGH-KLYIWRYNMRE  223 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~  223 (768)
                      +++..+.+++|.| |+..+++|+.|+++..||+.... ...+.  ....|.+++.++||++++....+ +|++++..+..
T Consensus       310 ~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~  387 (519)
T KOG0293|consen  310 GLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV  387 (519)
T ss_pred             CcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence            3467899999999 99999999999999999997543 33332  22468999999999988877755 59999988776


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeec-----------CCcc-c-----CCCCe
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS-----------PGYW-R-----YPPPV  281 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~-----------~G~~-~-----~p~~~  281 (768)
                      ...    +.....+|++++.|.||+++++.-.     .||+....-......+           .|+. .     .....
T Consensus       388 dr~----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k  463 (519)
T KOG0293|consen  388 DRG----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK  463 (519)
T ss_pred             hhc----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence            533    4556689999999999998887544     7888743322222111           1111 0     12356


Q ss_pred             EEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203          282 ICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (768)
Q Consensus       282 V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~  321 (768)
                      |++|...++.....   .++.+-.+-.++|+|.+.++.+-
T Consensus       464 vyIWhr~sgkll~~---LsGHs~~vNcVswNP~~p~m~AS  500 (519)
T KOG0293|consen  464 VYIWHRISGKLLAV---LSGHSKTVNCVSWNPADPEMFAS  500 (519)
T ss_pred             EEEEEccCCceeEe---ecCCcceeeEEecCCCCHHHhhc
Confidence            77777655544333   33344344467788877776664

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.66  E-value=2.5e-15  Score=160.76  Aligned_cols=180  Identities=17%  Similarity=0.234  Sum_probs=148.6

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-----------------------------CCCCCCCCeEEEEECCCCCEEEEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC-----------------------------PLSPPPRSTIAAAFSPDGKTLAST  125 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~-----------------------------~L~gH~~~VtslafSPDG~~LaSg  125 (768)
                      +....++.++++++.|..|++|+.+..                             .+.+|.++|.++.|++ ...++++
T Consensus       199 Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~  277 (423)
T KOG0313|consen  199 VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSV  277 (423)
T ss_pred             EEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEee
Confidence            344568899999999999999993210                             2569999999999997 7799999


Q ss_pred             eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc--E--EEEecCCCCeEEEEEcC
Q 004203          126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--C--IGSRDFYRPIASIAFHA  201 (768)
Q Consensus       126 S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~--~--i~~l~h~~~V~svafSP  201 (768)
                      +.|++|++||++++.+...+.+ ...+.++..+| ..++|++|+.|..++|||-+++.  .  +...+|..-|.++.|+|
T Consensus       278 SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp  355 (423)
T KOG0313|consen  278 SWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP  355 (423)
T ss_pred             cccceEEEEEeecccceeeeec-CcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence            9999999999999999888875 45699999999 99999999999999999999864  2  23357999999999999


Q ss_pred             CCC-EEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203          202 SGE-LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (768)
Q Consensus       202 DG~-~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~  260 (768)
                      ... +|++++ |+++++||+++...  ....+.+|...|.++.|+.. ..|++++.+..++
T Consensus       356 ~~~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  356 TNEFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLR  413 (423)
T ss_pred             CCceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEEeccCC-ceEEeccCcceEE
Confidence            877 566666 56699999999875  34578889999999999854 4466666555554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.66  E-value=4.2e-16  Score=159.16  Aligned_cols=213  Identities=18%  Similarity=0.185  Sum_probs=169.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC-C--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEecCCCCcEEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCP-L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTPWVVR  156 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~-L--~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~g~V~sVa  156 (768)
                      -.+.++++.|=+-++||.-++. +  -.|+.-|.+++|+.|.++|++|+.+..+||||++..+ +.+.+.+|.+.|+.+.
T Consensus        71 a~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~  150 (334)
T KOG0278|consen   71 ATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVL  150 (334)
T ss_pred             hhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEE
Confidence            3556678888899999998872 2  3689999999999999999999999999999998754 5678899999999999


Q ss_pred             EccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCC
Q 004203          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRR  236 (768)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~  236 (768)
                      |.. ..+.|++.+.|++||+||.++++.++.+..+.+|+++..++||++|..+....|.+||..+-+...    ...-..
T Consensus       151 wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK----s~k~P~  225 (334)
T KOG0278|consen  151 WCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK----SYKMPC  225 (334)
T ss_pred             Eec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee----eccCcc
Confidence            998 778888889999999999999999999999999999999999999998888889999998876433    334567


Q ss_pred             CeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCC
Q 004203          237 SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE  316 (768)
Q Consensus       237 ~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~  316 (768)
                      .|.+...+|+-..+++++++-.+.                       ..+-.++..+...  ..+...|+..+.|||||.
T Consensus       226 nV~SASL~P~k~~fVaGged~~~~-----------------------kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  226 NVESASLHPKKEFFVAGGEDFKVY-----------------------KFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGE  280 (334)
T ss_pred             ccccccccCCCceEEecCcceEEE-----------------------EEeccCCceeeec--ccCCCCceEEEEECCCCc
Confidence            899999999998777776521110                       0111122222221  234556788899999998


Q ss_pred             EEEEEec
Q 004203          317 RISLQHT  323 (768)
Q Consensus       317 rIv~~~~  323 (768)
                      .-+.+..
T Consensus       281 ~yAsGSE  287 (334)
T KOG0278|consen  281 LYASGSE  287 (334)
T ss_pred             eeeccCC
Confidence            7776433

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.65  E-value=1.9e-16  Score=165.97  Aligned_cols=161  Identities=19%  Similarity=0.264  Sum_probs=140.7

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE--------ecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l--------~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL  176 (768)
                      +.+.-+.|..|||||++|++|+.||-|.+||..+|+..+.+        --+..+|.|+.|+. |...+++|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence            45667899999999999999999999999999999865544        34678999999999 9999999999999999


Q ss_pred             EECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          177 WNASTAECIGSRD--FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       177 WDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      |.+++|.|++.+.  |...|+++.|+.|+..+.+++.| .+++.-+.+++...   .+.+|...|+.+.|++||.++++.
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCccccccceEEcCCCCeEEEe
Confidence            9999999999875  89999999999999999999855 59999999998755   678899999999999999999887


Q ss_pred             Ee-----eCCcCCCCcceeEe
Q 004203          254 AE-----VNDLDSSESSLTLA  269 (768)
Q Consensus       254 ~s-----vwdl~sg~~~~~L~  269 (768)
                      ++     +|+.++.++..++.
T Consensus       367 SsDgtvkvW~~KtteC~~Tfk  387 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLSTFK  387 (508)
T ss_pred             cCCccEEEecCcchhhhhhcc
Confidence            65     77777666654443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.64  E-value=9e-15  Score=150.78  Aligned_cols=180  Identities=14%  Similarity=0.097  Sum_probs=150.5

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ..++..|++++.|.+..+|-...+    ++.+|++.|.+++.+-+.+++++|+.|.++++||+++|+++..++ ...+|.
T Consensus        19 N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk   97 (327)
T KOG0643|consen   19 NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVK   97 (327)
T ss_pred             cCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeE
Confidence            357889999999999999988655    688999999999999999999999999999999999999999997 456799


Q ss_pred             EEEEccCCCCEEEEEeCC-----CeEEEEECCC-------CcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEc
Q 004203          154 VVRFHPLNPTIIASGSLD-----HEVRLWNAST-------AECIGSR-DFYRPIASIAFHASGELLAVASG-HKLYIWRY  219 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~D-----gtVrLWDl~s-------g~~i~~l-~h~~~V~svafSPDG~~LatgSd-d~I~IWDl  219 (768)
                      .+.|++ ++++++....+     +.|.++|++.       .++...+ .+.+.++.+-|.|-++.|++|.+ +.|.+||+
T Consensus        98 ~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da  176 (327)
T KOG0643|consen   98 RVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDA  176 (327)
T ss_pred             EEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEc
Confidence            999999 88887776543     5899999983       4444443 46789999999999999999985 45999999


Q ss_pred             CCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004203          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (768)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~s  261 (768)
                      +++....  .....|...|+.++|++|..++++++.     .+|+++
T Consensus       177 ~~g~~~v--~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  177 RTGKELV--DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             ccCceee--echhhhccccccccccCCcceEEecccCccceeeeccc
Confidence            9986532  234557889999999999999888765     555553

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=3e-16  Score=177.87  Aligned_cols=172  Identities=20%  Similarity=0.330  Sum_probs=152.8

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      +...+.++.|++|..+.+|.....    .|.+|...|.++.|+++..+|+.|+.+|+||+||+++++.+++|.||...+.
T Consensus        37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~  116 (825)
T KOG0267|consen   37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT  116 (825)
T ss_pred             eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc
Confidence            456788899999999999987643    4789999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEe
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV  231 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l  231 (768)
                      .+.|+| -+.++++|+.|..+++||++...|...++ |...+..+.|+|+|++++.++++. ++|||+..++...   .+
T Consensus       117 sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~---ef  192 (825)
T KOG0267|consen  117 SVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK---EF  192 (825)
T ss_pred             eeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc---cc
Confidence            999999 99999999999999999999878888765 788899999999999999999754 9999998887644   56


Q ss_pred             ecCCCCeEEEEEccCCCeEEEE
Q 004203          232 LRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ..|...+.++.|+|..-.+..+
T Consensus       193 ~~~e~~v~sle~hp~e~Lla~G  214 (825)
T KOG0267|consen  193 KSHEGKVQSLEFHPLEVLLAPG  214 (825)
T ss_pred             ccccccccccccCchhhhhccC
Confidence            6789999999999987644333

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=9.1e-16  Score=172.45  Aligned_cols=187  Identities=19%  Similarity=0.271  Sum_probs=159.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eEEEEEe
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLH  146 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l~  146 (768)
                      ..+++|++++.|+.|++|+....          .++.|..-|++++...+|+.|+++|.|.+|++|+...+  -++.++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            45668999999999999998643          36689999999999999999999999999999999877  5788899


Q ss_pred             cCCCCcEEEEE-ccCCCCEEEEEeCCCeEEEEECCCCcE--EEEe----------cCCCCeEEEEEcCCCCEEEEEECCe
Q 004203          147 GHRRTPWVVRF-HPLNPTIIASGSLDHEVRLWNASTAEC--IGSR----------DFYRPIASIAFHASGELLAVASGHK  213 (768)
Q Consensus       147 gH~g~V~sVaf-SP~dg~lLaSgS~DgtVrLWDl~sg~~--i~~l----------~h~~~V~svafSPDG~~LatgSdd~  213 (768)
                      .|...|.|+++ .+ +..++|+|+.|+.|+|||+.++..  +..+          ++...|++++.++.|..|+.|+-.+
T Consensus       115 ~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek  193 (735)
T KOG0308|consen  115 THKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK  193 (735)
T ss_pred             cccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence            99999999999 66 899999999999999999998732  2221          4667899999999998888888655


Q ss_pred             -EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004203          214 -LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (768)
Q Consensus       214 -I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~  269 (768)
                       |++||.++.+...   .+.+|...|+.+..++||..++++++     +|++...++..++.
T Consensus       194 ~lr~wDprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~  252 (735)
T KOG0308|consen  194 DLRLWDPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI  252 (735)
T ss_pred             ceEEecccccccee---eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence             9999999998655   77899999999999999999998876     77777555544443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=1.1e-14  Score=152.98  Aligned_cols=171  Identities=18%  Similarity=0.200  Sum_probs=147.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~--~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      -.+.++++|+.|.+|++||....    .+..|.+.|+++.|.++-.  .|++|+.||.|.+|+....+++..+++|.+.|
T Consensus        51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V  130 (362)
T KOG0294|consen   51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV  130 (362)
T ss_pred             ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc
Confidence            37899999999999999999865    5778999999999999765  99999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEee
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVL  232 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~  232 (768)
                      +.++.|| .+++.++.+.|+.+++||+-.|+.-..+......+.+.|+|.|.+++....++|-+|.+.+.....    ..
T Consensus       131 t~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~----~i  205 (362)
T KOG0294|consen  131 TDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFR----EI  205 (362)
T ss_pred             ceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhh----hh
Confidence            9999999 999999999999999999999987777666666667999999999999999999999998876533    22


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe
Q 004203          233 RTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       233 ~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .....+.++.|-..+ ++++++.
T Consensus       206 ~~~~r~l~~~~l~~~-~L~vG~d  227 (362)
T KOG0294|consen  206 ENPKRILCATFLDGS-ELLVGGD  227 (362)
T ss_pred             hccccceeeeecCCc-eEEEecC
Confidence            333567777776444 4555554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=2.5e-16  Score=178.52  Aligned_cols=171  Identities=23%  Similarity=0.332  Sum_probs=152.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ....|+.+..+|+|++||++..    +|.+|...+..+.|+|-+.++++++.|..+++||.+...|...+++|...|..+
T Consensus        81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l  160 (825)
T KOG0267|consen   81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL  160 (825)
T ss_pred             chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEE
Confidence            4566788999999999999976    588999999999999999999999999999999999888999999999999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeec
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~  233 (768)
                      +|+| +|+++++++.|.+++|||+..|+....|. |.+.+.++.|+|..-+++.|+.++ +++||+++-+.+.   ....
T Consensus       161 ~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~---s~~~  236 (825)
T KOG0267|consen  161 RLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS---SGKP  236 (825)
T ss_pred             eecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee---ccCC
Confidence            9999 99999999999999999999999999987 899999999999999999999655 9999999776543   2223


Q ss_pred             CCCCeEEEEEccCCCeEEEEE
Q 004203          234 TRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ....|.++.|+|+++.++.+.
T Consensus       237 ~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  237 ETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             ccCCceeeeecCCceeeecCc
Confidence            367899999999999655443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=6.4e-15  Score=161.65  Aligned_cols=170  Identities=14%  Similarity=0.167  Sum_probs=144.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCc
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTP  152 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~g~V  152 (768)
                      .++..++++++|+.++.||+.+.    .+.+|++.|.|.+|+| ++..++|||.||+|++||+++. ..+..+ .|+.+|
T Consensus       121 ~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pV  199 (487)
T KOG0310|consen  121 QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPV  199 (487)
T ss_pred             cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCce
Confidence            46788899999999999999876    5789999999999999 5668999999999999999887 556666 599999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCe
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPR  229 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~  229 (768)
                      ..+.+-| .|.+|++++.. .|++||+.+|. .+.... |...|+|+++..++..|++++ |+.+++||+.+-+...   
T Consensus       200 e~vl~lp-sgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~---  274 (487)
T KOG0310|consen  200 ESVLALP-SGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH---  274 (487)
T ss_pred             eeEEEcC-CCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE---
Confidence            9999999 88999998754 69999999654 444444 999999999999999999999 7779999976665432   


Q ss_pred             EeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          230 IVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       230 ~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                       -..-.++|.+++.+||++.++++.+
T Consensus       275 -s~~~~~pvLsiavs~dd~t~viGms  299 (487)
T KOG0310|consen  275 -SWKYPGPVLSIAVSPDDQTVVIGMS  299 (487)
T ss_pred             -eeecccceeeEEecCCCceEEEecc
Confidence             3345789999999999998887765

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.8e-15  Score=155.04  Aligned_cols=174  Identities=18%  Similarity=0.235  Sum_probs=144.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      .+..+++.+.|++||+|+...+    ++.+|...|....|+| .++.|+++|.|+++++||++.......+..|...+.+
T Consensus       116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~  195 (311)
T KOG0277|consen  116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILC  195 (311)
T ss_pred             cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEe
Confidence            4556677799999999999865    6899999999999999 8899999999999999999875444558899999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEE-ecCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccccCCeE
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRI  230 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~-l~h~~~V~svafSPDG~-~LatgSdd~-I~IWDl~t~~~~~~~~~  230 (768)
                      +.|+..+...+++|+.|+.|+.||+++-+ ++.. .+|.-.|..+.|+|... .|++++.|- ++|||...+....  ..
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~--e~  273 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI--ET  273 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh--hh
Confidence            99999899999999999999999999743 3443 46888999999999754 788888665 9999998665422  34


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEe
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...|..-|..+.||+.....++++.
T Consensus       274 ~~~HtEFv~g~Dws~~~~~~vAs~g  298 (311)
T KOG0277|consen  274 VDHHTEFVCGLDWSLFDPGQVASTG  298 (311)
T ss_pred             hhccceEEeccccccccCceeeecc
Confidence            5678899999999997555555543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.63  E-value=1.8e-15  Score=172.74  Aligned_cols=173  Identities=18%  Similarity=0.283  Sum_probs=146.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~g~V~  153 (768)
                      .-..|++|+.|+.|+.||++..    ++.+..+.|.++.|+| .+.+|+++.+.|.+.+||++.. ++...+..|.+.|.
T Consensus       145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~  224 (839)
T KOG0269|consen  145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL  224 (839)
T ss_pred             CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence            3567899999999999999865    5778899999999999 8899999999999999999764 56788899999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcE--EEEecCCCCeEEEEEcCCCC-EEEEEE--CCe-EEEEEcCCCccccC
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAEC--IGSRDFYRPIASIAFHASGE-LLAVAS--GHK-LYIWRYNMREETSS  227 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~--i~~l~h~~~V~svafSPDG~-~LatgS--dd~-I~IWDl~t~~~~~~  227 (768)
                      ++.|+| ++.+||+|++|+.|+|||+.+++.  +.++..-.++.++.|-|+.. +|++++  ++. |+|||++..-.  +
T Consensus       225 c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--P  301 (839)
T KOG0269|consen  225 CLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--P  301 (839)
T ss_pred             EEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--c
Confidence            999999 999999999999999999987654  45566778999999999876 566666  344 99999988765  3


Q ss_pred             CeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...+..|...++.++|......++.+++
T Consensus       302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~s  329 (839)
T KOG0269|consen  302 YATFLEHTDSVTGIAWDSGDRINLWSCS  329 (839)
T ss_pred             ceeeeccCccccceeccCCCceeeEeec
Confidence            4567789999999999875555666655

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.63  E-value=9e-15  Score=148.54  Aligned_cols=149  Identities=16%  Similarity=0.283  Sum_probs=129.6

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s  181 (768)
                      .+..|.++|..+.|+-||+|.++++.|.+|++|+...|.+++++.+|+..|..++.+. |...|++++.|+.|.+||+.+
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEccc
Confidence            3567999999999999999999999999999999999999999999999999999998 888999999999999999999


Q ss_pred             CcEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          182 AECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       182 g~~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      |+..+.+. |...|+.+.|+.+...+++|+ |.++++||.++..... ...+......|.+|..+..  .|++++
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-iQildea~D~V~Si~v~~h--eIvaGS  162 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-IQILDEAKDGVSSIDVAEH--EIVAGS  162 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-cchhhhhcCceeEEEeccc--EEEeec
Confidence            99999874 889999999999999999999 4559999999876522 2234446788999988643  244443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=3.6e-14  Score=161.74  Aligned_cols=197  Identities=18%  Similarity=0.232  Sum_probs=159.4

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-----CeEEEE
Q 004203           74 FEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSCLKV  144 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-----g~~l~~  144 (768)
                      ..-...++.+++.|...|.+.++|+...    +...|.+.|.+++.+||++.+++||.|.+|++||+.-     |...+.
T Consensus       417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~  496 (888)
T KOG0306|consen  417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV  496 (888)
T ss_pred             EEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence            3335568899999999999999999865    4678999999999999999999999999999999732     211111


Q ss_pred             Ee-------cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EE
Q 004203          145 LH-------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LY  215 (768)
Q Consensus       145 l~-------gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSdd~-I~  215 (768)
                      ++       .-...|.|+.+|| |+++++.+-.|.+|++|-+.+-+..-. ++|.-+|.|+..+||++.+++|+.|+ |+
T Consensus       497 lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVK  575 (888)
T KOG0306|consen  497 LSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVK  575 (888)
T ss_pred             eeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceE
Confidence            11       1346799999999 999999999999999999999876554 67999999999999999999999776 99


Q ss_pred             EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCC--cceeEeecCCc
Q 004203          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE--SSLTLATSPGY  274 (768)
Q Consensus       216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~--~~~~L~t~~G~  274 (768)
                      +|-++-+.+-.   .+..|...|.+|.|-|....+.+.+.+..++.|+  .-..+....||
T Consensus       576 iWGLdFGDCHK---S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H  633 (888)
T KOG0306|consen  576 IWGLDFGDCHK---SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH  633 (888)
T ss_pred             Eeccccchhhh---hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc
Confidence            99999998744   6889999999999999877666666655555443  22344444555

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.62  E-value=4.1e-15  Score=152.04  Aligned_cols=177  Identities=18%  Similarity=0.214  Sum_probs=152.7

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203           74 FEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (768)
                      ..+...+...|++++.++.++++|++..     ++.+|++.|..+.|....+.|++.++|++||+||.+++..+..+. -
T Consensus       105 ~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~  183 (334)
T KOG0278|consen  105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-F  183 (334)
T ss_pred             eEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-c
Confidence            3445667889999999999999999865     578999999999999999999999999999999999999999886 4


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~  227 (768)
                      ...|.++..++ ++++|.. ..-+.|++||..+-..++.++.+..|.+...+|+...+++|+.+. ++.||+.+++....
T Consensus       184 ~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~  261 (334)
T KOG0278|consen  184 NSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS  261 (334)
T ss_pred             CCCCcceeecc-CCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence            56799999999 8876554 556689999999999999999999999999999998888888655 99999999987551


Q ss_pred             CeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                        ...+|-++|.+|.|+|||...++++.
T Consensus       262 --~nkgh~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  262 --YNKGHFGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             --cccCCCCceEEEEECCCCceeeccCC
Confidence              24789999999999999996555554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.61  E-value=1.1e-14  Score=149.63  Aligned_cols=213  Identities=16%  Similarity=0.220  Sum_probs=160.1

Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE--EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203          101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (768)
Q Consensus       101 ~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (768)
                      .++.+|...|.+++|+.||..|++++.|+++++|+++..+..  ...++|++.|..++|+|...+++++++.|++|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            457789999999999999999999999999999999877544  345789999999999998999999999999999999


Q ss_pred             CCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeC
Q 004203          179 ASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (768)
Q Consensus       179 l~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svw  257 (768)
                      ++++++...+...+.-..+.|+|+|++++++. ++.|.+.|.++.+...    .......+..+.|+-++..++.+.+..
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN----EEQFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee----hhcccceeeeeeecCCCCEEEEecCCc
Confidence            99999999988777777899999999999999 5569999998876433    333456678889998887766665422


Q ss_pred             CcC--CCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEec
Q 004203          258 DLD--SSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQS  335 (768)
Q Consensus       258 dl~--sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~  335 (768)
                      .+.  .......+.+.+.                            .+..++-..|+|||++++.+..|.          
T Consensus       170 ~v~ILsypsLkpv~si~A----------------------------H~snCicI~f~p~GryfA~GsADA----------  211 (313)
T KOG1407|consen  170 CVEILSYPSLKPVQSIKA----------------------------HPSNCICIEFDPDGRYFATGSADA----------  211 (313)
T ss_pred             eEEEEecccccccccccc----------------------------CCcceEEEEECCCCceEeeccccc----------
Confidence            211  1111122222222                            234566779999999999743322          


Q ss_pred             cCCCceeeeecccCCCCCcCceeccCC
Q 004203          336 LRSSSSVRLLTYSTPSGQYELVLSPIA  362 (768)
Q Consensus       336 ~~ss~~~rl~~~~~~t~~~~~~v~P~~  362 (768)
                             ....|+....-....++=+|
T Consensus       212 -------lvSLWD~~ELiC~R~isRld  231 (313)
T KOG1407|consen  212 -------LVSLWDVDELICERCISRLD  231 (313)
T ss_pred             -------eeeccChhHhhhheeecccc
Confidence                   34455555555555555555

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.8e-14  Score=147.02  Aligned_cols=167  Identities=17%  Similarity=0.177  Sum_probs=137.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCe--EEEEEecC
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGS--CLKVLHGH  148 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH  148 (768)
                      -+++|++++.|++|+++.....       +|.+|.++|..++|..  -|.+||+++.||+|.||.-++|+  .......|
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h  101 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH  101 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence            4789999999999999998754       5889999999999987  89999999999999999988774  23456789


Q ss_pred             CCCcEEEEEccCC-CCEEEEEeCCCeEEEEECCCC-c-E--EEEecCCCCeEEEEEcCC---C-----------CEEEEE
Q 004203          149 RRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTA-E-C--IGSRDFYRPIASIAFHAS---G-----------ELLAVA  209 (768)
Q Consensus       149 ~g~V~sVafSP~d-g~lLaSgS~DgtVrLWDl~sg-~-~--i~~l~h~~~V~svafSPD---G-----------~~Latg  209 (768)
                      ...|++++|.|.+ +-.|++++.||.|.|.+.++. . .  .....|.-.|++++|.|.   |           +.|++|
T Consensus       102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg  181 (299)
T KOG1332|consen  102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG  181 (299)
T ss_pred             cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc
Confidence            9999999999943 347888999999999998864 2 1  222468889999999996   5           568888


Q ss_pred             ECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCC
Q 004203          210 SGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA  247 (768)
Q Consensus       210 Sdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG  247 (768)
                      +.| .|+||+.....-.. ...+.+|.+.|+.++|.|.-
T Consensus       182 GcDn~VkiW~~~~~~w~~-e~~l~~H~dwVRDVAwaP~~  219 (299)
T KOG1332|consen  182 GCDNLVKIWKFDSDSWKL-ERTLEGHKDWVRDVAWAPSV  219 (299)
T ss_pred             CCccceeeeecCCcchhh-hhhhhhcchhhhhhhhcccc
Confidence            855 49999998874433 23478899999999999975

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.61  E-value=2.5e-15  Score=162.02  Aligned_cols=175  Identities=15%  Similarity=0.193  Sum_probs=147.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           79 DARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      .+...+++++.|..|++|+....      .|.+-.++|++++|.+++++++++++|+.+++|++...+...+|.||++.|
T Consensus       185 ~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkV  264 (459)
T KOG0288|consen  185 RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKV  264 (459)
T ss_pred             cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccce
Confidence            45678999999999999998754      467788899999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEe
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIV  231 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l  231 (768)
                      +++.|.- +...+++|+.|.+|++||+....|.++.-....+..++.+  ...++++- |.+|++||.+......   .+
T Consensus       265 t~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~---sv  338 (459)
T KOG0288|consen  265 TAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR---SV  338 (459)
T ss_pred             eeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceee---Ee
Confidence            9999988 5555999999999999999999999887777777777766  33444444 4559999999987644   33


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203          232 LRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~LlaS~svwdl~  260 (768)
                      . ..+.|+++..+++|..+++++..+.+.
T Consensus       339 ~-~gg~vtSl~ls~~g~~lLsssRDdtl~  366 (459)
T KOG0288|consen  339 P-LGGRVTSLDLSMDGLELLSSSRDDTLK  366 (459)
T ss_pred             e-cCcceeeEeeccCCeEEeeecCCCcee
Confidence            3 345999999999999998887655443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=1.6e-14  Score=155.60  Aligned_cols=149  Identities=18%  Similarity=0.190  Sum_probs=127.9

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (768)
                      .+..|+..|.-+.||++|++||+++.|.+..+|++...   +..+++.+|..+|..+.||| |.+++++++.|..+++||
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeecc
Confidence            47789999999999999999999999999999987543   34688899999999999999 889999999999999999


Q ss_pred             CCCCcEEEEecCC--CCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecC-CCCeEEEEEccCCCeEEEEE
Q 004203          179 ASTAECIGSRDFY--RPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       179 l~sg~~i~~l~h~--~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h-~~~V~sVaFSPDG~~LlaS~  254 (768)
                      +.+|++...+.+.  ..+.+++|.|||..+++|+-+ +|..||++......    ..+. ...|.+++.++||+++++.+
T Consensus       298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~----W~gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN----WEGVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc----ccccccceeEEEEEcCCCcEEEEEe
Confidence            9999998887654  789999999999999999954 59999998765322    2222 24699999999999998877


Q ss_pred             e
Q 004203          255 E  255 (768)
Q Consensus       255 s  255 (768)
                      .
T Consensus       374 ~  374 (519)
T KOG0293|consen  374 V  374 (519)
T ss_pred             c
Confidence            4

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.60  E-value=1.5e-14  Score=161.69  Aligned_cols=257  Identities=17%  Similarity=0.175  Sum_probs=176.2

Q ss_pred             CCCcceecccccccccCCCccccceeecCCc--ceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-CCC----
Q 004203           32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGET--ARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-PLS----  104 (768)
Q Consensus        32 ssk~rnIf~~~akrEis~~~~kv~k~~wd~s--~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~-~L~----  104 (768)
                      .+|||++-+....+..-+.+.+.........  ..+++           .....+--.+..|.|-++++... +|.    
T Consensus       553 iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan-----------~~rvAVPL~g~gG~iai~el~~PGrLPDgv~  621 (1012)
T KOG1445|consen  553 ISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCAN-----------NKRVAVPLAGSGGVIAIYELNEPGRLPDGVM  621 (1012)
T ss_pred             chheeeccCccccchhhhhhhhcccccCCCccCceeec-----------cceEEEEecCCCceEEEEEcCCCCCCCcccc
Confidence            4667777666666654444444433322211  11111           11111122345788999998753 322    


Q ss_pred             ---CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCe
Q 004203          105 ---PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE  173 (768)
Q Consensus       105 ---gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dgt  173 (768)
                         .....|+++.|+| |...|+++++||.|++|.+..+       .....+++|...|+++.|||.-.+.|++++.|-+
T Consensus       622 p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T  701 (1012)
T KOG1445|consen  622 PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST  701 (1012)
T ss_pred             cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence               3456799999999 9999999999999999998654       3457889999999999999988899999999999


Q ss_pred             EEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecC--CCCeEEEEEccCCCe
Q 004203          174 VRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAP  249 (768)
Q Consensus       174 VrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPDG~~  249 (768)
                      |+|||+++++.... .+|.+.|..++|+|||+.+++.+ |++|++|+-++.+...   .....  ...--.|.|.-||++
T Consensus       702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv---~Eg~gpvgtRgARi~wacdgr~  778 (1012)
T KOG1445|consen  702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV---YEGKGPVGTRGARILWACDGRI  778 (1012)
T ss_pred             eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc---ccCCCCccCcceeEEEEecCcE
Confidence            99999999887655 47999999999999999999998 5669999998876522   11111  122245778889998


Q ss_pred             EEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203          250 LLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (768)
Q Consensus       250 LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~  321 (768)
                      +++++-...-                   .+.+.+.+.+.-+...|.+..-+..-..+.|.|.+|...+.+.
T Consensus       779 viv~Gfdk~S-------------------eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lflt  831 (1012)
T KOG1445|consen  779 VIVVGFDKSS-------------------ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLT  831 (1012)
T ss_pred             EEEecccccc-------------------hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEe
Confidence            8877632211                   1123333333334445555555555567788899998877763

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.60  E-value=1.1e-14  Score=157.20  Aligned_cols=180  Identities=17%  Similarity=0.182  Sum_probs=148.4

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ...+..+++.+.|+.+++|+....    +|.+|++.|+++.|......+++|+.|.+||+||+....|.+++. ....+.
T Consensus       228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cn  306 (459)
T KOG0288|consen  228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCN  306 (459)
T ss_pred             cCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-cccccc
Confidence            346788889999999999999876    688999999999999877779999999999999999988887764 345567


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEee
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVL  232 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~  232 (768)
                      .|..+   ...++||-.|++|++||+++..+.......+.|+++..+++|..|.+.+ |+.+.++|+++.+... ++...
T Consensus       307 DI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~-~~sA~  382 (459)
T KOG0288|consen  307 DIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ-TFSAE  382 (459)
T ss_pred             ceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEE-Eeecc
Confidence            77765   4778999999999999999999999999889999999999999888777 6779999999987543 22222


Q ss_pred             c--CCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203          233 R--TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (768)
Q Consensus       233 ~--h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg  262 (768)
                      +  ....++.+.|||++.|+++++.     +|++..+
T Consensus       383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             ccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence            1  2345899999999998887764     5555443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.59  E-value=4e-14  Score=163.56  Aligned_cols=181  Identities=20%  Similarity=0.278  Sum_probs=152.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      ..+..+++|+.|.++++||..++    .+.+|...|.++...  +.++++|+.|.+|++|+++++.++..+.+|.++|++
T Consensus       259 ~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~  336 (537)
T KOG0274|consen  259 SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNC  336 (537)
T ss_pred             cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEE
Confidence            35889999999999999998876    588999999999876  568888999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC-ccccCCeEe
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR-EETSSPRIV  231 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~-~~~~~~~~l  231 (768)
                      +..+   +.++++|+.|++|++||+.+++++..+ +|...|.++.+... ..++.|+-|+ |++||+++. +...   .+
T Consensus       337 v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~---tl  409 (537)
T KOG0274|consen  337 VQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH---TL  409 (537)
T ss_pred             EEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh---hh
Confidence            9984   799999999999999999999999986 59999999988766 8888888545 999999998 6544   66


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEee
Q 004203          232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT  270 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t  270 (768)
                      .+|..-|..+.+  .++.|+.+..     +||...++....+.+
T Consensus       410 ~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  410 QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             cCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence            777777766665  4565555443     777776666666554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.58  E-value=5.6e-14  Score=149.90  Aligned_cols=159  Identities=18%  Similarity=0.297  Sum_probs=141.6

Q ss_pred             CCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 004203          100 YCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (768)
Q Consensus       100 t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (768)
                      ...|..|+..|.+++.+|+.+++++|+.|-.-.+|++.+|+....+.+|+..|.++.|+. ++.+||+|..+|.|+||+.
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEc
Confidence            346788999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             CCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe--
Q 004203          180 STAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--  255 (768)
Q Consensus       180 ~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s--  255 (768)
                      .++..+..+. .-..+.-+.|||.+.+|+.|+.++ +.+|.+.++...   ..+.+|..++++=.|.|||+.+++...  
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~---kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg  212 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC---KVMSGHNSPCTCGEFIPDGKRILTGYDDG  212 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee---eEecCCCCCcccccccCCCceEEEEecCc
Confidence            9999888875 556788899999999999999655 999999987543   367889999999999999998887654  


Q ss_pred             ---eCCcCCC
Q 004203          256 ---VNDLDSS  262 (768)
Q Consensus       256 ---vwdl~sg  262 (768)
                         +|+..++
T Consensus       213 ti~~Wn~ktg  222 (399)
T KOG0296|consen  213 TIIVWNPKTG  222 (399)
T ss_pred             eEEEEecCCC
Confidence               6666554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.58  E-value=9.6e-14  Score=144.69  Aligned_cols=176  Identities=17%  Similarity=0.195  Sum_probs=144.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC-------------------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP-------------------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT  138 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~-------------------L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~t  138 (768)
                      ..++++++|+.|++|-+||++.-.                   -.+|+-.|.++.|-| |...|.+++.|.++||||..|
T Consensus        54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT  133 (397)
T KOG4283|consen   54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT  133 (397)
T ss_pred             ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence            468999999999999999997431                   236888999999999 888999999999999999999


Q ss_pred             CeEEEEEecCCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCE-EEEEE-CCe
Q 004203          139 GSCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGEL-LAVAS-GHK  213 (768)
Q Consensus       139 g~~l~~l~gH~g~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~-LatgS-dd~  213 (768)
                      -+....|+ ..+.|++-+|+|-.  ..++|+|.+|-.|+|.|+.+|.+..++ +|.+.|.++.|+|...+ |++|+ |+.
T Consensus       134 lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~  212 (397)
T KOG4283|consen  134 LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA  212 (397)
T ss_pred             ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence            99888886 45679988998843  347888999999999999999999886 59999999999999885 56666 555


Q ss_pred             EEEEEcCCCcc----------ccCC--eEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          214 LYIWRYNMREE----------TSSP--RIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       214 I~IWDl~t~~~----------~~~~--~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |++||++....          ...+  ..-..|.+.|+.++|+.||.++++.+.
T Consensus       213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            99999987521          1111  113457789999999999999887665

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.58  E-value=5.3e-14  Score=158.47  Aligned_cols=172  Identities=17%  Similarity=0.262  Sum_probs=150.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEE-CCCCCEEEEEeCCCeEEEEeCCCCe--EE--------
Q 004203           80 ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAF-SPDGKTLASTHGDHTVKIIDCQTGS--CL--------  142 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~Vtslaf-SPDG~~LaSgS~DgtVrVWDl~tg~--~l--------  142 (768)
                      .+..++|++.|.+|++|+....      ++..|+..|.|+++ -++..++|+|+-|+.|.+||++++.  .+        
T Consensus        84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            5678999999999999998755      57899999999999 8899999999999999999999872  22        


Q ss_pred             EEEe-cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc
Q 004203          143 KVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRY  219 (768)
Q Consensus       143 ~~l~-gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl  219 (768)
                      ..+. |+...|++++.++ .+..|++|+..+.|++||-++++.+.. .+|...|..+..++||..+++++ |+.|++||+
T Consensus       164 ~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL  242 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL  242 (735)
T ss_pred             ccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence            2223 8889999999999 889999999999999999999876555 57999999999999999999888 555999999


Q ss_pred             CCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ....+..   .+..|...|+++..+|+-..+.++++
T Consensus       243 gqQrCl~---T~~vH~e~VWaL~~~~sf~~vYsG~r  275 (735)
T KOG0308|consen  243 GQQRCLA---TYIVHKEGVWALQSSPSFTHVYSGGR  275 (735)
T ss_pred             cccceee---eEEeccCceEEEeeCCCcceEEecCC
Confidence            9888754   67789999999999999988887776

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=5.4e-14  Score=153.76  Aligned_cols=200  Identities=17%  Similarity=0.155  Sum_probs=161.7

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC---------CC
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---------TG  139 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~---------tg  139 (768)
                      ...+....+..|+.+...+.|.+|.+.++.    +..|-..|+++.|+-||.+|++||.||.|.+|++-         +-
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~  164 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV  164 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence            334455667778888799999999999994    56899999999999999999999999999999762         23


Q ss_pred             eEEEEEecCCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEE
Q 004203          140 SCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYI  216 (768)
Q Consensus       140 ~~l~~l~gH~g~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~I  216 (768)
                      +++..|..|+-+|+++...+ +  ..++++++.|.++++||+..|..+.++..+..+.+++.+|-+..+++|+. |+|.+
T Consensus       165 ~p~~~f~~HtlsITDl~ig~-Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~  243 (476)
T KOG0646|consen  165 KPLHIFSDHTLSITDLQIGS-GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQ  243 (476)
T ss_pred             cceeeeccCcceeEEEEecC-CCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEe
Confidence            57789999999999998877 4  35899999999999999999999999999999999999999999999985 55877


Q ss_pred             EEcCCCcc-------------ccCCeEeecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCC
Q 004203          217 WRYNMREE-------------TSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG  273 (768)
Q Consensus       217 WDl~t~~~-------------~~~~~~l~~h~~--~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G  273 (768)
                      .++.+...             ......+.+|..  .|++++.+-||..|+++..     +||+.+....+++.+..|
T Consensus       244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg  320 (476)
T KOG0646|consen  244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG  320 (476)
T ss_pred             eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc
Confidence            77654320             011234556766  9999999999997766654     788776666666654444

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=6.8e-14  Score=147.07  Aligned_cols=179  Identities=18%  Similarity=0.211  Sum_probs=142.2

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC---CCC-----e
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC---QTG-----S  140 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~----gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl---~tg-----~  140 (768)
                      +-....++...|++++.|..|.+|+++ +++.    .....-+.++.||+|++|++++..-.|++|..   +.|     .
T Consensus       191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~  269 (420)
T KOG2096|consen  191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVK  269 (420)
T ss_pred             EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhh
Confidence            335566788999999999999999998 4333    33445678999999999999999999999986   233     2


Q ss_pred             EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC----c---EEEEe-----cCCCCeEEEEEcCCCCEEEE
Q 004203          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA----E---CIGSR-----DFYRPIASIAFHASGELLAV  208 (768)
Q Consensus       141 ~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg----~---~i~~l-----~h~~~V~svafSPDG~~Lat  208 (768)
                      .+..++||...|..++|++ +...+++.+.||+++|||+.-.    +   .++..     ...+.-..++.+|.|+.|+.
T Consensus       270 rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~  348 (420)
T KOG2096|consen  270 RVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV  348 (420)
T ss_pred             hhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence            4567899999999999999 9999999999999999998631    1   22221     11233348999999999999


Q ss_pred             EECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          209 ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       209 gSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +.+..++++..++++..  +.....|...|.+++|+++|+++++.+.
T Consensus       349 s~gs~l~~~~se~g~~~--~~~e~~h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  349 SFGSDLKVFASEDGKDY--PELEDIHSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             ecCCceEEEEcccCccc--hhHHHhhcCceeeEEecCCCcEEeeecc
Confidence            98888999999887653  2334458899999999999998777664

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.57  E-value=3.6e-14  Score=154.37  Aligned_cols=174  Identities=18%  Similarity=0.228  Sum_probs=147.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------C------------------CCCCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-------P------------------LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKI  133 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-------~------------------L~gH~~~VtslafSPD-G~~LaSgS~DgtVrV  133 (768)
                      .+.+++.|..|-.|.+||+...       +                  -.+|+..|.+++|+.+ ...||+||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            4568999999999999998732       1                  1269999999999984 468899999999999


Q ss_pred             EeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCeEEEEEcCCCCEEEE-EEC
Q 004203          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRDFYRPIASIAFHASGELLAV-ASG  211 (768)
Q Consensus       134 WDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~l~h~~~V~svafSPDG~~Lat-gSd  211 (768)
                      ||+.+|++..++..|++.|.++.|+|....+|++|+.|++|.|.|.+... .-..+...+.|..++|+|.....+. +++
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            99999999999999999999999999999999999999999999999533 3345778899999999998875444 444


Q ss_pred             -CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          212 -HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       212 -d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                       |.++-+|+|....  ....+..|...|.++++++.-..++++++
T Consensus       351 dG~v~~~D~R~~~~--~vwt~~AHd~~ISgl~~n~~~p~~l~t~s  393 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGK--PVWTLKAHDDEISGLSVNIQTPGLLSTAS  393 (463)
T ss_pred             CceEEeeecCCCCC--ceeEEEeccCCcceEEecCCCCcceeecc
Confidence             5599999998864  34577889999999999999988888765

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.57  E-value=5.6e-14  Score=147.35  Aligned_cols=183  Identities=17%  Similarity=0.244  Sum_probs=154.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC------CC----------
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC------QT----------  138 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl------~t----------  138 (768)
                      .....+.+.+.|.+-++|.++++    ++.||.+.|+++.|++.+.++++++.|++-.||..      ..          
T Consensus       158 ~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE  237 (481)
T KOG0300|consen  158 STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE  237 (481)
T ss_pred             cCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence            34556678899999999999987    68899999999999999999999999999999962      00          


Q ss_pred             --------------------C----eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCC
Q 004203          139 --------------------G----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRP  193 (768)
Q Consensus       139 --------------------g----~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~  193 (768)
                                          +    .++..|++|.+.|.+..|-. +++.+++++.|.+..+||+++|+.+..+ +|...
T Consensus       238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E  316 (481)
T KOG0300|consen  238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSE  316 (481)
T ss_pred             hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchh
Confidence                                0    13567789999999999998 9999999999999999999999999885 68889


Q ss_pred             eEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcc
Q 004203          194 IASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS  265 (768)
Q Consensus       194 V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~  265 (768)
                      .+-++-+|..+++++.+.|. .++||++..  +.....+.+|...|+++.|.-|.+ +++++.     +|++++-+.+
T Consensus       317 LtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsp  391 (481)
T KOG0300|consen  317 LTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSP  391 (481)
T ss_pred             ccccccCCcceEEEEeccCceeEeccchhh--cceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCc
Confidence            99999999999999999666 999999843  334456788999999999999887 565543     8888865543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=8.8e-14  Score=161.61  Aligned_cols=189  Identities=16%  Similarity=0.208  Sum_probs=154.3

Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 004203           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (768)
Q Consensus        71 ~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (768)
                      +....+.......+++++.++.|+++....++    +...+-++.+++|+-+|+++|.||.|..|++.++.+....+.++
T Consensus        56 g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr  135 (933)
T KOG1274|consen   56 GELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR  135 (933)
T ss_pred             CceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec
Confidence            34455555566799999999999999988663    44567789999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCCeEEEEEcCCC-CEEEEEECCeEEE
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHASG-ELLAVASGHKLYI  216 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---------h~~~V~svafSPDG-~~LatgSdd~I~I  216 (768)
                      +|.++|.++.|+| .+++||+.+-||.|++||+.++.+..++.         ....+..++|+|+| ++++.+.++.|++
T Consensus       136 gh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv  214 (933)
T KOG1274|consen  136 GHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV  214 (933)
T ss_pred             ccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence            9999999999999 99999999999999999999998766642         13467789999995 5666666888999


Q ss_pred             EEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004203          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (768)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~s  261 (768)
                      |+.......-.. ....+...+..++|+|+|+||+++..     +||+++
T Consensus       215 y~r~~we~~f~L-r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  215 YSRKGWELQFKL-RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EccCCceeheee-cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            998887653311 11123344999999999999998775     777763

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.55  E-value=6.7e-14  Score=165.22  Aligned_cols=238  Identities=17%  Similarity=0.145  Sum_probs=172.8

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCC------C----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeE
Q 004203           74 FEAGRDARRGLASWVEAESLHHLRPKY------C----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTV  131 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t------~----------------~L~gH~~~VtslafSPDG~~LaSgS~DgtV  131 (768)
                      .+-...++.+|++|++|+.|.+|....      +                .|.+|...|.+++|+||+.+|++++.|++|
T Consensus        74 CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV  153 (942)
T KOG0973|consen   74 CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV  153 (942)
T ss_pred             EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceE
Confidence            333557899999999999999999872      0                367899999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-------CCCCeEEEEEcCCCC
Q 004203          132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------FYRPIASIAFHASGE  204 (768)
Q Consensus       132 rVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-------h~~~V~svafSPDG~  204 (768)
                      .|||..+.+.++.+++|.+.|-.+.|.| -|++||+-+.|++|++|++.+....+.+.       ....+..+.|+|||+
T Consensus       154 iiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~  232 (942)
T KOG0973|consen  154 IIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH  232 (942)
T ss_pred             EEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence            9999999999999999999999999999 99999999999999999987765555532       234678899999999


Q ss_pred             EEEEEE--CC-e--EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEee-CCcCC-CCcceeEeecCCcccC
Q 004203          205 LLAVAS--GH-K--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEV-NDLDS-SESSLTLATSPGYWRY  277 (768)
Q Consensus       205 ~LatgS--dd-~--I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~sv-wdl~s-g~~~~~L~t~~G~~~~  277 (768)
                      +|++..  .+ +  +.|.+-.+-+..   ..+.+|..++..+.|+|.=    +-... +.... .+....+....+    
T Consensus       233 ~las~nA~n~~~~~~~IieR~tWk~~---~~LvGH~~p~evvrFnP~l----fe~~~~ng~~~~~~~~y~i~AvgS----  301 (942)
T KOG0973|consen  233 HLASPNAVNGGKSTIAIIERGTWKVD---KDLVGHSAPVEVVRFNPKL----FERNNKNGTSTQPNCYYCIAAVGS----  301 (942)
T ss_pred             eecchhhccCCcceeEEEecCCceee---eeeecCCCceEEEEeChHH----hccccccCCccCCCcceEEEEEec----
Confidence            999886  22 2  888887666543   3688999999999999930    00000 00000 000011111111    


Q ss_pred             CCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCC
Q 004203          278 PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH  325 (768)
Q Consensus       278 p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~  325 (768)
                      ....+.+|........-+.  .......+.-.+|+|||-.|.+--.|.
T Consensus       302 qDrSlSVW~T~~~RPl~vi--~~lf~~SI~DmsWspdG~~LfacS~DG  347 (942)
T KOG0973|consen  302 QDRSLSVWNTALPRPLFVI--HNLFNKSIVDMSWSPDGFSLFACSLDG  347 (942)
T ss_pred             CCccEEEEecCCCCchhhh--hhhhcCceeeeeEcCCCCeEEEEecCC
Confidence            1245777775443333322  223344566788999988777654433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.55  E-value=2.8e-13  Score=148.07  Aligned_cols=180  Identities=17%  Similarity=0.146  Sum_probs=145.8

Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 004203           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (768)
Q Consensus        71 ~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (768)
                      ..+..+.+.++++|+++..|..|.+|+.++.    .+++|.+.|.+++|-..-..|++++.|+.|++|+++....+.++.
T Consensus       204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly  283 (479)
T KOG0299|consen  204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY  283 (479)
T ss_pred             eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence            3566777889999999999999999999987    478999999999999888899999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~  225 (768)
                      ||...|..+.-.. -++.+-.|++|++++||++.....+...++.+.+.|++|-.+ .++++|++++ |.+|++.+.+..
T Consensus       284 GHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl  361 (479)
T KOG0299|consen  284 GHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL  361 (479)
T ss_pred             CCccceeeechhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence            9999999888766 455555567999999999965555555678889999999855 5677888655 999999887642


Q ss_pred             cCCeEeec-----------CCCCeEEEEEccCCCeEEEEE
Q 004203          226 SSPRIVLR-----------TRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       226 ~~~~~l~~-----------h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      -  .....           +..+|++++..|....+++++
T Consensus       362 f--~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS  399 (479)
T KOG0299|consen  362 F--TSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS  399 (479)
T ss_pred             e--EeeccccccCCccccccccceeeeEecccCceEEecC
Confidence            2  11111           123899999999888555444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.5e-12  Score=147.38  Aligned_cols=224  Identities=13%  Similarity=0.134  Sum_probs=151.9

Q ss_pred             CeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCE
Q 004203           91 ESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI  164 (768)
Q Consensus        91 gsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~l  164 (768)
                      ..|.+||....   ++..|...+...+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+....|+| |++.
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-DG~~  259 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-DGRK  259 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-CCCE
Confidence            36888887654   36678889999999999999988764   578999999988753 4455666777889999 7766


Q ss_pred             EE-EEeCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEeecCCCC
Q 004203          165 IA-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRS  237 (768)
Q Consensus       165 La-SgS~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~~~~~~~~~l~~h~~~  237 (768)
                      |+ +.+.++  .|++||+.+++......+........|+|||+.|++.++.    .|++||+..+...    .+..+...
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~~~~  335 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----RISFGGGR  335 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE----EeecCCCc
Confidence            54 556555  4888899988876655566666789999999999988843    2888898765432    23334455


Q ss_pred             eEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCE
Q 004203          238 LRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER  317 (768)
Q Consensus       238 V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~r  317 (768)
                      +....|+|||++|++......    .                ..+.+++..... ..+....    .....|.|+|||+.
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~----~----------------~~i~~~d~~~~~-~~~lt~~----~~~~~p~~spDG~~  390 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGG----Q----------------FSIGVMKPDGSG-ERILTSG----FLVEGPTWAPNGRV  390 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCC----c----------------eEEEEEECCCCc-eEeccCC----CCCCCCeECCCCCE
Confidence            677899999999887653111    0                022333321111 1111110    11336899999999


Q ss_pred             EEEEecCCCCC--cceEEeccCCCceeeee
Q 004203          318 ISLQHTEHDSG--ATRTQQSLRSSSSVRLL  345 (768)
Q Consensus       318 Iv~~~~d~~~G--s~~~~~~~~ss~~~rl~  345 (768)
                      |++...+....  ..++..++++...++++
T Consensus       391 i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        391 IMFFRQTPGSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             EEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence            99986654332  46777777666555443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.55  E-value=2.8e-13  Score=143.08  Aligned_cols=142  Identities=27%  Similarity=0.441  Sum_probs=120.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCC----CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDG----KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~VtslafSPDG----~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      .....|+.+-.|+-+++......  ..|.+....++|+-|-    .++|.++.-|.|+|.|+.++++...+.+|++.|+.
T Consensus        63 ~~rvtiy~c~~d~~ir~lq~y~D--~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINe  140 (385)
T KOG1034|consen   63 GNRVTIYECPGDGGIRLLQSYAD--EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINE  140 (385)
T ss_pred             CcEEEEEEECCccceeeeeeccC--CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchh
Confidence            34445556666665555554322  2588889999998753    47889999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec----CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR  222 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~----h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~  222 (768)
                      +.|+|+..++++++|.|.+||+||+++..|+..++    |.+.|.++.|+++|.+|++++ |..|++|++...
T Consensus       141 ik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  141 IKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             hhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            99999888999999999999999999999999874    899999999999999999988 555999999854

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=1.6e-12  Score=136.60  Aligned_cols=170  Identities=18%  Similarity=0.226  Sum_probs=135.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L---~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ..+..|+..++||++++||.....+   -.|..++.+++|.+ ...+++|+-||.|+++|+.+++.. .+..|...|+++
T Consensus        23 ~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci  100 (323)
T KOG1036|consen   23 PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCI  100 (323)
T ss_pred             CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEE
Confidence            4566777777999999999987643   36999999999995 678899999999999999998754 455699999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecC
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRT  234 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h  234 (768)
                      ..++ ....+++|+.|++|++||.+.......+.....|.++..  .|..|++|+.+ ++.+||+++..... ......-
T Consensus       101 ~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~-q~reS~l  176 (323)
T KOG1036|consen  101 EYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF-QRRESSL  176 (323)
T ss_pred             Eeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh-hhccccc
Confidence            9999 888999999999999999998767777777778887765  47788887754 59999999876532 1112233


Q ss_pred             CCCeEEEEEccCCCeEEEEE
Q 004203          235 RRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       235 ~~~V~sVaFSPDG~~LlaS~  254 (768)
                      +-.+++|++-|++.-+++++
T Consensus       177 kyqtR~v~~~pn~eGy~~sS  196 (323)
T KOG1036|consen  177 KYQTRCVALVPNGEGYVVSS  196 (323)
T ss_pred             eeEEEEEEEecCCCceEEEe
Confidence            56789999999776555544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=5e-13  Score=135.07  Aligned_cols=178  Identities=24%  Similarity=0.355  Sum_probs=146.7

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCC--CC-------CCCCCCCCeEEEEECCC----CCEEEEEeC-CCeEEEEeCCC
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPK--YC-------PLSPPPRSTIAAAFSPD----GKTLASTHG-DHTVKIIDCQT  138 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~--t~-------~L~gH~~~VtslafSPD----G~~LaSgS~-DgtVrVWDl~t  138 (768)
                      ...+.+..+..|+++++|+.|++....  ++       +|.-|.+.|.+++|-.|    |.+|++++. |..|++-|..+
T Consensus        93 yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~  172 (350)
T KOG0641|consen   93 YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR  172 (350)
T ss_pred             EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence            344555678899999999999887554  44       35568999999999753    456777654 88899999999


Q ss_pred             CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---C-----CCCeEEEEEcCCCCEEEEEE
Q 004203          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---F-----YRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       139 g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---h-----~~~V~svafSPDG~~LatgS  210 (768)
                      |+....+.||++-|..+ ++- ++..+++|+.|++|++||++-..++.+++   |     ...|.+++..|.|++|++|-
T Consensus       173 g~~~~a~sghtghilal-ysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~  250 (350)
T KOG0641|consen  173 GQGFHALSGHTGHILAL-YSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH  250 (350)
T ss_pred             CCcceeecCCcccEEEE-EEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence            99999999999998764 222 78999999999999999999999988864   2     24789999999999999998


Q ss_pred             CCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          211 GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       211 dd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .+. ..+||++.+..++   .+..|...|+++.|+|...|+++.+-
T Consensus       251 ~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a~yllt~sy  293 (350)
T KOG0641|consen  251 ADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGAHYLLTCSY  293 (350)
T ss_pred             CCCceEEEEeeCCceee---eeCCCccceeEEEeCCCceEEEEecc
Confidence            665 9999999998755   67789999999999999888776654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.1e-12  Score=138.28  Aligned_cols=175  Identities=16%  Similarity=0.201  Sum_probs=137.8

Q ss_pred             CCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCE
Q 004203           89 EAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI  164 (768)
Q Consensus        89 ~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~l  164 (768)
                      .|.+|+..++.+.    -|.||+..|++++.+|-+..|++++.|++|++||++..++...+.-...++  ++|.| .|-+
T Consensus        78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp-~GLi  154 (311)
T KOG1446|consen   78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDP-EGLI  154 (311)
T ss_pred             CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECC-CCcE
Confidence            4788999999876    488999999999999988999999999999999999988888776544444  69999 9999


Q ss_pred             EEEEeCCCeEEEEECCCC--cEEEEec----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCC--
Q 004203          165 IASGSLDHEVRLWNASTA--ECIGSRD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTR--  235 (768)
Q Consensus       165 LaSgS~DgtVrLWDl~sg--~~i~~l~----h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~--  235 (768)
                      +|.+.....|+|||+++-  .+..++.    .....+.+.|+|||+.|+.++++. +++.|.-++....   .+..+.  
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~---tfs~~~~~  231 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS---TFSGYPNA  231 (311)
T ss_pred             EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee---eEeeccCC
Confidence            999988889999999963  3444443    345789999999999988888655 9999998887543   333332  


Q ss_pred             -CCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004203          236 -RSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (768)
Q Consensus       236 -~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~  269 (768)
                       .---+..|+||+++++.++.     +|++.++.....+.
T Consensus       232 ~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~  271 (311)
T KOG1446|consen  232 GNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR  271 (311)
T ss_pred             CCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence             22367889999998887765     77776554443333

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.54  E-value=1.3e-13  Score=151.86  Aligned_cols=175  Identities=18%  Similarity=0.255  Sum_probs=128.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCe-E
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS-C  141 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----------------~L~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg~-~  141 (768)
                      .+..|+..+-.-..+++|-...                ..+||...++|.+|+|+ ...|++++.|+++||||++.-+ .
T Consensus       225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q  304 (641)
T KOG0772|consen  225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ  304 (641)
T ss_pred             CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence            4445555555556666665421                35799999999999994 5688999999999999997654 3


Q ss_pred             EEEEe-----cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE--EE--EecCCC--CeEEEEEcCCCCEEEEEE
Q 004203          142 LKVLH-----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--IG--SRDFYR--PIASIAFHASGELLAVAS  210 (768)
Q Consensus       142 l~~l~-----gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~--i~--~l~h~~--~V~svafSPDG~~LatgS  210 (768)
                      +.+|+     +..-.+..++|+| ++++||.|+.||.|.+||..+...  ..  .-+|..  .|+++.|++||++|++-+
T Consensus       305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence            34443     2233578899999 999999999999999999865322  11  124665  899999999999999988


Q ss_pred             -CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          211 -GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       211 -dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                       |+.+++||++..+.......-......-+.++|||+.+.|+++.+
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence             566999999987753311122223456678999999997777665

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.53  E-value=5.4e-14  Score=149.88  Aligned_cols=213  Identities=13%  Similarity=0.120  Sum_probs=157.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------------------
Q 004203           82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------------------  138 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-------------------  138 (768)
                      ..+++|+.||.|++||+...    .+..|.+.|.++++..  ..+++++.|.+|+.|-++.                   
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~  157 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR  157 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence            46889999999999999864    6889999999999986  7788999999999997421                   


Q ss_pred             --------Ce-----------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEE
Q 004203          139 --------GS-----------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAF  199 (768)
Q Consensus       139 --------g~-----------~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svaf  199 (768)
                              |+           ++..+.--...|.++.|+|....+|+++..|+.|.|||++++.++...-....-+.++|
T Consensus       158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Isw  237 (433)
T KOG0268|consen  158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICW  237 (433)
T ss_pred             ccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceec
Confidence                    11           12222223456788999997788999999999999999999999888777777789999


Q ss_pred             cCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCC
Q 004203          200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYP  278 (768)
Q Consensus       200 SPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p  278 (768)
                      +|.+-.+++++.|. ++.+|++....  ......+|...|.+|.|||.|+-+++++-+..++      .+....++..  
T Consensus       238 nPeafnF~~a~ED~nlY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR------If~~~~~~SR--  307 (433)
T KOG0268|consen  238 NPEAFNFVAANEDHNLYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR------IFPVNHGHSR--  307 (433)
T ss_pred             Cccccceeeccccccceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEE------EeecCCCcch--
Confidence            99777777777655 99999987765  3345677899999999999999888776444333      1222222211  


Q ss_pred             CCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          279 PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       279 ~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                        .+.          +..     ....++.+.||-|.++|+.+.+
T Consensus       308 --diY----------htk-----RMq~V~~Vk~S~Dskyi~SGSd  335 (433)
T KOG0268|consen  308 --DIY----------HTK-----RMQHVFCVKYSMDSKYIISGSD  335 (433)
T ss_pred             --hhh----------hHh-----hhheeeEEEEeccccEEEecCC
Confidence              111          111     1123457899999999997443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.4e-12  Score=147.55  Aligned_cols=217  Identities=15%  Similarity=0.132  Sum_probs=140.7

Q ss_pred             CCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeE--EEEEecCCCCcEEEEEccCC
Q 004203           90 AESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLN  161 (768)
Q Consensus        90 DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~--l~~l~gH~g~V~sVafSP~d  161 (768)
                      +..|.+||....   .+..|...+....|||||++|+..+.+   ..|++||+++++.  +..+.+|   ...++|+| |
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-D  258 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-D  258 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-C
Confidence            468999998654   356788899999999999999988754   4799999998864  3333443   34689999 8


Q ss_pred             CCEEEEEe-CCCe--EEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEeecCCC
Q 004203          162 PTIIASGS-LDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRR  236 (768)
Q Consensus       162 g~lLaSgS-~Dgt--VrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~l~~h~~  236 (768)
                      ++.|++++ .++.  |++||+.+++......+...+....|+|||+.|++.++  +..+||+++......   ....+..
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~~~  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA---SLVGGRG  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEecCCC
Confidence            88777654 6775  55567777776665566667888999999999888774  447777765433211   1223333


Q ss_pred             CeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCC
Q 004203          237 SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE  316 (768)
Q Consensus       237 ~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~  316 (768)
                        ..+.|+|||+++++.+.. .                       +..++..++....+...     .....|.|+|||+
T Consensus       336 --~~~~~SpDG~~ia~~~~~-~-----------------------i~~~Dl~~g~~~~lt~~-----~~~~~~~~sPdG~  384 (429)
T PRK01742        336 --YSAQISADGKTLVMINGD-N-----------------------VVKQDLTSGSTEVLSST-----FLDESPSISPNGI  384 (429)
T ss_pred             --CCccCCCCCCEEEEEcCC-C-----------------------EEEEECCCCCeEEecCC-----CCCCCceECCCCC
Confidence              457899999988876541 0                       11111111111111000     0112588999999


Q ss_pred             EEEEEecCCCCCcceEEeccCCCceeeee
Q 004203          317 RISLQHTEHDSGATRTQQSLRSSSSVRLL  345 (768)
Q Consensus       317 rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~  345 (768)
                      .|++...+.. ...+.....++...++|+
T Consensus       385 ~i~~~s~~g~-~~~l~~~~~~G~~~~~l~  412 (429)
T PRK01742        385 MIIYSSTQGL-GKVLQLVSADGRFKARLP  412 (429)
T ss_pred             EEEEEEcCCC-ceEEEEEECCCCceEEcc
Confidence            9999765332 234555555666555454

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.52  E-value=2.4e-13  Score=141.75  Aligned_cols=202  Identities=16%  Similarity=0.246  Sum_probs=155.0

Q ss_pred             CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe------------EE---EEEecCCCCcEEEEEccCCCCEEEE
Q 004203          104 SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS------------CL---KVLHGHRRTPWVVRFHPLNPTIIAS  167 (768)
Q Consensus       104 ~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~------------~l---~~l~gH~g~V~sVafSP~dg~lLaS  167 (768)
                      ..|.+.|+++...+ .|+++++|+.||.|.+||++...            ++   .--.+|+-.|..+.|.|.|...+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46999999999999 89999999999999999997642            11   0013677889999999999999999


Q ss_pred             EeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCC---EEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEE
Q 004203          168 GSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE---LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHF  243 (768)
Q Consensus       168 gS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~---~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaF  243 (768)
                      ++.|.++++||..+-+....+..++.|++-+|+|-..   ++|+|.++. |++.|+.++....   .+.+|...|.+|.|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH---~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH---TLSGHRDGVLAVEW  196 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee---eeccccCceEEEEe
Confidence            9999999999999999999999999999999999543   677777665 9999999998654   78899999999999


Q ss_pred             ccCCCeEEEEEe------eCCcCCCC-cceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCC
Q 004203          244 HPHAAPLLLTAE------VNDLDSSE-SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE  316 (768)
Q Consensus       244 SPDG~~LlaS~s------vwdl~sg~-~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~  316 (768)
                      +|...+++++++      .||++... +-..+.-+++  +++ +.+.              .-......+...+|+.||.
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~--k~~-p~~~--------------~n~ah~gkvngla~tSd~~  259 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT--KRP-PILK--------------TNTAHYGKVNGLAWTSDAR  259 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccC--ccC-cccc--------------ccccccceeeeeeecccch
Confidence            999999999876      78887431 2222222221  111 1111              1122233455789999999


Q ss_pred             EEEEEecCC
Q 004203          317 RISLQHTEH  325 (768)
Q Consensus       317 rIv~~~~d~  325 (768)
                      .+....+++
T Consensus       260 ~l~~~gtd~  268 (397)
T KOG4283|consen  260 YLASCGTDD  268 (397)
T ss_pred             hhhhccCcc
Confidence            888754444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=4.2e-12  Score=143.77  Aligned_cols=223  Identities=14%  Similarity=0.111  Sum_probs=148.5

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (768)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL  165 (768)
                      .|.+||.+..   .+..+...+...+|||||+.|+..+.   +..|++||+.+++..... ...+.+..+.|+| |++.|
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SP-DG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSP-DGSKL  257 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECC-CCCEE
Confidence            6888887644   35567778999999999999987653   468999999988643322 2233345689999 88777


Q ss_pred             EEE-eCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC--e--EEEEEcCCCccccCCeEeecCCCCe
Q 004203          166 ASG-SLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       166 aSg-S~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd--~--I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      +.. +.++  .|++||+++++..........+....|+|||+.|++.++.  .  |+++|+.+++..    .+.......
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~~~~~~  333 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITWEGSQN  333 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----EeecCCCCc
Confidence            654 4454  5999999998877666666677889999999999888853  2  666676655432    233344456


Q ss_pred             EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI  318 (768)
                      ....|+|||+++++.......                    ..+.+++..++....+...     .....|.|||||+.|
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~--------------------~~I~~~dl~~g~~~~Lt~~-----~~~~~p~~SpDG~~i  388 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQ--------------------QHIAKQDLATGGVQVLTDT-----FLDETPSIAPNGTMV  388 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCC--------------------ceEEEEECCCCCeEEeCCC-----CCCCCceECCCCCEE
Confidence            678999999998876642210                    0133333322221111110     112368999999999


Q ss_pred             EEEecCCCCCcceEEeccCCCceeeeec
Q 004203          319 SLQHTEHDSGATRTQQSLRSSSSVRLLT  346 (768)
Q Consensus       319 v~~~~d~~~Gs~~~~~~~~ss~~~rl~~  346 (768)
                      ++...+.. ...+...+.++...++|+.
T Consensus       389 ~~~s~~~~-~~~l~~~~~~G~~~~~l~~  415 (429)
T PRK03629        389 IYSSSQGM-GSVLNLVSTDGRFKARLPA  415 (429)
T ss_pred             EEEEcCCC-ceEEEEEECCCCCeEECcc
Confidence            99866443 4566777777777665554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.50  E-value=7.2e-13  Score=139.41  Aligned_cols=146  Identities=23%  Similarity=0.344  Sum_probs=124.3

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCC--EEEEEeCCCeEEEEECC
Q 004203          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT--IIASGSLDHEVRLWNAS  180 (768)
Q Consensus       103 L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~--lLaSgS~DgtVrLWDl~  180 (768)
                      +..|.++|++++.+  |.++++||.|-+|+|||+.+...+..+..|.+.|+++.|.+ .-.  .|++|+.||.|.+|+..
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence            56899999999997  99999999999999999999999999999999999999998 443  89999999999999999


Q ss_pred             CCcEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          181 TAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       181 sg~~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..+++.++. |.+.|+.++.+|.|++-.+.+ |+.+++||+-.++...    ...-...-..|.|+|.|.+++..+.
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~----v~~L~~~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF----VLNLKNKATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce----eeccCCcceeeEEcCCCCEEEEEec
Confidence            999988875 888999999999999766555 5559999998886532    2223334455999999998877765

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.50  E-value=4.1e-13  Score=152.30  Aligned_cols=163  Identities=21%  Similarity=0.239  Sum_probs=136.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF  157 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~--~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVaf  157 (768)
                      ....++|++.|.++++|....+  .+.+|+..|.++++-|++ .++|||.|.+||+|.-  ++.+++|.||+..|+.+++
T Consensus       111 ~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v  187 (745)
T KOG0301|consen  111 EDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV  187 (745)
T ss_pred             CcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence            4444899999999999998766  689999999999999988 8899999999999985  7889999999999999999


Q ss_pred             ccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecC-
Q 004203          158 HPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRT-  234 (768)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h-  234 (768)
                      -+  +..|+|++.||.|++||+ +|+++.. .+|...++++....++..+++++.| +++||+..  +..+    ...+ 
T Consensus       188 l~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q----~I~lP  258 (745)
T KOG0301|consen  188 LD--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQ----VITLP  258 (745)
T ss_pred             ec--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEE----EEecC
Confidence            87  556899999999999999 5666554 6899999999977777888888854 59999977  3222    3334 


Q ss_pred             CCCeEEEEEccCCCeEEEEEe
Q 004203          235 RRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       235 ~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...|+++.+-++|. |+++++
T Consensus       259 ttsiWsa~~L~NgD-Ivvg~S  278 (745)
T KOG0301|consen  259 TTSIWSAKVLLNGD-IVVGGS  278 (745)
T ss_pred             ccceEEEEEeeCCC-EEEecc
Confidence            44899999999999 666665

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=1e-13  Score=164.28  Aligned_cols=182  Identities=19%  Similarity=0.223  Sum_probs=142.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEe--cC
Q 004203           82 RGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVLH--GH  148 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~----------~L~gH~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l~--gH  148 (768)
                      +.|+.|.+||.|.+||...-          ++..|++.|..++|++.+ ++||+|++||.|.|||+..-+.-..+.  ..
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~  160 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP  160 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence            46888999999999998751          467899999999999955 599999999999999998755433331  23


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CCeEEEEEcCCCC-EEEEEECC-e---EEEEEcC
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGE-LLAVASGH-K---LYIWRYN  220 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~---~~V~svafSPDG~-~LatgSdd-~---I~IWDl~  220 (768)
                      ...|.+++|+.....+|++++.+|.+.|||++..+.+..+...   ..+..++|+|++. .|++++++ .   |.+||+|
T Consensus       161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR  240 (1049)
T KOG0307|consen  161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR  240 (1049)
T ss_pred             cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence            4679999999878889999999999999999998777665432   3588999999875 67777743 3   9999999


Q ss_pred             CCccccCCeEeecCCCCeEEEEEccCCCeEEEEE-e-----eCCcCCCCcc
Q 004203          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA-E-----VNDLDSSESS  265 (768)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~-s-----vwdl~sg~~~  265 (768)
                      ......  ..+..|...|.++.|++.+..++.++ .     .|+..+++-.
T Consensus       241 ~assP~--k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl  289 (1049)
T KOG0307|consen  241 FASSPL--KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL  289 (1049)
T ss_pred             ccCCch--hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence            876522  34568999999999999885455544 4     5555554433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=6.5e-12  Score=142.18  Aligned_cols=222  Identities=15%  Similarity=0.142  Sum_probs=146.8

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (768)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL  165 (768)
                      .|.+||....   ++..+...+.+.+|+|||+.|+..+.   +..|++||+.+++... +....+....+.|+| |++.+
T Consensus       185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp-DG~~l  262 (433)
T PRK04922        185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP-DGRRL  262 (433)
T ss_pred             EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC-CCCEE
Confidence            5888987654   46677888999999999999998874   3579999999887543 333444455789999 77655


Q ss_pred             E-EEeCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC--e--EEEEEcCCCccccCCeEeecCCCCe
Q 004203          166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       166 a-SgS~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd--~--I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      + +.+.++  .|++||+.+++......+.......+|+|||+.|++.++.  .  |+++|+.+++...    +.......
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----lt~~g~~~  338 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----LTFQGNYN  338 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----eecCCCCc
Confidence            4 556655  6999999998876655555556678999999999988842  3  7777776654322    22233445


Q ss_pred             EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI  318 (768)
                      ..++|+|||++|+.+....    +.                ..+.+++..++....+....     ....|.|++||+.|
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~----~~----------------~~I~v~d~~~g~~~~Lt~~~-----~~~~p~~spdG~~i  393 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSG----GQ----------------YRIAVMDLSTGSVRTLTPGS-----LDESPSFAPNGSMV  393 (433)
T ss_pred             cCEEECCCCCEEEEEECCC----Cc----------------eeEEEEECCCCCeEECCCCC-----CCCCceECCCCCEE
Confidence            5789999999988765311    00                02333443332222111110     11257999999999


Q ss_pred             EEEecCCCCCcceEEeccCCCceeeee
Q 004203          319 SLQHTEHDSGATRTQQSLRSSSSVRLL  345 (768)
Q Consensus       319 v~~~~d~~~Gs~~~~~~~~ss~~~rl~  345 (768)
                      ++..++.. .+.++..+.++....+++
T Consensus       394 ~~~s~~~g-~~~L~~~~~~g~~~~~l~  419 (433)
T PRK04922        394 LYATREGG-RGVLAAVSTDGRVRQRLV  419 (433)
T ss_pred             EEEEecCC-ceEEEEEECCCCceEEcc
Confidence            99866532 345666666665555443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.48  E-value=3.3e-13  Score=153.10  Aligned_cols=171  Identities=16%  Similarity=0.241  Sum_probs=145.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      .++.+++.++.|+.|.+|.....    .|++|+..|.++....++. +++||+|.++++|-.  +++...+++|+..|+.
T Consensus        69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA  145 (745)
T KOG0301|consen   69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA  145 (745)
T ss_pred             ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence            46778999999999999998765    6899999999999888887 999999999999986  5667779999999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeec
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      +..-| +. .+++|+.|++|++|.-  ++.++++ +|.+.|..+++-+++.+|-++.|+.|++|++ +++..   ....+
T Consensus       146 v~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l---~~~~g  217 (745)
T KOG0301|consen  146 VASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVL---LEMHG  217 (745)
T ss_pred             eeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCcee---eeeec
Confidence            99988 44 8999999999999986  6677775 5999999999999988777777778999999 44443   36889


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203          234 TRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS~svwdl~  260 (768)
                      |..-|+++....++..+++++++..++
T Consensus       218 htn~vYsis~~~~~~~Ivs~gEDrtlr  244 (745)
T KOG0301|consen  218 HTNFVYSISMALSDGLIVSTGEDRTLR  244 (745)
T ss_pred             cceEEEEEEecCCCCeEEEecCCceEE
Confidence            999999999777777788888744444

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.48  E-value=6.6e-13  Score=145.91  Aligned_cols=173  Identities=13%  Similarity=0.138  Sum_probs=141.7

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-------CC--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE--EEEE
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC-------PL--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL  145 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~-------~L--~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l  145 (768)
                      .+...+.+++|+. +-|++||+...       +|  ......|.++...|||+.|++|+.-.++.|||+.....  ...+
T Consensus       427 IS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikael  505 (705)
T KOG0639|consen  427 ISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL  505 (705)
T ss_pred             ecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhc
Confidence            4556677777754 57999999743       12  23455699999999999999999999999999976542  2344


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCc
Q 004203          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMRE  223 (768)
Q Consensus       146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~  223 (768)
                      ....-..+.++.+| |.++++++..||.|.|||+.+...++.+ +|.+.+.|+..++||..|-+|+ |+.|+.||++.+.
T Consensus       506 tssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr  584 (705)
T KOG0639|consen  506 TSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR  584 (705)
T ss_pred             CCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence            44445678899999 9999999999999999999999988887 4999999999999999999999 6779999999987


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...    .......|.++-.+|++.+++++..
T Consensus       585 qlq----qhdF~SQIfSLg~cP~~dWlavGMe  612 (705)
T KOG0639|consen  585 QLQ----QHDFSSQIFSLGYCPTGDWLAVGME  612 (705)
T ss_pred             hhh----hhhhhhhheecccCCCccceeeecc
Confidence            644    2234678999999999999988765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=1.7e-12  Score=151.16  Aligned_cols=171  Identities=19%  Similarity=0.283  Sum_probs=140.7

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC--
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--  148 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--  148 (768)
                      .+...++..++.|++|-.|++.+....    .+.+|+.+|.++.|+|.+++||+.+.||+|++||++++.+..++.+-  
T Consensus       102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k  181 (933)
T KOG1274|consen  102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK  181 (933)
T ss_pred             EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc
Confidence            334557889999999999999998865    58899999999999999999999999999999999999877666532  


Q ss_pred             ------CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCeEEEEEcCCCCEEEEEE-CCeEEEEE
Q 004203          149 ------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVAS-GHKLYIWR  218 (768)
Q Consensus       149 ------~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---h~~~V~svafSPDG~~LatgS-dd~I~IWD  218 (768)
                            ...+..++|+| ++..++....|++|++|+..+++.+..+.   +...+..+.|+|+|++||+++ ++.|.|||
T Consensus       182 ~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  182 DNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN  260 (933)
T ss_pred             cccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence                  23456689999 66667777788999999999998877753   444599999999999999999 56699999


Q ss_pred             cCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .++.+.       ......|.+++|.|++..+-..
T Consensus       261 v~t~~~-------~~~~~~Vc~~aw~p~~n~it~~  288 (933)
T KOG1274|consen  261 VDTHER-------HEFKRAVCCEAWKPNANAITLI  288 (933)
T ss_pred             cccchh-------ccccceeEEEecCCCCCeeEEE
Confidence            988321       2346789999999998855443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=6e-13  Score=136.07  Aligned_cols=182  Identities=16%  Similarity=0.190  Sum_probs=144.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCC---eEEEEEec
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG---SCLKVLHG  147 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg---~~l~~l~g  147 (768)
                      ..+..|++++.|++|.+|..+.++      ...|...|++++|.|  -|-.|++++.||+|.|.++++.   ...+....
T Consensus        68 k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a  147 (299)
T KOG1332|consen   68 KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA  147 (299)
T ss_pred             ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence            357889999999999999998873      568999999999999  4568899999999999998764   23456678


Q ss_pred             CCCCcEEEEEccCC--C-----------CEEEEEeCCCeEEEEECCCCcEE--EEe-cCCCCeEEEEEcCCC----CEEE
Q 004203          148 HRRTPWVVRFHPLN--P-----------TIIASGSLDHEVRLWNASTAECI--GSR-DFYRPIASIAFHASG----ELLA  207 (768)
Q Consensus       148 H~g~V~sVafSP~d--g-----------~lLaSgS~DgtVrLWDl~sg~~i--~~l-~h~~~V~svafSPDG----~~La  207 (768)
                      |.-.|++++|.|-.  +           +.|++|+.|+.|+||+..+++-+  .++ +|.+-|..++|.|.-    ..|+
T Consensus       148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence            99999999999921  2           56999999999999999986432  223 588999999999964    3789


Q ss_pred             EEEC-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203          208 VASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (768)
Q Consensus       208 tgSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~  260 (768)
                      +++. +++.||..+......+...+......+..+.||..|..|+.++..+.+.
T Consensus       228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt  281 (299)
T KOG1332|consen  228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT  281 (299)
T ss_pred             EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence            9984 5599998875444443444555678899999999999888777655443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.47  E-value=8.8e-12  Score=129.96  Aligned_cols=186  Identities=17%  Similarity=0.166  Sum_probs=131.4

Q ss_pred             EecCCCEEE-EEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCC-eEEEEeCCCCeEEEEEecCCCC
Q 004203           77 GRDARRGLA-SWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        77 ~~d~g~~Lv-Sgs~DgsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      ...++..++ +...++.|++||+.+.+..   .+...+.+++|+|||+++++++.++ .+++||.++++....+.. ...
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~  158 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQR  158 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCC
Confidence            334455554 4556899999999875321   2234578899999999999988875 577889998887665543 334


Q ss_pred             cEEEEEccCCCCEEE-EEeCCCeEEEEECCCCcEEEEecCC------C--CeEEEEEcCCCCEEEEEE--CCeEEEEEcC
Q 004203          152 PWVVRFHPLNPTIIA-SGSLDHEVRLWNASTAECIGSRDFY------R--PIASIAFHASGELLAVAS--GHKLYIWRYN  220 (768)
Q Consensus       152 V~sVafSP~dg~lLa-SgS~DgtVrLWDl~sg~~i~~l~h~------~--~V~svafSPDG~~LatgS--dd~I~IWDl~  220 (768)
                      +..+.|+| ++++++ ++..++.|++||+++++.+..+...      .  ....++|+|++++++++.  ++.+.+||++
T Consensus       159 ~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       159 PRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             ccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            67789999 777664 5556999999999999876654321      1  234688999999866543  4569999998


Q ss_pred             CCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeE
Q 004203          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTL  268 (768)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~~~~~L  268 (768)
                      +.+...    ...+...+.++.|+|+|++|+++..      +||++.++....+
T Consensus       238 ~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       238 TYEVLD----YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             CCcEEE----EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            765432    2234457899999999998877642      6676655444444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.46  E-value=1.2e-12  Score=143.27  Aligned_cols=178  Identities=19%  Similarity=0.238  Sum_probs=150.2

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCCC--------------------C--CCCCCCeEEEEECCCCCEEEEEeCCC
Q 004203           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP--------------------L--SPPPRSTIAAAFSPDGKTLASTHGDH  129 (768)
Q Consensus        72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~--------------------L--~gH~~~VtslafSPDG~~LaSgS~Dg  129 (768)
                      .+.++..++..++++++.+++|.-|+..++.                    .  +.|...|.+++.|+||++|++|+.|.
T Consensus       145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~  224 (479)
T KOG0299|consen  145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR  224 (479)
T ss_pred             ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence            4445666788999999999999999987551                    1  26888899999999999999999999


Q ss_pred             eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEE
Q 004203          130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAV  208 (768)
Q Consensus       130 tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~Lat  208 (768)
                      .|.|||.++.+.++.+++|.+.|.+++|-. +...+++++.|++|++|+++....+.+ ++|++.|..+.-..-++.+.+
T Consensus       225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV  303 (479)
T KOG0299|consen  225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV  303 (479)
T ss_pred             eEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEe
Confidence            999999999999999999999999999988 888999999999999999998777766 689999999988888887777


Q ss_pred             EE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          209 AS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       209 gS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |+ |.++++|++.....    ..+.++...+.+++|-.+.. +++++.
T Consensus       304 GgrDrT~rlwKi~eesq----lifrg~~~sidcv~~In~~H-fvsGSd  346 (479)
T KOG0299|consen  304 GGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFINDEH-FVSGSD  346 (479)
T ss_pred             ccccceeEEEeccccce----eeeeCCCCCeeeEEEecccc-eeeccC
Confidence            76 55599999944332    34667788999999987665 555554

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.46  E-value=1.3e-12  Score=137.15  Aligned_cols=189  Identities=18%  Similarity=0.275  Sum_probs=151.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccC
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL  160 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~  160 (768)
                      ..+|++.-.+++++.--  ...+.||+..|..++-......+.+++.|.+.+||.+++|+|+..+.||.+.|+++.|++ 
T Consensus       124 tsrivssFk~~t~~~~l--vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-  200 (481)
T KOG0300|consen  124 TSRIVSSFKDGTVKFRL--VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-  200 (481)
T ss_pred             cchheeeecCCceeEee--hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-
Confidence            34556665666543211  236889999999999988778999999999999999999999999999999999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEEC------CC--------Cc----------------------EE-----EEecCCCCeEEEEE
Q 004203          161 NPTIIASGSLDHEVRLWNA------ST--------AE----------------------CI-----GSRDFYRPIASIAF  199 (768)
Q Consensus       161 dg~lLaSgS~DgtVrLWDl------~s--------g~----------------------~i-----~~l~h~~~V~svaf  199 (768)
                      .+.++++++.|++.+||..      .+        ++                      .+     ...+|...|.+..|
T Consensus       201 s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW  280 (481)
T KOG0300|consen  201 SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW  280 (481)
T ss_pred             ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh
Confidence            9999999999999999962      11        00                      01     11357788899999


Q ss_pred             cCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCC
Q 004203          200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG  273 (768)
Q Consensus       200 SPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G  273 (768)
                      -..|+.+++++-|+ ..+||+.+++...   .+.+|....+.++-+|..+.+++++.     .||++  +.+.....+.|
T Consensus       281 L~gg~Q~vTaSWDRTAnlwDVEtge~v~---~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQG  355 (481)
T KOG0300|consen  281 LAGGQQMVTASWDRTANLWDVETGEVVN---ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQG  355 (481)
T ss_pred             hcCcceeeeeeccccceeeeeccCceec---cccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecc
Confidence            99999999999655 9999999998766   68899999999999999997776665     77776  35556666677


Q ss_pred             cccC
Q 004203          274 YWRY  277 (768)
Q Consensus       274 ~~~~  277 (768)
                      |...
T Consensus       356 Htdt  359 (481)
T KOG0300|consen  356 HTDT  359 (481)
T ss_pred             cccc
Confidence            7553

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.45  E-value=2.1e-12  Score=145.59  Aligned_cols=189  Identities=19%  Similarity=0.241  Sum_probs=142.9

Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 004203           68 GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ  137 (768)
Q Consensus        68 ~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~  137 (768)
                      +.|...+.........|+.+.+||.|.++|....          ....|...|.++.|-|-...|+++++|.++++||++
T Consensus        51 pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk  130 (720)
T KOG0321|consen   51 PPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK  130 (720)
T ss_pred             CCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec
Confidence            3344555556667788889999999999998643          234799999999999977789999999999999999


Q ss_pred             CCeEEEE--EecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEE-
Q 004203          138 TGSCLKV--LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---------------------------IGS-  187 (768)
Q Consensus       138 tg~~l~~--l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---------------------------i~~-  187 (768)
                      +++++..  +.||.+.|.+++|+|.+...|++|++||.|.|||++-...                           +.. 
T Consensus       131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~  210 (720)
T KOG0321|consen  131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW  210 (720)
T ss_pred             cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence            9988766  8999999999999999999999999999999999974320                           000 


Q ss_pred             ecCCCCeEE---EEEcCCCCEEEEEEC--CeEEEEEcCCCccccC--C---eEeecC---CCCeEEEEEccCCCeEEEEE
Q 004203          188 RDFYRPIAS---IAFHASGELLAVASG--HKLYIWRYNMREETSS--P---RIVLRT---RRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       188 l~h~~~V~s---vafSPDG~~LatgSd--d~I~IWDl~t~~~~~~--~---~~l~~h---~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ..+...|.+   +-+..|...||+++.  +.|+|||+++......  +   ..+..+   ...+.++.....|.++++++
T Consensus       211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            112333444   556678888888874  4599999998654221  1   111122   34577888888899999988


Q ss_pred             ee
Q 004203          255 EV  256 (768)
Q Consensus       255 sv  256 (768)
                      .+
T Consensus       291 tD  292 (720)
T KOG0321|consen  291 TD  292 (720)
T ss_pred             cC
Confidence            73

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=3.7e-12  Score=134.08  Aligned_cols=247  Identities=15%  Similarity=0.129  Sum_probs=169.8

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      +.-|..|+.|..+|.|-+||..+.    .+.+|..+|++++||+||+.|+++|.|..|++||+..|.+++.+. ...+|+
T Consensus        32 s~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~  110 (405)
T KOG1273|consen   32 SRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVW  110 (405)
T ss_pred             ccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccc
Confidence            356889999999999999999876    588999999999999999999999999999999999999998887 467899


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecC----CCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccC
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDF----YRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSS  227 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h----~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~  227 (768)
                      .+.|+|.+.+.++..-.+..-.+-++..++.... ...    .....+..|++.|+++++|.. |++.++|..+.+....
T Consensus       111 ~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas  190 (405)
T KOG1273|consen  111 GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS  190 (405)
T ss_pred             eeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee
Confidence            9999997777777666666666667665332211 111    112233468999999999985 6699999999876541


Q ss_pred             CeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce
Q 004203          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil  307 (768)
                       +.+. ....|..+.|+-.|+.+++-+.+.-++.-+....+..  |...-+.+...+.+           .   ..--.|
T Consensus       191 -~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~--~r~~e~e~~~K~qD-----------v---VNk~~W  252 (405)
T KOG1273|consen  191 -FRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE--GRDGEVEPEHKLQD-----------V---VNKLQW  252 (405)
T ss_pred             -eeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc--CccCCcChhHHHHH-----------H---Hhhhhh
Confidence             1221 2468999999999998887766444432111100000  00000000011100           0   011234


Q ss_pred             -EEEEecCCCEEEEEecCCCCCcceEEeccCCCceeeeec
Q 004203          308 -RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLT  346 (768)
Q Consensus       308 -~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~~  346 (768)
                       .++||.||.+|.+..   ..--.++.+..+.++-+++..
T Consensus       253 k~ccfs~dgeYv~a~s---~~aHaLYIWE~~~GsLVKILh  289 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGS---ARAHALYIWEKSIGSLVKILH  289 (405)
T ss_pred             hheeecCCccEEEecc---ccceeEEEEecCCcceeeeec
Confidence             689999999999864   223457777777777665544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=3.8e-12  Score=133.78  Aligned_cols=194  Identities=11%  Similarity=0.159  Sum_probs=146.9

Q ss_pred             ceeecCCcceeecCCCC----------eEEEEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCE
Q 004203           55 SKRLLGETARKCSGSFS----------QIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKT  121 (768)
Q Consensus        55 ~k~~wd~s~~~~s~s~~----------~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~  121 (768)
                      .-..||..+..++....          +++.-.-.+...++++.-|+.|+.+|+.++   ++..|.+.|.|+.+++-...
T Consensus        29 LvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~  108 (323)
T KOG1036|consen   29 LVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGC  108 (323)
T ss_pred             EEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCe
Confidence            34458888877764432          222223335678999999999999999987   57789999999999998889


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---------------EE
Q 004203          122 LASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---------------IG  186 (768)
Q Consensus       122 LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---------------i~  186 (768)
                      +++||+|++|++||.+.......+. ....|.++..   .++.|+.|..|..|.+||+++...               +.
T Consensus       109 vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~  184 (323)
T KOG1036|consen  109 VISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVA  184 (323)
T ss_pred             EEEcccCccEEEEeccccccccccc-cCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEE
Confidence            9999999999999998755555554 3447888776   568888889999999999976321               00


Q ss_pred             E---------------------------------ec-CC---------CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC
Q 004203          187 S---------------------------------RD-FY---------RPIASIAFHASGELLAVASGHK-LYIWRYNMR  222 (768)
Q Consensus       187 ~---------------------------------l~-h~---------~~V~svafSPDG~~LatgSdd~-I~IWDl~t~  222 (768)
                      .                                 +. |.         .+|++++|+|--..|++|+.|+ |.+||+.+.
T Consensus       185 ~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  185 LVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             EecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence            0                                 00 11         2588999999988999998555 999999988


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +...   .+..-...|.+++|+-||..|+++.+
T Consensus       265 Krl~---q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  265 KRLK---QLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             hhhh---hccCCCCceEEEEeccCCCeEEEEec
Confidence            7644   34444678999999999998877765

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.44  E-value=1.5e-12  Score=143.13  Aligned_cols=179  Identities=17%  Similarity=0.165  Sum_probs=146.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC-CCCcEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWV  154 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-~g~V~s  154 (768)
                      ...++++++..+.|++||++..    .+++|+..|+++.++-...+||+++..|.|.|..+.++.....|... +..|+-
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl  169 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL  169 (673)
T ss_pred             cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence            4578999999999999999854    68999999999999999999999999999999999999888888654 456778


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCCccccCCeE
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--~h~~~V~svafSPDG~-~LatgS-dd~I~IWDl~t~~~~~~~~~  230 (768)
                      +.|+|....+|.+++.+|.|.|||+....++..+  .|..+...++|+|.+. +|++.+ |.+|.+||.+......    
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----  245 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----  245 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----
Confidence            9999955567777999999999999887776664  4888999999999876 455555 5569999998766533    


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg  262 (768)
                      ...-..+...|+|+++|.+|+++.+     ..|++..
T Consensus       246 ~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  246 RLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             eeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence            3334568999999999998888765     4566643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.44  E-value=2.2e-12  Score=139.42  Aligned_cols=173  Identities=23%  Similarity=0.333  Sum_probs=139.1

Q ss_pred             EEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC--------C---
Q 004203           83 GLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--------T---  138 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~-------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~--------t---  138 (768)
                      .+++++-|..|++|.....             .|..|...|+++.|+|+|.+|++|+++|.|.+|-..        +   
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~  107 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD  107 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence            8999999999999998743             367899999999999999999999999999999654        3   


Q ss_pred             -----CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECC
Q 004203          139 -----GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH  212 (768)
Q Consensus       139 -----g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd  212 (768)
                           ....+.+.+|...|+.++|+| ++.++++++.|.++++||+..|+....+ +|...+..++|.|-++++++-+.+
T Consensus       108 ~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~d  186 (434)
T KOG1009|consen  108 LNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSD  186 (434)
T ss_pred             hCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccC
Confidence                 234577889999999999999 9999999999999999999999998886 488899999999999999988755


Q ss_pred             e-EEEEEcCCCccccCCe----------------EeecC----CCCeEEEEEccCCCeEEEEEee
Q 004203          213 K-LYIWRYNMREETSSPR----------------IVLRT----RRSLRAVHFHPHAAPLLLTAEV  256 (768)
Q Consensus       213 ~-I~IWDl~t~~~~~~~~----------------~l~~h----~~~V~sVaFSPDG~~LlaS~sv  256 (768)
                      . .+.+++..........                ...-|    ..-.+.++|+|||..+++-++.
T Consensus       187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~  251 (434)
T KOG1009|consen  187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL  251 (434)
T ss_pred             cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence            4 5555554433211000                00111    1345778999999988876653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.43  E-value=7.3e-12  Score=144.61  Aligned_cols=207  Identities=15%  Similarity=0.155  Sum_probs=169.8

Q ss_pred             EEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE---ecCC
Q 004203           83 GLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL---HGHR  149 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~~----------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l---~gH~  149 (768)
                      .+.....+...+.|+....+          ++.-...+++++.++-|++.+.|...|+|-+||+++|-....|   ..|.
T Consensus       414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~  493 (910)
T KOG1539|consen  414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK  493 (910)
T ss_pred             eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc
Confidence            34444556678888877543          3344478999999999999999999999999999999888888   5899


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSP  228 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~  228 (768)
                      ++|+.++..- -++.+++++.||.+++||...+..+..+.....+..+..+.....++.+.++- |+++|..+.+..+  
T Consensus       494 ~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR--  570 (910)
T KOG1539|consen  494 GEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR--  570 (910)
T ss_pred             CceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH--
Confidence            9999999987 78899999999999999999999888888889999999999999999998776 9999999988755  


Q ss_pred             eEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCC
Q 004203          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLIT  303 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~s  303 (768)
                       .+.+|.+.|++++|||||++|++++.     .||+.++                            ..+...    ...
T Consensus       571 -~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~----------------------------~lID~~----~vd  617 (910)
T KOG1539|consen  571 -EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG----------------------------TLIDGL----LVD  617 (910)
T ss_pred             -HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc----------------------------ceeeeE----ecC
Confidence             67789999999999999999998875     4444322                            111111    123


Q ss_pred             CCceEEEEecCCCEEEEEecCC
Q 004203          304 PPFLRPSFVRDDERISLQHTEH  325 (768)
Q Consensus       304 lpil~psFSpDG~rIv~~~~d~  325 (768)
                      .|+...+|||.|..++..|-+.
T Consensus       618 ~~~~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  618 SPCTSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             CcceeeEECCCCCEEEEEEecC
Confidence            4677899999999999987754

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.43  E-value=1.4e-12  Score=140.79  Aligned_cols=145  Identities=23%  Similarity=0.370  Sum_probs=120.6

Q ss_pred             CCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCC---------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203          107 PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTG---------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (768)
Q Consensus       107 ~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg---------~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL  176 (768)
                      ..+|..+.|.++.. .|++|+.|..|++|-++.+         +....+..|.+.|+++.|+| +|++++||+.+|.|.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence            45799999999666 9999999999999987543         23456778999999999999 9999999999999999


Q ss_pred             EECC--------C-----Cc---EEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCe
Q 004203          177 WNAS--------T-----AE---CIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       177 WDl~--------s-----g~---~i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      |...        +     .+   ..+. ..|...|..++|+||+.++++++ ++.+++||+..+....   ...+|...|
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---~~~dh~~yv  168 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---ILDDHEHYV  168 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---ecccccccc
Confidence            9776        2     11   1111 24888999999999999999999 5569999999998654   677899999


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004203          239 RAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~s  255 (768)
                      ..++|.|-++++++-+.
T Consensus       169 qgvawDpl~qyv~s~s~  185 (434)
T KOG1009|consen  169 QGVAWDPLNQYVASKSS  185 (434)
T ss_pred             ceeecchhhhhhhhhcc
Confidence            99999999998876554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=3.6e-11  Score=136.04  Aligned_cols=221  Identities=17%  Similarity=0.125  Sum_probs=138.6

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (768)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL  165 (768)
                      .|.+||....   ++..+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+....|+| |++.|
T Consensus       177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~~l  254 (427)
T PRK02889        177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGRTL  254 (427)
T ss_pred             EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence            5666676433   356788889999999999999887753   469999999987543 333344566789999 77766


Q ss_pred             E-EEeCCCe--EEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEc--CCCccccCCeEeecCCCCe
Q 004203          166 A-SGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRY--NMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       166 a-SgS~Dgt--VrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d~I~IWDl--~t~~~~~~~~~l~~h~~~V  238 (768)
                      + +.+.++.  |+++|+.+++......+........|+|||+.|++.++  +...+|.+  .++...    .+.......
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~g~~~  330 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFTGSYN  330 (427)
T ss_pred             EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE----EEecCCCCc
Confidence            5 5677776  55556666654444444555667889999999988775  33555544  443321    222223334


Q ss_pred             EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI  318 (768)
                      ....|||||++|+.++....    .                ..+.+++...+....+... .    ....|.|+|||+.|
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g----~----------------~~I~v~d~~~g~~~~lt~~-~----~~~~p~~spdg~~l  385 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGG----A----------------FKLYVQDLATGQVTALTDT-T----RDESPSFAPNGRYI  385 (427)
T ss_pred             CceEECCCCCEEEEEEccCC----c----------------EEEEEEECCCCCeEEccCC-C----CccCceECCCCCEE
Confidence            56889999999887664211    0                0234444333322222111 0    11368999999999


Q ss_pred             EEEecCCCCCcceEEeccCCCceeee
Q 004203          319 SLQHTEHDSGATRTQQSLRSSSSVRL  344 (768)
Q Consensus       319 v~~~~d~~~Gs~~~~~~~~ss~~~rl  344 (768)
                      ++..++... +.++..+.++....++
T Consensus       386 ~~~~~~~g~-~~l~~~~~~g~~~~~l  410 (427)
T PRK02889        386 LYATQQGGR-SVLAAVSSDGRIKQRL  410 (427)
T ss_pred             EEEEecCCC-EEEEEEECCCCceEEe
Confidence            998765543 4556666655544434

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=3.8e-12  Score=134.06  Aligned_cols=199  Identities=17%  Similarity=0.208  Sum_probs=134.3

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-----~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL  176 (768)
                      .|++|.+.|++++|+.||++|++++.|++|++||+++..     +++.-- ..+..+.+.|+|+...++++.-+..++++
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            578999999999999999999999999999999997742     111111 12346778999966667777777779999


Q ss_pred             EECCCCcE---EEE--------e--cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEE
Q 004203          177 WNASTAEC---IGS--------R--DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVH  242 (768)
Q Consensus       177 WDl~sg~~---i~~--------l--~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVa  242 (768)
                      |.+...+.   ...        +  .|.-.+..+-...++++|++++.|+ |.+||++ ++...   .+......-+..+
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~---~idtnq~~n~~aa  235 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ---SIDTNQSSNYDAA  235 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee---eecccccccccee
Confidence            98764322   100        1  2445666777788889999999665 9999998 44333   3444455667889


Q ss_pred             EccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEe
Q 004203          243 FHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (768)
Q Consensus       243 FSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~  322 (768)
                      .||+|+++++++-.-|+..|+.   +.+-+|.++-..++               -...+.....++.+||++..+++...
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~---~f~kdG~fqev~rv---------------f~LkGH~saV~~~aFsn~S~r~vtvS  297 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEP---IFTKDGTFQEVKRV---------------FSLKGHQSAVLAAAFSNSSTRAVTVS  297 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEE---EeccCcchhhhhhh---------------heeccchhheeeeeeCCCcceeEEEe
Confidence            9999998877765334432211   11223332211111               12334455677899999999999753


Q ss_pred             c
Q 004203          323 T  323 (768)
Q Consensus       323 ~  323 (768)
                      -
T Consensus       298 k  298 (420)
T KOG2096|consen  298 K  298 (420)
T ss_pred             c
Confidence            3

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.42  E-value=4.5e-12  Score=146.28  Aligned_cols=170  Identities=14%  Similarity=0.130  Sum_probs=146.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L---~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      =|...+-|...|.|.+++++.+    .+   ..|++.|++++...-++.+++++.+|.++.||+++...+..++ -+..+
T Consensus       459 CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~  537 (910)
T KOG1539|consen  459 CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSI  537 (910)
T ss_pred             cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCc
Confidence            3556777888999999999977    34   5899999999999999999999999999999999888777775 34567


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeE
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~  230 (768)
                      ..+..+. ...+++.+..|-.|+++|+.+.+.++.+ +|...|++++|+|||++|++++- ++|++||+.++..+.    
T Consensus       538 ~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID----  612 (910)
T KOG1539|consen  538 TGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID----  612 (910)
T ss_pred             ceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee----
Confidence            7788888 8889999999999999999999988886 49999999999999999999994 569999999998654    


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEe
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ......+..++.|||+|.+|+++-.
T Consensus       613 ~~~vd~~~~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  613 GLLVDSPCTSLSFSPNGDFLATVHV  637 (910)
T ss_pred             eEecCCcceeeEECCCCCEEEEEEe
Confidence            3445788999999999997776654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.41  E-value=2.9e-12  Score=145.28  Aligned_cols=191  Identities=17%  Similarity=0.227  Sum_probs=159.3

Q ss_pred             ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC---CCCEEEEEeCCCeEEEEeCCC
Q 004203           66 CSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP---DGKTLASTHGDHTVKIIDCQT  138 (768)
Q Consensus        66 ~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP---DG~~LaSgS~DgtVrVWDl~t  138 (768)
                      ++..++....+.+.+++.|++|...|.++++++..-    .+..|...|.|+.||.   ..++||+++.|..|.|||+..
T Consensus       456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            556677888888899999999999999999999743    6779999999999997   457899999999999999853


Q ss_pred             -CeEEEEEecCCCC-------------------------------------------------cEEEEEccCCCCEEEEE
Q 004203          139 -GSCLKVLHGHRRT-------------------------------------------------PWVVRFHPLNPTIIASG  168 (768)
Q Consensus       139 -g~~l~~l~gH~g~-------------------------------------------------V~sVafSP~dg~lLaSg  168 (768)
                       ...+.++.+|...                                                 ++.++..| ..++++++
T Consensus       536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~  614 (1080)
T KOG1408|consen  536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTV  614 (1080)
T ss_pred             ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEE
Confidence             2333444444444                                                 44455555 56889999


Q ss_pred             eCCCeEEEEECCCCcEEEEec----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEE
Q 004203          169 SLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHF  243 (768)
Q Consensus       169 S~DgtVrLWDl~sg~~i~~l~----h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaF  243 (768)
                      +.|+.|+|||+++|+..+.|+    |++..-.+..+|.|-+|++.+.++ +.++|+-+++...   .+.+|...|+.+.|
T Consensus       615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA---~m~GHsE~VTG~kF  691 (1080)
T KOG1408|consen  615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA---QMTGHSEAVTGVKF  691 (1080)
T ss_pred             ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh---hhcCcchheeeeee
Confidence            999999999999999999875    667788899999999999998666 9999999999866   78899999999999


Q ss_pred             ccCCCeEEEEEe-----eCCcC
Q 004203          244 HPHAAPLLLTAE-----VNDLD  260 (768)
Q Consensus       244 SPDG~~LlaS~s-----vwdl~  260 (768)
                      .+|-+.|+..++     +|.+.
T Consensus       692 ~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  692 LNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             cccchhheeecCCceEEEEECc
Confidence            999999988766     66654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.41  E-value=4.7e-12  Score=138.13  Aligned_cols=175  Identities=18%  Similarity=0.207  Sum_probs=137.7

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEE-EEEecCC
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHR  149 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l-~~l~gH~  149 (768)
                      +-+.....|+|++.|.+|++||+.++    .+..|.+.|.++.|+| ...+|++|+.|++|.+.|++..... ..++ -.
T Consensus       251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~  329 (463)
T KOG0270|consen  251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FD  329 (463)
T ss_pred             hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-ec
Confidence            34456788999999999999999988    4667999999999999 7789999999999999999843222 2233 34


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-cCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccc
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREET  225 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-~~i~~l-~h~~~V~svafSPDG~-~LatgSdd~-I~IWDl~t~~~~  225 (768)
                      +.|-.++|.|.....++++..||+|+-+|+|+. +++.++ .|.+.|.++++++.-. +|++++.++ +++|++......
T Consensus       330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~  409 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK  409 (463)
T ss_pred             cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence            668999999977888999999999999999975 777775 5999999999998766 566766555 999998765432


Q ss_pred             cCCeEeecC---CCCeEEEEEccCCCeEEEEEe
Q 004203          226 SSPRIVLRT---RRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       226 ~~~~~l~~h---~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .    ...|   -+...+.++.|+-.++++.++
T Consensus       410 ~----v~~~~~~~~rl~c~~~~~~~a~~la~GG  438 (463)
T KOG0270|consen  410 S----VKEHSFKLGRLHCFALDPDVAFTLAFGG  438 (463)
T ss_pred             c----cccccccccceeecccCCCcceEEEecC
Confidence            1    2222   133778889998887776654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.41  E-value=3.3e-12  Score=135.09  Aligned_cols=175  Identities=22%  Similarity=0.331  Sum_probs=134.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEE---ecCCCC
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVL---HGHRRT  151 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg~~l~~l---~gH~g~  151 (768)
                      ..-.++.++.-|.|++.|....    .+.+|...|+.+.|.|+ .++++++|.|..||+||+++..++..|   .||.+.
T Consensus       104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde  183 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE  183 (385)
T ss_pred             CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence            3556778888999999999866    47799999999999994 579999999999999999999999887   579999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE-------------------------Ee----cCCCC---------
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG-------------------------SR----DFYRP---------  193 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~-------------------------~l----~h~~~---------  193 (768)
                      |.++.|++ ++++|+|++.|.+|++|++...+...                         .+    -|..+         
T Consensus       184 VLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd  262 (385)
T KOG1034|consen  184 VLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD  262 (385)
T ss_pred             EEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh
Confidence            99999999 99999999999999999997321100                         00    00000         


Q ss_pred             -----------------------------------------------eEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccc
Q 004203          194 -----------------------------------------------IASIAFHASGELLAVASG-HKLYIWRYNMREET  225 (768)
Q Consensus       194 -----------------------------------------------V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~  225 (768)
                                                                     ....+|+|-++.||.|.. ++|++||++..+..
T Consensus       263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence                                                           112355666778888874 56999999987753


Q ss_pred             cCCeEe-ecCCCCeEEEEEccCCCeEEEEEe
Q 004203          226 SSPRIV-LRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       226 ~~~~~l-~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...... ......|+..+|+.||..|+..+.
T Consensus       343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd  373 (385)
T KOG1034|consen  343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCD  373 (385)
T ss_pred             cCceEEeccccceeeeeeecccCcEEEEEeC
Confidence            212111 123567999999999998888776

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.40  E-value=4.6e-12  Score=136.45  Aligned_cols=173  Identities=20%  Similarity=0.247  Sum_probs=143.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (768)
                      +...|+||++|.+|.+|++-..           .|.+|.+.|--++|+| -.+.|++++.|.+|.+||+.+|+.+..+. 
T Consensus        93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-  171 (472)
T KOG0303|consen   93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-  171 (472)
T ss_pred             CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-
Confidence            5678999999999999998643           3779999999999999 56789999999999999999999988887 


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCC-CeEEEEEcCCCCEEEEEEC---C-eEEEEEcCC
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYR-PIASIAFHASGELLAVASG---H-KLYIWRYNM  221 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~-~V~svafSPDG~~LatgSd---d-~I~IWDl~t  221 (768)
                      |..-|+++.|+- ||.++++++.|+.|||||.++++.+..- .|.+ .-..+.|-.+|.++.+|-.   + .+-+||..+
T Consensus       172 hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  172 HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence            999999999999 9999999999999999999999988774 5655 4556779999996555542   2 399999877


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      -+... ..........|.---|.+|.+.+...+.
T Consensus       251 l~eP~-~~~elDtSnGvl~PFyD~dt~ivYl~GK  283 (472)
T KOG0303|consen  251 LEEPI-ALQELDTSNGVLLPFYDPDTSIVYLCGK  283 (472)
T ss_pred             ccCcc-eeEEeccCCceEEeeecCCCCEEEEEec
Confidence            66532 2334456778888889999886666554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.40  E-value=4.6e-12  Score=138.51  Aligned_cols=182  Identities=19%  Similarity=0.197  Sum_probs=143.0

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEe--
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLH--  146 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~--------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~--  146 (768)
                      ......+++|...|.|-+||+.+.        .+..|..+|.++.|+| +-..+++.|.||+|++-|++++.....+.  
T Consensus       197 t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~  276 (498)
T KOG4328|consen  197 TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD  276 (498)
T ss_pred             cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC
Confidence            345678899999999999999532        3678999999999999 77899999999999999998875433333  


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe-cCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCC
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMR  222 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l-~h~~~V~svafSPDG~-~LatgS-dd~I~IWDl~t~  222 (768)
                      .....+..+.|+- +...++.+..=|...+||++++.. ...+ -|...|..++++|... +|++++ |++.+|||++.-
T Consensus       277 ~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l  355 (498)
T KOG4328|consen  277 TDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQL  355 (498)
T ss_pred             ccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhh
Confidence            2444566788888 666677777767999999998655 3333 3777999999999776 677777 566999999876


Q ss_pred             ccccC-CeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203          223 EETSS-PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (768)
Q Consensus       223 ~~~~~-~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~  260 (768)
                      ..... ......|...|.++.|||++-.|++++....++
T Consensus       356 ~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR  394 (498)
T KOG4328|consen  356 RGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR  394 (498)
T ss_pred             cCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence            55442 345667999999999999998899888766665

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.39  E-value=2.3e-11  Score=127.65  Aligned_cols=199  Identities=13%  Similarity=0.076  Sum_probs=146.6

Q ss_pred             ceeecCCcceeecCCC--------------CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECC
Q 004203           55 SKRLLGETARKCSGSF--------------SQIFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSP  117 (768)
Q Consensus        55 ~k~~wd~s~~~~s~s~--------------~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~---L~gH~~~VtslafSP  117 (768)
                      ....||..+..|...-              ..+-+...+++..+++++.|+.+++||+.+++   +..|.++|..+.|-+
T Consensus        44 ~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~  123 (347)
T KOG0647|consen   44 AAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP  123 (347)
T ss_pred             EecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec
Confidence            3556777776665322              23444567788999999999999999999884   568999999999988


Q ss_pred             CCC--EEEEEeCCCeEEEEeCCCCeEEEEEec-------------------------------------C----CCCcEE
Q 004203          118 DGK--TLASTHGDHTVKIIDCQTGSCLKVLHG-------------------------------------H----RRTPWV  154 (768)
Q Consensus       118 DG~--~LaSgS~DgtVrVWDl~tg~~l~~l~g-------------------------------------H----~g~V~s  154 (768)
                      ...  .|++||.|++||.||.+....+.++.-                                     +    .-.+++
T Consensus       124 ~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~  203 (347)
T KOG0647|consen  124 GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRC  203 (347)
T ss_pred             CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeE
Confidence            555  899999999999999987654443321                                     1    123677


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--ec-CC---------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD-FY---------RPIASIAFHASGELLAVAS-GHKLYIWRYNM  221 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~-h~---------~~V~svafSPDG~~LatgS-dd~I~IWDl~t  221 (768)
                      |+..+ +.+..+.|+-.|.+-|..+..+.....  +. |.         ..|++++|+|.-..|++++ ||.+.+||-+.
T Consensus       204 va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  204 VACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             EEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence            77777 666678888888888888877533221  21 22         2578899999877777766 66699999877


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-eC
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-VN  257 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-vw  257 (768)
                      .....   ....|..+|.+..|+.+|.+++.+.+ +|
T Consensus       283 r~kLk---~s~~~~qpItcc~fn~~G~ifaYA~gYDW  316 (347)
T KOG0647|consen  283 RTKLK---TSETHPQPITCCSFNRNGSIFAYALGYDW  316 (347)
T ss_pred             hhhhh---ccCcCCCccceeEecCCCCEEEEEeeccc
Confidence            76433   45678899999999999998777655 44

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.37  E-value=2.1e-10  Score=127.92  Aligned_cols=219  Identities=15%  Similarity=0.117  Sum_probs=143.1

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (768)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL  165 (768)
                      .|.++|....   .+..+...+...+|+|||++|+.++.+   ..|++||+.+++.... ..+.+.+..+.|+| |++.|
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~sp-Dg~~l  248 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSP-DGSKL  248 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECC-CCCEE
Confidence            5777777533   355677789999999999999987654   4899999998865433 34555667789999 77655


Q ss_pred             E-EEeCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEeecCCCCe
Q 004203          166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       166 a-SgS~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      + +.+.++  .|++||+.+++......+........|+|||+.|++.++.    .|+++|+.+++..    .+..+...+
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~  324 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYN  324 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCc
Confidence            5 445444  6999999988766555555555677999999999887742    3888888765432    234445667


Q ss_pred             EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI  318 (768)
                      ..+.|+|||++++.+.....    .                ..+.+++...+....+...     .....|.|+|||+.|
T Consensus       325 ~~~~~spdg~~i~~~~~~~~----~----------------~~i~~~d~~~~~~~~l~~~-----~~~~~p~~spdg~~l  379 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGG----G----------------FNIAVMDLDGGGERVLTDT-----GLDESPSFAPNGRMI  379 (417)
T ss_pred             cCeEECCCCCEEEEEEccCC----c----------------eEEEEEeCCCCCeEEccCC-----CCCCCceECCCCCEE
Confidence            78899999998888764320    0                0122222222111111110     011257899999999


Q ss_pred             EEEecCCCCCcceEEeccCCCcee
Q 004203          319 SLQHTEHDSGATRTQQSLRSSSSV  342 (768)
Q Consensus       319 v~~~~d~~~Gs~~~~~~~~ss~~~  342 (768)
                      ++...++.. ...+....++....
T Consensus       380 ~~~~~~~~~-~~l~~~~~~g~~~~  402 (417)
T TIGR02800       380 LYATTRGGR-GVLGLVSTDGRFRA  402 (417)
T ss_pred             EEEEeCCCc-EEEEEEECCCceee
Confidence            998665433 34555555554443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=1.7e-11  Score=134.26  Aligned_cols=174  Identities=14%  Similarity=0.150  Sum_probs=142.1

Q ss_pred             CCC-EEEEEeCCCeEEEEeCCCCC------CCCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           80 ARR-GLASWVEAESLHHLRPKYCP------LSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        80 ~g~-~LvSgs~DgsIrlWd~~t~~------L~gH~-~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      .+. .+++.+...-...||+++.+      +.++. ..+.....|+|+++|+..+..|.|.+....|++.+..++ -.+.
T Consensus       268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~  346 (514)
T KOG2055|consen  268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGV  346 (514)
T ss_pred             CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccE
Confidence            444 88888888899999998763      33444 468889999999999999999999999999999998887 4677


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCe--EEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCC
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGELLAVASGHK-LYIWRYNMREETSSP  228 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V--~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~  228 (768)
                      |..++|+. +++.|+..+.+|.|++||++...++..+...+.|  +++|.+++|.+||+|++.+ |.|||.++......|
T Consensus       347 v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P  425 (514)
T KOG2055|consen  347 VSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP  425 (514)
T ss_pred             EeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence            99999998 8899999999999999999999999998777765  4577779999999999876 999998765332222


Q ss_pred             eE---eecCCCCeEEEEEccCCCeEEEEEe
Q 004203          229 RI---VLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       229 ~~---l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..   +..-...|++++|++|++.|+..+.
T Consensus       426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  426 KPIKTVDNLTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             CchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence            22   2223568999999999997766655

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=1.5e-10  Score=131.62  Aligned_cols=187  Identities=16%  Similarity=0.117  Sum_probs=147.1

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPP-PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH-~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (768)
                      ...|.......|+.+-.++.|.+|++...     .+.++ .+.|.+++|+ ++..|++.+.+|.|.-||+.+++....+.
T Consensus        29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d  107 (691)
T KOG2048|consen   29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNID  107 (691)
T ss_pred             EEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEec
Confidence            34455566677999999999999999865     24444 5679999999 66778899999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--ec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMR  222 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~  222 (768)
                      ...+.|++++.+| .++.++.|+.||.++++++..++....  +. ..+.+.++.|+|++..|+.|+.|+ |++||+.++
T Consensus       108 ~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~  186 (691)
T KOG2048|consen  108 SNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG  186 (691)
T ss_pred             CCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence            9999999999999 889999999999888888888877654  33 458999999999999999999666 999999988


Q ss_pred             ccccCCeE-eec----CCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203          223 EETSSPRI-VLR----TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (768)
Q Consensus       223 ~~~~~~~~-l~~----h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg  262 (768)
                      ........ +.+    ...-|++|.|-.|+. |+++-+     .||-..+
T Consensus       187 ~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  187 QTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             ceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc
Confidence            76431111 111    223588899887776 554332     5655543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.35  E-value=2.6e-12  Score=144.12  Aligned_cols=175  Identities=18%  Similarity=0.197  Sum_probs=133.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (768)
                      +..+|+.+.+|+.|++|.+..+           .++.|.+.|+++.|+| -.+.|++++.|.+|++||+.+++....|.+
T Consensus       639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g  718 (1012)
T KOG1445|consen  639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG  718 (1012)
T ss_pred             ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence            5678999999999999998754           4778999999999999 678999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEec--CCCCeEEEEEcCCCCEEEEEECCe-----EEEEEc
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSRD--FYRPIASIAFHASGELLAVASGHK-----LYIWRY  219 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l~--h~~~V~svafSPDG~~LatgSdd~-----I~IWDl  219 (768)
                      |++.|..++||| +|+.+++.+.||+|++|+-++++. ++.-.  ....-..+.|.-||+++++.+-++     |.+||.
T Consensus       719 HtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  719 HTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA  797 (1012)
T ss_pred             CcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence            999999999999 999999999999999999988654 22211  223456788999999888776433     899987


Q ss_pred             CCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .+-.............-.+.--.+.+|...++.++.
T Consensus       798 q~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK  833 (1012)
T KOG1445|consen  798 QTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK  833 (1012)
T ss_pred             hhccCCcceeeeecccCccccccccCCCceEEEecC
Confidence            765431111111222222223345667666666654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=2.3e-10  Score=130.45  Aligned_cols=221  Identities=17%  Similarity=0.137  Sum_probs=138.7

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (768)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL  165 (768)
                      .|.++|....   .+..+...+....|||||++|+..+.+   ..|++||+.+++.... ....+......|+| |++.|
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSP-DG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSP-DGKKL  276 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECC-CCCEE
Confidence            4666666443   355677788999999999999877653   3699999998875332 22233344689999 77766


Q ss_pred             EE-EeCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeEeecCCCCe
Q 004203          166 AS-GSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       166 aS-gS~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d~--I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      +. .+.++  .|++||+.+++......+.......+|+|||++|++.++  +.  |+++|+.+++...    +.......
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----Lt~~g~~~  352 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----LTFEGEQN  352 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----EecCCCCC
Confidence            54 56666  488889998877665555556678899999999988774  22  7778887665322    22222334


Q ss_pred             EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI  318 (768)
                      ....|+|||++++++......      .              .+...+..++....+... .    ....|.|+|||+.|
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~------~--------------~I~~~dl~~g~~~~lt~~-~----~d~~ps~spdG~~I  407 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGK------F--------------NIARQDLETGAMQVLTST-R----LDESPSVAPNGTMV  407 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCc------e--------------EEEEEECCCCCeEEccCC-C----CCCCceECCCCCEE
Confidence            457999999998886542110      0              122222222211111111 0    11257899999999


Q ss_pred             EEEecCCCCCcceEEeccCCCceeee
Q 004203          319 SLQHTEHDSGATRTQQSLRSSSSVRL  344 (768)
Q Consensus       319 v~~~~d~~~Gs~~~~~~~~ss~~~rl  344 (768)
                      ++....+. ...++..+.++...+++
T Consensus       408 ~~~~~~~g-~~~l~~~~~~G~~~~~l  432 (448)
T PRK04792        408 IYSTTYQG-KQVLAAVSIDGRFKARL  432 (448)
T ss_pred             EEEEecCC-ceEEEEEECCCCceEEC
Confidence            99765443 23456666666555544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=2.6e-10  Score=128.58  Aligned_cols=222  Identities=13%  Similarity=0.105  Sum_probs=141.9

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (768)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL  165 (768)
                      .|.++|.+..   .+..+...+....|||||++|+..+.+   ..|++||+++++... +....+.+....|+| |++.|
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~l  257 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSKL  257 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCEE
Confidence            3667776644   355677889999999999999877653   479999999887544 333334455689999 77766


Q ss_pred             E-EEeCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC--e--EEEEEcCCCccccCCeEeecCCCCe
Q 004203          166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       166 a-SgS~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd--~--I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      + +.+.++  .|++||+.+++......+........|+|||+.|++.++.  .  |+++|+.+++...    +.......
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----lt~~~~~~  333 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----VTFVGNYN  333 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eecCCCCc
Confidence            6 455555  6999999998776655555566678999999998888742  2  8888887765322    22222334


Q ss_pred             EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI  318 (768)
                      ....|+|||++++.+.....    .                ..+.+.+..++....+. ...    ....|.|+|||+.|
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~----~----------------~~l~~~dl~tg~~~~lt-~~~----~~~~p~~spdg~~i  388 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDG----N----------------FHVAAQDLQRGSVRILT-DTS----LDESPSVAPNGTML  388 (430)
T ss_pred             cceEECCCCCEEEEEEccCC----c----------------eEEEEEECCCCCEEEcc-CCC----CCCCceECCCCCEE
Confidence            46789999999887764211    0                01333333322221111 110    11257999999999


Q ss_pred             EEEecCCCCCcceEEeccCCCceeeee
Q 004203          319 SLQHTEHDSGATRTQQSLRSSSSVRLL  345 (768)
Q Consensus       319 v~~~~d~~~Gs~~~~~~~~ss~~~rl~  345 (768)
                      ++...+... ..++..+.++....+++
T Consensus       389 ~~~~~~~g~-~~l~~~~~~g~~~~~l~  414 (430)
T PRK00178        389 IYATRQQGR-GVLMLVSINGRVRLPLP  414 (430)
T ss_pred             EEEEecCCc-eEEEEEECCCCceEECc
Confidence            997554332 33555566655554443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.34  E-value=9.7e-11  Score=129.42  Aligned_cols=171  Identities=16%  Similarity=0.244  Sum_probs=137.9

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe------------
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS------------  140 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~------------  140 (768)
                      .-..+..++++..+|.|.+|+..+++    ...|.+.|.+++.-.+|.+|- |+.|..|..||-.-.+            
T Consensus       253 ~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~  331 (626)
T KOG2106|consen  253 TFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGP  331 (626)
T ss_pred             EEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCC
Confidence            33456778899999999999998762    348999999999999997765 9999999999831100            


Q ss_pred             ----------------------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Q 004203          141 ----------------------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR  192 (768)
Q Consensus       141 ----------------------------~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~  192 (768)
                                                  ......+|+...+.++.+| +.+.+++++.|+.++||+  ..+.+.+.....
T Consensus       332 iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d  408 (626)
T KOG2106|consen  332 IRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIED  408 (626)
T ss_pred             eeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecC
Confidence                                        0012247888899999999 899999999999999999  666777777889


Q ss_pred             CeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEee
Q 004203          193 PIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEV  256 (768)
Q Consensus       193 ~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~sv  256 (768)
                      ++.+++|+|.| .++.|+ .|...+.|..+...+.    +.....+++.+.|+|+|.+|+.++..
T Consensus       409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~----~~~d~~~ls~v~ysp~G~~lAvgs~d  468 (626)
T KOG2106|consen  409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT----IHTDNEQLSVVRYSPDGAFLAVGSHD  468 (626)
T ss_pred             ceeEeeccCcc-eEEEeeccceEEEEecccceeEE----EEecCCceEEEEEcCCCCEEEEecCC
Confidence            99999999999 888888 5669999998865433    33338899999999999988877653

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=1.2e-10  Score=122.61  Aligned_cols=168  Identities=19%  Similarity=0.198  Sum_probs=131.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCC---------CC
Q 004203           79 DARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQ---------TG  139 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~--------~L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~---------tg  139 (768)
                      -.|+++++++.|++|++||.+..        ..+.|.+.|..+.|.+  =|+.+|+++.|+++.||.-.         ..
T Consensus        23 ~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~W  102 (361)
T KOG2445|consen   23 FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRW  102 (361)
T ss_pred             ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccccee
Confidence            36899999999999999996533        3568999999999987  68999999999999999752         12


Q ss_pred             eEEEEEecCCCCcEEEEEccCC-CCEEEEEeCCCeEEEEECCCCcE------EEEec--------CCCCeEEEEEcCC--
Q 004203          140 SCLKVLHGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAEC------IGSRD--------FYRPIASIAFHAS--  202 (768)
Q Consensus       140 ~~l~~l~gH~g~V~sVafSP~d-g~lLaSgS~DgtVrLWDl~sg~~------i~~l~--------h~~~V~svafSPD--  202 (768)
                      ....++......|+.|.|.|.. |-.+|+++.||.||||+.-....      +..+.        +.....|+.|+|.  
T Consensus       103 v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~  182 (361)
T KOG2445|consen  103 VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM  182 (361)
T ss_pred             EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccc
Confidence            3456677778899999999933 44788999999999998765332      22222        5567889999974  


Q ss_pred             -CCEEEEEECC------eEEEEEcCCCc-cccCCeEeecCCCCeEEEEEccC
Q 004203          203 -GELLAVASGH------KLYIWRYNMRE-ETSSPRIVLRTRRSLRAVHFHPH  246 (768)
Q Consensus       203 -G~~LatgSdd------~I~IWDl~t~~-~~~~~~~l~~h~~~V~sVaFSPD  246 (768)
                       ..+|++|+++      +++||...... .-.....+.+|..+|++|+|.|+
T Consensus       183 ~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  183 HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence             4589999977      69999886654 22223356689999999999996

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.32  E-value=6.1e-11  Score=134.78  Aligned_cols=242  Identities=14%  Similarity=0.202  Sum_probs=171.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC---------C--------------------------------CCCCCCeEEEEECCC
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP---------L--------------------------------SPPPRSTIAAAFSPD  118 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~---------L--------------------------------~gH~~~VtslafSPD  118 (768)
                      ....+++++.|++|++|+++.++         +                                ....-.|.+++.|||
T Consensus       391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~  470 (1080)
T KOG1408|consen  391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD  470 (1080)
T ss_pred             CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence            45679999999999999998631         0                                023446899999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccC--CCCEEEEEeCCCeEEEEECCCC-cEEEEe-cCCCCe
Q 004203          119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL--NPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPI  194 (768)
Q Consensus       119 G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~--dg~lLaSgS~DgtVrLWDl~sg-~~i~~l-~h~~~V  194 (768)
                      |++||+|..-|+++|||+..-+....+..|...|.|+.|+-.  ..++||++++|.-|++||+... .++.++ +|...|
T Consensus       471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI  550 (1080)
T KOG1408|consen  471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI  550 (1080)
T ss_pred             cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence            999999999999999999999988999999999999999841  3468999999999999999754 345555 488999


Q ss_pred             EEEEEcCCC--CEEEEEECCeEEEEEcCCCccccCCeEee---cCCCCeEEEEEccCCCeEEEEEeeC-----CcCCCCc
Q 004203          195 ASIAFHASG--ELLAVASGHKLYIWRYNMREETSSPRIVL---RTRRSLRAVHFHPHAAPLLLTAEVN-----DLDSSES  264 (768)
Q Consensus       195 ~svafSPDG--~~LatgSdd~I~IWDl~t~~~~~~~~~l~---~h~~~V~sVaFSPDG~~LlaS~svw-----dl~sg~~  264 (768)
                      +++.|--.|  ..+++++.|+..+|+...+......+...   -....++.++..|..+++++.+.+.     ++.+++.
T Consensus       551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq  630 (1080)
T KOG1408|consen  551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ  630 (1080)
T ss_pred             eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence            999998877  57777777775556654422111011111   1246789999999999999888744     4455555


Q ss_pred             ceeEeecCCccc-----------------CCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          265 SLTLATSPGYWR-----------------YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       265 ~~~L~t~~G~~~-----------------~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                      .+.+....++..                 +....+++.+..++++..-..+...   -+.-..|++|=+.|+..-.|
T Consensus       631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE---~VTG~kF~nDCkHlISvsgD  704 (1080)
T KOG1408|consen  631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE---AVTGVKFLNDCKHLISVSGD  704 (1080)
T ss_pred             eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch---heeeeeecccchhheeecCC
Confidence            555555555522                 2234455555555555444433211   22367899998888775443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.29  E-value=2.3e-10  Score=129.43  Aligned_cols=229  Identities=13%  Similarity=0.130  Sum_probs=144.1

Q ss_pred             CCCCCcceecccccccccCCCccccceeecCCcceeecCCCCeEEE-EEecCCCEEEEEeCCCeEEEEeCCCCC------
Q 004203           30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFE-AGRDARRGLASWVEAESLHHLRPKYCP------  102 (768)
Q Consensus        30 ~rssk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~~~l~~-a~~d~g~~LvSgs~DgsIrlWd~~t~~------  102 (768)
                      ...+...++++......+......+.. .....+..+-..++.++- ....+...|++.+-|.+++.||++...      
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr-~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~  139 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFR-LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRL  139 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcc-hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeeccee
Confidence            345566667776666555544443333 000111111111112211 122377889999999999999998763      


Q ss_pred             CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe---------------------------EEEEEecCCCCcEE
Q 004203          103 LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---------------------------CLKVLHGHRRTPWV  154 (768)
Q Consensus       103 L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~---------------------------~l~~l~gH~g~V~s  154 (768)
                      +.||.+.|.+++|.| |...|++|+.||.|.|||++-..                           .+..-+.+...|..
T Consensus       140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s  219 (720)
T KOG0321|consen  140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS  219 (720)
T ss_pred             ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence            679999999999999 56788999999999999985321                           01111233444444


Q ss_pred             ---EEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEEe------c---C---CCCeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004203          155 ---VRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSR------D---F---YRPIASIAFHASGELLAVAS-GHKLYIW  217 (768)
Q Consensus       155 ---VafSP~dg~lLaSgS~-DgtVrLWDl~sg~~i~~l------~---h---~~~V~svafSPDG~~LatgS-dd~I~IW  217 (768)
                         +.+.. |...||+++. |+.|++||+++.......      .   +   ...+.++..+..|.+|.+.+ |+.|++|
T Consensus       220 svTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y  298 (720)
T KOG0321|consen  220 SVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY  298 (720)
T ss_pred             eeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence               45556 7888888777 999999999976543221      1   2   22566777777788766555 7779999


Q ss_pred             EcCCCccccCCeEeecCCCC--eEEEEEccCCCeEEEEEe-----eCCcCC
Q 004203          218 RYNMREETSSPRIVLRTRRS--LRAVHFHPHAAPLLLTAE-----VNDLDS  261 (768)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~--V~sVaFSPDG~~LlaS~s-----vwdl~s  261 (768)
                      ++....... ...+.++...  -..-..+||+.+++.++.     +|.+..
T Consensus       299 nm~s~s~sP-~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~  348 (720)
T KOG0321|consen  299 NMRSLSISP-VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS  348 (720)
T ss_pred             eccccCcCc-hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence            998765422 1222222211  122347899998888766     666653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=3.5e-11  Score=130.88  Aligned_cols=183  Identities=20%  Similarity=0.163  Sum_probs=136.8

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (768)
Q Consensus        72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (768)
                      ...++...++..|++|..||.+|+|+....    .+..|.+.|.++.|||||++|++-+.| ..+||+.++|..+.....
T Consensus       147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            356666678899999999999999995443    466899999999999999999999999 999999999976655431


Q ss_pred             --CCCCcEEEEEccCCC-----CEEEEEeCCCeEEEEECCCCcE------EEEecCCCCeEEEEEcCCCCEEEEEE-CCe
Q 004203          148 --HRRTPWVVRFHPLNP-----TIIASGSLDHEVRLWNASTAEC------IGSRDFYRPIASIAFHASGELLAVAS-GHK  213 (768)
Q Consensus       148 --H~g~V~sVafSP~dg-----~lLaSgS~DgtVrLWDl~sg~~------i~~l~h~~~V~svafSPDG~~LatgS-dd~  213 (768)
                        .......+.|+- |+     .+++.-..-+.|++||+.....      .+.......|.+++.++||++++.|+ +|.
T Consensus       226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs  304 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS  304 (398)
T ss_pred             cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence              222345678887 54     2333334455677777654322      11123456899999999999999999 455


Q ss_pred             EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004203          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND  258 (768)
Q Consensus       214 I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwd  258 (768)
                      |-|++..+.+...  .....|..-|+.+.|+||.++++..+..|.
T Consensus       305 Vai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~  347 (398)
T KOG0771|consen  305 VAIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPDSRYLASVSSDNE  347 (398)
T ss_pred             EEEEEeceeeeeE--eehhhheeeeeeEEEcCCcCcccccccCCc
Confidence            9999988776643  334558889999999999998877655443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=2.3e-11  Score=128.17  Aligned_cols=145  Identities=17%  Similarity=0.171  Sum_probs=115.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q 004203          110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD  189 (768)
Q Consensus       110 VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~  189 (768)
                      ..|+.||+.|.+||+|..||.|.|||+.|...-+.+.+|..+|.+++||+ +|+.|+++|+|..|.+||+..|.+.+.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            78999999999999999999999999999998899999999999999999 99999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCCEEEEE--ECCeEEEEEcCCCccccCCeEeecC-CCCeEEEEEccCCCeEEEEEe
Q 004203          190 FYRPIASIAFHASGELLAVA--SGHKLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       190 h~~~V~svafSPDG~~Latg--Sdd~I~IWDl~t~~~~~~~~~l~~h-~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...+|..+.|+|.....+++  -+..-.+.++........+..-.+. ...-....|++.|++++++.+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts  173 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS  173 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC
Confidence            99999999999965544444  3555666666543321101111111 122234469999999887754

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=6.3e-11  Score=129.88  Aligned_cols=210  Identities=18%  Similarity=0.169  Sum_probs=154.1

Q ss_pred             CCCcceecccccccccCCCccccceeecCCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCC---CCCC
Q 004203           32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS---PPPR  108 (768)
Q Consensus        32 ssk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~---gH~~  108 (768)
                      +.+|-++|+++..+...........   ..         .-..+..+..+..|+..+..|-|.+....++++.   .-.+
T Consensus       278 rrky~ysyDle~ak~~k~~~~~g~e---~~---------~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG  345 (514)
T KOG2055|consen  278 RRKYLYSYDLETAKVTKLKPPYGVE---EK---------SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG  345 (514)
T ss_pred             cceEEEEeeccccccccccCCCCcc---cc---------hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc
Confidence            5678888888665554332222211   00         1122334455668888888999999999888654   3467


Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE--EEEEccCCCCEEEEEeCCCeEEEEECCC-----
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW--VVRFHPLNPTIIASGSLDHEVRLWNAST-----  181 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~--sVafSP~dg~lLaSgS~DgtVrLWDl~s-----  181 (768)
                      .|.++.|+.|++.|+.++.+|.|++||++...++..+...+ .|.  .++.++ ++.+||+|+..|.|.|||.++     
T Consensus       346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~  423 (514)
T KOG2055|consen  346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFAST  423 (514)
T ss_pred             EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-ccceeeeeecC-CCceEEeccCcceEEEeccchhhccC
Confidence            89999999999999999999999999999999999887543 343  466678 899999999999999999764     


Q ss_pred             -CcEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          182 -AECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       182 -g~~i~~l~-h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                       .+++..+. ....|+++.|++|+++|+.+|.   +.+++-.+.+...-......-..-..|++++|||.|-+++.+..
T Consensus       424 ~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe  502 (514)
T KOG2055|consen  424 NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE  502 (514)
T ss_pred             CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence             34444443 5678999999999999999984   34999988776543211112233467999999999998887654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.27  E-value=1.2e-11  Score=132.16  Aligned_cols=155  Identities=14%  Similarity=0.203  Sum_probs=122.5

Q ss_pred             CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 004203          105 PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE  183 (768)
Q Consensus       105 gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~  183 (768)
                      --...|.++.|+| .-..|++|+.|+.|.+||++++.+++.+.- +-.-+.|+|+| ....+++++.|..++.+|++.-+
T Consensus       185 wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~  262 (433)
T KOG0268|consen  185 WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS  262 (433)
T ss_pred             cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCc-cccceeeccccccceehhhhhhc
Confidence            3456789999999 556788888999999999999988766542 33456799999 99999999999999999998743


Q ss_pred             -EEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203          184 -CIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (768)
Q Consensus       184 -~i~~-l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~  260 (768)
                       ++.. .+|.+.|.+++|+|.|+-+++|+.|+ |+||.++.+..-.  .....--..|.+|.||-|.+++++++..-+++
T Consensus       263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR  340 (433)
T KOG0268|consen  263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR  340 (433)
T ss_pred             ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh--hhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence             3333 46889999999999999999999666 9999998775422  11112235699999999999988887766665


Q ss_pred             CCC
Q 004203          261 SSE  263 (768)
Q Consensus       261 sg~  263 (768)
                      .|+
T Consensus       341 lWk  343 (433)
T KOG0268|consen  341 LWK  343 (433)
T ss_pred             eee
Confidence            443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=2.8e-10  Score=115.38  Aligned_cols=149  Identities=19%  Similarity=0.265  Sum_probs=121.8

Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--------CCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 004203           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG  139 (768)
Q Consensus        71 ~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~--------~L~g---H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg  139 (768)
                      +.++..-.-.+-.+++++.|++|++||++-.        .+.+   ....|.+++..|.|++|++|..|....+||++.+
T Consensus       184 ghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~  263 (350)
T KOG0641|consen  184 GHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG  263 (350)
T ss_pred             ccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence            3444444446778889999999999999743        1221   2357999999999999999999999999999999


Q ss_pred             eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC---c--EEEEecCCCCeEEEEEcCCCCEEEEEECC-e
Q 004203          140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---E--CIGSRDFYRPIASIAFHASGELLAVASGH-K  213 (768)
Q Consensus       140 ~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg---~--~i~~l~h~~~V~svafSPDG~~LatgSdd-~  213 (768)
                      +.+..|..|...|+++.|+| ...++++++.|..|++-|++..   +  .+..-.|...+-.+.|+|+.-.+++.+.+ +
T Consensus       264 r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  264 RMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             ceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence            99999999999999999999 9999999999999999999742   1  12223588889999999988767766655 4


Q ss_pred             EEEEEcC
Q 004203          214 LYIWRYN  220 (768)
Q Consensus       214 I~IWDl~  220 (768)
                      +.+|-+.
T Consensus       343 ~tlwa~~  349 (350)
T KOG0641|consen  343 ATLWALN  349 (350)
T ss_pred             EEEeccC
Confidence            9999764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.27  E-value=1.2e-10  Score=128.43  Aligned_cols=174  Identities=16%  Similarity=0.229  Sum_probs=143.8

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCC-CCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEE-EecCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPP-PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKV-LHGHR  149 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH-~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~  149 (768)
                      -.....+|++++..|.|.+-...++    +|.-. ...|.-+.|++..+ +|.+++++|.|.+||+........ .+.|.
T Consensus       129 YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs  208 (673)
T KOG4378|consen  129 YNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS  208 (673)
T ss_pred             ecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc
Confidence            3456788999999999999998876    34333 34567999999666 456889999999999987665543 46799


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP  228 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~  228 (768)
                      .+...|+|+|.+..+|++.+.|+.|.+||+++.+....+....+...++|.++|.+|+.|+ .|+|..||++..+.  +.
T Consensus       209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~--Pv  286 (673)
T KOG4378|consen  209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA--PV  286 (673)
T ss_pred             CCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC--Cc
Confidence            9999999999888899999999999999999988888888888999999999999999998 56699999998775  33


Q ss_pred             eEeecCCCCeEEEEEccCCCeEEEE
Q 004203          229 RIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ..+..|...|++|+|-|.- .++.-
T Consensus       287 ~v~sah~~sVt~vafq~s~-tvltk  310 (673)
T KOG4378|consen  287 AVRSAHDASVTRVAFQPSP-TVLTK  310 (673)
T ss_pred             eEeeecccceeEEEeeecc-eeeec
Confidence            4566789999999998865 34443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=3.6e-11  Score=134.44  Aligned_cols=173  Identities=14%  Similarity=0.205  Sum_probs=139.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------C-
Q 004203           80 ARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------G-  139 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-------g-  139 (768)
                      ....|+++++|+.|++|+++..            +|.+|.++|.|++..+++..+++|+.||+|+.|++..       . 
T Consensus       305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d  384 (577)
T KOG0642|consen  305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD  384 (577)
T ss_pred             CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence            4567999999999999999321            4779999999999999999999999999999995531       1 


Q ss_pred             --eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---------------------------------
Q 004203          140 --SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---------------------------------  184 (768)
Q Consensus       140 --~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---------------------------------  184 (768)
                        .....|.||++.|+.+++|+ ....|++++.||+|++|+......                                 
T Consensus       385 p~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~  463 (577)
T KOG0642|consen  385 PSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGY  463 (577)
T ss_pred             cchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccccc
Confidence              23467889999999999999 888899999999999998764332                                 


Q ss_pred             -----------EEEec--------CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEc
Q 004203          185 -----------IGSRD--------FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFH  244 (768)
Q Consensus       185 -----------i~~l~--------h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFS  244 (768)
                                 +..+.        ....+..+.++|.+.+.+++-.+. |+++|..++....   ....|...++++++.
T Consensus       464 ~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~---s~~a~~~svtslai~  540 (577)
T KOG0642|consen  464 TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH---SMVAHKDSVTSLAID  540 (577)
T ss_pred             ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch---heeeccceecceeec
Confidence                       00000        012356688899988888877655 9999999887543   677889999999999


Q ss_pred             cCCCeEEEEEee
Q 004203          245 PHAAPLLLTAEV  256 (768)
Q Consensus       245 PDG~~LlaS~sv  256 (768)
                      |+|.++++++..
T Consensus       541 ~ng~~l~s~s~d  552 (577)
T KOG0642|consen  541 PNGPYLMSGSHD  552 (577)
T ss_pred             CCCceEEeecCC
Confidence            999988877653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=1.1e-10  Score=128.05  Aligned_cols=167  Identities=13%  Similarity=0.130  Sum_probs=137.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCCeE
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSC  141 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~-------------~L~gH~~~VtslafSPD--G~~LaSgS~DgtVrVWDl~tg~~  141 (768)
                      ..+++..++++++||.|.+|++..-             .+..|+-+|+++...+-  ..+|+++|.|.++|+||+..|..
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L  210 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL  210 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence            5578999999999999999987521             46789999999999874  36899999999999999999998


Q ss_pred             EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE----------------EEE-ecCCC--CeEEEEEcCC
Q 004203          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC----------------IGS-RDFYR--PIASIAFHAS  202 (768)
Q Consensus       142 l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~----------------i~~-l~h~~--~V~svafSPD  202 (768)
                      +.++.- ...+.+++.+| .+..++.|+.+|.|.+.++..-..                +.. .+|.+  .|+|++.+-|
T Consensus       211 Llti~f-p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D  288 (476)
T KOG0646|consen  211 LLTITF-PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD  288 (476)
T ss_pred             eEEEec-CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence            888764 45699999999 899999999999999988864321                111 24666  9999999999


Q ss_pred             CCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCC
Q 004203          203 GELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA  248 (768)
Q Consensus       203 G~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~  248 (768)
                      |..|++|+ |+++.|||+.+.+.++   .+..-.++|+.+.+.|--+
T Consensus       289 gtlLlSGd~dg~VcvWdi~S~Q~iR---tl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  289 GTLLLSGDEDGKVCVWDIYSKQCIR---TLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             ccEEEeeCCCCCEEEEecchHHHHH---HHhhhccccceeEeecccc
Confidence            99999999 5569999999988765   3333678899999977544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.25  E-value=5.3e-10  Score=116.89  Aligned_cols=167  Identities=29%  Similarity=0.398  Sum_probs=135.0

Q ss_pred             EEEEEeC-CCeEEEEeCCC--C---CCCCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           83 GLASWVE-AESLHHLRPKY--C---PLSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        83 ~LvSgs~-DgsIrlWd~~t--~---~L~gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      .+...+. |+.+.+|+...  .   .+..|...|.++.|+|+++++++++. |+.+++|++.+++.+..+.+|...|.++
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  204 (466)
T COG2319         125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL  204 (466)
T ss_pred             EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence            3444344 88999999986  2   57899999999999999999999886 9999999999988999999999999999


Q ss_pred             EEccCCCC-EEEEEeCCCeEEEEECCCCcEEE-Ee-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEe
Q 004203          156 RFHPLNPT-IIASGSLDHEVRLWNASTAECIG-SR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIV  231 (768)
Q Consensus       156 afSP~dg~-lLaSgS~DgtVrLWDl~sg~~i~-~l-~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l  231 (768)
                      +|+| ++. ++++++.|+.|++||...+.... .+ .|.... ...|+|++.++++++.+ .+++||+......  ....
T Consensus       205 ~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~  280 (466)
T COG2319         205 AFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL--LRTL  280 (466)
T ss_pred             EEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE--EEEE
Confidence            9998 776 66666999999999999887777 34 355554 33899999888877754 4999999877641  1122


Q ss_pred             ecCCCCeEEEEEccCCCeEEEE
Q 004203          232 LRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ..|...|.++.|+|++..+++.
T Consensus       281 ~~~~~~v~~~~~~~~~~~~~~~  302 (466)
T COG2319         281 SGHSSSVLSVAFSPDGKLLASG  302 (466)
T ss_pred             ecCCccEEEEEECCCCCEEEEe
Confidence            5678999999999988877763

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.25  E-value=9.3e-11  Score=130.41  Aligned_cols=171  Identities=14%  Similarity=0.229  Sum_probs=131.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC--------CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC-----------
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPL--------SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT-----------  138 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L--------~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~t-----------  138 (768)
                      .++..+..+-..|.|++.|....++        .-.+..|+++.|-| +...|+.+..+|.+++||.+-           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            4666777888888898888765421        12347899999999 556777788899999997631           


Q ss_pred             ---CeE--------------EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEc
Q 004203          139 ---GSC--------------LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFH  200 (768)
Q Consensus       139 ---g~~--------------l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafS  200 (768)
                         +..              +..+.--.+.|+..+|+| |+++||+.+.||.+||||..+.+.+...+ .-+...|++|+
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence               111              111112245688899999 99999999999999999999877766654 45788999999


Q ss_pred             CCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeC
Q 004203          201 ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (768)
Q Consensus       201 PDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svw  257 (768)
                      |||++|++|+.|. |.||.+..++.+.   .-.+|+.+|..|+|.|    ..++.+.|
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVA---RGqGHkSWVs~VaFDp----ytt~~ee~  392 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVA---RGQGHKSWVSVVAFDP----YTTSTEEW  392 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEE---eccccccceeeEeecc----cccccccc
Confidence            9999999999666 9999998887654   5678999999999998    34444444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.25  E-value=6.7e-10  Score=113.00  Aligned_cols=141  Identities=18%  Similarity=0.248  Sum_probs=99.0

Q ss_pred             EEEEECCCCCEEEEEeC----------CCeEEEEeC--CCCeEEEEEe-cCCCCcEEEEEccCCCCEEEE--EeCCCeEE
Q 004203          111 IAAAFSPDGKTLASTHG----------DHTVKIIDC--QTGSCLKVLH-GHRRTPWVVRFHPLNPTIIAS--GSLDHEVR  175 (768)
Q Consensus       111 tslafSPDG~~LaSgS~----------DgtVrVWDl--~tg~~l~~l~-gH~g~V~sVafSP~dg~lLaS--gS~DgtVr  175 (768)
                      ..+.|+++|++|+.-..          -+...+|.+  ... ....+. ...++|.+++|+| +++.|+.  |..++.|.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccE
Confidence            46789999988764433          123444444  333 233332 2345799999999 7776544  44677999


Q ss_pred             EEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC----CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203          176 LWNASTAECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       176 LWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd----d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Ll  251 (768)
                      |||++ ++.+..+. ...++.+.|+|+|++|++++-    |.|.+||.++.+.+.    ...| ..+..++|+|||++++
T Consensus        87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~-~~~t~~~WsPdGr~~~  159 (194)
T PF08662_consen   87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEH-SDATDVEWSPDGRYLA  159 (194)
T ss_pred             EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----cccc-CcEEEEEEcCCCCEEE
Confidence            99997 66666665 467789999999999999872    349999999766533    2233 4578999999999999


Q ss_pred             EEEeeCCcC
Q 004203          252 LTAEVNDLD  260 (768)
Q Consensus       252 aS~svwdl~  260 (768)
                      ++...+.++
T Consensus       160 ta~t~~r~~  168 (194)
T PF08662_consen  160 TATTSPRLR  168 (194)
T ss_pred             EEEecccee
Confidence            887765444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.24  E-value=7.5e-10  Score=112.63  Aligned_cols=112  Identities=16%  Similarity=0.359  Sum_probs=91.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEe--CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC---CeEEEEECC
Q 004203          106 PPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD---HEVRLWNAS  180 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS--~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~D---gtVrLWDl~  180 (768)
                      ..+.|.+++|+|+|+.|++..  .+..|.+||++ ++.+..+.  ...++.+.|+| +|++++.++.+   |.|.+||++
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence            345699999999999987654  46799999997 66666664  56788999999 99999987754   679999999


Q ss_pred             CCcEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCC
Q 004203          181 TAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMR  222 (768)
Q Consensus       181 sg~~i~~l~h~~~V~svafSPDG~~LatgS-------dd~I~IWDl~t~  222 (768)
                      +.+.+....|.. +..++|+|||++|++++       +++++||++...
T Consensus       134 ~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  134 KKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            988888877665 68999999999999886       345999998644

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.24  E-value=4e-10  Score=119.30  Aligned_cols=221  Identities=15%  Similarity=0.187  Sum_probs=157.5

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC-CCC--eEEEEEe
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTG--SCLKVLH  146 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl-~tg--~~l~~l~  146 (768)
                      ...++..++.+.+...|.++.....       +++.|...|++++|+|..+.|++|+.|..-++|.. +.+  +....+.
T Consensus        18 wn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl   97 (361)
T KOG1523|consen   18 WNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL   97 (361)
T ss_pred             ecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE
Confidence            3456777888888888999887654       57899999999999999999999999999999998 333  4556667


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-----ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc-
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVAS-GHKLYIWRY-  219 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-----l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl-  219 (768)
                      .+.+.+++|.|+| .++.||+|+.-+.|.||-++...--..     ..+...|.+++|+|++-+|+.|+ |++.+++.. 
T Consensus        98 RiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay  176 (361)
T KOG1523|consen   98 RINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY  176 (361)
T ss_pred             EeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence            7899999999999 999999999999999998876554322     23667899999999999999998 566777653 


Q ss_pred             ----CCCcccc-----CCe-----EeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEe
Q 004203          220 ----NMREETS-----SPR-----IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMA  285 (768)
Q Consensus       220 ----~t~~~~~-----~~~-----~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~  285 (768)
                          +......     .|+     ......+.|..+.|+|+|..|+..+-                       +..+.+.
T Consensus       177 IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-----------------------ds~v~~~  233 (361)
T KOG1523|consen  177 IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-----------------------DSTVSFV  233 (361)
T ss_pred             eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-----------------------CCceEEe
Confidence                2221100     000     01133578999999999998865442                       1234444


Q ss_pred             cCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          286 GAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       286 d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                      +...+..  .........+|++...|-.+..-+.++.+
T Consensus       234 da~~p~~--~v~~~~~~~lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  234 DAAGPSE--RVQSVATAQLPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             ecCCCch--hccchhhccCCceeeEeecCCceeecCCC
Confidence            4333321  11111122477888888877777776433

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.23  E-value=9.4e-11  Score=122.56  Aligned_cols=169  Identities=18%  Similarity=0.195  Sum_probs=134.6

Q ss_pred             CCeEEEEeCCCC-------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCCCCc
Q 004203           90 AESLHHLRPKYC-------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTP  152 (768)
Q Consensus        90 DgsIrlWd~~t~-------------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~g~V  152 (768)
                      +..+|+|.+...             +-..+..++++++|+. |-++|.+.|-|-+..|||++++.   ....+-.|...|
T Consensus       120 ~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV  199 (364)
T KOG0290|consen  120 SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV  199 (364)
T ss_pred             cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence            557899988632             2335677899999999 88999999999999999999873   367778999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cC-CCCeEEEEEcCCC-CEEEEEEC--CeEEEEEcCCCccc
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DF-YRPIASIAFHASG-ELLAVASG--HKLYIWRYNMREET  225 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l---~h-~~~V~svafSPDG-~~LatgSd--d~I~IWDl~t~~~~  225 (768)
                      +.++|.....+.||+.+.||.||+||++..+.-..+   .. ..+...++|+++. +++|+-..  .+|.|.|++.... 
T Consensus       200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t-  278 (364)
T KOG0290|consen  200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT-  278 (364)
T ss_pred             eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-
Confidence            999999866679999999999999999987654332   22 4577889999855 46776653  3499999998875 


Q ss_pred             cCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004203          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD  260 (768)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~  260 (768)
                       ....+..|...|+.++|.|....-+.+++      +||+.
T Consensus       279 -pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  279 -PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             -ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence             34567889999999999998876666654      77775

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.23  E-value=4.8e-09  Score=113.91  Aligned_cols=173  Identities=14%  Similarity=0.097  Sum_probs=116.8

Q ss_pred             EEeCCCeEEEEeCCC-CCC-----CCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCC-CCeE--EEEEecCCCCcEEE
Q 004203           86 SWVEAESLHHLRPKY-CPL-----SPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQ-TGSC--LKVLHGHRRTPWVV  155 (768)
Q Consensus        86 Sgs~DgsIrlWd~~t-~~L-----~gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~-tg~~--l~~l~gH~g~V~sV  155 (768)
                      +...++.|.+|++.+ +++     ..+.+....++++||+++|++++. ++.|.+|+++ +++.  +.... ..+....+
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i   85 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHI   85 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEE
Confidence            335688899999863 221     134466788999999999987754 8899999986 3432  22222 33456789


Q ss_pred             EEccCCCCEEEEEeC-CCeEEEEECCC-Cc---EEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccC-
Q 004203          156 RFHPLNPTIIASGSL-DHEVRLWNAST-AE---CIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSS-  227 (768)
Q Consensus       156 afSP~dg~lLaSgS~-DgtVrLWDl~s-g~---~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~-  227 (768)
                      .|+| +++++++++. ++.|.+||+.+ +.   .+..+........++|+|+|+++++++  ++.|.+||+++...... 
T Consensus        86 ~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028         86 STDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            9999 8887777654 78999999974 32   233333334567789999999998777  35599999986432210 


Q ss_pred             --CeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004203          228 --PRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD  260 (768)
Q Consensus       228 --~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~  260 (768)
                        ...........+.+.|+|||++++++..      +|+++
T Consensus       165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence              0011122355788999999998877654      55665

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.22  E-value=6.5e-10  Score=119.47  Aligned_cols=157  Identities=18%  Similarity=0.216  Sum_probs=133.3

Q ss_pred             eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEEe--CCCeEEEEe
Q 004203           65 KCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTH--GDHTVKIID  135 (768)
Q Consensus        65 ~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~-------L~gH~~~VtslafSPDG~~LaSgS--~DgtVrVWD  135 (768)
                      .|+..|...+.+.+-++++|+.+-++. |.++|+...+       ...+...+.++.++.++.+|+.-+  ..|.|.|||
T Consensus        81 ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   81 ICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             EEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence            466667777777777899999888876 9999998773       235777788888888888998643  378999999


Q ss_pred             CCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---CCCeEEEEEcCCCCEEEEEEC
Q 004203          136 CQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVASG  211 (768)
Q Consensus       136 l~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~sg~~i~~l~h---~~~V~svafSPDG~~LatgSd  211 (768)
                      +.+-+.+..+..|.+.+-+++|++ +|.+||++|..|+ ||++.+.+|+.+..+.-   ...|.+++|+||+++|++.++
T Consensus       160 ~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  160 TINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             cccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence            999999999999999999999999 9999999999995 89999999998888752   347889999999999998885


Q ss_pred             -CeEEEEEcCCCc
Q 004203          212 -HKLYIWRYNMRE  223 (768)
Q Consensus       212 -d~I~IWDl~t~~  223 (768)
                       ++|+++.+.+..
T Consensus       239 TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  239 TETVHIFKLEKVS  251 (391)
T ss_pred             CCeEEEEEecccc
Confidence             559999987765

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=1.8e-10  Score=122.68  Aligned_cols=181  Identities=17%  Similarity=0.244  Sum_probs=136.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCeEEEEE--ecCC-CCc
Q 004203           82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVL--HGHR-RTP  152 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l--~gH~-g~V  152 (768)
                      ..++.+...+.|+++|..++    ++++|+..++.+.|..  ....+++|+.||+|++||+++......+  .++. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            55777888899999999885    6889999999999988  4678999999999999999987655433  4444 345


Q ss_pred             EEEEEccCCCCEEEEEeC----CCeEEEEECCCCcE-EEEe--cCCCCeEEEEEcCCC-CEEEEEECCe-EEEEEcCCCc
Q 004203          153 WVVRFHPLNPTIIASGSL----DHEVRLWNASTAEC-IGSR--DFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMRE  223 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~----DgtVrLWDl~sg~~-i~~l--~h~~~V~svafSPDG-~~LatgSdd~-I~IWDl~t~~  223 (768)
                      .+++..- .+++++.|..    |-.|.+||++..+. ++.+  .|.+.|+++.|+|.. .+|++||-|+ |.+||+....
T Consensus       121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            5555544 5677777653    56899999998766 5544  389999999999965 5888998555 9999998775


Q ss_pred             cccCCeEeecCCCCeEEEEEccCC--CeEEEEE----eeCCcCCCC
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHA--APLLLTA----EVNDLDSSE  263 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG--~~LlaS~----svwdl~sg~  263 (768)
                      ..........+...|..+.|..++  +....+-    .+|++..++
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            544344566678889999999998  5333332    166666554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.21  E-value=6.8e-10  Score=122.83  Aligned_cols=170  Identities=14%  Similarity=0.160  Sum_probs=134.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC--------------------------------------------CCCCCCCeEEEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP--------------------------------------------LSPPPRSTIAAAF  115 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~--------------------------------------------L~gH~~~Vtslaf  115 (768)
                      ....|++|..|..|..||-.+.+                                            ..+|.+....++.
T Consensus       297 r~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~  376 (626)
T KOG2106|consen  297 RDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT  376 (626)
T ss_pred             cCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence            34567789999999999964321                                            1268888999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeE
Q 004203          116 SPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA  195 (768)
Q Consensus       116 SPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~  195 (768)
                      +|+..++++++.|+.+++|+  ..+.+.... -..++.++.|+| .+ .++.|...|...+.|.++...+.......+++
T Consensus       377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls  451 (626)
T KOG2106|consen  377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLS  451 (626)
T ss_pred             CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceE
Confidence            99999999999999999999  344444433 356788999999 66 99999999999999999977766655588999


Q ss_pred             EEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          196 SIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       196 svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++.|+|+|.+||+|+.|. |+||.+........... ..+..+|+.+.||+|++++.+-+.
T Consensus       452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-k~~gs~ithLDwS~Ds~~~~~~S~  511 (626)
T KOG2106|consen  452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-KCSGSPITHLDWSSDSQFLVSNSG  511 (626)
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-eecCceeEEeeecCCCceEEeccC
Confidence            999999999999999655 99999876654321111 123489999999999998876554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.5e-09  Score=121.28  Aligned_cols=170  Identities=15%  Similarity=0.092  Sum_probs=116.6

Q ss_pred             cCCCEEEEEe---CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCC--eEEEEeCCCCeEEEEEecCC
Q 004203           79 DARRGLASWV---EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs---~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSg-S~Dg--tVrVWDl~tg~~l~~l~gH~  149 (768)
                      .+++.|+..+   .+..|.+|++.+++   +....+.+..+.|||||+.|+.. +.++  .|++||+++++..... .+.
T Consensus       208 PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~  286 (429)
T PRK03629        208 PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGR  286 (429)
T ss_pred             CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCC
Confidence            4555555332   23468889987662   33344556678999999988865 3344  6999999988765444 344


Q ss_pred             CCcEEEEEccCCCCEEEEEeCC-C--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSLD-H--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR  222 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~D-g--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d--~I~IWDl~t~  222 (768)
                      ..+....|+| |++.|++.+.+ +  .|+++|+.+++...............|+|||++|++.+.  +  .|++||+.++
T Consensus       287 ~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g  365 (429)
T PRK03629        287 SNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  365 (429)
T ss_pred             CCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            5677889999 88888777654 3  566668887766544444445667899999999988763  2  2899999877


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ....    +.. ........|+|||+.|++++.
T Consensus       366 ~~~~----Lt~-~~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        366 GVQV----LTD-TFLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             CeEE----eCC-CCCCCCceECCCCCEEEEEEc
Confidence            5422    222 223456889999999888775

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=9.6e-10  Score=125.21  Aligned_cols=172  Identities=13%  Similarity=0.144  Sum_probs=139.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE--EEEecCCCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~g~V~  153 (768)
                      .+.+|+|.+-+|+|.-||+.+.+    +....+.|.+++.+|.+..++.|++||.++.++...++..  ..|.-.++.|.
T Consensus        79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL  158 (691)
T KOG2048|consen   79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL  158 (691)
T ss_pred             cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence            78899999999999999998773    4466788999999999999999999998888888877654  34444568899


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-----cC----CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcc
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----DF----YRPIASIAFHASGELLAVASGHKLYIWRYNMREE  224 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-----~h----~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~  224 (768)
                      ++.|+| ++..++.|+.||.|++||+.++......     ..    ..-|.++.|-.|+.++..-|.|.|++||...+..
T Consensus       159 slsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTL  237 (691)
T KOG2048|consen  159 SLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTL  237 (691)
T ss_pred             EEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcch
Confidence            999999 9999999999999999999999876632     11    2235667777676544433467799999999987


Q ss_pred             ccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .+   ....|...|.+++..+++.++++++-
T Consensus       238 iq---S~~~h~adVl~Lav~~~~d~vfsaGv  265 (691)
T KOG2048|consen  238 IQ---SHSCHDADVLALAVADNEDRVFSAGV  265 (691)
T ss_pred             hh---hhhhhhcceeEEEEcCCCCeEEEccC
Confidence            66   45668899999999999988877664

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=4.1e-10  Score=125.42  Aligned_cols=155  Identities=17%  Similarity=0.194  Sum_probs=118.9

Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-ecCCCCcEEEEEccCC-CCEEEEEeCCCeEEEEE
Q 004203          101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWN  178 (768)
Q Consensus       101 ~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~g~V~sVafSP~d-g~lLaSgS~DgtVrLWD  178 (768)
                      .+|.||++.|++++|+.||.+|++||+|-.+.|||.-..+.+..+ .||.+.|.++.|-|.. .+++++|..|+.|+|+|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            368999999999999999999999999999999999888877766 5899999999999854 44788999999999999


Q ss_pred             CCCCcE----------EEEe-cCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCccccC-------CeEeecCCCCe
Q 004203          179 ASTAEC----------IGSR-DFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREETSS-------PRIVLRTRRSL  238 (768)
Q Consensus       179 l~sg~~----------i~~l-~h~~~V~svafSPDG-~~LatgS-dd~I~IWDl~t~~~~~~-------~~~l~~h~~~V  238 (768)
                      +...+.          ...+ .|...|..++-.|++ ..+-+++ ||.|+-+|++.......       ...+....-..
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence            985221          1222 377888999999999 4555666 55599999987543210       00111122456


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004203          239 RAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~s  255 (768)
                      .++..+|...++++.+.
T Consensus       204 k~ltisp~rp~~laVGg  220 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGG  220 (758)
T ss_pred             eeeeecCCCCceEEecC
Confidence            89999999887766555

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.20  E-value=2.5e-10  Score=119.48  Aligned_cols=169  Identities=11%  Similarity=0.160  Sum_probs=133.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEecC---
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVLHGH---  148 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l~gH---  148 (768)
                      +-..|.+.+-|.+..+||++++       +|..|.+.|++++|..++ +.||+.+.||.||+||++..+.-..+...   
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~  241 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP  241 (364)
T ss_pred             CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence            5678889999999999999985       477999999999999855 57899999999999999987655554322   


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCC-eEEEEECCCCc-EEEEe-cCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCc
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDH-EVRLWNASTAE-CIGSR-DFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMRE  223 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~Dg-tVrLWDl~sg~-~i~~l-~h~~~V~svafSPDG~-~LatgSdd~-I~IWDl~t~~  223 (768)
                      ..+...++|+++|.+++|+-..|. .|.|.|++... ++..+ .|...|+.++|.|... .|++++||. +.+||+...-
T Consensus       242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence            346777999999999999866554 79999999753 44444 6999999999999764 888888777 9999997653


Q ss_pred             c--ccCCeEeecCCCCeEEEEEccCCC
Q 004203          224 E--TSSPRIVLRTRRSLRAVHFHPHAA  248 (768)
Q Consensus       224 ~--~~~~~~l~~h~~~V~sVaFSPDG~  248 (768)
                      .  ...|...-.....|+.++|++...
T Consensus       322 ~~~~~dPilay~a~~EVNqi~Ws~~~~  348 (364)
T KOG0290|consen  322 RENGEDPILAYTAGGEVNQIQWSSSQP  348 (364)
T ss_pred             ccCCCCchhhhhccceeeeeeecccCC
Confidence            3  222333344577899999997544

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.20  E-value=4.8e-11  Score=137.65  Aligned_cols=177  Identities=16%  Similarity=0.250  Sum_probs=134.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      ..+.+++++++|..+++|..++.    ...||.+.|+.++.+.+..++++++.|..|++|-+.++..+..+.||++.|++
T Consensus       200 rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavta  279 (1113)
T KOG0644|consen  200 RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTA  279 (1113)
T ss_pred             cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceee
Confidence            46889999999999999998876    57899999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEe---------c--------CCCCeEEEEEcCCC
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAE--------------CIGSR---------D--------FYRPIASIAFHASG  203 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~--------------~i~~l---------~--------h~~~V~svafSPDG  203 (768)
                      ++|+|     ..+.+.||++++||.+-.-              .+..+         .        ....+..++|....
T Consensus       280 iafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~  354 (1113)
T KOG0644|consen  280 IAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL  354 (1113)
T ss_pred             eccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccc
Confidence            99999     3488999999999987110              00000         0        00122234444433


Q ss_pred             CEEEEEE------------CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCC
Q 004203          204 ELLAVAS------------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSE  263 (768)
Q Consensus       204 ~~LatgS------------dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~  263 (768)
                      -.+++.+            +..+.+|++-++....   ...+|...+..+.|||-...+..++.      +||+..+.
T Consensus       355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             eEEEeccccccccceeeeeeeEeeeeecccchhhh---hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence            3333333            2237888888886544   56678899999999998876766544      77776543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.19  E-value=2.6e-10  Score=126.68  Aligned_cols=162  Identities=15%  Similarity=0.201  Sum_probs=127.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF  157 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVaf  157 (768)
                      ...++.++.||.+.+.+-...   ....|.+.|.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|+|++|
T Consensus        75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence            355778889999988876543   4678999999999999999999999999999999 556554555556678999999


Q ss_pred             ccCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCC
Q 004203          158 HPLNPTIIASGSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTR  235 (768)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~sg-~~i~~l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~  235 (768)
                      .| +.+.++.+.. +.+.|--+... +.++...|.+-|.++.|++.+.++++|+.| +.++||.....    .+....|.
T Consensus       154 ~p-~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----Lf~S~~~e  227 (737)
T KOG1524|consen  154 AP-NSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----LFTSAAEE  227 (737)
T ss_pred             CC-CCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc----cccCChhc
Confidence            99 5555555443 35777777654 455666799999999999999999999966 59999976553    33455688


Q ss_pred             CCeEEEEEccCCCe
Q 004203          236 RSLRAVHFHPHAAP  249 (768)
Q Consensus       236 ~~V~sVaFSPDG~~  249 (768)
                      .+|++++|.|+-.+
T Consensus       228 y~ITSva~npd~~~  241 (737)
T KOG1524|consen  228 YAITSVAFNPEKDY  241 (737)
T ss_pred             cceeeeeeccccce
Confidence            99999999999443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=8e-10  Score=125.17  Aligned_cols=169  Identities=15%  Similarity=0.097  Sum_probs=114.3

Q ss_pred             ecCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEe-CCCeE--EEEeCCCCeEEEEEecC
Q 004203           78 RDARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTH-GDHTV--KIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        78 ~d~g~~LvSgs~D---gsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS-~DgtV--rVWDl~tg~~l~~l~gH  148 (768)
                      +.++..|+..+.+   ..|.+||+.+++   +....+....++|+|||++|+.++ .++.+  ++||+.+++. ..+..+
T Consensus       212 SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~  290 (429)
T PRK01742        212 SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSG  290 (429)
T ss_pred             cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccC
Confidence            3456666655433   369999998763   332333445789999999988765 57754  5557776664 455667


Q ss_pred             CCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCC-cEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc
Q 004203          149 RRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETS  226 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~sg-~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~  226 (768)
                      ...+..+.|+| |++.|+.++ .++...||++... .....+.+..  ....|+|||++|++.+.+.+.+||+.++....
T Consensus       291 ~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~  367 (429)
T PRK01742        291 AGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEV  367 (429)
T ss_pred             CCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEE
Confidence            77788899999 787666554 5777788876432 2223333333  45789999999999888788889998875422


Q ss_pred             CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                          +..+ .....+.|+|||++|++++.
T Consensus       368 ----lt~~-~~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        368 ----LSST-FLDESPSISPNGIMIIYSST  391 (429)
T ss_pred             ----ecCC-CCCCCceECCCCCEEEEEEc
Confidence                2111 23456889999998888765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=1.8e-09  Score=122.45  Aligned_cols=170  Identities=15%  Similarity=0.158  Sum_probs=122.4

Q ss_pred             cCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEE-EEeCCC--eEEEEeCCCCeEEEEEecCC
Q 004203           79 DARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDH--TVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs~---DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~La-SgS~Dg--tVrVWDl~tg~~l~~l~gH~  149 (768)
                      .+++.|+..+.   +..|.+||+.+++   +..+.+.+...+|+|||+.|+ +.+.++  .|++||+++++. ..+..+.
T Consensus       211 pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~  289 (435)
T PRK05137        211 PNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSP  289 (435)
T ss_pred             CCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCC
Confidence            45555655442   4579999998763   556777888999999999876 444444  588889988875 4455566


Q ss_pred             CCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR  222 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d--~I~IWDl~t~  222 (768)
                      +......|+| |++.|+..+. ++  .|++||+.+++..........+....|+|||+.|++.+.  +  .|.+||+..+
T Consensus       290 ~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        290 AIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             CccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            6677789999 8888777664 33  699999988776665555566777899999999988763  2  2888887654


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..     ........+..+.|+|||+.|+++..
T Consensus       369 ~~-----~~lt~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        369 GE-----RILTSGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             ce-----EeccCCCCCCCCeECCCCCEEEEEEc
Confidence            32     12222345778899999998887764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=2.9e-10  Score=122.27  Aligned_cols=159  Identities=18%  Similarity=0.202  Sum_probs=132.7

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC------CeEEEEEe-cCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEV  174 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t------g~~l~~l~-gH~g~V~sVafSP~dg~lLaSgS~DgtV  174 (768)
                      .+.+|.+.|+++.||.++++|++|+.|..+++|+++.      .+++.... .|...|.+++|.- ...++++|..+++|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence            4679999999999999999999999999999999853      34454443 3557899999998 88899999999999


Q ss_pred             EEEECCCCcEEEEecCCC---CeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203          175 RLWNASTAECIGSRDFYR---PIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       175 rLWDl~sg~~i~~l~h~~---~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L  250 (768)
                      .+-|+++.+.+..+.|..   .|+.+.-+|..+.|++.++++ |.+||.+.......++....-......+.|+|-...|
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            999999999998887665   899999999988888888766 9999998877544455555557788999999998878


Q ss_pred             EEEEe------eCCcCC
Q 004203          251 LLTAE------VNDLDS  261 (768)
Q Consensus       251 laS~s------vwdl~s  261 (768)
                      +++.+      +||++.
T Consensus       210 i~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRM  226 (609)
T ss_pred             EEeccccCCCCceeecc
Confidence            77665      777763

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=6.4e-09  Score=118.04  Aligned_cols=226  Identities=14%  Similarity=0.168  Sum_probs=135.9

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCE--EE-EEeC--CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCC
Q 004203           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKT--LA-STHG--DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT  163 (768)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~--La-SgS~--DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~  163 (768)
                      .|.+.|.+..   ++......+..-+|||||+.  ++ +...  ...|++.|+.+++..... ...+.....+|+| ||+
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSP-DG~  243 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSP-RKK  243 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECC-CCC
Confidence            4556665543   35556667788999999975  32 3322  346888899888654333 2334455679999 887


Q ss_pred             EEEEEeC-CC----eEEEEECCCC---cEEEEecC-CCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeE
Q 004203          164 IIASGSL-DH----EVRLWNASTA---ECIGSRDF-YRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRI  230 (768)
Q Consensus       164 lLaSgS~-Dg----tVrLWDl~sg---~~i~~l~h-~~~V~svafSPDG~~LatgSd--d~--I~IWDl~t~~~~~~~~~  230 (768)
                      .|+..+. ++    .+.+||+..+   +....... .......+|+|||+.|++.++  +.  |+++++.....  ....
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~  321 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRL  321 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEE
Confidence            7776553 22    3445777653   33334432 234467899999999988874  33  55555543221  1223


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEE
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS  310 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~ps  310 (768)
                      +......+....|||||++|++......    .                ..+.+++...+....+...    ......|.
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g----~----------------~~I~v~dl~~g~~~~Lt~~----~~~~~~p~  377 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKG----V----------------RQICVYDLATGRDYQLTTS----PENKESPS  377 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCC----C----------------cEEEEEECCCCCeEEccCC----CCCccceE
Confidence            4444456778999999999887764211    0                1344444443333222211    11223689


Q ss_pred             EecCCCEEEEEecCCCCCcceEEeccCCCceeeeec
Q 004203          311 FVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLT  346 (768)
Q Consensus       311 FSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~~  346 (768)
                      |+|||+.|++...+.. ...++..++++...++++.
T Consensus       378 wSpDG~~L~f~~~~~g-~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        378 WAIDSLHLVYSAGNSN-ESELYLISLITKKTRKIVI  412 (428)
T ss_pred             ECCCCCEEEEEECCCC-CceEEEEECCCCCEEEeec
Confidence            9999999998755432 3566777777766665553

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.18  E-value=2.2e-10  Score=125.52  Aligned_cols=157  Identities=18%  Similarity=0.181  Sum_probs=126.5

Q ss_pred             CCCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeCCCC----eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203          103 LSPPPRSTIAAAFSPDG--KTLASTHGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (768)
Q Consensus       103 L~gH~~~VtslafSPDG--~~LaSgS~DgtVrVWDl~tg----~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL  176 (768)
                      .+-+.+.|++++|+|..  +++++|..-|+|-+||+.+.    ..+..+..|.++|.++.|+|.+...+++.|.||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            45689999999999943  68889999999999999532    3457778899999999999988999999999999999


Q ss_pred             EECCCCcEEEE--ec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          177 WNASTAECIGS--RD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       177 WDl~sg~~i~~--l~-h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                      -|++.+.....  .. ....+.++.|+.+...++++.+ |...+||+++.+...  ..+.-|...|.+|+++|-..++++
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~--~~~~lh~kKI~sv~~NP~~p~~la  339 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY--ENLRLHKKKITSVALNPVCPWFLA  339 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc--hhhhhhhcccceeecCCCCchhee
Confidence            99987643322  22 3446778889888887777764 569999999987632  345567789999999999999988


Q ss_pred             EEe------eCCcCC
Q 004203          253 TAE------VNDLDS  261 (768)
Q Consensus       253 S~s------vwdl~s  261 (768)
                      +++      +||++.
T Consensus       340 T~s~D~T~kIWD~R~  354 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQ  354 (498)
T ss_pred             ecccCcceeeeehhh
Confidence            876      777764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=7e-10  Score=113.79  Aligned_cols=165  Identities=21%  Similarity=0.230  Sum_probs=125.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC------------CCCCCC-----CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYC------------PLSPPP-----RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK  143 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~------------~L~gH~-----~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~  143 (768)
                      ...|++++. |.|+-|.....            +..-|.     ..|+++-..|..+-++.++.|+.++-||+++|+..+
T Consensus        72 d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r  150 (325)
T KOG0649|consen   72 DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR  150 (325)
T ss_pred             hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence            445555544 88888875422            122233     258999999988888888899999999999999999


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-----------CeEEEEEcCCCCEEEEEECC
Q 004203          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-----------PIASIAFHASGELLAVASGH  212 (768)
Q Consensus       144 ~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~-----------~V~svafSPDG~~LatgSdd  212 (768)
                      .++||++.|.++.--. ....+++|+.||++||||.++++++..++...           .|  .+..-+..+|++|++-
T Consensus       151 ~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp  227 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGP  227 (325)
T ss_pred             EEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCC
Confidence            9999999999988744 45678999999999999999999988865221           23  3444567799998888


Q ss_pred             eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       213 ~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++.+|.++..+...    ++.-...|..+.|-.|  .+++.+.
T Consensus       228 ~lslwhLrsse~t~----vfpipa~v~~v~F~~d--~vl~~G~  264 (325)
T KOG0649|consen  228 KLSLWHLRSSESTC----VFPIPARVHLVDFVDD--CVLIGGE  264 (325)
T ss_pred             ceeEEeccCCCceE----EEecccceeEeeeecc--eEEEecc
Confidence            89999999987644    4445677888889654  3566554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.17  E-value=5.7e-10  Score=116.71  Aligned_cols=147  Identities=16%  Similarity=0.255  Sum_probs=116.5

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE-EEEEe-----cCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEE
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-LKVLH-----GHRRTPWVVRFHP-LNPTIIASGSLDHEVRLW  177 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~-l~~l~-----gH~g~V~sVafSP-~dg~lLaSgS~DgtVrLW  177 (768)
                      .+-+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+.     +++...++-+|+| .+++.+++ ..|++++.|
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEE
Confidence            4666899999999999998776 78999999988765 33332     3566778889999 45666665 458899999


Q ss_pred             ECCCCcEEEEe--cCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          178 NASTAECIGSR--DFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       178 Dl~sg~~i~~l--~h~~~V~svafSPDG~-~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      |+++.++...+  .|...|..+.|+|+-+ +|++++|++ |+|||.++.+.  ....+.+|..+|++|.|+|....|+.+
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccceEEEe
Confidence            99988776665  4778899999999987 556666555 99999998776  345678899999999999988777776


Q ss_pred             Ee
Q 004203          254 AE  255 (768)
Q Consensus       254 ~s  255 (768)
                      ++
T Consensus       277 ~~  278 (370)
T KOG1007|consen  277 GG  278 (370)
T ss_pred             cC
Confidence            64

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=3.2e-09  Score=120.36  Aligned_cols=170  Identities=15%  Similarity=0.099  Sum_probs=118.0

Q ss_pred             cCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEE-EEeCCC--eEEEEeCCCCeEEEEEecCC
Q 004203           79 DARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDH--TVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs~---DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~La-SgS~Dg--tVrVWDl~tg~~l~~l~gH~  149 (768)
                      .++..|+..+.   ...|.+||+.+++   +..+.+...+++|+|||+.|+ +.+.++  .|++||+.+++. ..+..+.
T Consensus       213 pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~  291 (433)
T PRK04922        213 PDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHF  291 (433)
T ss_pred             CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCC
Confidence            34555665543   3468999987663   444555566899999999876 444444  699999998875 4455555


Q ss_pred             CCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-C---eEEEEEcCCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIWRYNMR  222 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d---~I~IWDl~t~  222 (768)
                      .....++|+| |++.|++++. ++  .|+++|+.+++..............+|+|||++|+..+. +   .|.+||+.++
T Consensus       292 ~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        292 GIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             CCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence            5566789999 8887777664 44  488888888776554433344557899999999988763 2   2999999776


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +...    + .+........|+|||++++++..
T Consensus       371 ~~~~----L-t~~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        371 SVRT----L-TPGSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             CeEE----C-CCCCCCCCceECCCCCEEEEEEe
Confidence            5421    2 23234557799999998887765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=1.5e-08  Score=114.88  Aligned_cols=211  Identities=10%  Similarity=0.051  Sum_probs=136.7

Q ss_pred             CCeEEEEECCCCCE-EEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEE-EeCC--CeEEEEECC
Q 004203          108 RSTIAAAFSPDGKT-LASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS-GSLD--HEVRLWNAS  180 (768)
Q Consensus       108 ~~VtslafSPDG~~-LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaS-gS~D--gtVrLWDl~  180 (768)
                      +.+....|+|||+. ++..+.   +..|+++|+.+++...... ..+......|+| |++.++. .+.+  ..|+++|+.
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence            37789999999985 665444   3579999999987655543 445566678999 7765554 4434  479999998


Q ss_pred             CCcEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEee
Q 004203          181 TAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEV  256 (768)
Q Consensus       181 sg~~i~~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~sv  256 (768)
                      +++...............|+|||+.|+..++.    .|+++|+.+++...    +.....  ....|||||++++.+...
T Consensus       266 ~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r----lt~~g~--~~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        266 TKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ----VVFHGK--NNSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             CCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe----CccCCC--cCceECCCCCEEEEEEcC
Confidence            88766554444434456899999999998853    28999998776533    111111  124899999999888753


Q ss_pred             CCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEecc
Q 004203          257 NDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSL  336 (768)
Q Consensus       257 wdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~  336 (768)
                      .+-....         +     ...+.+.+...+....|....     ..-.|.|||||+.|++.... .-.+.+...++
T Consensus       340 ~~~~~~~---------~-----~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l  399 (419)
T PRK04043        340 TNNEFGK---------N-----TFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL-GNQSALGIIRL  399 (419)
T ss_pred             CCcccCC---------C-----CcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc-CCcEEEEEEec
Confidence            2211000         0     123455554444332222210     11259999999999998654 33346788888


Q ss_pred             CCCceeeeec
Q 004203          337 RSSSSVRLLT  346 (768)
Q Consensus       337 ~ss~~~rl~~  346 (768)
                      ++....+|+.
T Consensus       400 ~g~~~~~l~~  409 (419)
T PRK04043        400 NYNKSFLFPL  409 (419)
T ss_pred             CCCeeEEeec
Confidence            8877776764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.17  E-value=2.9e-10  Score=129.50  Aligned_cols=188  Identities=20%  Similarity=0.327  Sum_probs=135.4

Q ss_pred             ecCCcceeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCC
Q 004203           58 LLGETARKCSGSFSQIFEAGRDARRGLASWVEAE-----SLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGD  128 (768)
Q Consensus        58 ~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~Dg-----sIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~D  128 (768)
                      +|...-..+..-+.....+.+..+..+++.....     .|++|+..+-    .+.+|.-.|+-++|||||++|++.+.|
T Consensus       514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD  593 (764)
T KOG1063|consen  514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD  593 (764)
T ss_pred             cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence            3443333333333334455556677777776544     4899998754    589999999999999999999999999


Q ss_pred             CeEEEEeCCCCe----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC--cEEEE---ecCCCCeEEEEE
Q 004203          129 HTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGS---RDFYRPIASIAF  199 (768)
Q Consensus       129 gtVrVWDl~tg~----~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg--~~i~~---l~h~~~V~svaf  199 (768)
                      .++.+|......    ....++.|+.-|++..|+| ++.+++++|+|++|++|.....  +.+..   .++...|+.++|
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~  672 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY  672 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence            999999875432    1234688999999999999 9999999999999999999887  44333   467889999999


Q ss_pred             cCC-----CCEEEEEE-CCeEEEEEcCCCcccc---------CCeEeecCCCCeEEEEEccC
Q 004203          200 HAS-----GELLAVAS-GHKLYIWRYNMREETS---------SPRIVLRTRRSLRAVHFHPH  246 (768)
Q Consensus       200 SPD-----G~~LatgS-dd~I~IWDl~t~~~~~---------~~~~l~~h~~~V~sVaFSPD  246 (768)
                      .|-     +..+++|- .|.|.+|.........         .......+...|+.+.|.|.
T Consensus       673 ~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~  734 (764)
T KOG1063|consen  673 LPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT  734 (764)
T ss_pred             eccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence            872     22556666 4669999865221100         00112234577899999986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.16  E-value=8.7e-09  Score=107.74  Aligned_cols=175  Identities=27%  Similarity=0.410  Sum_probs=134.7

Q ss_pred             EEecCCCEEEEEeC-CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEE-EEecC
Q 004203           76 AGRDARRGLASWVE-AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLK-VLHGH  148 (768)
Q Consensus        76 a~~d~g~~LvSgs~-DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~-~l~gH  148 (768)
                      .....+..++.+.. |+.+++|+....    .+.+|...|.+++|+|++. .+++++.|+.|++||...+.... .+.+|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~  241 (466)
T COG2319         162 AFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH  241 (466)
T ss_pred             EECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence            33445557777775 999999999863    4677999999999999998 55666999999999999888887 68888


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~  225 (768)
                      ...+ ...|+| ++.++++++.|+.+++||+..... ...+ .|...+.++.|+|++..+++++.+. +.+||..+....
T Consensus       242 ~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  319 (466)
T COG2319         242 SDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL  319 (466)
T ss_pred             Ccce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence            8875 448999 668888999999999999997664 4443 6788999999999888888866445 999988877653


Q ss_pred             cCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ... ....|...+..+.|.+++..++.+
T Consensus       320 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         320 SSL-TLKGHEGPVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             EEe-eecccCCceEEEEECCCCCEEEEe
Confidence            311 123566679999994332444444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.15  E-value=5.7e-10  Score=118.17  Aligned_cols=180  Identities=16%  Similarity=0.240  Sum_probs=133.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCCC------CCC---CeEEEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEE--EE-
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPLSP------PPR---STIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCLK--VL-  145 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L~g------H~~---~VtslafSPDG~~LaSgS~DgtVrVWDl-~tg~~l~--~l-  145 (768)
                      .....+++.+.+..|++||+.+++++.      |-.   ...+++|+|||.+|+.| ....|++||+ +.|....  .. 
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence            355667777889999999999987653      333   35799999999999854 6679999998 5554221  11 


Q ss_pred             ----ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE--CCeEEEEE
Q 004203          146 ----HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS--GHKLYIWR  218 (768)
Q Consensus       146 ----~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS--dd~I~IWD  218 (768)
                          .+..+-+.+++|+|.+.+.++.|+.-..+-||.-..+.+...+ +|.+.|+-+.|++||+.|.+|+  +++|..||
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence                1335678899999988889999999999888888887777765 6999999999999999999998  57799999


Q ss_pred             cCCCccccCCeEeecCCC-CeEE--EEEccCCCeEEEEE-----eeCCcCC
Q 004203          219 YNMREETSSPRIVLRTRR-SLRA--VHFHPHAAPLLLTA-----EVNDLDS  261 (768)
Q Consensus       219 l~t~~~~~~~~~l~~h~~-~V~s--VaFSPDG~~LlaS~-----svwdl~s  261 (768)
                      ++.....  ...+..|.. .-..  ....|+|++|+++.     .+||++.
T Consensus       280 iR~~~~p--v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  280 IRYSRDP--VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             ehhccch--hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            9987652  223334433 2223  34568888666542     2777664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.15  E-value=2.8e-10  Score=128.64  Aligned_cols=138  Identities=23%  Similarity=0.366  Sum_probs=117.4

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l  188 (768)
                      .|+.++|-|||..|+.+.+| .+.+||...|..+.++++|...|++++|+. ||+.++||+.|+.|.+|.-+- +-+...
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~kl-EG~LkY   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKL-EGILKY   90 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccc-cceeee
Confidence            89999999999999887765 799999999999999999999999999999 999999999999999998542 233446


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       189 ~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      .|.+.|.|+.|+|-...|++++=...-+|.........     ......+.+.+|..||++++.+-
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-----~kss~R~~~CsWtnDGqylalG~  151 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-----HKSSSRIICCSWTNDGQYLALGM  151 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-----hhhheeEEEeeecCCCcEEEEec
Confidence            79999999999999999999998888889876554321     22345788999999999887764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.14  E-value=1.9e-10  Score=130.94  Aligned_cols=144  Identities=21%  Similarity=0.220  Sum_probs=120.1

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL  176 (768)
                      +|.||...|++++.||+|+++|+++.     ...|++|+..+...+..+.+|.-.|+.++||| |+++|+++++|.++.|
T Consensus       520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl  598 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSL  598 (764)
T ss_pred             HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEe
Confidence            46799999999999999999999976     34699999999988889999999999999999 9999999999999999


Q ss_pred             EECCCCcEEE-----EecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC-CeEeecCCCCeEEEEEccC
Q 004203          177 WNASTAECIG-----SRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS-PRIVLRTRRSLRAVHFHPH  246 (768)
Q Consensus       177 WDl~sg~~i~-----~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~-~~~l~~h~~~V~sVaFSPD  246 (768)
                      |.........     .-.|..-|.++.|+|++++++++|.|+ |++|.......... .+....+...|++++|.|-
T Consensus       599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~  675 (764)
T KOG1063|consen  599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPV  675 (764)
T ss_pred             eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecc
Confidence            9986433211     234788899999999999999999766 99999877632111 2245667889999999873

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.14  E-value=7.1e-10  Score=123.27  Aligned_cols=160  Identities=16%  Similarity=0.167  Sum_probs=129.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      .++..|++.++||.|++|.-...   ++.....+|.|++|.|+...++.+-.+ .+.|=-+.-...+-..+.|.+-|.++
T Consensus       114 ~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHDGiiL~~  192 (737)
T KOG1524|consen  114 PDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHDGLVLSL  192 (737)
T ss_pred             CCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeecccccceeEEeccCcEEEEe
Confidence            47888999999999999997543   566778899999999987766655443 56666666566677789999999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCC
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR  235 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~  235 (768)
                      .|++ ..+++++|+.|-..++||-........-.|+.+|++++|+|| +.++.++.+.+++=              ....
T Consensus       193 ~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~--------------~p~~  256 (737)
T KOG1524|consen  193 SWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFS--------------SPRV  256 (737)
T ss_pred             ecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeeeeeec--------------CCCc
Confidence            9999 999999999999999999876555555678999999999999 88888887777711              1134


Q ss_pred             CCeEEEEEccCCCeEEEEEe
Q 004203          236 RSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       236 ~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +.|..++||+||..+..+++
T Consensus       257 GSifnlsWS~DGTQ~a~gt~  276 (737)
T KOG1524|consen  257 GSIFNLSWSADGTQATCGTS  276 (737)
T ss_pred             cceEEEEEcCCCceeecccc
Confidence            67899999999998776554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=1.1e-10  Score=138.96  Aligned_cols=173  Identities=18%  Similarity=0.185  Sum_probs=137.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC------CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC--
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPLS------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR--  150 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L~------gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g--  150 (768)
                      .+..|++|+.||.|.+||+..-+..      ...+.|.+++|+. ....|++++.+|.+.|||++..+.+..+..+.+  
T Consensus       128 q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~  207 (1049)
T KOG0307|consen  128 QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM  207 (1049)
T ss_pred             CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence            4558999999999999999864221      2456799999998 556789999999999999999888877776655  


Q ss_pred             CcEEEEEccCCCCEEEEEeCCC---eEEEEECCCC-cEEEEe-cCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCc
Q 004203          151 TPWVVRFHPLNPTIIASGSLDH---EVRLWNASTA-ECIGSR-DFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMRE  223 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~Dg---tVrLWDl~sg-~~i~~l-~h~~~V~svafSPDG-~~LatgS-dd~I~IWDl~t~~  223 (768)
                      .+..+.|||++...++.++.|.   .|.+||++.- .+++++ .|...|.++.|++.+ .+|++++ |++|.+|+..+++
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE  287 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE  287 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence            3668999998888888887765   7999999863 455665 689999999999977 5666666 5569999999988


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...   .+.....++..+.|+|....+++.+.
T Consensus       288 vl~---~~p~~~nW~fdv~w~pr~P~~~A~as  316 (1049)
T KOG0307|consen  288 VLG---ELPAQGNWCFDVQWCPRNPSVMAAAS  316 (1049)
T ss_pred             Eee---ecCCCCcceeeeeecCCCcchhhhhe
Confidence            655   45556789999999998876665554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.13  E-value=1.8e-09  Score=114.45  Aligned_cols=148  Identities=17%  Similarity=0.266  Sum_probs=120.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-
Q 004203          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-  181 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s-  181 (768)
                      -.++|+|.+|++|+..+|.+-+...|.||.....   +...+++.|...|+.|+|+| ..+.|++++.|..-++|.... 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence            3568999999999999999999999999987654   46789999999999999999 899999999999999999944 


Q ss_pred             CcE---EEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCC-eEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          182 AEC---IGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSP-RIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       182 g~~---i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~-~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ++-   +..+.++...+++.|+|.++.++++++.+ |.||-+.....-... .....++..|.++.|+|++-.+++++
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            332   23356899999999999999999999776 889888766542200 11223467899999999998665554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=6.6e-09  Score=117.71  Aligned_cols=170  Identities=21%  Similarity=0.135  Sum_probs=113.2

Q ss_pred             cCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEE-EeCCCeEEEE--eCCCCeEEEEEecCC
Q 004203           79 DARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDHTVKII--DCQTGSCLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs~---DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaS-gS~DgtVrVW--Dl~tg~~l~~l~gH~  149 (768)
                      .+++.|+..+.   ...|.+||+.+++   +....+.+...+|+|||+.|+. .+.++...||  |+.+++ ...+..+.
T Consensus       205 PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~  283 (427)
T PRK02889        205 PDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS  283 (427)
T ss_pred             CCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC
Confidence            45556655443   2359999998763   4445566778999999998874 5667765555  565555 45555555


Q ss_pred             CCcEEEEEccCCCCEEEEEeC-CCeEEEE--ECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-C---eEEEEEcCCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSL-DHEVRLW--NASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIWRYNMR  222 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~-DgtVrLW--Dl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d---~I~IWDl~t~  222 (768)
                      +......|+| |++.|+..+. ++...||  |+.+++..............+|+|||++|+..+. +   .|++||+.++
T Consensus       284 ~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        284 GIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            5566789999 8887776654 4544555  5556654443333334456889999999988773 2   3999999877


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +...    +.. ......+.|+|||+.|+++..
T Consensus       363 ~~~~----lt~-~~~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        363 QVTA----LTD-TTRDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             CeEE----ccC-CCCccCceECCCCCEEEEEEe
Confidence            5422    222 233467899999999988775

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.10  E-value=1.1e-08  Score=116.05  Aligned_cols=204  Identities=18%  Similarity=0.191  Sum_probs=136.7

Q ss_pred             CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEcc------
Q 004203           90 AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP------  159 (768)
Q Consensus        90 DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP------  159 (768)
                      +..+.++|...+    ++++|++.|++++|+.||+.|++|+.|..|.+|+-+-.-.+ .+ .|+..|.|+.|+|      
T Consensus        32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~La  109 (1081)
T KOG1538|consen   32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLA  109 (1081)
T ss_pred             CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhh
Confidence            567888998866    68999999999999999999999999999999985432111 11 3555555555544      


Q ss_pred             --------------------------------CCCCEEEEEeCCCeEEEEECCCCcEEEEe----cCCCCeEEEEEcCCC
Q 004203          160 --------------------------------LNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASG  203 (768)
Q Consensus       160 --------------------------------~dg~lLaSgS~DgtVrLWDl~sg~~i~~l----~h~~~V~svafSPDG  203 (768)
                                                      +||.+++-|-.||+|.|-+-. +++...+    +.+.+|.+++|+|..
T Consensus       110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             hcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCC
Confidence                                            288999999999999988654 4433333    256799999999964


Q ss_pred             C-----EEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccC
Q 004203          204 E-----LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRY  277 (768)
Q Consensus       204 ~-----~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~  277 (768)
                      .     .+++..-+. +.++.+.......    ...-.-...++++.++|.+++.+++...+.       +.+-.|.   
T Consensus       189 g~G~~di~aV~DW~qTLSFy~LsG~~Igk----~r~L~FdP~CisYf~NGEy~LiGGsdk~L~-------~fTR~Gv---  254 (1081)
T KOG1538|consen  189 GEGRNDILAVADWGQTLSFYQLSGKQIGK----DRALNFDPCCISYFTNGEYILLGGSDKQLS-------LFTRDGV---  254 (1081)
T ss_pred             CCCccceEEEEeccceeEEEEecceeecc----cccCCCCchhheeccCCcEEEEccCCCceE-------EEeecCe---
Confidence            3     566655443 7777665432211    111234567899999999999988755443       1111111   


Q ss_pred             CCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCC
Q 004203          278 PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDS  327 (768)
Q Consensus       278 p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~  327 (768)
                           .+           -+ .......+|.+...|+++.++++..|.+.
T Consensus       255 -----rL-----------GT-vg~~D~WIWtV~~~PNsQ~v~~GCqDGTi  287 (1081)
T KOG1538|consen  255 -----RL-----------GT-VGEQDSWIWTVQAKPNSQYVVVGCQDGTI  287 (1081)
T ss_pred             -----EE-----------ee-ccccceeEEEEEEccCCceEEEEEccCee
Confidence                 11           10 11133457789999999999998666543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.09  E-value=2e-08  Score=109.08  Aligned_cols=181  Identities=15%  Similarity=0.128  Sum_probs=118.1

Q ss_pred             EEEEecCCCEEEEEe-CCCeEEEEeCCCC-CC------CCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEE
Q 004203           74 FEAGRDARRGLASWV-EAESLHHLRPKYC-PL------SPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKV  144 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs-~DgsIrlWd~~t~-~L------~gH~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~  144 (768)
                      ..+...+++.+++.. .++.|.+|++... .+      ..+.....+++|+|||+++++++ .++.|.+||+++...+..
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            344445666666554 4888999998632 11      12334578899999999986555 579999999977332211


Q ss_pred             -----Ee-cCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEECCC--CcE--EEEec-C------CCCeEEEEEcCCCCEE
Q 004203          145 -----LH-GHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNAST--AEC--IGSRD-F------YRPIASIAFHASGELL  206 (768)
Q Consensus       145 -----l~-gH~g~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~s--g~~--i~~l~-h------~~~V~svafSPDG~~L  206 (768)
                           +. ......+.+.|+| ++++++++.. +++|.+||++.  ++.  +..+. .      ......+.|+|+|++|
T Consensus       164 ~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        164 QEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL  242 (330)
T ss_pred             cCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence                 11 1234467899999 8888877765 89999999973  332  22221 1      1123358899999999


Q ss_pred             EEEEC--CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          207 AVASG--HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       207 atgSd--d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +++..  +.|.+|+++..................+.+.|+|||++|+++..
T Consensus       243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence            99863  45999999665421111111112345678999999998888764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=1.7e-09  Score=115.32  Aligned_cols=153  Identities=16%  Similarity=0.230  Sum_probs=123.1

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCC-CCeEEEEECCCCCEEEEEeC----CCeEEEEeCCCCe
Q 004203           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPP-RSTIAAAFSPDGKTLASTHG----DHTVKIIDCQTGS  140 (768)
Q Consensus        72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~-~~VtslafSPDG~~LaSgS~----DgtVrVWDl~tg~  140 (768)
                      .+.+...+....+.+++.||.|++||++..      ....|. .+..+++.+..++.+++|..    |-.|.+||++..+
T Consensus        75 ~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q  154 (376)
T KOG1188|consen   75 GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ  154 (376)
T ss_pred             ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc
Confidence            455666668889999999999999999865      244565 56788888878889988865    7889999998876


Q ss_pred             E-EEE-EecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE----EEEecCCCCeEEEEEcCCC--CEEEEEECC
Q 004203          141 C-LKV-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC----IGSRDFYRPIASIAFHASG--ELLAVASGH  212 (768)
Q Consensus       141 ~-l~~-l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~----i~~l~h~~~V~svafSPDG--~~LatgSdd  212 (768)
                      . +.. +..|...|++++|+|.+.++|++||.||-|.|||++....    ..++.+...|.++.|..++  ++....-.+
T Consensus       155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~E  234 (376)
T KOG1188|consen  155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHME  234 (376)
T ss_pred             chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccC
Confidence            5 443 4679999999999999999999999999999999986532    3446678889999999988  544444467


Q ss_pred             eEEEEEcCCCcc
Q 004203          213 KLYIWRYNMREE  224 (768)
Q Consensus       213 ~I~IWDl~t~~~  224 (768)
                      +..+|++..+..
T Consensus       235 tf~~~ele~~~~  246 (376)
T KOG1188|consen  235 TFAIYELEDGSE  246 (376)
T ss_pred             ceeEEEccCCCh
Confidence            799999987764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=4.5e-09  Score=113.33  Aligned_cols=176  Identities=14%  Similarity=0.090  Sum_probs=132.9

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC---------CCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC---------PLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~---------~L~--gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (768)
                      .+..++.|++|+.|..+++|+.+.-         .++  .|...|.|++|....+++++|..+++|.+.|+++.+.+..+
T Consensus        64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~  143 (609)
T KOG4227|consen   64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA  143 (609)
T ss_pred             eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee
Confidence            3456999999999999999998632         133  45678999999999999999999999999999999888777


Q ss_pred             ec--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-E---EEEecCCCCeEEEEEcCCCC-EEEEEE-CCeEEEE
Q 004203          146 HG--HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-C---IGSRDFYRPIASIAFHASGE-LLAVAS-GHKLYIW  217 (768)
Q Consensus       146 ~g--H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~-~---i~~l~h~~~V~svafSPDG~-~LatgS-dd~I~IW  217 (768)
                      ..  ..+.|+.+..+| ..+.|++.+.++.|.+||.+... .   +...........+-|+|... +|++.+ .+++.+|
T Consensus       144 ~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~  222 (609)
T KOG4227|consen  144 NENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVF  222 (609)
T ss_pred             cccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence            42  235899999999 78899999999999999998754 2   22223556788899999776 455555 4569999


Q ss_pred             EcCCCccccCCe----EeecCCCCeEEEEEccCCCeEEEE
Q 004203          218 RYNMREETSSPR----IVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       218 Dl~t~~~~~~~~----~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      |.+.........    .+......-.++.|+|+|..+++-
T Consensus       223 D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  223 DRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             eeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence            998875421000    011112234678899999987654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.07  E-value=3.9e-09  Score=110.58  Aligned_cols=164  Identities=21%  Similarity=0.314  Sum_probs=125.5

Q ss_pred             eCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCC-------CeEEEEeCCCC---------eEEE
Q 004203           88 VEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGD-------HTVKIIDCQTG---------SCLK  143 (768)
Q Consensus        88 s~DgsIrlWd~~t~-------~L~gH~~~VtslafSP-DG~~LaSgS~D-------gtVrVWDl~tg---------~~l~  143 (768)
                      .+|..|.+.+.+..       .|.-|.+.|..++-+| |.+.|+++-+|       ..+.||.+...         +++.
T Consensus        37 K~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~  116 (370)
T KOG1007|consen   37 KEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA  116 (370)
T ss_pred             CCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence            46778888777644       3667889999999999 66777776552       35789987542         2333


Q ss_pred             EEe-cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe------cCCCCeEEEEEcC--CCCEEEEEECCe
Q 004203          144 VLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR------DFYRPIASIAFHA--SGELLAVASGHK  213 (768)
Q Consensus       144 ~l~-gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l------~h~~~V~svafSP--DG~~LatgSdd~  213 (768)
                      .+. .+-+.|.|+.|.| +++.+++-. |..|.+|++..+.. +..+      .+....++-+|+|  ||..+++.++.+
T Consensus       117 ~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t  194 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST  194 (370)
T ss_pred             cCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCc
Confidence            443 4456899999999 888888866 77899999997765 3332      2456778889998  889999999999


Q ss_pred             EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       214 I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++.||+++.....  .....|...|+.+.|+|+-++++++++
T Consensus       195 l~~~D~RT~~~~~--sI~dAHgq~vrdlDfNpnkq~~lvt~g  234 (370)
T KOG1007|consen  195 LQFWDLRTMKKNN--SIEDAHGQRVRDLDFNPNKQHILVTCG  234 (370)
T ss_pred             EEEEEccchhhhc--chhhhhcceeeeccCCCCceEEEEEcC
Confidence            9999999887643  233457889999999999999998886

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=1.7e-09  Score=121.70  Aligned_cols=105  Identities=19%  Similarity=0.254  Sum_probs=82.9

Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCC---CeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLD---HEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMR  222 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~D---gtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~  222 (768)
                      .|...|..+.||. .|++|++...+   ..|.|.++.....+.-| ...+.+.++.|+|...+|++++...|+|||+..+
T Consensus       519 ~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq  597 (733)
T KOG0650|consen  519 KHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ  597 (733)
T ss_pred             ecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH
Confidence            4566677777777 77777776554   36777777766655545 3567889999999999999999999999999887


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..+.   .+.....+|.+++.+|.|..|++++.
T Consensus       598 elvK---kL~tg~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  598 ELVK---KLLTGSKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             HHHH---HHhcCCeeeeeeeecCCCCeEEEecC
Confidence            6654   55667789999999999999998876

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.4e-09  Score=118.57  Aligned_cols=147  Identities=18%  Similarity=0.224  Sum_probs=113.6

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-
Q 004203          111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-  189 (768)
Q Consensus       111 tslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-  189 (768)
                      ..++|+.||..|++++.||++|||+..+...+..+..|.+.|.++.|+| |+++|++.+.| ..+|||+++|.++.... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999999999999999888888888888999999999999 99999999999 89999999997766543 


Q ss_pred             --CCCCeEEEEEcCCC---CEEEEEE--C-CeEEEEEcCCCcccc--CCeEeecCCCCeEEEEEccCCCeEEEEEeeCCc
Q 004203          190 --FYRPIASIAFHASG---ELLAVAS--G-HKLYIWRYNMREETS--SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDL  259 (768)
Q Consensus       190 --h~~~V~svafSPDG---~~LatgS--d-d~I~IWDl~t~~~~~--~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl  259 (768)
                        .+..+..+.|+.|+   .+++.+.  . ++|+.||+.......  .........+.|.+++.++||++++.++...++
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence              34467788898877   4444443  2 337777765443311  112223335689999999999988887764433

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.04  E-value=5.7e-09  Score=110.73  Aligned_cols=175  Identities=17%  Similarity=0.178  Sum_probs=132.2

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCC-CC------CC-----CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPK-YC------PL-----SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC  141 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~-t~------~L-----~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~  141 (768)
                      .....++..|+.| ....|+++|.. .+      ..     .+..+-|.+++|+| +.+.++.++....+-||.-..+.+
T Consensus       164 L~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p  242 (406)
T KOG2919|consen  164 LQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP  242 (406)
T ss_pred             EEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc
Confidence            3345677777766 45689999994 22      11     23467799999999 677999999999999999888899


Q ss_pred             EEEEecCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEECCCC-cEEEEec-CCC---CeEEEEEcCCCCEEEEEE-CCeE
Q 004203          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTA-ECIGSRD-FYR---PIASIAFHASGELLAVAS-GHKL  214 (768)
Q Consensus       142 l~~l~gH~g~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~sg-~~i~~l~-h~~---~V~svafSPDG~~LatgS-dd~I  214 (768)
                      +..+-+|++.|+.++|++ +|+.|++|++ |-.|-.||++.. .++..+. |.+   .---+...|++++|++|+ +|.|
T Consensus       243 l~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V  321 (406)
T KOG2919|consen  243 LQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSV  321 (406)
T ss_pred             eeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccE
Confidence            999999999999999999 8888888876 668999999864 3333332 222   222356678999999996 5569


Q ss_pred             EEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       215 ~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ++||+++...  .+.....+...++.++++|--. |++++
T Consensus       322 ~vwdlk~~gn--~~sv~~~~sd~vNgvslnP~mp-ilats  358 (406)
T KOG2919|consen  322 RVWDLKDLGN--EVSVTGNYSDTVNGVSLNPIMP-ILATS  358 (406)
T ss_pred             EEEecCCCCC--cccccccccccccceecCcccc-eeeec
Confidence            9999988443  2335566788999999999855 44444

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=6.8e-09  Score=111.47  Aligned_cols=142  Identities=18%  Similarity=0.337  Sum_probs=109.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec-CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC----
Q 004203          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA----  182 (768)
Q Consensus       108 ~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg----  182 (768)
                      ..+..++|++.-..|+++..|-.|++||-.. ++...++. ....|.+++|-|.....|+.|++.| |.||.....    
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence            3578899999777789999999999999766 55555543 3467999999998888888888876 889977531    


Q ss_pred             cE--------EEEec--CCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203          183 EC--------IGSRD--FYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       183 ~~--------i~~l~--h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L  250 (768)
                      ..        ...+.  .+.+|+++.|.+||..|++++-+.  |.|||.+++....   ........+.-+.|||||.++
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p---L~~~glgg~slLkwSPdgd~l  253 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP---LIPKGLGGFSLLKWSPDGDVL  253 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc---ccccCCCceeeEEEcCCCCEE
Confidence            11        11122  235899999999999999999443  9999999998754   223456788999999999988


Q ss_pred             EEEE
Q 004203          251 LLTA  254 (768)
Q Consensus       251 laS~  254 (768)
                      +++.
T Consensus       254 faAt  257 (445)
T KOG2139|consen  254 FAAT  257 (445)
T ss_pred             EEec
Confidence            7765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=1.7e-08  Score=108.50  Aligned_cols=149  Identities=13%  Similarity=0.182  Sum_probs=112.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CC
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TA  182 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-sg  182 (768)
                      +| ..|+++.|++||..+++++. |..|.|||.+++..+.....-.+.+.-+.||| |+++|+.+.-|+..++|+.. +.
T Consensus       194 gh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~w  271 (445)
T KOG2139|consen  194 GH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSW  271 (445)
T ss_pred             CC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccc
Confidence            44 67999999999999999987 77899999999987766633455688899999 99999999999999999554 44


Q ss_pred             cEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccC--------CeEe---------ecC----CCCeEEE
Q 004203          183 ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS--------PRIV---------LRT----RRSLRAV  241 (768)
Q Consensus       183 ~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~--------~~~l---------~~h----~~~V~sV  241 (768)
                      ...+..-..+.|...+|+|+|++|.....+.-++|.+........        ...+         ...    .+.+.++
T Consensus       272 t~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~l  351 (445)
T KOG2139|consen  272 TKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCL  351 (445)
T ss_pred             eecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcccee
Confidence            444444456699999999999999888877755565533221100        0000         011    3578999


Q ss_pred             EEccCCCeEEEEEe
Q 004203          242 HFHPHAAPLLLTAE  255 (768)
Q Consensus       242 aFSPDG~~LlaS~s  255 (768)
                      +|.|.|.++++.-.
T Consensus       352 awDpsGeyLav~fK  365 (445)
T KOG2139|consen  352 AWDPSGEYLAVIFK  365 (445)
T ss_pred             eECCCCCEEEEEEc
Confidence            99999999988765

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=1.9e-08  Score=106.36  Aligned_cols=196  Identities=21%  Similarity=0.261  Sum_probs=130.8

Q ss_pred             CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC----CeEEEEEecCCCCcEEEEE-ccCCCCEEEEEeCCCeEEEEE
Q 004203          104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT----GSCLKVLHGHRRTPWVVRF-HPLNPTIIASGSLDHEVRLWN  178 (768)
Q Consensus       104 ~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t----g~~l~~l~gH~g~V~sVaf-SP~dg~lLaSgS~DgtVrLWD  178 (768)
                      .+|.+-|+++.|.+-|+.+|+|+.|++|+|||.+.    ..+....+.|.+.|+.|.| +|.-|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            47899999999999999999999999999999643    3567788999999999999 466789999999999999997


Q ss_pred             CCCC--c-----EE--EE-ecCCCCeEEEEEcCC--CCEEEEEEC-CeEEEEEcCCCccccC----------CeEeecCC
Q 004203          179 ASTA--E-----CI--GS-RDFYRPIASIAFHAS--GELLAVASG-HKLYIWRYNMREETSS----------PRIVLRTR  235 (768)
Q Consensus       179 l~sg--~-----~i--~~-l~h~~~V~svafSPD--G~~LatgSd-d~I~IWDl~t~~~~~~----------~~~l~~h~  235 (768)
                      -...  +     -+  .+ ....+.|+.+.|.|.  |-.|++++. |.++||+.-.......          +.....+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            6311  1     11  11 246779999999995  557888774 5599998765432110          00111245


Q ss_pred             CCeEEEEEccCC---CeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCC-CCCCCCcccccCCCCCCceEEEE
Q 004203          236 RSLRAVHFHPHA---APLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAH-SSSHPGLAEEVPLITPPFLRPSF  311 (768)
Q Consensus       236 ~~V~sVaFSPDG---~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~-s~d~~~L~~~~~~~slpil~psF  311 (768)
                      ....+|.|+|..   .+|++++.. +-..-                 ..+.++..+ .+..-......++..-|+...+|
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e-~a~~~-----------------~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w  231 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDE-DAPHL-----------------NKVKIYEYNENGRKWLKVAELPDHTDPIRDISW  231 (361)
T ss_pred             CcceEEeeccccccCceEEEEccc-CCccc-----------------cceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence            667888898743   333333322 22111                 112222211 12123333445567778888888


Q ss_pred             ecCCCE
Q 004203          312 VRDDER  317 (768)
Q Consensus       312 SpDG~r  317 (768)
                      +|.-.+
T Consensus       232 APn~Gr  237 (361)
T KOG2445|consen  232 APNIGR  237 (361)
T ss_pred             ccccCC
Confidence            888543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=2.9e-08  Score=112.70  Aligned_cols=159  Identities=15%  Similarity=0.137  Sum_probs=103.3

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCC---eEEEEEecCCCCcEEEEEccC
Q 004203           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPL  160 (768)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~-----DgtVrVWDl~tg---~~l~~l~gH~g~V~sVafSP~  160 (768)
                      .|.+.++..+   ++....+.....+|||||++|+..+.     |-.+.+||+.++   +......++.+.....+|+| 
T Consensus       212 ~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-  290 (428)
T PRK01029        212 KIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-  290 (428)
T ss_pred             eEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-
Confidence            4666666655   34445556677899999999887653     323444777653   33344433334446689999 


Q ss_pred             CCCEEEEEe-CCCe--EEEEECCC--CcEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEe
Q 004203          161 NPTIIASGS-LDHE--VRLWNAST--AECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIV  231 (768)
Q Consensus       161 dg~lLaSgS-~Dgt--VrLWDl~s--g~~i~~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~~~~~~~~~l  231 (768)
                      ||+.|+..+ .++.  |+++++..  ++..........+....|+|||+.|++.+..    .|++||+.+++...    +
T Consensus       291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----L  366 (428)
T PRK01029        291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----L  366 (428)
T ss_pred             CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----c
Confidence            888777665 4664  55555542  2233233344567789999999999887632    39999998876432    3


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe
Q 004203          232 LRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ......+....|+|||+.|++++.
T Consensus       367 t~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        367 TTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             cCCCCCccceEECCCCCEEEEEEC
Confidence            333446778999999998887654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=5.7e-08  Score=109.67  Aligned_cols=170  Identities=12%  Similarity=0.013  Sum_probs=114.3

Q ss_pred             cCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEE-EeCCC--eEEEEeCCCCeEEEEEecCC
Q 004203           79 DARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDH--TVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs~D---gsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaS-gS~Dg--tVrVWDl~tg~~l~~l~gH~  149 (768)
                      .++..|+..+.+   ..|.+|++.+++   +....+.+....|+|||+.|+. .+.++  .|++||+++++.. .+..+.
T Consensus       208 pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~  286 (430)
T PRK00178        208 PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP  286 (430)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence            455555544322   358888987663   3444455667999999998874 44444  6999999988754 455555


Q ss_pred             CCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR  222 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d--~I~IWDl~t~  222 (768)
                      .......|+| |++.++..+. ++  .|+++|+.+++...............|+|||++|+..+.  +  .|.+||+.++
T Consensus       287 ~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        287 AIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             CCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence            5566789999 7776666553 33  688889988876544332333456789999999988873  2  2889999876


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +...    +. .........|+|||+.++.+..
T Consensus       366 ~~~~----lt-~~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        366 SVRI----LT-DTSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             CEEE----cc-CCCCCCCceECCCCCEEEEEEe
Confidence            5422    22 2222335689999999888765

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.02  E-value=2e-08  Score=108.21  Aligned_cols=158  Identities=19%  Similarity=0.214  Sum_probs=116.3

Q ss_pred             CeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC---CCCcEEEEEccCCCCE
Q 004203           91 ESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH---RRTPWVVRFHPLNPTI  164 (768)
Q Consensus        91 gsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH---~g~V~sVafSP~dg~l  164 (768)
                      ..+++.+.+.....   .....|.++.++  .++|+++-.+. |+|||+++.+.+.++..-   ...+..+.+++ ++.+
T Consensus        68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~y  143 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCY  143 (391)
T ss_pred             ceEEEEEcccCceEEEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CCce
Confidence            45677776544211   235578888887  45666666654 999999999998887543   33354455555 4557


Q ss_pred             EEE-Ee-CCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEeec--CCCC
Q 004203          165 IAS-GS-LDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR--TRRS  237 (768)
Q Consensus       165 LaS-gS-~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~~l~~--h~~~  237 (768)
                      ++. ++ ..|.|.|||+.+-+.+..+ .|.+.+.+++|+++|.+||++++.+  ||++.+.+++...   .+..  -...
T Consensus       144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~---eFRRG~~~~~  220 (391)
T KOG2110|consen  144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY---EFRRGTYPVS  220 (391)
T ss_pred             EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee---eeeCCceeeE
Confidence            776 33 3579999999998887776 5999999999999999999999755  9999998887644   1211  1457


Q ss_pred             eEEEEEccCCCeEEEEEe
Q 004203          238 LRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       238 V~sVaFSPDG~~LlaS~s  255 (768)
                      |.+++|+||+++|.++++
T Consensus       221 IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  221 IYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             EEEEEECCCCCeEEEecC
Confidence            899999999998888776

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.02  E-value=2.6e-08  Score=111.20  Aligned_cols=170  Identities=18%  Similarity=0.133  Sum_probs=118.4

Q ss_pred             cCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCC--CeEEEEeCCCCeEEEEEecCC
Q 004203           79 DARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGD--HTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs~D---gsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSg-S~D--gtVrVWDl~tg~~l~~l~gH~  149 (768)
                      .+++.|+....+   ..|.+|++.+++   +..+.+.+.+++|+|||+.|+.. +.+  ..|++||+.+++.. .+..+.
T Consensus       199 pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~  277 (417)
T TIGR02800       199 PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP  277 (417)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC
Confidence            345555544432   479999998763   44566677889999999987654 433  46999999887644 344455


Q ss_pred             CCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMR  222 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~  222 (768)
                      .......|+| +++.|+..+. ++  .|+++|+.+++..........+....|+|||++|+..+.+    .|.+||+.++
T Consensus       278 ~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       278 GIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            5555679999 8887776554 33  6889999888765555455667788999999999888743    4899998775


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...    .+.. ........|+|||++|+++..
T Consensus       357 ~~~----~l~~-~~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       357 GER----VLTD-TGLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             CeE----EccC-CCCCCCceECCCCCEEEEEEe
Confidence            431    1222 223456789999998887765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.96  E-value=5.6e-10  Score=129.05  Aligned_cols=150  Identities=20%  Similarity=0.323  Sum_probs=122.3

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s  181 (768)
                      .|.+|...|+|+.|...|.++++|++|..||||..+++.++....||.+.|+.++.+. +...+++++.|..|++|-+..
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence            3679999999999999999999999999999999999999999999999999999998 888999999999999999999


Q ss_pred             CcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeE-eecCCCCeEEEEEccCCCeEEEEEe
Q 004203          182 AECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI-VLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       182 g~~i~~l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~-l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +.++..+ +|.+.|++++|+|-.   .++.+|.+++||.+-.-....|.. ......-+-++.|..++..+++...
T Consensus       264 ~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  264 GAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             CchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            9998874 799999999999976   233356699999983222111111 1223456677777777776666544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.93  E-value=2.1e-09  Score=119.83  Aligned_cols=94  Identities=27%  Similarity=0.373  Sum_probs=86.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (768)
Q Consensus       107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~  186 (768)
                      .+.|+.++|+|||++||+.+.||.+||||..+.+.+..++..-+...|++||| |+++|++|+.|.-|.||.+..++.+.
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence            44789999999999999999999999999999888888777778899999999 99999999999999999999988877


Q ss_pred             E-ecCCCCeEEEEEcC
Q 004203          187 S-RDFYRPIASIAFHA  201 (768)
Q Consensus       187 ~-l~h~~~V~svafSP  201 (768)
                      . .+|+..|..++|+|
T Consensus       369 RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccccccceeeEeecc
Confidence            6 67999999999997

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=1.2e-07  Score=108.20  Aligned_cols=170  Identities=16%  Similarity=0.098  Sum_probs=109.6

Q ss_pred             cCCCEEEEEeC-C--CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCC--eEEEEeCCCCeEEEEEecCC
Q 004203           79 DARRGLASWVE-A--ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs~-D--gsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSg-S~Dg--tVrVWDl~tg~~l~~l~gH~  149 (768)
                      .+++.|+..+. +  ..|.+||+.+++   +....+.....+|+|||+.|+.. +.++  .|++||+++++.. .+..+.
T Consensus       227 PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~  305 (448)
T PRK04792        227 PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR  305 (448)
T ss_pred             CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC
Confidence            34455543332 2  257888887653   33333445678999999988754 4555  4888899888754 444455


Q ss_pred             CCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIWRYNMR  222 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d~--I~IWDl~t~  222 (768)
                      .......|+| |++.|+..+. ++  .|+++|+.+++..............+|+|||++|++.+.  +.  |.++|+.++
T Consensus       306 ~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        306 AIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             CCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            5567789999 7777766553 33  688889988876554322333445789999999988763  22  677787776


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +...    +... .......|+|||+.|+.+..
T Consensus       385 ~~~~----lt~~-~~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        385 AMQV----LTST-RLDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             CeEE----ccCC-CCCCCceECCCCCEEEEEEe
Confidence            5321    2222 12234589999998887764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.87  E-value=9.6e-09  Score=106.61  Aligned_cols=139  Identities=18%  Similarity=0.231  Sum_probs=113.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--CeEE-
Q 004203           80 ARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--GSCL-  142 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~--------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t--g~~l-  142 (768)
                      ....++.|-++|.+.+||..++              ....|+.+|.++.|.+.-..=++|+.+..+..|+++.  +.+. 
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence            4456778999999999999875              2457999999999998666667888888999998754  3221 


Q ss_pred             -EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEc
Q 004203          143 -KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (768)
Q Consensus       143 -~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl  219 (768)
                       ..+.-..-.|..+..-| |++++|+++.|+.||+|..++..++..++ |...|++++|+||...+|.++.|. |.+|++
T Consensus       244 ~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence             11111223477789999 99999999999999999999999998876 889999999999999999999655 999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=2.4e-08  Score=111.61  Aligned_cols=146  Identities=16%  Similarity=0.154  Sum_probs=115.3

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCC---------
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT---------  138 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~-----L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~t---------  138 (768)
                      .....+|..|++|+.|..+.+||....+     -.+|...|.++.|-|  +.+++++|..|..|++||+..         
T Consensus        56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~  135 (758)
T KOG1310|consen   56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG  135 (758)
T ss_pred             eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC
Confidence            3344688999999999999999987554     259999999999999  677899999999999999974         


Q ss_pred             -CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-------EEEe----cCCCCeEEEEEcCCCC-E
Q 004203          139 -GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-------IGSR----DFYRPIASIAFHASGE-L  205 (768)
Q Consensus       139 -g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-------i~~l----~h~~~V~svafSPDG~-~  205 (768)
                       .+....+..|...|..++..|...+.+.+++.||+|+-+|++....       ...+    ..--...++..+|... +
T Consensus       136 ~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~  215 (758)
T KOG1310|consen  136 MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYY  215 (758)
T ss_pred             ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCce
Confidence             1334566789999999999995558999999999999999986321       1111    1122457889999765 7


Q ss_pred             EEEEECCe-EEEEEcC
Q 004203          206 LAVASGHK-LYIWRYN  220 (768)
Q Consensus       206 LatgSdd~-I~IWDl~  220 (768)
                      |++|+.+- .++||.+
T Consensus       216 laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  216 LAVGGSDPFARLYDRR  231 (758)
T ss_pred             EEecCCCchhhhhhhh
Confidence            78887776 9999954

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.82  E-value=2.7e-08  Score=118.13  Aligned_cols=141  Identities=21%  Similarity=0.248  Sum_probs=119.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE-EEecCCCCcEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPWV  154 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~g~V~s  154 (768)
                      ..-++++++--+.|.+|+....    .+.+|.+.|..+.|+-||+++++.|+|.++++|++++.+... ...+|...|+.
T Consensus       144 ~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~  223 (967)
T KOG0974|consen  144 EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA  223 (967)
T ss_pred             cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence            4567888888999999998744    378999999999999999999999999999999999988765 66789999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~-~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~  223 (768)
                      +.|+| +  .+++++.|.+.++|+....+......|. +.+..++..++...++++++|+ +++||+....
T Consensus       224 ~~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  224 CCFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             EEecc-c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            99999 4  9999999999999977654444333443 5788999999999999998655 9999987643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.80  E-value=1.7e-07  Score=96.56  Aligned_cols=179  Identities=12%  Similarity=0.000  Sum_probs=120.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE---
Q 004203           79 DARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---  141 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~--------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~---  141 (768)
                      ..++.++.+..+|.|-+..+..-              .+++|.++|+.++|.  ..+|++|+. |.|+=|..+....   
T Consensus        20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~   96 (325)
T KOG0649|consen   20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLA   96 (325)
T ss_pred             CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhcc
Confidence            34566777778888877776521              246899999999999  456666654 9999997654321   


Q ss_pred             ---EEEE--ecCC-----CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE
Q 004203          142 ---LKVL--HGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       142 ---l~~l--~gH~-----g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS  210 (768)
                         +...  .-|.     -.|+.+-..| ..+-+++++.|+.++-||+++|+.++++ +|.+.+.++.--.....+.+|+
T Consensus        97 ~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~  175 (325)
T KOG0649|consen   97 TKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA  175 (325)
T ss_pred             chhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC
Confidence               1111  1222     3588888899 5555556668999999999999999986 5999999999855555677777


Q ss_pred             -CCeEEEEEcCCCccccCCeEe------e-cCCCCeEEEEEccCCCeEEEEEe----eCCcCCCC
Q 004203          211 -GHKLYIWRYNMREETSSPRIV------L-RTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSE  263 (768)
Q Consensus       211 -dd~I~IWDl~t~~~~~~~~~l------~-~h~~~V~sVaFSPDG~~LlaS~s----vwdl~sg~  263 (768)
                       ||++++||.++++........      . ....+|-+++-  +..+++.++.    .|.++..+
T Consensus       176 EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse  238 (325)
T KOG0649|consen  176 EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSE  238 (325)
T ss_pred             CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCC
Confidence             556999999998865411110      0 01234555554  4456666654    67776543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.79  E-value=5.4e-07  Score=100.62  Aligned_cols=168  Identities=17%  Similarity=0.199  Sum_probs=116.5

Q ss_pred             EEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEcc
Q 004203           84 LASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP  159 (768)
Q Consensus        84 LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP  159 (768)
                      ++.-..++.|.+.|..+.+    +......-..+.|+|||+++++++.|+.|.++|+.+++.+..++.. .....+++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~   87 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP   87 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence            3456678899999988763    3333333345789999999999999999999999999999998754 4477899999


Q ss_pred             CCCCEEEEEe-CCCeEEEEECCCCcEEEEecC--------CCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCC
Q 004203          160 LNPTIIASGS-LDHEVRLWNASTAECIGSRDF--------YRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSP  228 (768)
Q Consensus       160 ~dg~lLaSgS-~DgtVrLWDl~sg~~i~~l~h--------~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~  228 (768)
                       ||++++.+. .++.+.++|.++.+.++.+..        ...+..+..+|....+++.-.  +.|.+.|+...+...  
T Consensus        88 -DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--  164 (369)
T PF02239_consen   88 -DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--  164 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--
T ss_pred             -CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--
Confidence             888877665 688999999999998887642        346778888998886666664  448888887764321  


Q ss_pred             eEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..............|+|++++++.+..
T Consensus       165 ~~~i~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  165 VTTIKVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             EEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred             eeeecccccccccccCcccceeeeccc
Confidence            234445678889999999999877653

...

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=9.3e-08  Score=113.42  Aligned_cols=173  Identities=15%  Similarity=0.166  Sum_probs=127.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCCCC
Q 004203           81 RRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRT  151 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L-----~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~g~  151 (768)
                      .+.|++.++-..|++||++..+.     .+-...|+++.-+. .|+.|+.|-.||.|++||.+...   .+...+.|...
T Consensus      1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred             CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence            44555555678899999986632     24555677776665 56999999999999999987643   46777889887


Q ss_pred             --cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cC---CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004203          152 --PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DF---YRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (768)
Q Consensus       152 --V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l---~h---~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~  223 (768)
                        |..+.+.+.+-..|++|+.||.|++||++.......+   .|   .+..+++..|++...+|+|+...|+||++....
T Consensus      1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ 1336 (1387)
T ss_pred             ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhh
Confidence              8899998844456999999999999999985222211   12   235899999999999999999779999997654


Q ss_pred             ccc---CCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          224 ETS---SPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       224 ~~~---~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ...   .+..+......+.+++|||.--.++++
T Consensus      1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             hcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence            322   111222234678999999987755554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=1.9e-07  Score=105.52  Aligned_cols=144  Identities=18%  Similarity=0.265  Sum_probs=99.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 004203          106 PPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg  182 (768)
                      |...|..+.|+-+|.||++...   ...|.|+++...+...-|+...+.|.++.|+| ...+|+.++. ..|+|||+...
T Consensus       520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kq  597 (733)
T KOG0650|consen  520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQ  597 (733)
T ss_pred             cCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHH
Confidence            3444555555555555555433   23455555554444444545567799999999 6666666554 46999999987


Q ss_pred             cEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          183 ECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       183 ~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      +.++.+. ....|..++.+|.|..|+.++.+ ++..+|++.....  ...+.-|...+++|+||+.-..++++
T Consensus       598 elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP--yk~lr~H~~avr~Va~H~ryPLfas~  668 (733)
T KOG0650|consen  598 ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP--YKTLRLHEKAVRSVAFHKRYPLFASG  668 (733)
T ss_pred             HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch--hHHhhhhhhhhhhhhhccccceeeee
Confidence            7766643 55688999999999999999955 5999999877542  23455688999999999877744443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.76  E-value=4.1e-07  Score=103.05  Aligned_cols=171  Identities=15%  Similarity=0.061  Sum_probs=139.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEEC--------------------CCCCEEEEEeCCCeEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAFS--------------------PDGKTLASTHGDHTVK  132 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L~-------gH~~~VtslafS--------------------PDG~~LaSgS~DgtVr  132 (768)
                      ...+++....||.+++|+....++.       .-++..++..|.                    -|-..++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            3456677788999999999876432       224455555552                    2334667788899999


Q ss_pred             EEeCCCCeEEEEEe--cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 004203          133 IIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVA  209 (768)
Q Consensus       133 VWDl~tg~~l~~l~--gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~Latg  209 (768)
                      +|++..|+....+.  +|.+.|.++.++. +-..|.|++.|+.+..|+...+..++.+. ....+.+++.+|||+.|+++
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            99999999887775  6889999999988 88899999999999999999999888875 56688999999999998876


Q ss_pred             ECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccC-----CCeEEEEEe
Q 004203          210 SGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH-----AAPLLLTAE  255 (768)
Q Consensus       210 Sdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPD-----G~~LlaS~s  255 (768)
                      + +.|++||+.+++...   .+.+|...|+++.|--+     |.+++++..
T Consensus       163 s-~~ik~~~~~~kevv~---~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~  209 (541)
T KOG4547|consen  163 S-RQIKVLDIETKEVVI---TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA  209 (541)
T ss_pred             c-ceEEEEEccCceEEE---EecCCCcceEEEEEEEeccccccceeeeccc
Confidence            5 679999999998755   88999999999999988     888887664

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.74  E-value=8.9e-07  Score=102.92  Aligned_cols=176  Identities=11%  Similarity=0.061  Sum_probs=127.3

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCCE--EEEEeCCCeEEEEeCCCCeE----
Q 004203           78 RDARRGLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGKT--LASTHGDHTVKIIDCQTGSC----  141 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~~----------L~gH~~~VtslafSPDG~~--LaSgS~DgtVrVWDl~tg~~----  141 (768)
                      ..+...++.|..+|.|.+||.....          ...|..+|+.+.|-.+..-  |++++.||.|..|+++.-..    
T Consensus       252 p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~  331 (555)
T KOG1587|consen  252 PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG  331 (555)
T ss_pred             cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence            3467889999999999999998652          2379999999999885544  99999999999998764322    


Q ss_pred             --EEEEe------cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC---CCc-----EE-EEecCCCCeEEEEEcCCCC
Q 004203          142 --LKVLH------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS---TAE-----CI-GSRDFYRPIASIAFHASGE  204 (768)
Q Consensus       142 --l~~l~------gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~---sg~-----~i-~~l~h~~~V~svafSPDG~  204 (768)
                        .....      .....++++.|.+.+...++.|+.+|.|+--+-.   ...     .+ ....|.+.|+++.++|=+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~  411 (555)
T KOG1587|consen  332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP  411 (555)
T ss_pred             cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc
Confidence              11111      1123578899999888999999999988773333   222     01 1124788999999999776


Q ss_pred             -EEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          205 -LLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       205 -~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                       .+.+++|.+++||.-.....  .......+...|.+++|||....++++..
T Consensus       412 k~fls~gDW~vriWs~~~~~~--Pl~~~~~~~~~v~~vaWSptrpavF~~~d  461 (555)
T KOG1587|consen  412 KNFLSVGDWTVRIWSEDVIAS--PLLSLDSSPDYVTDVAWSPTRPAVFATVD  461 (555)
T ss_pred             ceeeeeccceeEeccccCCCC--cchhhhhccceeeeeEEcCcCceEEEEEc
Confidence             45555577899998763222  22344556677999999999887777665

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.74  E-value=1e-07  Score=107.31  Aligned_cols=156  Identities=17%  Similarity=0.157  Sum_probs=124.7

Q ss_pred             CCeEEEEEecCCCEEEEEeCCCeEEEEeCC--------------CCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 004203           70 FSQIFEAGRDARRGLASWVEAESLHHLRPK--------------YCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (768)
Q Consensus        70 ~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~--------------t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWD  135 (768)
                      ...+.+.....+..+++++-|++|+.|++.              .+.+.||++.|+.+++|+....|++++.||+|++|+
T Consensus       345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~  424 (577)
T KOG0642|consen  345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE  424 (577)
T ss_pred             CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence            334555666789999999999999999543              225789999999999999999999999999999998


Q ss_pred             CCCCeE--------------------------------------------EEEEe-----c--CCCCcEEEEEccCCCCE
Q 004203          136 CQTGSC--------------------------------------------LKVLH-----G--HRRTPWVVRFHPLNPTI  164 (768)
Q Consensus       136 l~tg~~--------------------------------------------l~~l~-----g--H~g~V~sVafSP~dg~l  164 (768)
                      ......                                            +..+.     +  ....+..+.++| +..+
T Consensus       425 ~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~  503 (577)
T KOG0642|consen  425 PTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADI  503 (577)
T ss_pred             cCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCe
Confidence            744322                                            00000     0  013356688899 8899


Q ss_pred             EEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcccc
Q 004203          165 IASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETS  226 (768)
Q Consensus       165 LaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~  226 (768)
                      .+++-.|+.|+++|..+++.+.. ..|...++++++.|+|-+|++++. +.+++|.+.......
T Consensus       504 ~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  504 TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             eEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence            99999999999999999998776 568899999999999999999995 559999987766533

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.71  E-value=4.2e-07  Score=109.54  Aligned_cols=195  Identities=12%  Similarity=0.153  Sum_probs=137.0

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-----  140 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-----  140 (768)
                      .++.+..+++++.||+|++|+...-           ++..-...+.++.+.+.++.+|.++.||.|++.+++-.+     
T Consensus      1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred             cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccce
Confidence            4455689999999999999998632           122245678899999999999999999999999987621     


Q ss_pred             --EEEEE--ecCCCCcEEEEEccCCCC-EEEEEeCCCeEEEEECCCCcEEEEec---CCCCeEEEEEcCCCCEEEEEECC
Q 004203          141 --CLKVL--HGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGH  212 (768)
Q Consensus       141 --~l~~l--~gH~g~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~sg~~i~~l~---h~~~V~svafSPDG~~LatgSdd  212 (768)
                        +.+..  ++.+..|..-+|....+. .++.+..-+.|..||+++.....+++   ..+.|++++.+|.+.+++.|+..
T Consensus      1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred             eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC
Confidence              11111  222222333344433444 78888888999999999877666654   46789999999999999999965


Q ss_pred             -eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCC---eEEEEEe-------eCCcCCCCcceeEeecCC
Q 004203          213 -KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA---PLLLTAE-------VNDLDSSESSLTLATSPG  273 (768)
Q Consensus       213 -~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~---~LlaS~s-------vwdl~sg~~~~~L~t~~G  273 (768)
                       .+-+||++-+..+..  ....+..+++.+..+|--+   ..++++.       .|++..+.....+...++
T Consensus      1217 G~l~lWDLRF~~~i~s--w~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~ 1286 (1431)
T KOG1240|consen 1217 GQLVLWDLRFRVPILS--WEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDG 1286 (1431)
T ss_pred             ceEEEEEeecCceeec--ccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCC
Confidence             499999998876441  1223457788777777543   4444443       778877766666655533

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.71  E-value=9.5e-07  Score=94.08  Aligned_cols=142  Identities=18%  Similarity=0.199  Sum_probs=107.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeE--EEEEecCCC
Q 004203           81 RRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSC--LKVLHGHRR  150 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~-------L~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~--l~~l~gH~g  150 (768)
                      +.+|+.. .++.|.+|......       .......+.+++-..+..+||.= -.-|.|.|-|+...+.  ...+..|..
T Consensus       104 r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s  182 (346)
T KOG2111|consen  104 RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS  182 (346)
T ss_pred             CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC
Confidence            3444433 35688888876431       11223334444444455555543 3468999999977655  478899999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEec---CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~sg~~i~~l~---h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~  224 (768)
                      .|.|++.+- +|.++|++|..|+ |||||..+|+.+..+.   ....|.+++|+||+.+|+++||.+ ++|+.++....
T Consensus       183 ~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  183 DIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             ceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence            999999999 9999999999996 8999999999988864   456899999999999999999754 99999977553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.71  E-value=2.3e-06  Score=100.61  Aligned_cols=215  Identities=13%  Similarity=0.153  Sum_probs=143.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC---CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG---~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      +.+.++ +..+..|+++...++    .+.+|..+++.+.+.|..   .++++++.||+|++||...++.++++..+.. +
T Consensus        27 D~k~l~-~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v  104 (792)
T KOG1963|consen   27 DAKFLF-LCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-V  104 (792)
T ss_pred             CCcEEE-EeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-e
Confidence            344443 445678999999887    588999999999999944   4677999999999999998887777653321 2


Q ss_pred             EE-----------------------------------------------------------EEEccCCCCEEEEEeCCCe
Q 004203          153 WV-----------------------------------------------------------VRFHPLNPTIIASGSLDHE  173 (768)
Q Consensus       153 ~s-----------------------------------------------------------VafSP~dg~lLaSgS~Dgt  173 (768)
                      ..                                                           +.+++ .+. +.....+..
T Consensus       105 ~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~ge-~~~i~~~~~  182 (792)
T KOG1963|consen  105 HALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-SGE-FKGIVHMCK  182 (792)
T ss_pred             eEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-Cce-EEEEEEeee
Confidence            11                                                           22222 122 222223445


Q ss_pred             EEEEECCCCcEEEE-----ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC-CccccCCeEeecCCCCeEEEEEccC
Q 004203          174 VRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM-REETSSPRIVLRTRRSLRAVHFHPH  246 (768)
Q Consensus       174 VrLWDl~sg~~i~~-----l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t-~~~~~~~~~l~~h~~~V~sVaFSPD  246 (768)
                      +++|+..++.....     ..|...+++.++||++++++++. +|+|.+|.--. .........+..|...|.++.|++|
T Consensus       183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~  262 (792)
T KOG1963|consen  183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD  262 (792)
T ss_pred             EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence            77777776441111     23556689999999999999998 56699996433 2333345677789999999999999


Q ss_pred             CCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCC
Q 004203          247 AAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH  325 (768)
Q Consensus       247 G~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~  325 (768)
                      |.+|++++...                       ++.+|...++.    ....|....+++...+|||+....+...|.
T Consensus       263 G~~LlSGG~E~-----------------------VLv~Wq~~T~~----kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  263 GAYLLSGGREG-----------------------VLVLWQLETGK----KQFLPRLGSPILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             CceEeecccce-----------------------EEEEEeecCCC----cccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence            99999887521                       23333333322    122334456788888999998877765543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.68  E-value=1.1e-05  Score=87.63  Aligned_cols=165  Identities=13%  Similarity=0.172  Sum_probs=119.3

Q ss_pred             CCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCC--CeEEE--EEecCCCCcEEE
Q 004203           90 AESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQT--GSCLK--VLHGHRRTPWVV  155 (768)
Q Consensus        90 DgsIrlWd~~t~-------~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~t--g~~l~--~l~gH~g~V~sV  155 (768)
                      ++-|.+|++.+.       ++..+.+..+=++|+|++++|+++-.+   |.|-.|.++.  |+...  .....+.....+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            567899988743       355788899999999999999998664   6677776654  55321  112223344678


Q ss_pred             EEccCCCCEEEEEeCC-CeEEEEECCC-CcE---EEEecCCCC----------eEEEEEcCCCCEEEEEE--CCeEEEEE
Q 004203          156 RFHPLNPTIIASGSLD-HEVRLWNAST-AEC---IGSRDFYRP----------IASIAFHASGELLAVAS--GHKLYIWR  218 (768)
Q Consensus       156 afSP~dg~lLaSgS~D-gtVrLWDl~s-g~~---i~~l~h~~~----------V~svafSPDG~~LatgS--dd~I~IWD  218 (768)
                      ++++ ++++++++... +.|.++-++. |..   +....|.+.          +....|+|++++|++..  .|+|.+|+
T Consensus        95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence            9999 99998888764 6899999965 443   333455554          88899999999999988  56799999


Q ss_pred             cCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +..+................+.|.|+|++++..+..+
T Consensus       174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E  210 (346)
T COG2706         174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE  210 (346)
T ss_pred             cccCccccccccccCCCCCcceEEEcCCCcEEEEEec
Confidence            9976543322222345677899999999997666554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.68  E-value=7e-07  Score=106.22  Aligned_cols=176  Identities=15%  Similarity=0.168  Sum_probs=125.6

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~----------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~  141 (768)
                      ..+...+++++.||.|++|+-...                .+.+-.+.=.-++|.....+|+++++-..|+|||.+...+
T Consensus      1120 e~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1120 EQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV 1199 (1387)
T ss_pred             ccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee
Confidence            345677889999999999985421                1222233335577888667777777789999999988777


Q ss_pred             EEEEe-cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---EEE-ecCCCC--eEEEEEcCCCC-EEEEEE-CC
Q 004203          142 LKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGS-RDFYRP--IASIAFHASGE-LLAVAS-GH  212 (768)
Q Consensus       142 l~~l~-gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---i~~-l~h~~~--V~svafSPDG~-~LatgS-dd  212 (768)
                      +..+. +....|+++.-+-..+++++.|..||.|++||.+....   +.. ..|...  |..+.+.+.|- .|++++ +|
T Consensus      1200 ~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1200 VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred             EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence            76664 33445777766655789999999999999999987543   333 346655  99999998775 488887 56


Q ss_pred             eEEEEEcCCCccccCCeEeecCC--C-CeEEEEEccCCCeEEEEE
Q 004203          213 KLYIWRYNMREETSSPRIVLRTR--R-SLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       213 ~I~IWDl~t~~~~~~~~~l~~h~--~-~V~sVaFSPDG~~LlaS~  254 (768)
                      .|++||++...... ...+..|.  + .++++..|++...+++++
T Consensus      1280 ~I~~~DlR~~~~e~-~~~iv~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKET-FLTIVAHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred             eEEEEecccCcccc-cceeeeccccCccceeeeeccCCCeeeecC
Confidence            69999999853222 33333332  3 599999999999665554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.64  E-value=8.5e-07  Score=103.09  Aligned_cols=171  Identities=16%  Similarity=0.169  Sum_probs=122.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC-------C--C-------CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe----
Q 004203           82 RGLASWVEAESLHHLRPKYCP-------L--S-------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS----  140 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~-------L--~-------gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~----  140 (768)
                      ..+++++.||+|..|+.+--.       +  .       .-...+++++|.+ +-..|+.|+.+|.|..-+....+    
T Consensus       306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence            569999999999999876321       1  1       1234689999999 77889999999999885443322    


Q ss_pred             ----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CCcEEEEec-CCCCeEEEEEcCCCCEEEEE-E-CC
Q 004203          141 ----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGSRD-FYRPIASIAFHASGELLAVA-S-GH  212 (768)
Q Consensus       141 ----~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-sg~~i~~l~-h~~~V~svafSPDG~~Latg-S-dd  212 (768)
                          ....+..|.+.|+.+.++|...+++++++ |.+|+||... ...++..+. +...|++++|+|....+.+. . +|
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G  464 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG  464 (555)
T ss_pred             ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence                12345567899999999997777777777 9999999987 555555444 55669999999987654444 4 45


Q ss_pred             eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       213 ~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      .|.+||+....... .....-+....+.+.|+++|+.++++.
T Consensus       465 ~l~iWDLl~~~~~P-v~s~~~~~~~l~~~~~s~~g~~lavGd  505 (555)
T KOG1587|consen  465 NLDIWDLLQDDEEP-VLSQKVCSPALTRVRWSPNGKLLAVGD  505 (555)
T ss_pred             ceehhhhhccccCC-cccccccccccceeecCCCCcEEEEec
Confidence            59999998765532 112222356678888999999666554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.63  E-value=5.2e-06  Score=94.25  Aligned_cols=186  Identities=14%  Similarity=0.066  Sum_probs=117.6

Q ss_pred             CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCC-EEEEEeCC---CeEEEEECCCCcEEEEecCCCCeEEEEEcCCC
Q 004203          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASG  203 (768)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~-lLaSgS~D---gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG  203 (768)
                      ...|.+-|.+... .+.+.... ......|+| |++ +++..+.+   ..|+++|+.+++........+......|+|||
T Consensus       168 ~~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG  244 (419)
T PRK04043        168 KSNIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDG  244 (419)
T ss_pred             cceEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCC
Confidence            3467777766544 33333333 677889999 776 46654443   47999999999877766666667778999999


Q ss_pred             CEEEEEEC--C--eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCC
Q 004203          204 ELLAVASG--H--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPP  279 (768)
Q Consensus       204 ~~LatgSd--d--~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~  279 (768)
                      +.|+...+  +  .|+++|+.++...    .+..+........|+|||+.|++++...               +.     
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SPDG~~I~F~Sdr~---------------g~-----  300 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVEDDKRIVFVSDRL---------------GY-----  300 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECCCCCEEEEEECCC---------------CC-----
Confidence            98876652  2  2999998776532    2333333344568999999998887421               11     


Q ss_pred             CeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCC----C-cceEEeccCCCceeeeec
Q 004203          280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDS----G-ATRTQQSLRSSSSVRLLT  346 (768)
Q Consensus       280 ~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~----G-s~~~~~~~~ss~~~rl~~  346 (768)
                      +.++..+...+....+...  +    ...+.|||||++|++.....+-    + ..++..+.++...++|+.
T Consensus       301 ~~Iy~~dl~~g~~~rlt~~--g----~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~  366 (419)
T PRK04043        301 PNIFMKKLNSGSVEQVVFH--G----KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA  366 (419)
T ss_pred             ceEEEEECCCCCeEeCccC--C----CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence            2345555444333222221  1    1235899999999998654321    2 456666776666555554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.61  E-value=1.5e-06  Score=92.68  Aligned_cols=160  Identities=13%  Similarity=0.094  Sum_probs=112.0

Q ss_pred             CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEec---CCCCcEEEEEccCCC
Q 004203           90 AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHG---HRRTPWVVRFHPLNP  162 (768)
Q Consensus        90 DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~-tg~~l~~l~g---H~g~V~sVafSP~dg  162 (768)
                      -.+|.+||-....   -..-...|.++.+++|  .|++. ....|+||... +-+.+..+..   ..+ ..+++-+. +.
T Consensus        74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkG-lC~~~~~~-~k  148 (346)
T KOG2111|consen   74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKG-LCSLCPTS-NK  148 (346)
T ss_pred             CceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCc-eEeecCCC-Cc
Confidence            4568889843321   1234667888988864  44443 45689999987 4455555432   333 33333333 34


Q ss_pred             CEEEE-EeCCCeEEEEECCCCcE---EEEecCCCCeEEEEEcCCCCEEEEEEC-Ce-EEEEEcCCCccccCCeEeecCCC
Q 004203          163 TIIAS-GSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHASGELLAVASG-HK-LYIWRYNMREETSSPRIVLRTRR  236 (768)
Q Consensus       163 ~lLaS-gS~DgtVrLWDl~sg~~---i~~l~h~~~V~svafSPDG~~LatgSd-d~-I~IWDl~t~~~~~~~~~l~~h~~  236 (768)
                      .+||. |-.-|.|.|-|+...+.   ....+|...|.+++.+-+|..+|++|. |+ |+|||..+++...+ ...-....
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E-~RRG~d~A  227 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE-LRRGVDRA  227 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee-eecCCchh
Confidence            45555 55678999999987655   566789999999999999999999995 55 99999999987552 11122357


Q ss_pred             CeEEEEEccCCCeEEEEEe
Q 004203          237 SLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       237 ~V~sVaFSPDG~~LlaS~s  255 (768)
                      .|.+++|||+..+|++++.
T Consensus       228 ~iy~iaFSp~~s~LavsSd  246 (346)
T KOG2111|consen  228 DIYCIAFSPNSSWLAVSSD  246 (346)
T ss_pred             eEEEEEeCCCccEEEEEcC
Confidence            8999999999998888775

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.60  E-value=7.4e-07  Score=95.11  Aligned_cols=137  Identities=17%  Similarity=0.274  Sum_probs=104.9

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCE-EEEEeCCCeEEEEECCCCcEEEEec-
Q 004203          112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI-IASGSLDHEVRLWNASTAECIGSRD-  189 (768)
Q Consensus       112 slafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~l-LaSgS~DgtVrLWDl~sg~~i~~l~-  189 (768)
                      -+.|||+|+++|+++.- .+.|-|.++-+....|.. -..|.-+.|.- |..+ +.....|+.|.+|++...+-...++ 
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~a-ds~~ilC~~yk~~~vqvwsl~Qpew~ckIde   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKA-DSCHILCVAYKDPKVQVWSLVQPEWYCKIDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeec-cceeeeeeeeccceEEEEEeecceeEEEecc
Confidence            47899999999998765 788888887765554443 34577789998 5554 4556778899999999887766665 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          190 FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       190 h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ....+.+++|+|||+.|...+  +-+|.+|.+.+.....    +...+..+..++|+|||++.+....
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCCceeeeeec
Confidence            567899999999998887777  3459999999887532    3333567799999999997766554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.60  E-value=2.5e-06  Score=103.05  Aligned_cols=164  Identities=18%  Similarity=0.143  Sum_probs=115.7

Q ss_pred             EeCCCC---CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCC-------eEEEEEecCCCCcEEEEEccCCCCE
Q 004203           96 LRPKYC---PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTI  164 (768)
Q Consensus        96 Wd~~t~---~L~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~g~V~sVafSP~dg~l  164 (768)
                      |+.+..   .+..|+..|..++.+++ +.+|++||.||+||+||++.-       +...++.-.+..+.++.+.+ .++.
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQ 1112 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCe
Confidence            555433   57789999999999884 499999999999999998541       23344443567788999999 9999


Q ss_pred             EEEEeCCCeEEEEECCCCc-------EEEEe--cCCCCeEE-EEEcCC-CC-EEEEEEC-CeEEEEEcCCCccccCCeEe
Q 004203          165 IASGSLDHEVRLWNASTAE-------CIGSR--DFYRPIAS-IAFHAS-GE-LLAVASG-HKLYIWRYNMREETSSPRIV  231 (768)
Q Consensus       165 LaSgS~DgtVrLWDl~sg~-------~i~~l--~h~~~V~s-vafSPD-G~-~LatgSd-d~I~IWDl~t~~~~~~~~~l  231 (768)
                      +|.++.||.|++.++.-.+       +.+..  ...+.+.+ -+|... +. .|+.+.+ ++|..||+++....... ..
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l-k~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL-KN 1191 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh-hc
Confidence            9999999999999987621       11211  22333333 344432 33 5666665 55999999988765411 12


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004203          232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~s  261 (768)
                      .-..+.|++++.+|.+.+++++..     .||++-
T Consensus      1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred             CccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence            223478999999999998888765     777763

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.60  E-value=5.8e-08  Score=107.08  Aligned_cols=188  Identities=15%  Similarity=0.105  Sum_probs=155.9

Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203           69 SFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (768)
Q Consensus        69 s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~g---H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (768)
                      .|++...--..+|..|+-++..|.|-.+|..++.|..   -...|.++.|-.+.++||++-. ..++||| ..|..+..+
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~GtElHCl  206 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQK-KYVYVYD-NNGTELHCL  206 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhh-ceEEEec-CCCcEEeeh
Confidence            5566666667789999999999999999998886532   3467999999998888887754 5899999 557888888


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCc
Q 004203          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMRE  223 (768)
Q Consensus       146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~  223 (768)
                      +.|.. |..+.|-| ..-+|++++..|.++.-|+.+|+.+..+. -.+.+..++-+|-+..+-+|.. |.|.+|.-...+
T Consensus       207 k~~~~-v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  207 KRHIR-VARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             hhcCc-hhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            87755 88899999 88889999999999999999999988765 4567888888998888888874 559999988777


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~  263 (768)
                      ..   ..+..|.++|++|++.++|+|+++++.     +||++...
T Consensus       285 PL---vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  285 PL---VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             hH---HHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence            53   478889999999999999999999886     88888544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=6.5e-07  Score=101.01  Aligned_cols=167  Identities=14%  Similarity=0.172  Sum_probs=129.0

Q ss_pred             EEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec------CCC--
Q 004203           83 GLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG------HRR--  150 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g------H~g--  150 (768)
                      .|..++....|.-++++.+.    |....+.+++|..++-..+|++|+.||.|..||.++...+..+..      |.+  
T Consensus       147 Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~  226 (703)
T KOG2321|consen  147 DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD  226 (703)
T ss_pred             cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc
Confidence            35566666678888888763    455678899999999999999999999999999988776655532      222  


Q ss_pred             ---CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCeEEEEEcCCC--CEEEEEECCeEEEEEcCCCc
Q 004203          151 ---TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY--RPIASIAFHASG--ELLAVASGHKLYIWRYNMRE  223 (768)
Q Consensus       151 ---~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~--~~V~svafSPDG--~~LatgSdd~I~IWDl~t~~  223 (768)
                         .|+++.|+- +|-.++.|..+|.|.|||+++.+++..-.|.  -+|..+.|.+.+  ..|++....-++|||-.+++
T Consensus       227 ~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk  305 (703)
T KOG2321|consen  227 AAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK  305 (703)
T ss_pred             ccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCC
Confidence               489999998 7999999999999999999999988876654  488999997763  34554434449999998886


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ..    ........++.+++-|++-.++++-
T Consensus       306 ~~----asiEpt~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  306 PM----ASIEPTSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             ce----eeccccCCcCceeeecCCceEEEec
Confidence            43    3444556699999999988555543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.58  E-value=5.3e-06  Score=92.71  Aligned_cols=131  Identities=14%  Similarity=0.176  Sum_probs=95.6

Q ss_pred             CEE-EEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEE
Q 004203          120 KTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIA  198 (768)
Q Consensus       120 ~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~sva  198 (768)
                      +++ ++-..++.|.+.|..+.+.+..+.........+.|+| |+++++..++|+.|.++|+.+++.+.++........++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence            445 4556789999999999999999986554444578999 99999999999999999999999999998888889999


Q ss_pred             EcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEeec-------CCCCeEEEEEccCCCeEEEEE
Q 004203          199 FHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLR-------TRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       199 fSPDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l~~-------h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      +++||++++++.  .+.+.++|..+.+...   .+..       ....+.+|..+|....++++.
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~---~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l  146 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVK---TIPTGGMPVDGPESRVAAIVASPGRPEFVVNL  146 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEE---EEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred             EcCCCCEEEEEecCCCceeEecccccccee---ecccccccccccCCCceeEEecCCCCEEEEEE
Confidence            999999999887  5679999998877544   2211       234678888899988666553

...

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.57  E-value=1.4e-07  Score=104.18  Aligned_cols=168  Identities=17%  Similarity=0.230  Sum_probs=133.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ....|++.++.|.++--|+.+++    +..-.+.+..+.-+|-...+-.|...|+|.+|.....+++..+..|.++|.+|
T Consensus       220 yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si  299 (545)
T KOG1272|consen  220 YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI  299 (545)
T ss_pred             hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence            45567888899999999998885    44567788999999988899999999999999999999998889999999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC-c-cccCCeEeec
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR-E-ETSSPRIVLR  233 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~-~-~~~~~~~l~~  233 (768)
                      ++.+ +|.++++.+.|..|+|||++.-....++....+...++||..| .||.+.++.+.||.=... . ....+.....
T Consensus       300 Av~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~  377 (545)
T KOG1272|consen  300 AVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHR  377 (545)
T ss_pred             EECC-CCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhc
Confidence            9999 9999999999999999999987766666556677788888655 566666778999953222 1 1111222222


Q ss_pred             CCCCeEEEEEccCCCe
Q 004203          234 TRRSLRAVHFHPHAAP  249 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~  249 (768)
                      ....|..+.|.|-...
T Consensus       378 ~~~~V~~l~FcP~EDv  393 (545)
T KOG1272|consen  378 CGGPVEDLRFCPYEDV  393 (545)
T ss_pred             cCcccccceeccHHHe
Confidence            3468999999997763

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=3e-06  Score=92.33  Aligned_cols=178  Identities=17%  Similarity=0.136  Sum_probs=132.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----CCC--CCCCCeEEEEECCC-CCEEEEEeCC--CeEEEEeCCCCeEEEEEecCC
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-----PLS--PPPRSTIAAAFSPD-GKTLASTHGD--HTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-----~L~--gH~~~VtslafSPD-G~~LaSgS~D--gtVrVWDl~tg~~l~~l~gH~  149 (768)
                      ....|+++..+|.+++|..+.+     ++.  .-...+..+.-++. ...+++|+..  ..++|||++..+.+..-+.-.
T Consensus       114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp  193 (412)
T KOG3881|consen  114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP  193 (412)
T ss_pred             cCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence            4677899999999999999844     211  12245677777774 4455668877  889999999885544333211


Q ss_pred             ---------CCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCC-cEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEE
Q 004203          150 ---------RTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGH-KLY  215 (768)
Q Consensus       150 ---------g~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~sg-~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~  215 (768)
                               -.++.+.|-+ +  ...|++++.-+.|++||.+.+ +++..+. .+.+++++...|+|++|+++... .+.
T Consensus       194 nD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~  272 (412)
T KOG3881|consen  194 NDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA  272 (412)
T ss_pred             CccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence                     1245678877 5  789999999999999999975 4566665 46789999999999999999854 499


Q ss_pred             EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (768)
Q Consensus       216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~  260 (768)
                      .+|++.+....  ..+.+-.+.|++|..+|.+++++.++.+..++
T Consensus       273 ~FD~r~~kl~g--~~~kg~tGsirsih~hp~~~~las~GLDRyvR  315 (412)
T KOG3881|consen  273 KFDLRGGKLLG--CGLKGITGSIRSIHCHPTHPVLASCGLDRYVR  315 (412)
T ss_pred             eecccCceeec--cccCCccCCcceEEEcCCCceEEeeccceeEE
Confidence            99999987644  23555678999999999999766666543333

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.56  E-value=8.8e-08  Score=99.59  Aligned_cols=94  Identities=24%  Similarity=0.321  Sum_probs=81.6

Q ss_pred             EEEeCCCeEEEEeCCCC--C------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203           85 ASWVEAESLHHLRPKYC--P------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (768)
Q Consensus        85 vSgs~DgsIrlWd~~t~--~------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa  156 (768)
                      ++++.+..+..|++...  .      +.-..-.|..+..-||++.+|++++|+.||||+.++.+.+..++-|.+.|++++
T Consensus       221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA  300 (323)
T KOG0322|consen  221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA  300 (323)
T ss_pred             cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence            45666777888887643  1      122344688999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCEEEEEeCCCeEEEEEC
Q 004203          157 FHPLNPTIIASGSLDHEVRLWNA  179 (768)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl  179 (768)
                      |+| +..++|.++.|..|.+|++
T Consensus       301 fsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  301 FSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             eCC-CCchhhhccCCceEEeeec
Confidence            999 8899999999999999997

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.56  E-value=3.5e-06  Score=95.32  Aligned_cols=189  Identities=12%  Similarity=0.168  Sum_probs=133.7

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC--CCCCCC-----------------------------------------CeE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCP--LSPPPR-----------------------------------------STI  111 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~--L~gH~~-----------------------------------------~Vt  111 (768)
                      -...|+.-.+++|...-.|++||+..-.  |.-|..                                         .-.
T Consensus        58 k~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GR  137 (703)
T KOG2321|consen   58 KVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGR  137 (703)
T ss_pred             EecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCc
Confidence            3344555566778888889999986431  111111                                         123


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-
Q 004203          112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-  190 (768)
Q Consensus       112 slafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h-  190 (768)
                      +++++.-..-|+.++....|+.++++.|..+..|....+.++++..++ ...+|++|+.||.|-.||.++...+.++.. 
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~  216 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAA  216 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecc
Confidence            344443222344555566899999999999999988889999999999 888999999999999999999877666532 


Q ss_pred             ------CC-----CeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecC--CCCeEEEEEccC--CCeEEEEE
Q 004203          191 ------YR-----PIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPH--AAPLLLTA  254 (768)
Q Consensus       191 ------~~-----~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPD--G~~LlaS~  254 (768)
                            .+     .|+++.|+.||-.+++|+. |.+.|||+++.+.    ..+..|  .-+|..+.|.+.  +..+++.-
T Consensus       217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p----l~~kdh~~e~pi~~l~~~~~~~q~~v~S~D  292 (703)
T KOG2321|consen  217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP----LLVKDHGYELPIKKLDWQDTDQQNKVVSMD  292 (703)
T ss_pred             cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc----eeecccCCccceeeecccccCCCceEEecc
Confidence                  22     3899999999999999985 5599999999864    334455  467889999776  33343332


Q ss_pred             e----eCCcCCCCcceeE
Q 004203          255 E----VNDLDSSESSLTL  268 (768)
Q Consensus       255 s----vwdl~sg~~~~~L  268 (768)
                      .    +|+-..+.....+
T Consensus       293 k~~~kiWd~~~Gk~~asi  310 (703)
T KOG2321|consen  293 KRILKIWDECTGKPMASI  310 (703)
T ss_pred             hHHhhhcccccCCceeec
Confidence            2    7776666554443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.56  E-value=3.4e-05  Score=85.11  Aligned_cols=147  Identities=14%  Similarity=0.211  Sum_probs=101.4

Q ss_pred             CCeEEEEECCCCCEEEEEeC----CCeEEEEeCCC--CeE--EEEEecCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEE
Q 004203          108 RSTIAAAFSPDGKTLASTHG----DHTVKIIDCQT--GSC--LKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWN  178 (768)
Q Consensus       108 ~~VtslafSPDG~~LaSgS~----DgtVrVWDl~t--g~~--l~~l~gH~g~V~sVafSP~dg~lLaSgS~-DgtVrLWD  178 (768)
                      .....++++|++++|++...    ++.|..|++..  ++.  +............++++| ++++|+.+.. +++|.+++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEE
Confidence            44567899999999999977    57899998766  332  333332344566789999 8888888764 88999999


Q ss_pred             CCC-CcEEEE---ec-----------CCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcc-cc-CCeEeecCCCCeE
Q 004203          179 AST-AECIGS---RD-----------FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREE-TS-SPRIVLRTRRSLR  239 (768)
Q Consensus       179 l~s-g~~i~~---l~-----------h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~-~~-~~~~l~~h~~~V~  239 (768)
                      +.. |.....   +.           ......++.|+|||++|++..  .|+|++|+++.... .. ............+
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            987 444332   21           124577899999999999887  45699999987652 11 1112234467789


Q ss_pred             EEEEccCCCeEEEEEe
Q 004203          240 AVHFHPHAAPLLLTAE  255 (768)
Q Consensus       240 sVaFSPDG~~LlaS~s  255 (768)
                      .+.|+|||+++.+..+
T Consensus       196 h~~f~pdg~~~Yv~~e  211 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNE  211 (345)
T ss_dssp             EEEE-TTSSEEEEEET
T ss_pred             EEEEcCCcCEEEEecC
Confidence            9999999998877664

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.53  E-value=1.6e-06  Score=103.38  Aligned_cols=175  Identities=14%  Similarity=0.126  Sum_probs=136.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCC-----eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPL---SPPPRS-----TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L---~gH~~~-----VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      ...+.++.+..++.+-+||.....+   ..+...     ..-+-++++.-++++|+--+.|.+|+....+.-..+.||.+
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG  176 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG  176 (967)
T ss_pred             hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence            3567788888899999999876521   123322     33455677778999999999999999874433346899999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE--EecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccC
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSS  227 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~--~l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~  227 (768)
                      .+..+.|+- |+.++++.|.|.++|+|++++.+...  .++|...+..++|+|+  .+++++.| +.++|+.+..+..  
T Consensus       177 ~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~--  251 (967)
T KOG0974|consen  177 SIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE--  251 (967)
T ss_pred             ceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh--
Confidence            999999999 99999999999999999999988765  3789999999999998  88888855 5999976655432  


Q ss_pred             CeEeecC-CCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203          228 PRIVLRT-RRSLRAVHFHPHAAPLLLTAEVNDLD  260 (768)
Q Consensus       228 ~~~l~~h-~~~V~sVaFSPDG~~LlaS~svwdl~  260 (768)
                        .+.+| .+.++.+..+++...+++.+.+-.++
T Consensus       252 --~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  252 --VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK  283 (967)
T ss_pred             --hhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence              35555 56799999998888777766644443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.46  E-value=2.2e-06  Score=90.54  Aligned_cols=148  Identities=15%  Similarity=0.057  Sum_probs=116.9

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC-CCeEEEE-Eec
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ-TGSCLKV-LHG  147 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~-tg~~l~~-l~g  147 (768)
                      .+..+..+++...+|.+.+-+....      +.++|.-.+.-+.|+. +.+.+++|++|+.+.-||++ .++.+.. .+-
T Consensus       129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv  208 (339)
T KOG0280|consen  129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV  208 (339)
T ss_pred             eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee
Confidence            3456667888888888875554432      5678999999999998 66799999999999999998 3444433 566


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CCcEEEEecCCCCeEEEEEcCCCC--EEEEEECCeEEEEEcCCCcc
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGSRDFYRPIASIAFHASGE--LLAVASGHKLYIWRYNMREE  224 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-sg~~i~~l~h~~~V~svafSPDG~--~LatgSdd~I~IWDl~t~~~  224 (768)
                      |...|.++.-+|..+.++++|+.|..|++||.+ -++++......+.|..+.++|.-.  .|+++-.++.+|.+......
T Consensus       209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~  288 (339)
T KOG0280|consen  209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL  288 (339)
T ss_pred             eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccccc
Confidence            888899999998788899999999999999999 578887777789999999999543  45555577788888766544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=3.7e-06  Score=98.93  Aligned_cols=180  Identities=13%  Similarity=0.041  Sum_probs=136.5

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCC--C------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 004203           72 QIFEAGRDARRGLASWVEAESLHHLRPKY--C------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK  143 (768)
Q Consensus        72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t--~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~  143 (768)
                      ...++....+..++++..||.|.+|.-..  .      .+.-|...|.+++|++||.+|++|+..+.+.+|.+++++ .+
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kq  286 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQ  286 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cc
Confidence            44566677899999999999999998654  1      356799999999999999999999999999999999998 56


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec------------CCCCeEEEEEcCCCCEEEEEE-
Q 004203          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD------------FYRPIASIAFHASGELLAVAS-  210 (768)
Q Consensus       144 ~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~------------h~~~V~svafSPDG~~LatgS-  210 (768)
                      .+.--++.|..+.++| |+++.+....|+.|.+....+-+...++.            ..+-.+.++++|.-+.++..+ 
T Consensus       287 fLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~  365 (792)
T KOG1963|consen  287 FLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH  365 (792)
T ss_pred             cccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence            6666788999999999 99999999999999999886655444432            123456788999544444444 


Q ss_pred             CCeEEEEEcCCCccccCCeEeec--------CCCCeEEEEEccCCCeEEEE
Q 004203          211 GHKLYIWRYNMREETSSPRIVLR--------TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       211 dd~I~IWDl~t~~~~~~~~~l~~--------h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .+.|++||+-+............        +...++.++++-.|.++++.
T Consensus       366 ~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~  416 (792)
T KOG1963|consen  366 PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL  416 (792)
T ss_pred             CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence            56799999987765432222111        12357788888888866553

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.44  E-value=6.8e-06  Score=86.92  Aligned_cols=163  Identities=13%  Similarity=0.160  Sum_probs=121.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCC----CCC---CCC---CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE--EEecCCC
Q 004203           83 GLASWVEAESLHHLRPKYCP----LSP---PPR---STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLHGHRR  150 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~~----L~g---H~~---~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--~l~gH~g  150 (768)
                      .++....+|.|.++......    |.+   -+-   ...++.|++.+..+++.-.+|.+.+-+.......+  .++.|.-
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~  166 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF  166 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence            45566677788877765431    221   111   24588999999999999999999977765555444  7899999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEE--ecCCCCeEEEEEcC-CCCEEEEEECCe-EEEEEcCCCccc
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGS--RDFYRPIASIAFHA-SGELLAVASGHK-LYIWRYNMREET  225 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s-g~~i~~--l~h~~~V~svafSP-DG~~LatgSdd~-I~IWDl~t~~~~  225 (768)
                      ..+...|+-.+.+++++|+.|+.+.-||++. ++.+..  ..|...|.++.-+| +..+|++|+.|. |++||.++... 
T Consensus       167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-  245 (339)
T KOG0280|consen  167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-  245 (339)
T ss_pred             eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC-
Confidence            9999999988889999999999999999994 334333  34778888887776 577999999554 99999997654 


Q ss_pred             cCCeEeecCCCCeEEEEEccCCC
Q 004203          226 SSPRIVLRTRRSLRAVHFHPHAA  248 (768)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPDG~  248 (768)
                        |.....-.+.|+.+.++|.-.
T Consensus       246 --Pl~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  246 --PLFKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             --ccccCccccceEEEEecchhh
Confidence              223334458899999999654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=2.2e-06  Score=93.37  Aligned_cols=123  Identities=15%  Similarity=0.190  Sum_probs=107.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE-EecCCCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~g~V~  153 (768)
                      ....++++..-+.+++||...+     ++.--..+|+++...|+|++|++|..-+.+..||+++++.... +++..+.|+
T Consensus       215 ~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsir  294 (412)
T KOG3881|consen  215 PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIR  294 (412)
T ss_pred             CCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcc
Confidence            3788999999999999999876     2445577899999999999999999999999999999998876 899999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCC
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG  203 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG  203 (768)
                      ++..+| ...++++++-|..|||+|+++.+.+.........+++-+.++-
T Consensus       295 sih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  295 SIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV  343 (412)
T ss_pred             eEEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence            999999 8899999999999999999997777666666777777776543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.41  E-value=0.00011  Score=81.20  Aligned_cols=180  Identities=16%  Similarity=0.172  Sum_probs=113.9

Q ss_pred             EEEecCCCEEEEEe-CCCeEEEEeCCCC-CC-----------------CCCCCCeEEEEECCCCCEEEEEeC-CCeEEEE
Q 004203           75 EAGRDARRGLASWV-EAESLHHLRPKYC-PL-----------------SPPPRSTIAAAFSPDGKTLASTHG-DHTVKII  134 (768)
Q Consensus        75 ~a~~d~g~~LvSgs-~DgsIrlWd~~t~-~L-----------------~gH~~~VtslafSPDG~~LaSgS~-DgtVrVW  134 (768)
                      .+...+++.|+... .++.|.++++... .+                 ..-....+++.|+|||+++++... ...|++|
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            33444555555554 5777888877642 10                 112345789999999999887643 4589999


Q ss_pred             eCCCCe--E--EEEEe-cCCCCcEEEEEccCCCCEEEE-EeCCCeEEEEECC--CCcEE--EEec-----C--CCCeEEE
Q 004203          135 DCQTGS--C--LKVLH-GHRRTPWVVRFHPLNPTIIAS-GSLDHEVRLWNAS--TAECI--GSRD-----F--YRPIASI  197 (768)
Q Consensus       135 Dl~tg~--~--l~~l~-gH~g~V~sVafSP~dg~lLaS-gS~DgtVrLWDl~--sg~~i--~~l~-----h--~~~V~sv  197 (768)
                      +++...  .  ...+. ..+...+.+.|+| ++++++. ...+++|.++++.  +++..  ..+.     .  ......+
T Consensus       172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  250 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI  250 (345)
T ss_dssp             EE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred             EEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence            987654  2  12222 3345688999999 7776655 4567889999988  44332  2221     1  1257789


Q ss_pred             EEcCCCCEEEEEEC--CeEEEEEcCCC-ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          198 AFHASGELLAVASG--HKLYIWRYNMR-EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       198 afSPDG~~LatgSd--d~I~IWDl~t~-~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +++|||++|+++..  +.|.+|+++.. ........+.......+.+.|+|+|++|+++..
T Consensus       251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence            99999999999884  45999999543 222211222223556899999999998888764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.38  E-value=6.6e-06  Score=93.51  Aligned_cols=141  Identities=11%  Similarity=0.095  Sum_probs=121.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPL------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L------~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      .+...++-|...|.|.+++...+++      -.|.+.|.++.++.+-..|++++.|+.+..|+..+++.+..+++....+
T Consensus        68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~  147 (541)
T KOG4547|consen   68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV  147 (541)
T ss_pred             CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence            3556777888899999999887632      3799999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCC-----CCEEEEEECC--eEEEEEcCCC
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS-----GELLAVASGH--KLYIWRYNMR  222 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPD-----G~~LatgSdd--~I~IWDl~t~  222 (768)
                      .+++.+| |+..+++++  ++|++||+++++.+.+| +|.++|.++.|.-+     |+++.++...  .+.+|-++..
T Consensus       148 ~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  148 SSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             ceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            9999999 899999887  57999999999999987 58889999999887     7777776643  3888877663

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.37  E-value=3.1e-05  Score=86.14  Aligned_cols=160  Identities=13%  Similarity=0.071  Sum_probs=124.7

Q ss_pred             CCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCC-eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203           89 EAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (768)
Q Consensus        89 ~DgsIrlWd~~t~--~L~gH~~~VtslafSPDG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL  165 (768)
                      ..|+..+.+...+  ...+|.+.|.=..+.-+++-++.|..|| .+-|||.++++. +.+.+.-+.|..+..+| +|+.+
T Consensus       339 SRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~-dGK~~  416 (668)
T COG4946         339 SRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSP-DGKKV  416 (668)
T ss_pred             ecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcC-CCcEE
Confidence            3455555555433  2347888899999999999999999999 899999998875 44555677899999999 99999


Q ss_pred             EEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC-C----eEEEEEcCCCccccCCeEeecCCCCeE
Q 004203          166 ASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-H----KLYIWRYNMREETSSPRIVLRTRRSLR  239 (768)
Q Consensus       166 aSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd-d----~I~IWDl~t~~~~~~~~~l~~h~~~V~  239 (768)
                      +.+.....|.+.|+.+|.....-. ..+-|+.++|||+++++|.+-- +    .|+++|+..++...    +......-.
T Consensus       417 vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~----vTT~ta~Df  492 (668)
T COG4946         417 VVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD----VTTPTAYDF  492 (668)
T ss_pred             EEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE----ecCCccccc
Confidence            998888899999999998765533 5678999999999999999873 2    29999999876432    333344456


Q ss_pred             EEEEccCCCeEEEEE
Q 004203          240 AVHFHPHAAPLLLTA  254 (768)
Q Consensus       240 sVaFSPDG~~LlaS~  254 (768)
                      +-+|.|||++|..-+
T Consensus       493 sPaFD~d~ryLYfLs  507 (668)
T COG4946         493 SPAFDPDGRYLYFLS  507 (668)
T ss_pred             CcccCCCCcEEEEEe
Confidence            778999999876544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.36  E-value=1.9e-05  Score=87.82  Aligned_cols=131  Identities=18%  Similarity=0.141  Sum_probs=110.9

Q ss_pred             CCCEEEEEeCCC-eEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAE-SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~Dg-sIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      +...++-+..|+ .+.++|..+++   +.+.-+.|.++..++||++++.+-..+.|.++|+++|+....=+...+-|..+
T Consensus       370 ~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf  449 (668)
T COG4946         370 DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDF  449 (668)
T ss_pred             CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEE
Confidence            445777888888 89999999874   56778899999999999999999999999999999998766656667789999


Q ss_pred             EEccCCCCEEEEEeCCC----eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 004203          156 RFHPLNPTIIASGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG  211 (768)
Q Consensus       156 afSP~dg~lLaSgS~Dg----tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd  211 (768)
                      .||| +++++|.+--+|    .|+|+|+..++..........-.+-+|.||+++|..-+.
T Consensus       450 ~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         450 DWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             EEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence            9999 999999987776    799999999988777655555567789999999988763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.30  E-value=0.0017  Score=70.86  Aligned_cols=144  Identities=15%  Similarity=0.190  Sum_probs=103.5

Q ss_pred             EEEEECCCCCEEEEEeC-CCeEEEEeCCC-CeEE--EEEecCCCC----------cEEEEEccCCCCEEEEEeC-CCeEE
Q 004203          111 IAAAFSPDGKTLASTHG-DHTVKIIDCQT-GSCL--KVLHGHRRT----------PWVVRFHPLNPTIIASGSL-DHEVR  175 (768)
Q Consensus       111 tslafSPDG~~LaSgS~-DgtVrVWDl~t-g~~l--~~l~gH~g~----------V~sVafSP~dg~lLaSgS~-DgtVr  175 (768)
                      +-++++++|++++++.. -+.|.++-+++ |...  ..+..|.+.          +....+.| +++++++.+. --.|.
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~  170 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIF  170 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEE
Confidence            78999999999999877 68899998865 5432  122345555          88889999 8988888654 22599


Q ss_pred             EEECCCCcEEEE----ecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcc-ccCCeEe------ecCCCCeEEEE
Q 004203          176 LWNASTAECIGS----RDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREE-TSSPRIV------LRTRRSLRAVH  242 (768)
Q Consensus       176 LWDl~sg~~i~~----l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~-~~~~~~l------~~h~~~V~sVa  242 (768)
                      +|++..|+....    ++....-.-|.|+|++++.++.+  +++|-+|.++.... ......+      .....+..+|.
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            999998765433    23344567899999999988888  57799999987421 1100011      12356788999


Q ss_pred             EccCCCeEEEEEe
Q 004203          243 FHPHAAPLLLTAE  255 (768)
Q Consensus       243 FSPDG~~LlaS~s  255 (768)
                      .+|||++|.++-.
T Consensus       251 is~dGrFLYasNR  263 (346)
T COG2706         251 ISPDGRFLYASNR  263 (346)
T ss_pred             ECCCCCEEEEecC
Confidence            9999998877654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=1.9e-05  Score=89.44  Aligned_cols=148  Identities=17%  Similarity=0.292  Sum_probs=105.9

Q ss_pred             CCCeEEEEeCC--CCCCC-CCCCCeEEEEECCCCCEEEEEeC--CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCC
Q 004203           89 EAESLHHLRPK--YCPLS-PPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT  163 (768)
Q Consensus        89 ~DgsIrlWd~~--t~~L~-gH~~~VtslafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~  163 (768)
                      -+.++.+.+++  .+.+. .-.++|+++.|+|+|+.|+++-+  =..+.|||++ ++.+..|  ..++=+++-|+| .|+
T Consensus       249 GEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~  324 (566)
T KOG2315|consen  249 GEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGN  324 (566)
T ss_pred             ccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCC
Confidence            34567777766  22233 23789999999999998887655  5689999986 5555555  356677899999 999


Q ss_pred             EEEEEeCC---CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCCccccCCeEeec
Q 004203          164 IIASGSLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       164 lLaSgS~D---gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-------dd~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      +|+.++-+   |.+-+||+.+.+++..+.... -+-+.|+|||+++++++       |++++||++.....-.     ..
T Consensus       325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-----~~  398 (566)
T KOG2315|consen  325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-----KM  398 (566)
T ss_pred             EEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-----hh
Confidence            88887654   689999999988877765443 35679999999999886       4669999996653211     11


Q ss_pred             CCCCeEEEEEccC
Q 004203          234 TRRSLRAVHFHPH  246 (768)
Q Consensus       234 h~~~V~sVaFSPD  246 (768)
                      -......+.|-|-
T Consensus       399 f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  399 FKSELLQVEWRPF  411 (566)
T ss_pred             hhHhHhheeeeec
Confidence            1114666777663

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.25  E-value=0.00095  Score=74.20  Aligned_cols=211  Identities=12%  Similarity=0.104  Sum_probs=122.7

Q ss_pred             CeEEEEeCCCCCCCC----CCCCeEEEEECCCCCEEEEEeC----------CCeEEEEeCCCCeEEEEEecCC-------
Q 004203           91 ESLHHLRPKYCPLSP----PPRSTIAAAFSPDGKTLASTHG----------DHTVKIIDCQTGSCLKVLHGHR-------  149 (768)
Q Consensus        91 gsIrlWd~~t~~L~g----H~~~VtslafSPDG~~LaSgS~----------DgtVrVWDl~tg~~l~~l~gH~-------  149 (768)
                      ++|.+.|..+.++.+    -..+ ..+ +||||+.|+.+..          +..|.+||..+++.+..+.-..       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            677777877664321    1111 234 9999999998766          7899999999999998886321       


Q ss_pred             CCcEEEEEccCCCCEEEEEe-C-CCeEEEEECCCCcEEEEecCCCC--------------------------------eE
Q 004203          150 RTPWVVRFHPLNPTIIASGS-L-DHEVRLWNASTAECIGSRDFYRP--------------------------------IA  195 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS-~-DgtVrLWDl~sg~~i~~l~h~~~--------------------------------V~  195 (768)
                      .....++++| |+++++... . +..|-+.|+.+++.+..+...+.                                ..
T Consensus       105 ~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       105 TYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             CccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence            1233689999 888777655 3 68999999999877554321110                                00


Q ss_pred             E--E------------EEcC-CCCEEEEEECCeEEEEEcCCCcccc-CCeEeec--------CCCCeEEEEEccCCCeEE
Q 004203          196 S--I------------AFHA-SGELLAVASGHKLYIWRYNMREETS-SPRIVLR--------TRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       196 s--v------------afSP-DG~~LatgSdd~I~IWDl~t~~~~~-~~~~l~~--------h~~~V~sVaFSPDG~~Ll  251 (768)
                      .  +            .|.+ ||+++.+...+.|++.|+...+... .+.....        ....+.-++++|+++++.
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence            0  0            1223 6777777777778888864432211 1111110        123344588888888776


Q ss_pred             EEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCC-EEEEE
Q 004203          252 LTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE-RISLQ  321 (768)
Q Consensus       252 aS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~-rIv~~  321 (768)
                      +...-..-.             -...+.+.+.+.+..+........    ...+.+...||+||+ +++..
T Consensus       264 V~~~~~~~~-------------thk~~~~~V~ViD~~t~kvi~~i~----vG~~~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       264 LLADQRAKW-------------THKTASRFLFVVDAKTGKRLRKIE----LGHEIDSINVSQDAKPLLYAL  317 (352)
T ss_pred             EEecCCccc-------------cccCCCCEEEEEECCCCeEEEEEe----CCCceeeEEECCCCCeEEEEe
Confidence            644210000             001133345555544333222111    123567889999999 66654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.24  E-value=5.8e-06  Score=90.43  Aligned_cols=100  Identities=18%  Similarity=0.314  Sum_probs=82.0

Q ss_pred             eCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE-EEecCCCCcEEEEEccCCCC
Q 004203           88 VEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPT  163 (768)
Q Consensus        88 s~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~g~V~sVafSP~dg~  163 (768)
                      ++...+.+|+...+   .+.||-.-+++++|+||+++|+++..|..|||-....--.+. -.-||+.-|..++.-+  +.
T Consensus       129 gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~  206 (390)
T KOG3914|consen  129 GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NY  206 (390)
T ss_pred             CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--Cc
Confidence            34455777776533   467999999999999999999999999999998876544443 3468999999999876  66


Q ss_pred             EEEEEeCCCeEEEEECCCCcEEEEec
Q 004203          164 IIASGSLDHEVRLWNASTAECIGSRD  189 (768)
Q Consensus       164 lLaSgS~DgtVrLWDl~sg~~i~~l~  189 (768)
                      .|+|++.|++|++||+++|+++.++.
T Consensus       207 ~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  207 LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eeeecCCCCcEEEEecccCCcccccc
Confidence            69999999999999999999887654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.22  E-value=4.7e-05  Score=86.64  Aligned_cols=210  Identities=17%  Similarity=0.180  Sum_probs=126.1

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeC---C-CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC--eEEE
Q 004203          103 LSPPPRSTIAAAFSPDGKTLASTHG---D-HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH--EVRL  176 (768)
Q Consensus       103 L~gH~~~VtslafSPDG~~LaSgS~---D-gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg--tVrL  176 (768)
                      +..-...+..-+|+|+++.++..+.   . ..++++|+++++....+. ..+.-...+|+|++.+++++..+|+  .|++
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            3444556788899999998765532   3 469999999987655544 2222334699994444555566666  6888


Q ss_pred             EECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe----EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK----LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       177 WDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~----I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                      .|+.++...+.....+.-..-.|+|||+.|++.++..    |.++|.+......    +......-..-.|+|||++++.
T Consensus       267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r----iT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR----LTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE----eeccCCCCcCccCCCCCCEEEE
Confidence            8998887555333333334678999999999999643    8888887776532    2222222227889999999988


Q ss_pred             EEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceE
Q 004203          253 TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRT  332 (768)
Q Consensus       253 S~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~  332 (768)
                      ....    .+.  .              .+...+..++........    ..-.-.|.|+++|+.|.+-.... .++.+.
T Consensus       343 ~~~~----~g~--~--------------~i~~~~~~~~~~~~~lt~----~~~~e~ps~~~ng~~i~~~s~~~-~~~~l~  397 (425)
T COG0823         343 ESSS----GGQ--W--------------DIDKNDLASGGKIRILTS----TYLNESPSWAPNGRMIMFSSGQG-GGSVLS  397 (425)
T ss_pred             Eecc----CCc--e--------------eeEEeccCCCCcEEEccc----cccCCCCCcCCCCceEEEeccCC-CCceEE
Confidence            7732    111  0              111111111111111111    01111688999999999976655 455555


Q ss_pred             EeccCCCcee
Q 004203          333 QQSLRSSSSV  342 (768)
Q Consensus       333 ~~~~~ss~~~  342 (768)
                      .....+....
T Consensus       398 ~~s~~g~~~~  407 (425)
T COG0823         398 LVSLDGRVSR  407 (425)
T ss_pred             EeeccceeEE
Confidence            5555544443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.13  E-value=1e-05  Score=86.62  Aligned_cols=170  Identities=13%  Similarity=0.096  Sum_probs=116.6

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~L---~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      .+..++.+++.+.- .+-+-|.++-++   -.--..|.-+.|..|.-+++.+ ..|+.|.+|++...+--..+......+
T Consensus        16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agl   94 (447)
T KOG4497|consen   16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGL   94 (447)
T ss_pred             ECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcc
Confidence            34567777777655 555666654321   1113457778899887776654 568899999998888777777777789


Q ss_pred             EEEEEccCCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe----EEEEEcCCCccccC
Q 004203          153 WVVRFHPLNP-TIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK----LYIWRYNMREETSS  227 (768)
Q Consensus       153 ~sVafSP~dg-~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~----I~IWDl~t~~~~~~  227 (768)
                      ..++||| || .++.+..-|-.|.+|.+.+.+....-.....+..++|+|||++.+..+...    +.|..-..-.... 
T Consensus        95 s~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~-  172 (447)
T KOG4497|consen   95 SSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLK-  172 (447)
T ss_pred             eeeeECC-CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHH-
Confidence            9999999 66 666677789999999999877665543445668899999999998887422    3332111111111 


Q ss_pred             CeEeecCCCCeEEEEEccCCCeEE
Q 004203          228 PRIVLRTRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPDG~~Ll  251 (768)
                        ...-..-..+.+.|+|||..++
T Consensus       173 --~f~~dT~DltgieWsPdg~~la  194 (447)
T KOG4497|consen  173 --EFKLDTIDLTGIEWSPDGNWLA  194 (447)
T ss_pred             --hcCCCcccccCceECCCCcEEE
Confidence              1112234678899999999776

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.09  E-value=0.00013  Score=76.64  Aligned_cols=175  Identities=9%  Similarity=-0.018  Sum_probs=118.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCC--eEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eE-EE-EEecCCCC
Q 004203           79 DARRGLASWVEAESLHHLRPKYC--PLSPPPRS--TIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SC-LK-VLHGHRRT  151 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~--~L~gH~~~--VtslafSPDG~~LaSgS~DgtVrVWDl~tg-~~-l~-~l~gH~g~  151 (768)
                      +....+.-++.|.++++.+++..  .+.-|...  +.++.+++|++++++.+....|.+|.++.. +. ++ ........
T Consensus       126 d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~  205 (344)
T KOG4532|consen  126 DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH  205 (344)
T ss_pred             ccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence            34556667778888888877655  34455554  889999999999999999999999988653 22 23 22223334


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEE-----ecCCCCeEEEEEcCCCC-EEEEEEC--CeEEEEEcCCC
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-----RDFYRPIASIAFHASGE-LLAVASG--HKLYIWRYNMR  222 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~-----l~h~~~V~svafSPDG~-~LatgSd--d~I~IWDl~t~  222 (768)
                      =.+..|+. ....+|++..||++.|||++.-.. ...     -.|.+.+..+.|++-|. -|..-+.  ..+++.|+++.
T Consensus       206 gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  206 GFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             ceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence            45679998 888999999999999999987432 222     23788999999999775 2333343  45999999988


Q ss_pred             ccccCCe----EeecCC-CCeEEEEEccCCCeEEEEE
Q 004203          223 EETSSPR----IVLRTR-RSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       223 ~~~~~~~----~l~~h~-~~V~sVaFSPDG~~LlaS~  254 (768)
                      ...+...    ....|. ..|..-.|+.++..+.+..
T Consensus       285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             ceeeEEecCccccccccccccccccccCCCccccccc
Confidence            6543110    111222 2266666766665444433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.07  E-value=1.1e-05  Score=59.95  Aligned_cols=39  Identities=31%  Similarity=0.775  Sum_probs=36.9

Q ss_pred             CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (768)
Q Consensus       139 g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (768)
                      |+++..+++|.+.|++++|+| ++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            467899999999999999999 899999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=3.2e-05  Score=86.33  Aligned_cols=154  Identities=16%  Similarity=0.194  Sum_probs=116.5

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-ecCCCCcEEEEEccCCC-CEEEEEeCCCeEEEEEC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNP-TIIASGSLDHEVRLWNA  179 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~g~V~sVafSP~dg-~lLaSgS~DgtVrLWDl  179 (768)
                      +|.+|.+.|..+.|+..|..|++++.|..|.+||...++....| .||...|....|-|..+ .-+++.+.||.|++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            57899999999999999999999999999999999988876555 57888888888887544 46888999999999887


Q ss_pred             CCCcEEE-E---ecCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccccCCeEeecCCC---CeEEEEEccCCCeE
Q 004203          180 STAECIG-S---RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRR---SLRAVHFHPHAAPL  250 (768)
Q Consensus       180 ~sg~~i~-~---l~h~~~V~svafSPDG~-~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~---~V~sVaFSPDG~~L  250 (768)
                      .....+. +   -.|.++|..++.-|+.. -|.+++.+. +.-+|++.............+..   ....++.+|...+.
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence            6433322 2   35999999999999876 445555444 88899988765432222222233   57899999988866


Q ss_pred             EEEEe
Q 004203          251 LLTAE  255 (768)
Q Consensus       251 laS~s  255 (768)
                      ++.+.
T Consensus       297 faVgG  301 (559)
T KOG1334|consen  297 FAVGG  301 (559)
T ss_pred             cccCC
Confidence            55554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.00  E-value=4.1e-05  Score=83.91  Aligned_cols=114  Identities=15%  Similarity=0.181  Sum_probs=83.7

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-  187 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-  187 (768)
                      .|..+..+......-..++.+.+.+|....+.+ ..+-||-.-+..|+|+| |+++|+++.+|..|++-....--.+.. 
T Consensus       112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesf  189 (390)
T KOG3914|consen  112 AISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESF  189 (390)
T ss_pred             eeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhh
Confidence            344444443333333445566677777665554 44458999999999999 889999999999999988876665655 


Q ss_pred             -ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccc
Q 004203          188 -RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET  225 (768)
Q Consensus       188 -l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~  225 (768)
                       ++|..-|..++.-++.. |++++ |+++++||+.+++..
T Consensus       190 clGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  190 CLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             ccccHhheeeeeeccCce-eeecCCCCcEEEEecccCCcc
Confidence             57999999999887655 55655 556999999999864

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.98  E-value=0.00083  Score=70.78  Aligned_cols=168  Identities=13%  Similarity=0.006  Sum_probs=112.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC--C---CCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP--L---SPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~--L---~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ....|+.++..|...+|...+.+  +   ..|...|+-+.=..| .-.+..++.|.++++.+++.+.....+....-.+.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            55678888888899999887552  1   123332221111111 23466789999999999876543333222222378


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEE---ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcccc--
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS---RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETS--  226 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~---l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~--  226 (768)
                      ++.+++ |++++++.++...|.+|.+.... .+..   ....+.-.+..|+.....+|++.. +.+.|||++......  
T Consensus       163 s~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~  241 (344)
T KOG4532|consen  163 SLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE  241 (344)
T ss_pred             eeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence            899999 99999999999999999997532 2222   123445567889999999999995 559999998765422  


Q ss_pred             CCeEeecCCCCeEEEEEccCCC
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAA  248 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~  248 (768)
                      +......|.+.++.+.|++-|.
T Consensus       242 ~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  242 ISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             hcccCCCCCCceEEEEecCCCc
Confidence            1112344789999999998664

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.97  E-value=0.00026  Score=76.60  Aligned_cols=147  Identities=12%  Similarity=0.153  Sum_probs=104.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE---EEEEecC-----CCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLHGH-----RRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~---l~~l~gH-----~g~V~sVafSP~dg~lLaSgS~DgtVrL  176 (768)
                      .|+--|+++.++.|+..++++ +|-.|.+|+++--..   +..++.+     +.-|++..|||..-+.++..+..|+|+|
T Consensus       162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            578889999999999998876 567899999864321   2333333     2457888999988889999999999999


Q ss_pred             EECCCCcEE----EEec-------------CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCC----
Q 004203          177 WNASTAECI----GSRD-------------FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR----  235 (768)
Q Consensus       177 WDl~sg~~i----~~l~-------------h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~----  235 (768)
                      .|++....-    +.+.             .-..|..+.|+++|+++++-..-+|++||+.......  ....-|.    
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv--~t~~vh~~lr~  318 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPV--ETYPVHEYLRS  318 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcc--eEEeehHhHHH
Confidence            999954321    1111             1235788999999999998888889999996554321  1222221    


Q ss_pred             --------C---CeEEEEEccCCCeEEEEE
Q 004203          236 --------R---SLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       236 --------~---~V~sVaFSPDG~~LlaS~  254 (768)
                              .   .-..++|+.++.++++++
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGs  348 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGS  348 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEeccc
Confidence                    2   235788999998666554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.96  E-value=7.4e-06  Score=96.09  Aligned_cols=210  Identities=16%  Similarity=0.137  Sum_probs=140.3

Q ss_pred             CCcceecccccccccCCCccccceeecCCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCC
Q 004203           33 SRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPR  108 (768)
Q Consensus        33 sk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~  108 (768)
                      ++|..|++....+..-+...+..+.+.+.+.       .....+.+.+...|+.|.-.|.|++++..++    ...+|..
T Consensus      1072 ~~y~gV~g~~~dr~~IFSRFr~w~~frd~~~-------~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S 1144 (1516)
T KOG1832|consen 1072 SFYSGVHGNRRDRQFIFSRFRSWRSFRDETA-------LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS 1144 (1516)
T ss_pred             CcccccccCcccchhhHhhcccchhhhcccc-------ceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc
Confidence            3455555555555444444444444443331       2333444557888999999999999999988    3668999


Q ss_pred             CeEEEEECCCCCEEEEEeCCC--eEEEEeCCC-CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 004203          109 STIAAAFSPDGKTLASTHGDH--TVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~Dg--tVrVWDl~t-g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i  185 (768)
                      .|+-+.-+.||..+++.+.-.  ...+|++.+ +.....|.+    -.++.|+. ....-+.|..-....|||++++...
T Consensus      1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             ccccccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhh-hHHHHHhcccccceEEEecccCcHH
Confidence            999999999999887665533  578999854 455566653    34578887 4443344444456889999998776


Q ss_pred             EEe-----cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203          186 GSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (768)
Q Consensus       186 ~~l-----~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~  260 (768)
                      .++     .....-++..|+|+.+++.--+    .+||++..+.+.   .+.... .--.=.|+|+|..+++-+++||++
T Consensus      1220 ~tylt~~~~~~y~~n~a~FsP~D~LIlndG----vLWDvR~~~aIh---~FD~ft-~~~~G~FHP~g~eVIINSEIwD~R 1291 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLILNDG----VLWDVRIPEAIH---RFDQFT-DYGGGGFHPSGNEVIINSEIWDMR 1291 (1516)
T ss_pred             HHhcCcchhhhhhccccccCCCcceEeeCc----eeeeeccHHHHh---hhhhhe-ecccccccCCCceEEeechhhhhH
Confidence            552     2223347788999988765322    679999886544   111111 222335999999999999999998


Q ss_pred             CC
Q 004203          261 SS  262 (768)
Q Consensus       261 sg  262 (768)
                      +-
T Consensus      1292 TF 1293 (1516)
T KOG1832|consen 1292 TF 1293 (1516)
T ss_pred             HH
Confidence            54

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.93  E-value=5.2e-05  Score=84.74  Aligned_cols=179  Identities=16%  Similarity=0.101  Sum_probs=136.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCC-CCeE--EEEEe
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQ-TGSC--LKVLH  146 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~-----L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~-tg~~--l~~l~  146 (768)
                      ....+..|++++.|..|.+||.....     ..+|...|.-..|-|  +.+.|++++.||.|++=.+. ++.+  .+.+.
T Consensus       150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~  229 (559)
T KOG1334|consen  150 FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA  229 (559)
T ss_pred             ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc
Confidence            34578899999999999999998762     358999999999988  66789999999999998764 3433  34556


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----cCCC---CeEEEEEcCCCC-EEEEEECCe-EEEE
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYR---PIASIAFHASGE-LLAVASGHK-LYIW  217 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l----~h~~---~V~svafSPDG~-~LatgSdd~-I~IW  217 (768)
                      .|.+.|..++.-|+....|.+++.|+.+.-+|++.+.+...+    .+..   ....++.+|-.. .+++++.+. +++|
T Consensus       230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY  309 (559)
T KOG1334|consen  230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY  309 (559)
T ss_pred             cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence            799999999999988889999999999999999987654432    2223   567889999776 777777665 9999


Q ss_pred             EcCCCcccc--------CCeE-eecCCCCeEEEEEccCCCeEEEEEe
Q 004203          218 RYNMREETS--------SPRI-VLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       218 Dl~t~~~~~--------~~~~-l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |.+.-....        .+.. .....-.|++++|+.++.-++++-+
T Consensus       310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn  356 (559)
T KOG1334|consen  310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN  356 (559)
T ss_pred             cccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence            987644321        0111 1122457999999988887887765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.91  E-value=0.00048  Score=86.69  Aligned_cols=144  Identities=15%  Similarity=0.182  Sum_probs=99.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC------------CCC------CCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCe
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPL------------SPP------PRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGS  140 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L------------~gH------~~~VtslafSPDG~~La-SgS~DgtVrVWDl~tg~  140 (768)
                      ++...++...++.|++||...+..            .++      -....+++|+|||++|+ +-+.++.|++||++++.
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~  773 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG  773 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence            455566667788899998865421            111      12356799999998555 44567999999998875


Q ss_pred             EEEEEec-------------C--------CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---------
Q 004203          141 CLKVLHG-------------H--------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---------  190 (768)
Q Consensus       141 ~l~~l~g-------------H--------~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h---------  190 (768)
                      ......+             .        ......+++++ +++++++-..++.|++||..++......+.         
T Consensus       774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~  852 (1057)
T PLN02919        774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK  852 (1057)
T ss_pred             EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence            4221110             0        11345789999 888888888899999999988776544321         


Q ss_pred             -----CCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcc
Q 004203          191 -----YRPIASIAFHASGELLAVASG-HKLYIWRYNMREE  224 (768)
Q Consensus       191 -----~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~  224 (768)
                           -.....++++++|+++++-+. +.|++||+.+++.
T Consensus       853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                 124568999999986666554 4599999988764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.90  E-value=0.00092  Score=84.22  Aligned_cols=142  Identities=13%  Similarity=0.160  Sum_probs=92.2

Q ss_pred             eEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecC---------------CCCcEEEEEccCCCC-EEEEEeCCC
Q 004203          110 TIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH---------------RRTPWVVRFHPLNPT-IIASGSLDH  172 (768)
Q Consensus       110 VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH---------------~g~V~sVafSP~dg~-lLaSgS~Dg  172 (768)
                      -.+++|+| ++.++++.+.++.|++||..++... .+.+.               -.....++|+| +++ ++++-+.++
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~  762 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESS  762 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCC
Confidence            36899999 5666677778899999999887643 22221               12355699999 665 666667778


Q ss_pred             eEEEEECCCCcEEEEe-------------c-C--------CCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCe
Q 004203          173 EVRLWNASTAECIGSR-------------D-F--------YRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPR  229 (768)
Q Consensus       173 tVrLWDl~sg~~i~~l-------------~-h--------~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~  229 (768)
                      .|++||+.++......             + .        -.....++|+++|.++++-+ +++|++||..++.......
T Consensus       763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG  842 (1057)
T PLN02919        763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG  842 (1057)
T ss_pred             eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence            9999999876532211             0 0        01235789999998666555 4559999998765422000


Q ss_pred             ----------EeecCCCCeEEEEEccCCCeEEEE
Q 004203          230 ----------IVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       230 ----------~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                                .....-.....|+++++|+.+++-
T Consensus       843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD  876 (1057)
T PLN02919        843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD  876 (1057)
T ss_pred             cCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence                      001112357899999999855543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.90  E-value=1e-05  Score=94.97  Aligned_cols=163  Identities=17%  Similarity=0.158  Sum_probs=122.4

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC-CC-eEEEEEC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DH-EVRLWNA  179 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~-Dg-tVrLWDl  179 (768)
                      .+..|....+|++|+-+.++|+.|+..|.|++|++.+|.......+|+.+|+.+..+. +|..+++.+. .. -.-+|++
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhcc
Confidence            3667889999999999999999999999999999999999999999999999999999 6666655443 33 5789998


Q ss_pred             CC-CcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCC-eEeecCCCCeEEEEEccCCCeEEEEEee
Q 004203          180 ST-AECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP-RIVLRTRRSLRAVHFHPHAAPLLLTAEV  256 (768)
Q Consensus       180 ~s-g~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~-~~l~~h~~~V~sVaFSPDG~~LlaS~sv  256 (768)
                      .+ +.....+   ..-.++.|+..-+.-+.|+ .+...+||+.+....... ....+....-+.+.|+|+...++--+-.
T Consensus      1175 ~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvL 1251 (1516)
T KOG1832|consen 1175 SSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVL 1251 (1516)
T ss_pred             ccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCcee
Confidence            75 3333333   2345678887766555566 466999999998764421 1112223344788999999988888889


Q ss_pred             CCcCCCCcceeE
Q 004203          257 NDLDSSESSLTL  268 (768)
Q Consensus       257 wdl~sg~~~~~L  268 (768)
                      ||++.......+
T Consensus      1252 WDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRF 1263 (1516)
T ss_pred             eeeccHHHHhhh
Confidence            999966554433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.90  E-value=0.0031  Score=65.84  Aligned_cols=169  Identities=15%  Similarity=0.154  Sum_probs=107.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCC-CCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCeEEEEEec-----CCCCc
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPLSP-PPRSTIAAAFS-PDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-----HRRTP  152 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L~g-H~~~VtslafS-PDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-----H~g~V  152 (768)
                      .+..+++-...+.|..|+..+++... ......++++. +++ .|+.+..+ .+.++|..+++....+..     .....
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~   88 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRP   88 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCC
Confidence            44455555567788888887763221 11127788888 565 44555554 455669999876544443     23457


Q ss_pred             EEEEEccCCCCEEEEEeCC--------CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCC
Q 004203          153 WVVRFHPLNPTIIASGSLD--------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMR  222 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~D--------gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~  222 (768)
                      +.+++.| +|++.++....        +.|+.++.. ++.......-...+.++|+||++.|++..  .+.|..+|++..
T Consensus        89 ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~  166 (246)
T PF08450_consen   89 NDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD  166 (246)
T ss_dssp             EEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence            8899999 88877776543        568888887 66555555556678999999999888766  345999999754


Q ss_pred             cc-ccCCeEeec-C--CCCeEEEEEccCCCeEEE
Q 004203          223 EE-TSSPRIVLR-T--RRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       223 ~~-~~~~~~l~~-h--~~~V~sVaFSPDG~~Lla  252 (768)
                      .. ......+.. .  ....-.+++..+|+.+++
T Consensus       167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va  200 (246)
T PF08450_consen  167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA  200 (246)
T ss_dssp             TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE
T ss_pred             ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE
Confidence            33 111122222 1  224788999999985554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.84  E-value=0.00031  Score=80.08  Aligned_cols=158  Identities=14%  Similarity=0.127  Sum_probs=106.2

Q ss_pred             eEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeC-CC--eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203           92 SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHG-DH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (768)
Q Consensus        92 sIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~-Dg--tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL  165 (768)
                      .+.++++.++.   +..-.+.-..-+|+|||++|+.++. |+  .|+++|+.++...+ +..-.+.-..-.|+| ||+.+
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~i  296 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKI  296 (425)
T ss_pred             eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEE
Confidence            57888887662   2223444556789999998886654 44  57777888777444 443333333568999 77777


Q ss_pred             EEEeCC-C--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCe--EEEEEcCCCccccCCeEeecCCCCe
Q 004203          166 ASGSLD-H--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHK--LYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       166 aSgS~D-g--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~--I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      +..+.. |  .|+++|.+.+...+.....+.-..-.|+|||++|+..+  ++.  |.+.|+.++...    .........
T Consensus       297 vf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~----~~lt~~~~~  372 (425)
T COG0823         297 VFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKI----RILTSTYLN  372 (425)
T ss_pred             EEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcE----EEccccccC
Confidence            776543 3  68888888877765554444444778999999999888  444  677776665531    234444555


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004203          239 RAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~s  255 (768)
                      ..-.|.++|+.++..+.
T Consensus       373 e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         373 ESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CCCCcCCCCceEEEecc
Confidence            66789999998877664

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.81  E-value=2.7e-05  Score=57.74  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=32.1

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWD  135 (768)
                      ++.+|...|++++|+|++++|++++.|++|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4568999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=2.5e-05  Score=87.84  Aligned_cols=151  Identities=16%  Similarity=0.194  Sum_probs=109.9

Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCe
Q 004203          101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE  173 (768)
Q Consensus       101 ~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-------g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dgt  173 (768)
                      +.+.||...|..++--.+.+-|++++.|++|++|.++.       ..|..+++.|+.+|.++.|-. +-+.+++  .|+.
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CDGG  805 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--ccCc
Confidence            45789999999988877889999999999999998853       347788899999999999988 6667664  4888


Q ss_pred             EEEEECCCCcEEEEe---cCCCCeEEEEEcC--CCCEEEEEE--CCeEEEEEcCCCccccCCeEe--ecCCCCeEEEEEc
Q 004203          174 VRLWNASTAECIGSR---DFYRPIASIAFHA--SGELLAVAS--GHKLYIWRYNMREETSSPRIV--LRTRRSLRAVHFH  244 (768)
Q Consensus       174 VrLWDl~sg~~i~~l---~h~~~V~svafSP--DG~~LatgS--dd~I~IWDl~t~~~~~~~~~l--~~h~~~V~sVaFS  244 (768)
                      |++||---+..+...   ..++.+..+..-+  +..++..++  ..+++++|.+..+........  .+...-+++++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            999998777665432   1223333333223  455555554  345999999998765532222  2335678999999


Q ss_pred             cCCCeEEEEE
Q 004203          245 PHAAPLLLTA  254 (768)
Q Consensus       245 PDG~~LlaS~  254 (768)
                      +.|++++++-
T Consensus       886 ~~GN~lAa~L  895 (1034)
T KOG4190|consen  886 DKGNKLAAAL  895 (1034)
T ss_pred             cCcchhhHHh
Confidence            9999887643

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.79  E-value=0.00031  Score=76.02  Aligned_cols=115  Identities=16%  Similarity=0.217  Sum_probs=80.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-Ce----EEEEEecCC------------CCcEEEEEccC-CCCEEEEE
Q 004203          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GS----CLKVLHGHR------------RTPWVVRFHPL-NPTIIASG  168 (768)
Q Consensus       107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-g~----~l~~l~gH~------------g~V~sVafSP~-dg~lLaSg  168 (768)
                      ..-|.++.|..+|.+||+|..+|.|.+|.-+. .+    ....++.|.            ..|..+.|.++ +...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            44689999999999999999999999996433 22    234444453            45788999873 23467777


Q ss_pred             eCCCeEEEEECCCCcE-----------------------------------EEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 004203          169 SLDHEVRLWNASTAEC-----------------------------------IGSR--DFYRPIASIAFHASGELLAVASG  211 (768)
Q Consensus       169 S~DgtVrLWDl~sg~~-----------------------------------i~~l--~h~~~V~svafSPDG~~LatgSd  211 (768)
                      ..|++|++|.+.....                                   .+.+  .|..-|+++.++.|++.++++.+
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD  184 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence            8899999998864211                                   1111  25556788888888887777766


Q ss_pred             CeEEEEEcCC
Q 004203          212 HKLYIWRYNM  221 (768)
Q Consensus       212 d~I~IWDl~t  221 (768)
                      =+|.+|++.-
T Consensus       185 LRINLWnlei  194 (433)
T KOG1354|consen  185 LRINLWNLEI  194 (433)
T ss_pred             eeeeeccccc
Confidence            6677777653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=4.9e-05  Score=85.54  Aligned_cols=148  Identities=17%  Similarity=0.147  Sum_probs=108.3

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (768)
                      +.++...+++.+.|++|++|.++..           +++.|+++|.++.|-.|-++++++  |+-|.+||.--|+.+..+
T Consensus       743 AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~  820 (1034)
T KOG4190|consen  743 AIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQM  820 (1034)
T ss_pred             hcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhh
Confidence            4456778899999999999998742           467899999999999988887754  789999998767655432


Q ss_pred             e-c-CCCCcEEEEEccC-CCCEEEEE-eCCCeEEEEECCCCcEEEEec------CCCCeEEEEEcCCCCEEEEEE-CCeE
Q 004203          146 H-G-HRRTPWVVRFHPL-NPTIIASG-SLDHEVRLWNASTAECIGSRD------FYRPIASIAFHASGELLAVAS-GHKL  214 (768)
Q Consensus       146 ~-g-H~g~V~sVafSP~-dg~lLaSg-S~DgtVrLWDl~sg~~i~~l~------h~~~V~svafSPDG~~LatgS-dd~I  214 (768)
                      . . ..+.+..+..-|. +..++..| +...+|+++|.+.++....+.      .+.-+.+++..+.|++++.+- .|.|
T Consensus       821 ~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci  900 (1034)
T KOG4190|consen  821 EDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI  900 (1034)
T ss_pred             hcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence            1 1 1122333333332 34444444 778899999999987665543      234678999999999998886 5559


Q ss_pred             EEEEcCCCcccc
Q 004203          215 YIWRYNMREETS  226 (768)
Q Consensus       215 ~IWDl~t~~~~~  226 (768)
                      .+.|.++++.+.
T Consensus       901 ~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  901 AILDARNGKVIN  912 (1034)
T ss_pred             EEEecCCCceec
Confidence            999999998654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.75  E-value=0.0021  Score=79.86  Aligned_cols=141  Identities=15%  Similarity=0.220  Sum_probs=96.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEeC------CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC---CCeEEE
Q 004203          106 PPRSTIAAAFSPDGKTLASTHG------DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL---DHEVRL  176 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~------DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~---DgtVrL  176 (768)
                      +...-..++|-.||.+||+.+.      -..||||+-+ |+...+-..-.+--.+++|.| .|++||+..+   ...|.+
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvF  285 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVF  285 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEE
Confidence            3345568999999999998775      2589999965 664444333334344689999 9999999776   336777


Q ss_pred             EECCCCcEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCe
Q 004203          177 WNASTAECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP  249 (768)
Q Consensus       177 WDl~sg~~i~~l-----~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~  249 (768)
                      |.- +|-.-..+     .....|..+.|++|+..||+...+.|++|-..+-..-.+..........+..+.|+|...+
T Consensus       286 fEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~  362 (928)
T PF04762_consen  286 FER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL  362 (928)
T ss_pred             Eec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence            764 33332222     2345889999999999999999888999987775532211222233444556999996543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.73  E-value=0.0001  Score=79.71  Aligned_cols=159  Identities=9%  Similarity=0.112  Sum_probs=111.0

Q ss_pred             EEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-----eEEEEEecCCCCcEEEEE
Q 004203           85 ASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-----SCLKVLHGHRRTPWVVRF  157 (768)
Q Consensus        85 vSgs~DgsIrlWd~~t~--~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg-----~~l~~l~gH~g~V~sVaf  157 (768)
                      ++.+-+..|-+-|.+++  +--..+..|.++.|...+++++.|...|.|..+|++.+     .+...+. |...|+++..
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence            45556677778888776  22236778999999998999999999999999999875     3445553 8888988876


Q ss_pred             ccCCCCEEEEEeCCCeEEEEECCCCcE---EEEe-cCCCC--eEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc-CCe
Q 004203          158 HPLNPTIIASGSLDHEVRLWNASTAEC---IGSR-DFYRP--IASIAFHASGELLAVASGHK-LYIWRYNMREETS-SPR  229 (768)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~sg~~---i~~l-~h~~~--V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~-~~~  229 (768)
                      -..++.+|++.+.+|+|+|||++.-++   +... +|-..  ..-+-.++....++++++|- .+||.++.+.... .++
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            555678899999999999999998776   4443 34322  22233455556777777666 9999999887543 122


Q ss_pred             EeecCCCCeEEEEEc
Q 004203          230 IVLRTRRSLRAVHFH  244 (768)
Q Consensus       230 ~l~~h~~~V~sVaFS  244 (768)
                      ........+.+++|.
T Consensus       387 ~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  387 PYSASEVDIPSVAFD  401 (425)
T ss_pred             CCccccccccceehh
Confidence            222233455666664

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.69  E-value=0.00025  Score=80.53  Aligned_cols=136  Identities=14%  Similarity=0.184  Sum_probs=103.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC----------C-CeEEEEE
Q 004203          110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL----------D-HEVRLWN  178 (768)
Q Consensus       110 VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~----------D-gtVrLWD  178 (768)
                      -+-+.|||-|.||++-..-| |.+|--++...+..|. |.+ |.-+.||| ..++|++=+.          + ..++|||
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEE
Confidence            46789999999999988775 8899877776677764 666 88899999 9999998432          1 4799999


Q ss_pred             CCCCcEEEEecC---CC-CeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          179 ASTAECIGSRDF---YR-PIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       179 l~sg~~i~~l~h---~~-~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                      +++|...+.+..   .. .-.-+.||-|++++|.-..++|.||+..+-....   ...-.-..|....|+|.+..|+.
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec---ccccCCccccCcccCCCcceEEE
Confidence            999998888653   11 2245789999999999999999999876643322   11112357889999999886653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.68  E-value=0.029  Score=62.62  Aligned_cols=106  Identities=13%  Similarity=0.087  Sum_probs=79.3

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEE-e---------CCCeEEEEECCCC
Q 004203          118 DGKTLASTHGD-----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG-S---------LDHEVRLWNASTA  182 (768)
Q Consensus       118 DG~~LaSgS~D-----gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSg-S---------~DgtVrLWDl~sg  182 (768)
                      ++++++.....     ++|.+.|.++++.+..+..-.. .+.+ ++| |++.++.+ +         ++..|.+||+.+.
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~-P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~   87 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFL-PNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTH   87 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCC-Ccee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence            55555544433     8999999999999988875433 3344 999 66666554 4         5789999999999


Q ss_pred             cEEEEecCCCC--------eEEEEEcCCCCEEEEEE---CCeEEEEEcCCCcccc
Q 004203          183 ECIGSRDFYRP--------IASIAFHASGELLAVAS---GHKLYIWRYNMREETS  226 (768)
Q Consensus       183 ~~i~~l~h~~~--------V~svafSPDG~~LatgS---dd~I~IWDl~t~~~~~  226 (768)
                      +.+..+.....        -..++++|||++|++..   +..+.++|+.+++...
T Consensus        88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence            99988764332        33789999999999887   3449999999987644

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.0014  Score=74.84  Aligned_cols=158  Identities=13%  Similarity=0.140  Sum_probs=105.3

Q ss_pred             CCCeEEEEeCCCCCC---C----CCCCCeEEEEECCCCCEE-EEEe--C---------CCeEEEEeCCCCeEEEEEecCC
Q 004203           89 EAESLHHLRPKYCPL---S----PPPRSTIAAAFSPDGKTL-ASTH--G---------DHTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        89 ~DgsIrlWd~~t~~L---~----gH~~~VtslafSPDG~~L-aSgS--~---------DgtVrVWDl~tg~~l~~l~gH~  149 (768)
                      .-..|++|......+   .    -....=..+.|++-|.-| +.++  -         ..++++++++..++...+. ..
T Consensus       192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~  270 (566)
T KOG2315|consen  192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KE  270 (566)
T ss_pred             CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CC
Confidence            345688888752210   0    011222357788866533 2222  2         3468899988555555554 47


Q ss_pred             CCcEEEEEccCCCCEEEE--EeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC----CeEEEEEcCCCc
Q 004203          150 RTPWVVRFHPLNPTIIAS--GSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYNMRE  223 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaS--gS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd----d~I~IWDl~t~~  223 (768)
                      ++|.++.|+| +++.++.  |-.=..+.|+|++ +.++..+. +++-+++-|+|.|++|+.++-    |.+-|||+.+.+
T Consensus       271 GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K  347 (566)
T KOG2315|consen  271 GPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK  347 (566)
T ss_pred             CCceEEEECC-CCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence            8999999999 7765544  5556689999986 45555543 567788999999999998884    349999999876


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .+.   ...  -..-+-+.|+|||++++++.-
T Consensus       348 ~i~---~~~--a~~tt~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  348 LIA---KFK--AANTTVFEWSPDGEYFLTATT  374 (566)
T ss_pred             hcc---ccc--cCCceEEEEcCCCcEEEEEec
Confidence            543   111  234466889999999988654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.67  E-value=0.0015  Score=73.92  Aligned_cols=153  Identities=10%  Similarity=0.134  Sum_probs=109.2

Q ss_pred             CeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEe--CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203           91 ESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (768)
Q Consensus        91 gsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS--~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL  165 (768)
                      ..+.++++....+.   .-+++|...+|+|+++.|++.+  .+-.+-++|++.. ....+  ..+.=+.+-|+| .++++
T Consensus       255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-~~r~i  330 (561)
T COG5354         255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-HERYI  330 (561)
T ss_pred             ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-cccEE
Confidence            34666666544222   5588999999999999888776  4888999999865 33333  344455678999 88988


Q ss_pred             EEEeCC---CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCCccccCCeEeecCC
Q 004203          166 ASGSLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVLRTR  235 (768)
Q Consensus       166 aSgS~D---gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-------dd~I~IWDl~t~~~~~~~~~l~~h~  235 (768)
                      +.++-|   |.+-+||......+...-.......+.|+||++++.+..       |..|.|||+.....-          
T Consensus       331 l~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------  400 (561)
T COG5354         331 LFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------  400 (561)
T ss_pred             EEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------
Confidence            887765   579999988765544222233445678999999887765       234999999776531          


Q ss_pred             CCeEEEEEccCCCeEEEEEeeCC
Q 004203          236 RSLRAVHFHPHAAPLLLTAEVND  258 (768)
Q Consensus       236 ~~V~sVaFSPDG~~LlaS~svwd  258 (768)
                       ..+.+.|.|.|++..+++..+.
T Consensus       401 -el~~~~W~p~~~~~ttsSs~~~  422 (561)
T COG5354         401 -ELTNITWDPSGQYVTTSSSCPK  422 (561)
T ss_pred             -hhhhccccCCcccceeeccCCC
Confidence             4567889999998777776663

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.00083  Score=74.03  Aligned_cols=152  Identities=20%  Similarity=0.171  Sum_probs=110.6

Q ss_pred             CCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203          103 LSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (768)
Q Consensus       103 L~gH~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s  181 (768)
                      +.+|...|.+++|||..+ ++..++.+.+|+|.|+++..++..+..+ ..+++++|.-++.++|+.|...|.|.+||++.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            567888999999999666 7889999999999999999998888877 77999999997888888899999999999997


Q ss_pred             CcEE-EEec---CCCCeEEEEEc------CCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203          182 AECI-GSRD---FYRPIASIAFH------ASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       182 g~~i-~~l~---h~~~V~svafS------PDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Ll  251 (768)
                      .+-. ..+.   ...+|..++.-      +-|.+ ++++--.+..|.+........+....+..+...+++.++-.+.++
T Consensus       268 ~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl-Lv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l  346 (463)
T KOG1645|consen  268 PEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL-LVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLL  346 (463)
T ss_pred             CCchHhhhhhhhccCcceeecccCccccccccce-EEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEE
Confidence            5431 1111   12334333332      22333 334444577788766554443334445567778888888888888


Q ss_pred             EEEee
Q 004203          252 LTAEV  256 (768)
Q Consensus       252 aS~sv  256 (768)
                      ++..-
T Consensus       347 ~tyRs  351 (463)
T KOG1645|consen  347 LTYRS  351 (463)
T ss_pred             EEecC
Confidence            88763

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.63  E-value=0.0003  Score=76.12  Aligned_cols=79  Identities=18%  Similarity=0.269  Sum_probs=69.5

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (768)
                      ++.+|.+.+.++.|.+..+.|++|..|..|.+||+--.+ ....+.+|.+.|..+..-+ .-+.+.+++.||.|.+||++
T Consensus       192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence            467999999999999999999999999999999986544 3466789999999888777 78899999999999999986


Q ss_pred             C
Q 004203          181 T  181 (768)
Q Consensus       181 s  181 (768)
                      .
T Consensus       271 ~  271 (404)
T KOG1409|consen  271 V  271 (404)
T ss_pred             c
Confidence            4

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.62  E-value=0.0035  Score=72.24  Aligned_cols=113  Identities=13%  Similarity=0.172  Sum_probs=81.0

Q ss_pred             CeEEEEECC-CCCEEEEE----eCCCe----EEEEeCCCCeE--E--EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEE
Q 004203          109 STIAAAFSP-DGKTLAST----HGDHT----VKIIDCQTGSC--L--KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVR  175 (768)
Q Consensus       109 ~VtslafSP-DG~~LaSg----S~Dgt----VrVWDl~tg~~--l--~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVr  175 (768)
                      ...++.||- +...+.+.    +.+|.    -.+|++..++.  +  ..+ .....|.+++++| +.+.++.|+.||+|.
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp-~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSP-SEDKLVLGCEDGSII  284 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCc-ccceEEEEecCCeEE
Confidence            346777877 44555543    22332    45666654432  1  222 3567899999999 999999999999999


Q ss_pred             EEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcc
Q 004203          176 LWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE  224 (768)
Q Consensus       176 LWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~  224 (768)
                      +||...+..... ...-..+.++|||+|..++++++ |.+.+||+.....
T Consensus       285 LyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  285 LYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             EEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            999987744333 44556788999999999999997 5599999876643

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.61  E-value=0.00023  Score=74.65  Aligned_cols=96  Identities=23%  Similarity=0.365  Sum_probs=73.7

Q ss_pred             EEeCCCeEEEEeCCCCC-CC---CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeE-EEEEecCCCCcEEEEEcc
Q 004203           86 SWVEAESLHHLRPKYCP-LS---PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHP  159 (768)
Q Consensus        86 Sgs~DgsIrlWd~~t~~-L~---gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~-l~~l~gH~g~V~sVafSP  159 (768)
                      .|..-+..+.|+++-.+ +.   .-...|++++-+| ....+++|+.||.|-+||.+.... ...++.|+.+++.+-|||
T Consensus       154 ~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp  233 (319)
T KOG4714|consen  154 NWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP  233 (319)
T ss_pred             eEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC
Confidence            33444456666665331 11   1223499999999 455677888899999999988754 356688999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCC
Q 004203          160 LNPTIIASGSLDHEVRLWNAST  181 (768)
Q Consensus       160 ~dg~lLaSgS~DgtVrLWDl~s  181 (768)
                      .++..|++++.||.+.-||..+
T Consensus       234 k~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  234 KNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CCchheeEecCCCcEEEEcCCC
Confidence            9999999999999999999874

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=0.0015  Score=77.09  Aligned_cols=161  Identities=17%  Similarity=0.149  Sum_probs=112.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF  157 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~--~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVaf  157 (768)
                      .+..++-|.-+|.|.+.+....  +...|+..      .-+|.++++|+.||+|.|..+-+.+....+. -..++.++++
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial  120 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIAL  120 (846)
T ss_pred             hcceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEe
Confidence            4566677777888888876543  22234333      5589999999999999999998888777665 3467999999


Q ss_pred             ccC----CCCEEEEEeCCCeEEEEECCC---CcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccC---
Q 004203          158 HPL----NPTIIASGSLDHEVRLWNAST---AECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS---  227 (768)
Q Consensus       158 SP~----dg~lLaSgS~DgtVrLWDl~s---g~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~---  227 (768)
                      +|+    ..+.+++|+.-| +.++.-+-   ...+......++|.++.|.  |.++|.+++.+|++||..++.....   
T Consensus       121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCC
Confidence            993    256899999888 87876432   2223233467899999997  7889988899999999988765331   


Q ss_pred             CeEeecCCCCeEEEEEccCCCeE
Q 004203          228 PRIVLRTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPDG~~L  250 (768)
                      +........-...+.|.++.+.+
T Consensus       198 p~~~~R~e~fpphl~W~~~~~LV  220 (846)
T KOG2066|consen  198 PSQSVRPELFPPHLHWQDEDRLV  220 (846)
T ss_pred             CCCCCCcccCCCceEecCCCeEE
Confidence            11111112234578888877733

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.56  E-value=0.0002  Score=82.93  Aligned_cols=143  Identities=12%  Similarity=0.150  Sum_probs=103.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---------------EEEEEecCCCCcEEEEEccCCCCEEEEEeC
Q 004203          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSL  170 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~---------------~l~~l~gH~g~V~sVafSP~dg~lLaSgS~  170 (768)
                      ......+++|+.+..+|+.|+.||.+++..+.+..               .-.++.||.+.|..+.|+. ..+.|-+...
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence            34567899999999999999999999999876521               2256789999999999998 7888889999


Q ss_pred             CCeEEEEECCCCcEEEEe---cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccC
Q 004203          171 DHEVRLWNASTAECIGSR---DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH  246 (768)
Q Consensus       171 DgtVrLWDl~sg~~i~~l---~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPD  246 (768)
                      +|.|.+|-+-.|.-....   ...+.|.+++|+.||+.++....|+ |.+=.++....-.+  .+.  ..-...+.|++|
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLk--g~~l~hv~ws~D  167 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELK--GQLLAHVLWSED  167 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcc--hheccceeeccc
Confidence            999999999888654432   3566899999999999888777444 44433332221110  000  112346889998


Q ss_pred             CCeEEEE
Q 004203          247 AAPLLLT  253 (768)
Q Consensus       247 G~~LlaS  253 (768)
                      .+.+++.
T Consensus       168 ~~~~Lf~  174 (1189)
T KOG2041|consen  168 LEQALFK  174 (1189)
T ss_pred             HHHHHhh
Confidence            8866653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.55  E-value=0.016  Score=65.70  Aligned_cols=170  Identities=15%  Similarity=0.183  Sum_probs=111.3

Q ss_pred             ecCCCEEEEEeCCC---------------eEEEEeCCCCC----CCCCCCC--eE-EEEECCCCCEEEEEeCCCeEEEEe
Q 004203           78 RDARRGLASWVEAE---------------SLHHLRPKYCP----LSPPPRS--TI-AAAFSPDGKTLASTHGDHTVKIID  135 (768)
Q Consensus        78 ~d~g~~LvSgs~Dg---------------sIrlWd~~t~~----L~gH~~~--Vt-slafSPDG~~LaSgS~DgtVrVWD  135 (768)
                      +..+.+|++|+...               .+.+||..++.    +.....+  .. -+.|+.|.+++|--. ...++|++
T Consensus        80 SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e  158 (561)
T COG5354          80 SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHE  158 (561)
T ss_pred             CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEe
Confidence            35677777776544               48999999883    3333333  44 788999888877553 34799999


Q ss_pred             CCCCeE----EEEEecCCCCcEEEEEccC-CCCEEEE-----EeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCC
Q 004203          136 CQTGSC----LKVLHGHRRTPWVVRFHPL-NPTIIAS-----GSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGE  204 (768)
Q Consensus       136 l~tg~~----l~~l~gH~g~V~sVafSP~-dg~lLaS-----gS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~  204 (768)
                      + ++..    .+.++  -..|....|+|. ++..|++     ...++.+++|.+..+..+.+.. ..-.-..+.|++.|+
T Consensus       159 ~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~  235 (561)
T COG5354         159 I-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK  235 (561)
T ss_pred             c-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc
Confidence            7 4332    12222  134777889993 3344554     4567899999999777665532 222234688999999


Q ss_pred             EEEEEE------C------CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          205 LLAVAS------G------HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       205 ~LatgS------d------d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +|.+-.      +      ..++|+++.....   +... ...++|...+|.|+++.+++..+
T Consensus       236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V~~-~~~~pVhdf~W~p~S~~F~vi~g  294 (561)
T COG5354         236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PVEK-DLKDPVHDFTWEPLSSRFAVISG  294 (561)
T ss_pred             eEEEEEEEeeecccceeccceEEEEeeccccc---ceec-cccccceeeeecccCCceeEEec
Confidence            776432      1      2288898874432   2222 66889999999999998877654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.55  E-value=0.00052  Score=73.37  Aligned_cols=148  Identities=16%  Similarity=0.216  Sum_probs=104.3

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCC-----CCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRL  176 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~-----g~V~sVafSP~dg~lLaSgS~DgtVrL  176 (768)
                      .|..-|.++.|+.|...++++ .|-.|.+|+++--.   .+..++.|.     .-|++..|+|..-.++...+..|+|+|
T Consensus       170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            466678899999988887765 56789999986432   233444443     457888999988889999999999999


Q ss_pred             EECCCCcE----EEEe-------------cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecC-----
Q 004203          177 WNASTAEC----IGSR-------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRT-----  234 (768)
Q Consensus       177 WDl~sg~~----i~~l-------------~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h-----  234 (768)
                      -|++....    ...+             +.-..|..+.|+++|+++++-..-+++|||++..+...  ..+.-|     
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pi--kTi~~h~~l~~  326 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPI--KTIPMHCDLMD  326 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCc--eeechHHHHHH
Confidence            99985321    0111             12346788999999999998888889999998876522  222122     


Q ss_pred             -------CCCe---EEEEEccCCCeEEEEEe
Q 004203          235 -------RRSL---RAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       235 -------~~~V---~sVaFSPDG~~LlaS~s  255 (768)
                             ...|   ..+.||.|.+.+++++-
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy  357 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSY  357 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCccccccccc
Confidence                   1222   45788888887766543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.016  Score=66.33  Aligned_cols=176  Identities=12%  Similarity=0.114  Sum_probs=118.2

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC-CCC-CCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCC
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYC-PLS-PPPRSTIAAAFSPDGKTLASTHG-----------DHTVKIIDCQTG  139 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~-~L~-gH~~~VtslafSPDG~~LaSgS~-----------DgtVrVWDl~tg  139 (768)
                      ..+-.+..|.+|++...-| |.+|--..- .+. -....|.-+.|||..+||++-+.           -..++|||+.+|
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence            3333445667777766554 567765432 111 12335788999999999998764           257999999999


Q ss_pred             eEEEEEec--CCCCcEE-EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECC---
Q 004203          140 SCLKVLHG--HRRTPWV-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH---  212 (768)
Q Consensus       140 ~~l~~l~g--H~g~V~s-VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd---  212 (768)
                      ...+.|..  ....++. ..||- |++++|--..| +|.||+..+-.++.... .-..|....|+|.+..||.++-.   
T Consensus       293 ~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~  370 (698)
T KOG2314|consen  293 LLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN  370 (698)
T ss_pred             chhcceeccCCCccccceEEecc-CCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence            98888865  2233443 58999 99999887765 69999987744433222 23578889999999999999832   


Q ss_pred             ---eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          213 ---KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       213 ---~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                         ++.+..+.++..+.   ...-+.-.=..+.|-.+|.+|++-.
T Consensus       371 ~parvtL~evPs~~~iR---t~nlfnVsDckLhWQk~gdyLcvkv  412 (698)
T KOG2314|consen  371 IPARVTLMEVPSKREIR---TKNLFNVSDCKLHWQKSGDYLCVKV  412 (698)
T ss_pred             CcceEEEEecCccceee---eccceeeeccEEEeccCCcEEEEEE
Confidence               27788887776543   1111222224577889999887644

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.52  E-value=0.013  Score=63.86  Aligned_cols=176  Identities=14%  Similarity=0.140  Sum_probs=114.2

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEE--EEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEeCC-CCeEEE
Q 004203           72 QIFEAGRDARRGLASWVEAESLH--HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQ-TGSCLK  143 (768)
Q Consensus        72 ~l~~a~~d~g~~LvSgs~DgsIr--lWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~-----DgtVrVWDl~-tg~~l~  143 (768)
                      .++++-+.+...++--..++.+.  +|-.....|.+|      -.||+||++|++.-+     .|.|-|||.. +.+.+.
T Consensus        19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~   92 (305)
T PF07433_consen   19 AVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG   92 (305)
T ss_pred             EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe
Confidence            34444444443333333444433  222222356677      579999999998755     5789999998 778889


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEe------------------CCCeEEEEECCCCcEEEEec-----CCCCeEEEEEc
Q 004203          144 VLHGHRRTPWVVRFHPLNPTIIASGS------------------LDHEVRLWNASTAECIGSRD-----FYRPIASIAFH  200 (768)
Q Consensus       144 ~l~gH~g~V~sVafSP~dg~lLaSgS------------------~DgtVrLWDl~sg~~i~~l~-----h~~~V~svafS  200 (768)
                      .+..|+-....+.+.| |++.|+.+.                  .+..+.+.|..+|+.+....     |+-.+.-++++
T Consensus        93 E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~  171 (305)
T PF07433_consen   93 EFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVD  171 (305)
T ss_pred             EecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEec
Confidence            9998887788899999 776555532                  12357777889998877632     55689999999


Q ss_pred             CCCCEEEEEECC-----e---EEEEEcCCCcc-ccCC-eEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          201 ASGELLAVASGH-----K---LYIWRYNMREE-TSSP-RIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       201 PDG~~LatgSdd-----~---I~IWDl~t~~~-~~~~-~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ++|..++..-..     .   +-+++....-. ...+ .....-...+-+|+++++|..+++++
T Consensus       172 ~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts  235 (305)
T PF07433_consen  172 GDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS  235 (305)
T ss_pred             CCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence            999866655421     1   55555443211 0000 00122357899999999999887775

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.0012  Score=72.66  Aligned_cols=94  Identities=16%  Similarity=0.224  Sum_probs=78.8

Q ss_pred             EEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004203          131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       131 VrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS  210 (768)
                      |++.+-.+.+....+.+|+..|+.++|+|.+..++..++.+..|+|.|+++..++..+.....+.+++|+-|....+.++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            66676666666667788889999999999555689999999999999999998888877779999999999888766666


Q ss_pred             C--CeEEEEEcCCCcc
Q 004203          211 G--HKLYIWRYNMREE  224 (768)
Q Consensus       211 d--d~I~IWDl~t~~~  224 (768)
                      +  |.|.|||++..+.
T Consensus       255 l~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEG  270 (463)
T ss_pred             ccCceEEEEEccCCCc
Confidence            3  4599999998764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.50  E-value=0.029  Score=58.56  Aligned_cols=166  Identities=16%  Similarity=0.170  Sum_probs=105.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCC--------CC-CCCCeEEEEECCCCCEEEEEeCC--------CeEEEEeCCCCeEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCPL--------SP-PPRSTIAAAFSPDGKTLASTHGD--------HTVKIIDCQTGSCLK  143 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L--------~g-H~~~VtslafSPDG~~LaSgS~D--------gtVrVWDl~tg~~l~  143 (768)
                      +..++.+...+ +.++|..++++        .. .....+++++.++|++.++....        +.|+.++.. ++...
T Consensus        51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~  128 (246)
T PF08450_consen   51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV  128 (246)
T ss_dssp             TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred             CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence            35555555544 44447776521        12 34568999999999977776553        668888887 66554


Q ss_pred             EEecCCCCcEEEEEccCCCCEE-EEEeCCCeEEEEECCCCc--E--EEEe---cCC-CCeEEEEEcCCCCEEEEEE-CCe
Q 004203          144 VLHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAE--C--IGSR---DFY-RPIASIAFHASGELLAVAS-GHK  213 (768)
Q Consensus       144 ~l~gH~g~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~sg~--~--i~~l---~h~-~~V~svafSPDG~~LatgS-dd~  213 (768)
                      ...+ -...+.++|+| +++.| ++-+..+.|..+|+....  .  .+.+   ... +..-.++++.+|++.++.. .++
T Consensus       129 ~~~~-~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~  206 (246)
T PF08450_consen  129 VADG-LGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR  206 (246)
T ss_dssp             EEEE-ESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred             EecC-cccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence            4443 45578899999 77655 456677889999986322  1  1222   222 2367899999998666554 567


Q ss_pred             EEEEEcCCCccccCCeEeecCCCCeEEEEE-ccCCCeEEEEE
Q 004203          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHF-HPHAAPLLLTA  254 (768)
Q Consensus       214 I~IWDl~t~~~~~~~~~l~~h~~~V~sVaF-SPDG~~LlaS~  254 (768)
                      |.++|.+ ++...   .+.-....+++++| -++.+.|.+++
T Consensus       207 I~~~~p~-G~~~~---~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  207 IVVFDPD-GKLLR---EIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEETT-SCEEE---EEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEECCC-ccEEE---EEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            9999987 44322   22223358999999 46767666654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.49  E-value=0.0014  Score=71.10  Aligned_cols=174  Identities=14%  Similarity=0.190  Sum_probs=126.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC-C-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC----CCeEEEEEecC
Q 004203           79 DARRGLASWVEAESLHHLRPKYC-P-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ----TGSCLKVLHGH  148 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~-~-----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~----tg~~l~~l~gH  148 (768)
                      .....+++.++|.++++|--... +     ...-..+++++.+.++-+.|+.|-..|++.-+.+.    .....+.+..|
T Consensus        34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h  113 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH  113 (404)
T ss_pred             cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence            35667899999999999976532 2     22346789999999999999999999999999653    33445666788


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-----------------------------c------------EEEE
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----------------------------E------------CIGS  187 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-----------------------------~------------~i~~  187 (768)
                      ...|..+-|+- ...++++.+.|+.+.---.+++                             +            .+.+
T Consensus       114 ~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~  192 (404)
T KOG1409|consen  114 QARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT  192 (404)
T ss_pred             hcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence            88888888887 6777888777764422111111                             0            0111


Q ss_pred             -ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          188 -RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       188 -l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                       -+|.+.+.+++|.+....|.+++.+. +.+||+...+...  ....+|...|+.+..-+.-+.+++...
T Consensus       193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~e  260 (404)
T KOG1409|consen  193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGE  260 (404)
T ss_pred             EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccC
Confidence             24778899999999999999998554 9999997766533  456778888888887777776655544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.49  E-value=0.012  Score=62.69  Aligned_cols=178  Identities=16%  Similarity=0.133  Sum_probs=110.0

Q ss_pred             EEEEEeCCCeEEEEeCCCC--------C-CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC-----
Q 004203           83 GLASWVEAESLHHLRPKYC--------P-LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-----  148 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~--------~-L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-----  148 (768)
                      +++..-.|..|.+-..+..        + -+.....-.-++||||+.+||.+...|+|++||+... .+..+...     
T Consensus        10 k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~   88 (282)
T PF15492_consen   10 KLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPG   88 (282)
T ss_pred             cEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCC
Confidence            3444445666666655432        1 1233445789999999999999999999999998753 34444321     


Q ss_pred             --CCCcEEEEEccCC-----CCEEEEEeCCCeEEEEECCCC-----cEEEEec----CCCCeEEEEEcCCCCEEEEEEC-
Q 004203          149 --RRTPWVVRFHPLN-----PTIIASGSLDHEVRLWNASTA-----ECIGSRD----FYRPIASIAFHASGELLAVASG-  211 (768)
Q Consensus       149 --~g~V~sVafSP~d-----g~lLaSgS~DgtVrLWDl~sg-----~~i~~l~----h~~~V~svafSPDG~~LatgSd-  211 (768)
                        ..+|..+.|-+..     ...|+....+|.++-|-+..+     +....+.    ....|.++.|+|.-++|++|+. 
T Consensus        89 d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~  168 (282)
T PF15492_consen   89 DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCE  168 (282)
T ss_pred             ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccC
Confidence              2456666665422     225666777887777765332     2222222    4678999999999998888761 


Q ss_pred             ---C--------eEEEEEcCCCcc-----------cc-----------CCeEe----ecCCCCeEEEEEccCCCeEEEEE
Q 004203          212 ---H--------KLYIWRYNMREE-----------TS-----------SPRIV----LRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       212 ---d--------~I~IWDl~t~~~-----------~~-----------~~~~l----~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                         +        ++..|.+-+...           ..           ....+    ......|..|..||||..|++..
T Consensus       169 ~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih  248 (282)
T PF15492_consen  169 QNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH  248 (282)
T ss_pred             CCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE
Confidence               1        367776544321           00           00001    11256799999999999777643


Q ss_pred             e-----eCCcCC
Q 004203          255 E-----VNDLDS  261 (768)
Q Consensus       255 s-----vwdl~s  261 (768)
                      -     +|++.+
T Consensus       249 ~sG~lsLW~iPs  260 (282)
T PF15492_consen  249 FSGSLSLWEIPS  260 (282)
T ss_pred             cCCeEEEEecCc
Confidence            2     666653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.48  E-value=0.021  Score=62.15  Aligned_cols=157  Identities=17%  Similarity=0.174  Sum_probs=109.7

Q ss_pred             CCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeC------------------CCeEEEEeCCCCeEEEE-
Q 004203           89 EAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHG------------------DHTVKIIDCQTGSCLKV-  144 (768)
Q Consensus        89 ~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~------------------DgtVrVWDl~tg~~l~~-  144 (768)
                      ..|.|-+||....     ++..|.-.-..+.+.|||+.|+.+-.                  +-.+.+.|..+|+.+.. 
T Consensus        75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~  154 (305)
T PF07433_consen   75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV  154 (305)
T ss_pred             CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence            4678999999832     56677777788999999988876632                  33466677888887765 


Q ss_pred             -E--ecCCCCcEEEEEccCCCCEEEEEeCCC-------eEEEEECCCCcEEEEe--------cCCCCeEEEEEcCCCCEE
Q 004203          145 -L--HGHRRTPWVVRFHPLNPTIIASGSLDH-------EVRLWNASTAECIGSR--------DFYRPIASIAFHASGELL  206 (768)
Q Consensus       145 -l--~gH~g~V~sVafSP~dg~lLaSgS~Dg-------tVrLWDl~sg~~i~~l--------~h~~~V~svafSPDG~~L  206 (768)
                       +  .-|.-.++.+++.+ ++..++..-..+       -|-+++..  +....+        ...+++-+|++++++.++
T Consensus       155 ~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i  231 (305)
T PF07433_consen  155 ELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLI  231 (305)
T ss_pred             ecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEE
Confidence             4  33777899999999 777666654443       24444433  322222        246789999999999999


Q ss_pred             EEEE--CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          207 AVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       207 atgS--dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ++.+  .+.+.+||..++....     ...-..+..++-.+++ ++++++
T Consensus       232 a~tsPrGg~~~~~d~~tg~~~~-----~~~l~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  232 AVTSPRGGRVAVWDAATGRLLG-----SVPLPDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             EEECCCCCEEEEEECCCCCEee-----ccccCceeeeeecCCc-eEEeCC
Confidence            9888  4559999999987533     2234567778877777 455444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.46  E-value=0.043  Score=58.71  Aligned_cols=141  Identities=19%  Similarity=0.237  Sum_probs=88.8

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCC--eEEEEE---ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 004203          113 AAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVL---HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS  187 (768)
Q Consensus       113 lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l---~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~  187 (768)
                      ++.+.||+.||.. .|..|.|-..++.  .++...   +...-.-+.++||| |+.+||.+...|+|+++|+...+....
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEc
Confidence            5667899988865 4556666654432  222222   22233466799999 999999999999999999976443222


Q ss_pred             e-------cCCCCeEEEEEcCCC-------CEEEEEECCeEEEEEcCCC--cc--ccCCeEeec-CCCCeEEEEEccCCC
Q 004203          188 R-------DFYRPIASIAFHASG-------ELLAVASGHKLYIWRYNMR--EE--TSSPRIVLR-TRRSLRAVHFHPHAA  248 (768)
Q Consensus       188 l-------~h~~~V~svafSPDG-------~~LatgSdd~I~IWDl~t~--~~--~~~~~~l~~-h~~~V~sVaFSPDG~  248 (768)
                      -       .....|..+.|-+-.       ++|+..-.|.++-|-+..+  +.  ....+.+.. ....|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            1       123567777776532       3555555666666655322  11  111122222 367899999999999


Q ss_pred             eEEEEEe
Q 004203          249 PLLLTAE  255 (768)
Q Consensus       249 ~LlaS~s  255 (768)
                      .|++++.
T Consensus       161 LLlVgG~  167 (282)
T PF15492_consen  161 LLLVGGC  167 (282)
T ss_pred             EEEEecc
Confidence            8887766

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.46  E-value=0.0012  Score=76.63  Aligned_cols=103  Identities=12%  Similarity=0.041  Sum_probs=79.6

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-------------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC-------------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ  137 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~-------------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~  137 (768)
                      ......+++.++.||.+++..+.+.                   +|.||+..|.-+.|+.+.+.|-+...+|.|.+|-+-
T Consensus        22 WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly  101 (1189)
T KOG2041|consen   22 WNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY  101 (1189)
T ss_pred             EcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence            3456788999999999999987643                   467999999999999999999999999999999987


Q ss_pred             CCeEEEEE--ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203          138 TGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (768)
Q Consensus       138 tg~~l~~l--~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (768)
                      .|.-...+  .-....|.+++|.- ||..+...-.||.|.+=.++
T Consensus       102 kgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen  102 KGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             cccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeec
Confidence            66432211  12345688999999 88888877777776654443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.41  E-value=0.0016  Score=69.76  Aligned_cols=117  Identities=16%  Similarity=0.268  Sum_probs=82.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----EEEEEecCC------------CCcEEEEEccCC-CCEEEE
Q 004203          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-----CLKVLHGHR------------RTPWVVRFHPLN-PTIIAS  167 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-----~l~~l~gH~------------g~V~sVafSP~d-g~lLaS  167 (768)
                      ....|+++.|...|.+|++|...|.|.+|.-+...     ....|++|.            ..|..+.|..+. ...++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45679999999999999999999999999765422     233456664            347778886523 346777


Q ss_pred             EeCCCeEEEEECCCCcE-------------------------------------E-----E--EecCCCCeEEEEEcCCC
Q 004203          168 GSLDHEVRLWNASTAEC-------------------------------------I-----G--SRDFYRPIASIAFHASG  203 (768)
Q Consensus       168 gS~DgtVrLWDl~sg~~-------------------------------------i-----~--~l~h~~~V~svafSPDG  203 (768)
                      ...|++|+||.+.....                                     +     +  .-.|..-++++.|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            88899999998864310                                     0     0  01244557788898888


Q ss_pred             CEEEEEECCeEEEEEcCCC
Q 004203          204 ELLAVASGHKLYIWRYNMR  222 (768)
Q Consensus       204 ~~LatgSdd~I~IWDl~t~  222 (768)
                      +.++++.+=+|.+|++...
T Consensus       185 et~lSaDdLrINLWnl~i~  203 (460)
T COG5170         185 ETLLSADDLRINLWNLEII  203 (460)
T ss_pred             heeeeccceeeeecccccc
Confidence            8888777777888877543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.36  E-value=0.00043  Score=87.05  Aligned_cols=140  Identities=11%  Similarity=0.148  Sum_probs=111.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ....-++++.||+|++|....++      ..+. ..|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|.....
T Consensus      2219 ~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2219 SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALS 2296 (2439)
T ss_pred             CCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCcccc
Confidence            34566788888888888876542      2344 789999999999999999999999999986 566777888998888


Q ss_pred             EEEEccCCCCEEEEEe---CCCeEEEEECCCCc---EEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203          154 VVRFHPLNPTIIASGS---LDHEVRLWNASTAE---CIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (768)
Q Consensus       154 sVafSP~dg~lLaSgS---~DgtVrLWDl~sg~---~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~  225 (768)
                      .++|-.   ..+++.+   .++.+.+||..-..   ++. ..|.+.++++++-|..+.|++|+.++ |++||++..+..
T Consensus      2297 Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2297 DFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred             ceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence            888854   6677654   46789999975422   233 67999999999999999999999554 999999988753

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.33  E-value=0.00055  Score=74.18  Aligned_cols=119  Identities=14%  Similarity=0.149  Sum_probs=94.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeE---EEEEecC
Q 004203           81 RRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC---LKVLHGH  148 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~--------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~---l~~l~gH  148 (768)
                      +..++.|...|.|...|++..        +..-|...|+++..-. ++++|.+.+-+|+|++||++--++   +..+.||
T Consensus       264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH  343 (425)
T KOG2695|consen  264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH  343 (425)
T ss_pred             CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc
Confidence            566788899999999999865        1235889999998887 889999999999999999987666   8889999


Q ss_pred             CCCcE--EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-----CeEEEEEc
Q 004203          149 RRTPW--VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-----PIASIAFH  200 (768)
Q Consensus       149 ~g~V~--sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~-----~V~svafS  200 (768)
                      -..-.  .+..++ ....+++++.|...|||.++.|..+.++....     .+.+++|.
T Consensus       344 vN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  344 VNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            65333  334556 66788889999999999999999998876543     44455554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.33  E-value=0.015  Score=64.56  Aligned_cols=231  Identities=16%  Similarity=0.177  Sum_probs=129.9

Q ss_pred             CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-c-------C---------C
Q 004203           90 AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-G-------H---------R  149 (768)
Q Consensus        90 DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-g-------H---------~  149 (768)
                      .+.+.++|+.+++   +......+....|||||+.++... ++.|++++..+++..+.-. |       -         -
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~  100 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF  100 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence            4568889998873   333356799999999999999886 4799999988875443221 2       0         1


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCC------------------------------------eEEEEECCCCcEEEE--e---
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDH------------------------------------EVRLWNASTAECIGS--R---  188 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~Dg------------------------------------tVrLWDl~sg~~i~~--l---  188 (768)
                      +.-..+-||| |++.|+....|.                                    .+.++|+.+++....  .   
T Consensus       101 ~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~  179 (353)
T PF00930_consen  101 DRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL  179 (353)
T ss_dssp             SSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred             ccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence            1234588999 888888754331                                    244456655543221  1   


Q ss_pred             -cCCCCeEEEEEcCCCC-EEEEEEC---Ce--EEEEEcCCCccccCCeEeecCCCCe---EEEEEc-cCCCeEEEEEeeC
Q 004203          189 -DFYRPIASIAFHASGE-LLAVASG---HK--LYIWRYNMREETSSPRIVLRTRRSL---RAVHFH-PHAAPLLLTAEVN  257 (768)
Q Consensus       189 -~h~~~V~svafSPDG~-~LatgSd---d~--I~IWDl~t~~~~~~~~~l~~h~~~V---~sVaFS-PDG~~LlaS~svw  257 (768)
                       .....+..+.|.++++ +++...+   +.  +.++|..++....  .........|   ....|. +++..++......
T Consensus       180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~--~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV--VLEETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE--EEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE--EEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence             1334678899999999 5555442   22  7888887765422  1122223333   355554 7777776665522


Q ss_pred             CcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce-EEEEecCCCEEEEEecC-CCCCcceEEec
Q 004203          258 DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTE-HDSGATRTQQS  335 (768)
Q Consensus       258 dl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil-~psFSpDG~rIv~~~~d-~~~Gs~~~~~~  335 (768)
                      .               +     ..+.+.+...+....|..+    ...+. ...++++++.|+|.-+. ...-.-++...
T Consensus       258 G---------------~-----~hly~~~~~~~~~~~lT~G----~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  258 G---------------Y-----RHLYLYDLDGGKPRQLTSG----DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             S---------------S-----EEEEEEETTSSEEEESS-S----SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             C---------------C-----cEEEEEcccccceeccccC----ceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence            1               1     1223322222211111111    22232 57899999999998554 33445566666


Q ss_pred             cC-CCceeeeeccc
Q 004203          336 LR-SSSSVRLLTYS  348 (768)
Q Consensus       336 ~~-ss~~~rl~~~~  348 (768)
                      ++ ++..++|+...
T Consensus       314 ~~~~~~~~~LT~~~  327 (353)
T PF00930_consen  314 LDSGGEPKCLTCED  327 (353)
T ss_dssp             TTETTEEEESSTTS
T ss_pred             eCCCCCeEeccCCC
Confidence            66 66666555433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.30  E-value=0.0074  Score=75.16  Aligned_cols=172  Identities=13%  Similarity=0.211  Sum_probs=113.5

Q ss_pred             cCCCEEEEEeCCCeEEEE----eCCCCC--C-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC--------------
Q 004203           79 DARRGLASWVEAESLHHL----RPKYCP--L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--------------  137 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlW----d~~t~~--L-~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~--------------  137 (768)
                      .+...++....+|.|-+.    +.....  . ..-...|.+++||||+.+|+..+.+++|.+.+..              
T Consensus        85 ~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~  164 (928)
T PF04762_consen   85 ADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF  164 (928)
T ss_pred             cCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence            355667777778888777    544442  2 2345689999999999999999999998887531              


Q ss_pred             -C--------CeEEEEEecC------------------------CCCcEEEEEccCCCCEEEEEeC---C---CeEEEEE
Q 004203          138 -T--------GSCLKVLHGH------------------------RRTPWVVRFHPLNPTIIASGSL---D---HEVRLWN  178 (768)
Q Consensus       138 -t--------g~~l~~l~gH------------------------~g~V~sVafSP~dg~lLaSgS~---D---gtVrLWD  178 (768)
                       .        |+....|.|.                        ...-..++|-. ||.++|..+.   +   ..+|+|+
T Consensus       165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEEC
Confidence             0        1112222221                        11223578988 9999998764   2   4799999


Q ss_pred             CCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeEee--cCCCCeEEEEEccCCCeEE
Q 004203          179 ASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIVL--RTRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       179 l~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd--d~--I~IWDl~t~~~~~~~~~l~--~h~~~V~sVaFSPDG~~Ll  251 (768)
                      -+ |+...+-. ..+--.+++|-|.|.+||+...  ++  |.+|.-+.-+...  +.+.  .....|..+.|++|+..|+
T Consensus       244 Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge--F~l~~~~~~~~v~~l~Wn~ds~iLA  320 (928)
T PF04762_consen  244 RE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE--FTLRFDPEEEKVIELAWNSDSEILA  320 (928)
T ss_pred             CC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee--EecCCCCCCceeeEEEECCCCCEEE
Confidence            76 66655543 2333457899999999998873  33  7777644332211  2222  3456799999999999776


Q ss_pred             EEE
Q 004203          252 LTA  254 (768)
Q Consensus       252 aS~  254 (768)
                      ...
T Consensus       321 v~~  323 (928)
T PF04762_consen  321 VWL  323 (928)
T ss_pred             EEe
Confidence            644

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.28  E-value=0.013  Score=72.05  Aligned_cols=174  Identities=13%  Similarity=0.156  Sum_probs=112.8

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC----C-----------
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ----T-----------  138 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~L---~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~----t-----------  138 (768)
                      .......++....+|.|.+-|.++..+   ..-...|.+++||||+++++..+.++++.+-+-.    .           
T Consensus        76 fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~  155 (1265)
T KOG1920|consen   76 FLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERK  155 (1265)
T ss_pred             EecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccc
Confidence            334566677777888888888887743   2346789999999999999999998888776430    0           


Q ss_pred             --------CeEEEEEecCCC---------------------CcEEEEEccCCCCEEEEEe----CC-CeEEEEECCCCcE
Q 004203          139 --------GSCLKVLHGHRR---------------------TPWVVRFHPLNPTIIASGS----LD-HEVRLWNASTAEC  184 (768)
Q Consensus       139 --------g~~l~~l~gH~g---------------------~V~sVafSP~dg~lLaSgS----~D-gtVrLWDl~sg~~  184 (768)
                              |+....|.|..+                     .=..|.|-- ||+++|...    .+ +.|++||-+ |..
T Consensus       156 sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~L  233 (1265)
T KOG1920|consen  156 SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GAL  233 (1265)
T ss_pred             cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chh
Confidence                    122223332211                     012388888 898888732    23 789999987 544


Q ss_pred             EEEe-cCCCCeEEEEEcCCCCEEEEEE----CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          185 IGSR-DFYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       185 i~~l-~h~~~V~svafSPDG~~LatgS----dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                      ...- ...+--.+++|-|.|.++++-.    +++|.++.-+.-....-..........|..++|+.++..|+.
T Consensus       234 ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  234 NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence            3332 2334556899999999998765    344888875443321100111222344899999999996655

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.26  E-value=0.0018  Score=77.24  Aligned_cols=140  Identities=17%  Similarity=0.178  Sum_probs=111.0

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeC---------CCeEEEEeCCCCeEE
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGSCL  142 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~---------DgtVrVWDl~tg~~l  142 (768)
                      .-+.+++.+..|...|+|.+-|..+.    ++..|++.|.+++..  |++|++++.         |.-|+|||++..+.+
T Consensus       182 imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral  259 (1118)
T KOG1275|consen  182 IMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL  259 (1118)
T ss_pred             EEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence            34567788999999999999999876    578999999887765  899999986         667999999988877


Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC---CCcE-EEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEE
Q 004203          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS---TAEC-IGS-RDFYRPIASIAFHASGELLAVAS-GHKLYI  216 (768)
Q Consensus       143 ~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~---sg~~-i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~I  216 (768)
                      .-+.-+.++ .-+.|+|.-...++.++..|...+-|..   +... +.. ......+..++++++|+.|+++. +|.|.+
T Consensus       260 ~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~  338 (1118)
T KOG1275|consen  260 SPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL  338 (1118)
T ss_pred             CCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence            767666664 4578999777789999999999999943   3211 122 23445699999999999999998 455999


Q ss_pred             EE
Q 004203          217 WR  218 (768)
Q Consensus       217 WD  218 (768)
                      |-
T Consensus       339 wa  340 (1118)
T KOG1275|consen  339 WA  340 (1118)
T ss_pred             ec
Confidence            97

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.0032  Score=74.48  Aligned_cols=135  Identities=19%  Similarity=0.202  Sum_probs=100.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (768)
Q Consensus       107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~  186 (768)
                      ...++|++++  ++.|+-|+.+|.|++++... .. .+...|...      .- +|.++++++.||+|.|-.+-+.+...
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence            4457788887  78999999999999999763 33 444445443      33 89999999999999999999999888


Q ss_pred             EecCCCCeEEEEEcCC-----CCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          187 SRDFYRPIASIAFHAS-----GELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       187 ~l~h~~~V~svafSPD-----G~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .+....++.+++++||     .+.+++|+..++.++.-+--+.. .........++|.++.|  .|.+++.+..
T Consensus       108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk-~~v~l~~~eG~I~~i~W--~g~lIAWand  178 (846)
T KOG2066|consen  108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNK-DSVVLSEGEGPIHSIKW--RGNLIAWAND  178 (846)
T ss_pred             eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCc-cceeeecCccceEEEEe--cCcEEEEecC
Confidence            8889999999999998     45777777655777654322221 12245566889999999  4666666543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.25  E-value=0.0011  Score=76.25  Aligned_cols=75  Identities=25%  Similarity=0.413  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg  182 (768)
                      ..+..|.+++++|+.+.|+.|+.||.|.+||...+...  +....-.+..++||| +|.+++.|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence            56778999999999999999999999999998766432  333445678899999 9999999999999999998654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.24  E-value=0.017  Score=64.16  Aligned_cols=92  Identities=18%  Similarity=0.171  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEe---------CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203          116 SPDGKTLASTH---------GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (768)
Q Consensus       116 SPDG~~LaSgS---------~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~  186 (768)
                      |||+++++...         ..+.+.|||+++++....... ...+....||| +++.++... ++.|+++++.+++..+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEE
Confidence            68888887643         257899999999875544433 56788899999 899999886 5689999998886554


Q ss_pred             EecC------------------CCCeEEEEEcCCCCEEEEEE
Q 004203          187 SRDF------------------YRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       187 ~l~h------------------~~~V~svafSPDG~~LatgS  210 (768)
                      ....                  -+.-..+-|+|||++|++..
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            3211                  12235688999999999876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.20  E-value=0.00081  Score=78.47  Aligned_cols=167  Identities=16%  Similarity=0.239  Sum_probs=115.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe-EEEEEecCCCC
Q 004203           81 RRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRT  151 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~g~  151 (768)
                      ...+++++..+.| +|++...       -+-+|.+.|+++-|+| .-..+++++-|..|..||+++-. .+..+..-...
T Consensus        82 ~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~  160 (1081)
T KOG0309|consen   82 PYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA  160 (1081)
T ss_pred             ceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc
Confidence            3456666665444 6777643       2568999999999999 55689999999999999998754 34444433444


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe-cCCCCeEEEEEcCC--CCEEEEEECCeEEEEEcCCCccccC
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHAS--GELLAVASGHKLYIWRYNMREETSS  227 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l-~h~~~V~svafSPD--G~~LatgSdd~I~IWDl~t~~~~~~  227 (768)
                      ...|+|+-.++..+|+ +..+.|++||++.|.. ...+ .|-..|+.++|..-  +..+-...++.|++||+.+...  .
T Consensus       161 asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e  237 (1081)
T KOG0309|consen  161 ASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--E  237 (1081)
T ss_pred             CceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--c
Confidence            5678999867777765 4456799999998653 3333 36677888888753  3334444467799999987655  2


Q ss_pred             CeEeecCCCCeEEEEEccCCCeEE
Q 004203          228 PRIVLRTRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPDG~~Ll  251 (768)
                      +........+|+--.|-|-|.-.+
T Consensus       238 ~~~~vtt~~piw~~r~~Pfg~g~~  261 (1081)
T KOG0309|consen  238 SKRTVTTNFPIWRGRYLPFGEGYC  261 (1081)
T ss_pred             cceeccccCcceeccccccCceeE
Confidence            334455567777777777665433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.18  E-value=0.004  Score=69.10  Aligned_cols=131  Identities=15%  Similarity=0.054  Sum_probs=84.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCCCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC-cEEEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLSPPP--RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT-PWVVRF  157 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~gH~--~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~-V~sVaf  157 (768)
                      +..++....++.+..||..++++.-..  ......  ..++..++.++.|+.|+.+|..+|+.+......... ......
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i  318 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV  318 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence            346777778899999998877422111  111111  125778888999999999999999887665322222 222222


Q ss_pred             ccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004203          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS-GHKLYIW  217 (768)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~-~V~svafSPDG~~LatgS-dd~I~IW  217 (768)
                         .+..++.++.||.|+++|..+|+.+..+.... .+..--.-.+++ |++++ +++|+.|
T Consensus       319 ---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~  376 (377)
T TIGR03300       319 ---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF  376 (377)
T ss_pred             ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence               35688889999999999999999988876433 332221222444 55555 5667765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.18  E-value=0.0026  Score=74.83  Aligned_cols=135  Identities=18%  Similarity=0.249  Sum_probs=100.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCC-----------CCEEEEEeCCCeE
Q 004203          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN-----------PTIIASGSLDHEV  174 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~d-----------g~lLaSgS~DgtV  174 (768)
                      |...-.+++|+|.| +||.|+.. .|.+.|..+.+.+..+.-|...|+.+.|.|..           .-+||++...|.|
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             CcccccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            34447789999866 77777765 78899999999999999999999999998721           2267888889999


Q ss_pred             EEEECCCCcEEEEec-CCCCeEEEEEcC---CCC-EEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEcc
Q 004203          175 RLWNASTAECIGSRD-FYRPIASIAFHA---SGE-LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP  245 (768)
Q Consensus       175 rLWDl~sg~~i~~l~-h~~~V~svafSP---DG~-~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSP  245 (768)
                      .+||...+..+..+. +.+++..++|-+   +.+ .|++-. ...|.+|+..+++...   +..-......++.+.|
T Consensus        92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen   92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDP  165 (1062)
T ss_pred             EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCC
Confidence            999999988877775 566888898876   343 333333 4559999999988644   2222334556677777

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.17  E-value=0.00086  Score=70.41  Aligned_cols=142  Identities=15%  Similarity=0.126  Sum_probs=92.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCe-----EEEEECCCCCEEEEEeC-----CCeEEEEeCCCCeEEEEEecCC
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPLSPPPRST-----IAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~V-----tslafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~~l~gH~  149 (768)
                      .+..++.+..|+.+-+.+.+.-.-..|+.++     .+..+-..+..+.++.-     -+..++|+++-.+.+..-+...
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            4667888889999888887652111122111     11222223444443321     2356677765443322222223


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--ecCCCCeEEEEEcC-CCCEEEEEECCe-EEEEEcCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHA-SGELLAVASGHK-LYIWRYNM  221 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~h~~~V~svafSP-DG~~LatgSdd~-I~IWDl~t  221 (768)
                      ..|.+++-+|...++++.|+.||.+-|||.+.......  ..|+.++..+-|+| ++..|++++.|+ +..||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            44899999997777888999999999999998754333  35899999999999 456888888555 99999876

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.13  E-value=0.0016  Score=76.00  Aligned_cols=135  Identities=17%  Similarity=0.325  Sum_probs=96.1

Q ss_pred             CeEEEEECCCC--CEEEEEeCCCeEEEEeCCC---CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 004203          109 STIAAAFSPDG--KTLASTHGDHTVKIIDCQT---GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE  183 (768)
Q Consensus       109 ~VtslafSPDG--~~LaSgS~DgtVrVWDl~t---g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~  183 (768)
                      .|-.+.|+|..  .+-++......-.+|++..   ......+-||+..|+.+.|+|++..++++++.|-.+..||+++..
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH  148 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence            36677888732  3333444445667898743   344567789999999999999999999999999999999999864


Q ss_pred             -EEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEcc
Q 004203          184 -CIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP  245 (768)
Q Consensus       184 -~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSP  245 (768)
                       ++..+. .......+.|+-....+.+.+ +..|++||++.+...  ...+.+|-..|+.+.|..
T Consensus       149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~p--l~s~K~~vs~vn~~~fnr  211 (1081)
T KOG0309|consen  149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTP--LCSLKGHVSSVNSIDFNR  211 (1081)
T ss_pred             cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcc--eEEecccceeeehHHHhh
Confidence             344432 455667899987554444444 445999999988763  234555777777777764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.07  E-value=0.0067  Score=72.65  Aligned_cols=173  Identities=13%  Similarity=0.102  Sum_probs=116.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L----~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      +...++-|+-...+...|+.+.+.    .--...|+-+..  +++.+.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            344444454455566666665421    112223665555  58999999999999999999999999999999999766


Q ss_pred             EEccCCCCEEEEEeC---------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCcc
Q 004203          156 RFHPLNPTIIASGSL---------DHEVRLWNASTAECIGSRDFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREE  224 (768)
Q Consensus       156 afSP~dg~lLaSgS~---------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG-~~LatgS-dd~I~IWDl~t~~~  224 (768)
                      ..   .|++|++++.         |.-|++||++.-+.+.-+.....-.-+.|+|.= ..+++.+ .+...+.|..+-..
T Consensus       224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence            55   6788888764         557999999987766555544444567788853 3444444 67799998433222


Q ss_pred             cc-CCeEeecCCCCeEEEEEccCCCeEEEEEeeC
Q 004203          225 TS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (768)
Q Consensus       225 ~~-~~~~l~~h~~~V~sVaFSPDG~~LlaS~svw  257 (768)
                      .. ....+......+..+.+|++|+.++++-...
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g  334 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG  334 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence            11 1112222345599999999999887765533

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.93  E-value=0.02  Score=58.50  Aligned_cols=106  Identities=18%  Similarity=0.074  Sum_probs=74.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCC----C
Q 004203          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFY----R  192 (768)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~----~  192 (768)
                      ++.++++++.++.|+.||..+|+.+..+.. .+.+.... .. .+..++.+..|+.|+.+|..+|+.+... ...    .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-ee-cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            577888889999999999999999888775 33222211 22 3556666778889999999999998873 211    1


Q ss_pred             CeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004203          193 PIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (768)
Q Consensus       193 ~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~  226 (768)
                      .........++..++++. ++.|..+|+++++...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW  146 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence            222333333477777777 6779999999987643

...

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.91  E-value=0.00023  Score=82.05  Aligned_cols=169  Identities=17%  Similarity=0.177  Sum_probs=116.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeC----CCeEEEEeCCCC--e--EEEEEe
Q 004203           82 RGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHG----DHTVKIIDCQTG--S--CLKVLH  146 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSP-DG~~LaSgS~----DgtVrVWDl~tg--~--~l~~l~  146 (768)
                      -.++.|..+|.|-+-.....      ...+|.+.+++++|++ |..+||.|-.    |..++|||+.++  .  ....|.
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence            44567778888888777644      3567889999999999 7788887743    778999999886  2  222333


Q ss_pred             c-CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcC-CCCEEEEEECCeEEEEE-cCCCc
Q 004203          147 G-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASGHKLYIWR-YNMRE  223 (768)
Q Consensus       147 g-H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSP-DG~~LatgSdd~I~IWD-l~t~~  223 (768)
                      + ......+++|-. +.+++.+|...+.++++|++........-....+..+..+| .+.+++.-.++.|-+|| .++-+
T Consensus       151 ~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnie  229 (783)
T KOG1008|consen  151 SSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIE  229 (783)
T ss_pred             cccccCcccccccc-CcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhc
Confidence            3 334456789986 89999999999999999998432222111233556677788 77888888888899999 44433


Q ss_pred             cccCCeEeecCC-----CCeEEEEEccCCCeEEEEE
Q 004203          224 ETSSPRIVLRTR-----RSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       224 ~~~~~~~l~~h~-----~~V~sVaFSPDG~~LlaS~  254 (768)
                      .   ++....+.     +.+..++|+|...-++++.
T Consensus       230 n---pl~~i~~~~N~~~~~l~~~aycPtrtglla~l  262 (783)
T KOG1008|consen  230 N---PLQIILRNENKKPKQLFALAYCPTRTGLLAVL  262 (783)
T ss_pred             c---HHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence            2   22222232     3489999999765555443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.87  E-value=0.017  Score=64.12  Aligned_cols=137  Identities=13%  Similarity=0.020  Sum_probs=88.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE-E
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV-V  155 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~----gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s-V  155 (768)
                      +..++.++.++.|..+|..+++..    -.........  .++..++.++.++.++.+|.++|+.+...... +.+.+ .
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p  141 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP  141 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence            456777777888888887776422    1111111222  25778889999999999999999988766532 22222 1


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeE------EEEEcCCCCEEEEEE-CCeEEEEEcCCCccc
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA------SIAFHASGELLAVAS-GHKLYIWRYNMREET  225 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~------svafSPDG~~LatgS-dd~I~IWDl~t~~~~  225 (768)
                      ..   .+..++.+..|+.|+.||.++|+.+..+.......      ..... + ..++++. ++++..+|..+++..
T Consensus       142 ~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       142 LV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPL  213 (377)
T ss_pred             EE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEe
Confidence            12   24566777889999999999999887765433221      11111 2 3555655 466999999887653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.84  E-value=0.08  Score=59.43  Aligned_cols=174  Identities=14%  Similarity=0.081  Sum_probs=93.5

Q ss_pred             cCCCEEEEEeCCCe--EEEEeCCCC---CCCCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           79 DARRGLASWVEAES--LHHLRPKYC---PLSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        79 d~g~~LvSgs~Dgs--IrlWd~~t~---~L~gH~-~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      ++.+.|+.+..|+.  +.+.|+.++   +|.... ....+..++++.+.++.......|+..|+++.+....+.-....+
T Consensus        46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~  125 (386)
T PF14583_consen   46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK  125 (386)
T ss_dssp             TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE
T ss_pred             CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc
Confidence            44455555555554  566667666   455443 233467788988998877777899999999998877777777766


Q ss_pred             EEEEEcc-CCCCEEEEEeC----------------------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCC-EEEE
Q 004203          153 WVVRFHP-LNPTIIASGSL----------------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAV  208 (768)
Q Consensus       153 ~sVafSP-~dg~lLaSgS~----------------------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~-~Lat  208 (768)
                      -...|.. .|+..++-.-.                      ...|.--|+.+|+....+.....+.-+.|+|... +|+.
T Consensus       126 g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f  205 (386)
T PF14583_consen  126 GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF  205 (386)
T ss_dssp             EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred             cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence            5567753 25555544221                      1356677889988877777777888899999554 5666


Q ss_pred             EECCe-----EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          209 ASGHK-----LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       209 gSdd~-----I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                      +-.|-     -+||-+++......+.........+..=-|.|||..|..
T Consensus       206 CHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  206 CHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             EE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             eccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence            65432     367766654332111111111233444457777776655

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.82  E-value=0.022  Score=67.67  Aligned_cols=139  Identities=15%  Similarity=0.166  Sum_probs=87.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEe------CCC--eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC------
Q 004203          106 PPRSTIAAAFSPDGKTLASTH------GDH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD------  171 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS------~Dg--tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~D------  171 (768)
                      ....+...++||||+.++...      .|+  .|.+++.. +.....+.+.  ......|+| +++.+++.+..      
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECC-CCCceEEEecCcceEEE
Confidence            335788999999999988765      244  56665653 3333333332  377789999 77766665422      


Q ss_pred             ------CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEE---EEcCCCc-cccCCeEeecC-CCCeEE
Q 004203          172 ------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI---WRYNMRE-ETSSPRIVLRT-RRSLRA  240 (768)
Q Consensus       172 ------gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~I---WDl~t~~-~~~~~~~l~~h-~~~V~s  240 (768)
                            +.+++.++..++...  ...+.|..+.|+|||+.|++..+++|++   -....++ ....+..+... ...+.+
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence                  234444555544433  3456799999999999999988887776   4433332 11112223222 334688


Q ss_pred             EEEccCCCeE
Q 004203          241 VHFHPHAAPL  250 (768)
Q Consensus       241 VaFSPDG~~L  250 (768)
                      +.|.+++..+
T Consensus       502 l~W~~~~~L~  511 (591)
T PRK13616        502 LDWRTGDSLV  511 (591)
T ss_pred             ceEecCCEEE
Confidence            9999999844

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.78  E-value=0.06  Score=50.35  Aligned_cols=99  Identities=16%  Similarity=0.139  Sum_probs=66.8

Q ss_pred             eEEEEECC---CC-CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 004203          110 TIAAAFSP---DG-KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (768)
Q Consensus       110 VtslafSP---DG-~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i  185 (768)
                      |+++++..   || +.|+.|+.|..||+|+-+  +.+..+.. ...|..+.-..  ...|+++..+|+|-+|+-.  +.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~--~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDRS--QRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeCc--cee
Confidence            56666655   33 589999999999999843  55666664 45577776665  5789999999999999853  344


Q ss_pred             EEecCCCCeEEEEEcC-CC----CEEEEEECCeEE
Q 004203          186 GSRDFYRPIASIAFHA-SG----ELLAVASGHKLY  215 (768)
Q Consensus       186 ~~l~h~~~V~svafSP-DG----~~LatgSdd~I~  215 (768)
                      ...+.+..+.++++.. ++    .+++.+++|+|-
T Consensus        75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4455555566665543 33    345555566653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=96.76  E-value=0.0058  Score=77.44  Aligned_cols=151  Identities=15%  Similarity=0.221  Sum_probs=115.5

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec-CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE  183 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~  183 (768)
                      .|-..|.++.=+|...+-++|+.||.|++|....++.+..++. -...|+.+.|+. .|+.+..+..||.+.+|.+. .+
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Cc
Confidence            3456688888888888889999999999999988887777652 226788899999 88888889999999999997 34


Q ss_pred             EEEEe-cCCCCeEEEEEcCCCCEEEEEE---CCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe---
Q 004203          184 CIGSR-DFYRPIASIAFHASGELLAVAS---GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE---  255 (768)
Q Consensus       184 ~i~~l-~h~~~V~svafSPDG~~LatgS---dd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s---  255 (768)
                      +.... .|......+.|-.  ..+++++   +++ +.+||........  ..-..|...++.+++-|..+.+++++.   
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred             ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc--eeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence            43333 4777778888865  5666665   444 9999976554422  223678999999999999997777765   


Q ss_pred             --eCCcCC
Q 004203          256 --VNDLDS  261 (768)
Q Consensus       256 --vwdl~s  261 (768)
                        +||++.
T Consensus      2360 v~l~D~rq 2367 (2439)
T KOG1064|consen 2360 VCLFDIRQ 2367 (2439)
T ss_pred             EEEeehHH
Confidence              777763

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0068  Score=70.30  Aligned_cols=93  Identities=14%  Similarity=0.121  Sum_probs=82.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE-EEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 004203          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (768)
Q Consensus       107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~-sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i  185 (768)
                      ...|.-+.|+|.-.+||.+..+|.|-++.+. .+.+.++.-|+..++ +++|.| ||++++.|-.||+|+|.|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence            4468889999999999999999999999988 888999987888887 999999 8999999999999999999999887


Q ss_pred             EE--ecCCCCeEEEEEcC
Q 004203          186 GS--RDFYRPIASIAFHA  201 (768)
Q Consensus       186 ~~--l~h~~~V~svafSP  201 (768)
                      ..  +-....|.++-|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            77  44567888888874

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0049  Score=68.94  Aligned_cols=175  Identities=11%  Similarity=0.077  Sum_probs=119.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-C------CCCCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEecC--C
Q 004203           80 ARRGLASWVEAESLHHLRPKY-C------PLSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGH--R  149 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t-~------~L~gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH--~  149 (768)
                      ....+.+++-||.++.|.... .      .+..|-..|.+++.+-||.++.|.+. |+.+|++|+++-..+..++-.  .
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP   98 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP   98 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence            456788999999999999765 1      24567778999999999999999888 999999999887655443321  1


Q ss_pred             CCcEEEEEccCCC--CEEEEEeCCCeEEEEECCCCcEEEE-e--cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC-
Q 004203          150 RTPWVVRFHPLNP--TIIASGSLDHEVRLWNASTAECIGS-R--DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR-  222 (768)
Q Consensus       150 g~V~sVafSP~dg--~lLaSgS~DgtVrLWDl~sg~~i~~-l--~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~-  222 (768)
                      +.+. ...++.+.  .+.++.-.++.+.++|-...-+... +  -|..+|..+.+.+.+..+++...++ |.-|..... 
T Consensus        99 g~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~  177 (558)
T KOG0882|consen   99 GFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPF  177 (558)
T ss_pred             CceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcc
Confidence            2222 22234111  2333445678999999876654332 2  3888999999999999887776444 999987631 


Q ss_pred             ----cccc-------CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 ----EETS-------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ----~~~~-------~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                          ....       ........+....++.|+|+|..+...+.
T Consensus       178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             cCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence                1000       00111223467889999999998766554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.71  E-value=0.055  Score=55.28  Aligned_cols=138  Identities=18%  Similarity=0.087  Sum_probs=87.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC-----CC---CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLS-----PP---PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~-----gH---~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      +..++....++.|..+|..++++.     ..   ...........+++.++.+..++.|..+|+++|+.+..+.......
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            445555667778888887776321     11   0112223333348888999989999999999999988887644221


Q ss_pred             -----------EEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc
Q 004203          153 -----------WVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRY  219 (768)
Q Consensus       153 -----------~sVafSP~dg~lLaSgS~Dgt-VrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl  219 (768)
                                 ..+.+.  ++ .++.+..++. +.+ |+.+++.+.... ...+... ...++..|++.+ ++++.+||+
T Consensus       156 ~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  156 SSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             S--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred             CcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence                       122222  34 6666676775 555 999998664333 3333331 456778888777 667999999


Q ss_pred             CCCcc
Q 004203          220 NMREE  224 (768)
Q Consensus       220 ~t~~~  224 (768)
                      ++++.
T Consensus       230 ~tG~~  234 (238)
T PF13360_consen  230 KTGKV  234 (238)
T ss_dssp             TTTEE
T ss_pred             CCCCE
Confidence            99875

...

>smart00320 WD40 WD40 repeats

Probab=96.68  E-value=0.0053  Score=41.97  Aligned_cols=39  Identities=38%  Similarity=0.641  Sum_probs=34.5

Q ss_pred             CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (768)
Q Consensus       139 g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (768)
                      +++...+..|...|.++.|++ ++.++++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            456677788999999999999 779999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.66  E-value=0.39  Score=54.06  Aligned_cols=244  Identities=13%  Similarity=0.041  Sum_probs=131.2

Q ss_pred             EecCCCEEE-EEeCCCe----EEEEeCCCCCCCCCC--C-CeEEEEECCCCCEEEEEeCC-----------CeEEEEeCC
Q 004203           77 GRDARRGLA-SWVEAES----LHHLRPKYCPLSPPP--R-STIAAAFSPDGKTLASTHGD-----------HTVKIIDCQ  137 (768)
Q Consensus        77 ~~d~g~~Lv-Sgs~Dgs----IrlWd~~t~~L~gH~--~-~VtslafSPDG~~LaSgS~D-----------gtVrVWDl~  137 (768)
                      .+.++.+++ +.+..|.    |++.|++++++..-.  . .-..+.|.+|++.|+....+           ..|++|.+.
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g  210 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG  210 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence            334455444 4454444    999999988533211  1 11239999999988766543           348999988


Q ss_pred             CCeE--EEEEecCCCC--cEEEEEccCCCCEEEEEe-C--C-CeEEEEECCCC-----cEEEEecCCCCe-EEEEEcCCC
Q 004203          138 TGSC--LKVLHGHRRT--PWVVRFHPLNPTIIASGS-L--D-HEVRLWNASTA-----ECIGSRDFYRPI-ASIAFHASG  203 (768)
Q Consensus       138 tg~~--l~~l~gH~g~--V~sVafSP~dg~lLaSgS-~--D-gtVrLWDl~sg-----~~i~~l~h~~~V-~svafSPDG  203 (768)
                      +...  ...+.+....  ...+..++ ++++++..+ .  + ..+++.|+..+     +..........+ ..+... .+
T Consensus       211 t~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~  288 (414)
T PF02897_consen  211 TPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GD  288 (414)
T ss_dssp             S-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TT
T ss_pred             CChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CC
Confidence            7643  3566555544  45678888 777766433 2  2 35899999875     333334433334 334333 44


Q ss_pred             CEEEEEECC----eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCC
Q 004203          204 ELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPP  279 (768)
Q Consensus       204 ~~LatgSdd----~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~  279 (768)
                      .+++...++    +|...++...........+..+...+.-..+...+.+|++....+...                   
T Consensus       289 ~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~-------------------  349 (414)
T PF02897_consen  289 RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS-------------------  349 (414)
T ss_dssp             EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE-------------------
T ss_pred             EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc-------------------
Confidence            444444332    377777777654221224556666544444555666777665533221                   


Q ss_pred             CeEEEecCC-CCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEeccCCCceeeee
Q 004203          280 PVICMAGAH-SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLL  345 (768)
Q Consensus       280 ~~V~l~d~~-s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~  345 (768)
                       .+.+.+.. ......+.  .+ ....+......+++..+.+.-++-..+...+..+..+...+.+.
T Consensus       350 -~l~v~~~~~~~~~~~~~--~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  350 -RLRVYDLDDGKESREIP--LP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             -EEEEEETT-TEEEEEEE--SS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred             -EEEEEECCCCcEEeeec--CC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence             12222211 00000000  00 00111234556788899998899999999999999888776553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.58  E-value=0.054  Score=64.23  Aligned_cols=138  Identities=12%  Similarity=0.165  Sum_probs=101.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC------------CEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203           82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG------------KTLASTHGDHTVKIIDCQTGSCLKVL  145 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG------------~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (768)
                      ..|+..+....|.+-|..+-    .+..|+..|+.+.|.|..            -+||++...|.|.+||...+..+..+
T Consensus        26 ~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l  105 (1062)
T KOG1912|consen   26 SGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL  105 (1062)
T ss_pred             cceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh
Confidence            33444445556777776543    466799999999998832            15677777899999999999988889


Q ss_pred             ecCCCCcEEEEEccC--CC-CEEEEEeCCCeEEEEECCCCcEEEEecCC-CCeEEEEEcC-CCCEEEEE-ECCeEEEEEc
Q 004203          146 HGHRRTPWVVRFHPL--NP-TIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASIAFHA-SGELLAVA-SGHKLYIWRY  219 (768)
Q Consensus       146 ~gH~g~V~sVafSP~--dg-~lLaSgS~DgtVrLWDl~sg~~i~~l~h~-~~V~svafSP-DG~~Latg-Sdd~I~IWDl  219 (768)
                      ..|..++..++|-+.  +. ++++......+|.+|+..+|+........ ....++.++| |.+.+.+- +.|.+.+-+.
T Consensus       106 ~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  106 SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            999999999998762  33 57777777889999999999988876544 3455688998 55555444 4555655554

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.55  E-value=0.064  Score=63.45  Aligned_cols=92  Identities=13%  Similarity=0.238  Sum_probs=63.0

Q ss_pred             CCeEEEEeCCC-----CeEEEEEecCCCCcEEEEEccCCCCEEEE-EeCCCeEEEEECCCCcE------------EEEec
Q 004203          128 DHTVKIIDCQT-----GSCLKVLHGHRRTPWVVRFHPLNPTIIAS-GSLDHEVRLWNASTAEC------------IGSRD  189 (768)
Q Consensus       128 DgtVrVWDl~t-----g~~l~~l~gH~g~V~sVafSP~dg~lLaS-gS~DgtVrLWDl~sg~~------------i~~l~  189 (768)
                      ++.|.+.|..+     .+.+..+. -....+.+.++| |+++++. +..+.+|.+.|+.+.+.            .....
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve  372 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE  372 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence            46788999887     34445554 445678899999 7776655 55588999999988553            22233


Q ss_pred             CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004203          190 FYRPIASIAFHASGELLAVAS-GHKLYIWRYNM  221 (768)
Q Consensus       190 h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t  221 (768)
                      ....-.-.+|+++|....+-. +..|-.||+.+
T Consensus       373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            333334578999997555555 55699999876

>PRK10115 protease 2; Provisional

Probab=96.54  E-value=2.9  Score=51.00  Aligned_cols=228  Identities=12%  Similarity=0.011  Sum_probs=118.2

Q ss_pred             eEEEEeCCCCC--CCCCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeCCCC--eEEEEEecCCCCcEEEEEccCC
Q 004203           92 SLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQTG--SCLKVLHGHRRTPWVVRFHPLN  161 (768)
Q Consensus        92 sIrlWd~~t~~--L~gH~~~VtslafSPDG~~LaSgS~D------gtVrVWDl~tg--~~l~~l~gH~g~V~sVafSP~d  161 (768)
                      .|++.|+.++.  .......-..++|++|++.|+....+      ..|+++++.++  +....+.+.........+.+.+
T Consensus       154 ~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d  233 (686)
T PRK10115        154 GIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTS  233 (686)
T ss_pred             EEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCC
Confidence            47888887764  12222222569999999888776542      47999999988  4455665444444433344436


Q ss_pred             CCEEEEEeC---CCeEEEEECC--CCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-C--e--EEEEEcCCCccccCCeEe
Q 004203          162 PTIIASGSL---DHEVRLWNAS--TAECIGSRDFYRPIASIAFHASGELLAVASG-H--K--LYIWRYNMREETSSPRIV  231 (768)
Q Consensus       162 g~lLaSgS~---DgtVrLWDl~--sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d--~--I~IWDl~t~~~~~~~~~l  231 (768)
                      +++++..+.   ++.+.+++..  +++....+.....+..-..+.. ..|..-++ +  .  |...++....   ....+
T Consensus       234 ~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~---~~~~l  309 (686)
T PRK10115        234 KHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQ---QWEEL  309 (686)
T ss_pred             CCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcc---cCeEE
Confidence            665554333   4579999953  4443333333332222122333 44444442 2  2  4444544211   12334


Q ss_pred             ecC--CCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEE
Q 004203          232 LRT--RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRP  309 (768)
Q Consensus       232 ~~h--~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p  309 (768)
                      ..+  ...|..+.++  +++|+.........                    .+.+.+........+....+.   -....
T Consensus       310 ~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~--------------------~l~~~~~~~~~~~~l~~~~~~---~~~~~  364 (686)
T PRK10115        310 IPPRENIMLEGFTLF--TDWLVVEERQRGLT--------------------SLRQINRKTREVIGIAFDDPA---YVTWI  364 (686)
T ss_pred             ECCCCCCEEEEEEEE--CCEEEEEEEeCCEE--------------------EEEEEcCCCCceEEecCCCCc---eEeee
Confidence            444  2468888887  44566665432221                    111111100000000000000   01122


Q ss_pred             EEe--cCCCEEEEEecCCCCCcceEEeccCCCceeeeeccc
Q 004203          310 SFV--RDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYS  348 (768)
Q Consensus       310 sFS--pDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~~~~  348 (768)
                      .++  +++..+.+...+...+...+..+..+...++|....
T Consensus       365 ~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~  405 (686)
T PRK10115        365 AYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTE  405 (686)
T ss_pred             cccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecC
Confidence            333  667788888899999999999888776666555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.51  E-value=0.29  Score=59.07  Aligned_cols=176  Identities=15%  Similarity=0.154  Sum_probs=118.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCC-CEEEEEeCCC-----eEEEEeCCCC------eE
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDG-KTLASTHGDH-----TVKIIDCQTG------SC  141 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG-~~LaSgS~Dg-----tVrVWDl~tg------~~  141 (768)
                      ...++..++-+..+|.|-+.+-...   .++.+...|...-|.-++ .+|++.+.|.     .|+|||++.-      .+
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c  110 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC  110 (933)
T ss_pred             EcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence            4467888899999999988876544   355666663333344444 6788877765     4999998542      23


Q ss_pred             E--EEEecC-----CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC----Cc-EEEEecCCCCeEEEEEcCCCCE-EEE
Q 004203          142 L--KVLHGH-----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST----AE-CIGSRDFYRPIASIAFHASGEL-LAV  208 (768)
Q Consensus       142 l--~~l~gH-----~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s----g~-~i~~l~h~~~V~svafSPDG~~-Lat  208 (768)
                      +  ..+.++     ..++.+++.|. +-+.+|.|-.||.|..+.-.-    |. .........+|+.+++..|++. +.+
T Consensus       111 ~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv  189 (933)
T KOG2114|consen  111 LYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV  189 (933)
T ss_pred             eeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence            3  122222     34677889998 788999999999999885321    11 1112335679999999999987 555


Q ss_pred             EECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          209 ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       209 gSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++...|.+|.+....  ........|...+++..|++....++.+++
T Consensus       190 ~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~  234 (933)
T KOG2114|consen  190 ATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGS  234 (933)
T ss_pred             EecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecC
Confidence            667779999988444  112335567888999999987664444443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.40  E-value=0.058  Score=63.53  Aligned_cols=143  Identities=12%  Similarity=0.005  Sum_probs=102.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEE-----
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVL-----  145 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~-----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l-~~l-----  145 (768)
                      ......+++-|+..|.+.+++-..+.     ..+-.+.+..+..|++..++|.|+..|.|.++-++.+... ..+     
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d  120 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD  120 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence            33467889999999999999987763     2345667788889999999999999999999987664321 111     


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-----cEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004203          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYN  220 (768)
Q Consensus       146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-----~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~  220 (768)
                      +.|...|++++|++ ++..+++|...|+|.+-.+.+.     +.+..+...+.|-.+...  ..+|.+++--+..+++..
T Consensus       121 ~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r~~Lc~tE  197 (726)
T KOG3621|consen  121 KSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTRCILCQTE  197 (726)
T ss_pred             ccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhhhheeecc
Confidence            23678899999999 9999999999999999888772     223334456677666554  334444444444455554


Q ss_pred             CC
Q 004203          221 MR  222 (768)
Q Consensus       221 t~  222 (768)
                      .+
T Consensus       198 ~e  199 (726)
T KOG3621|consen  198 AE  199 (726)
T ss_pred             hh
Confidence            43

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.94  Score=51.04  Aligned_cols=144  Identities=14%  Similarity=0.193  Sum_probs=99.6

Q ss_pred             eEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEE-EEe--CCCeEEEEECCCCcEE
Q 004203          110 TIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIA-SGS--LDHEVRLWNASTAECI  185 (768)
Q Consensus       110 VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLa-SgS--~DgtVrLWDl~sg~~i  185 (768)
                      -..++.++++..++.. ..+..|.+.|..+.+......- ......++++| +++.+. +-.  .++++.+.|-.+++..
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            4578889988855544 4568999999888777666542 22567799999 554444 444  3789999999999888


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcccc-CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          186 GSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       186 ~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .+......-..++++|+|+.+++..  ++.|.+.|........ .......-......+.++|+|.++.+...
T Consensus       154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence            8754332228899999999888877  4559999976654431 01111223345678999999997665543

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.34  E-value=0.8  Score=54.52  Aligned_cols=134  Identities=10%  Similarity=0.016  Sum_probs=90.6

Q ss_pred             EEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----------------------
Q 004203          113 AAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------------------  169 (768)
Q Consensus       113 lafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS----------------------  169 (768)
                      +=++|||+.+...+. .+.+.+.|.++.+....+.-.. ....+.++| +++++++.+                      
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence            445667776644333 5678888998887776665433 456678888 777776664                      


Q ss_pred             ------------------CCCeEEEEECCC-----CcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcc
Q 004203          170 ------------------LDHEVRLWNAST-----AECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREE  224 (768)
Q Consensus       170 ------------------~DgtVrLWDl~s-----g~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~  224 (768)
                                        .++.|.+.|.++     .+.+..+........++++|||+++++++  ++.+.|+|+.+.+.
T Consensus       276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence                              124588888887     45666677777888999999999999988  45599999988653


Q ss_pred             cc----CCe----EeecCCCCeEEEEEccCCC
Q 004203          225 TS----SPR----IVLRTRRSLRAVHFHPHAA  248 (768)
Q Consensus       225 ~~----~~~----~l~~h~~~V~sVaFSPDG~  248 (768)
                      .-    .+.    ....-.......+|.++|.
T Consensus       356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~  387 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN  387 (635)
T ss_pred             hhhccCCccceEEEeeccCCCcceEEECCCCC
Confidence            10    000    0111133456788999987

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.30  E-value=0.34  Score=54.56  Aligned_cols=167  Identities=16%  Similarity=0.177  Sum_probs=114.2

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203           83 GLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVa  156 (768)
                      ..+....++.|.+.|..+.+..   .-...-..++++++++.++.+..   +++|.+.|..+++.+.....-..+ ..++
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a  166 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA  166 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence            4444445688888886554211   11225678999999988887765   789999999999888775433333 7899


Q ss_pred             EccCCCCEEE-EEeCCCeEEEEECCCCcEEE-----EecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCcccc
Q 004203          157 FHPLNPTIIA-SGSLDHEVRLWNASTAECIG-----SRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETS  226 (768)
Q Consensus       157 fSP~dg~lLa-SgS~DgtVrLWDl~sg~~i~-----~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~~~~~  226 (768)
                      +.| ++..++ +-..++.|.+.|..+....+     .......-..+.++|+|+++++..++    .+.+.|..+.....
T Consensus       167 ~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         167 VDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             ECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            999 776444 44578899999987766553     12233344678999999987777633    58888888776533


Q ss_pred             CCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .. ...+.. ....+.++|+|+.+...
T Consensus       246 ~~-~~~~~~-~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         246 TD-LPVGSG-APRGVAVDPAGKAAYVA  270 (381)
T ss_pred             ec-cccccC-CCCceeECCCCCEEEEE
Confidence            10 112222 56788999999977665

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.20  E-value=0.06  Score=65.53  Aligned_cols=131  Identities=11%  Similarity=0.103  Sum_probs=91.1

Q ss_pred             CCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCC-cEEEEEccC------CCCEEEEEeCCCeEEEEECCCCc--EEEE-
Q 004203          119 GKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRT-PWVVRFHPL------NPTIIASGSLDHEVRLWNASTAE--CIGS-  187 (768)
Q Consensus       119 G~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~-V~sVafSP~------dg~lLaSgS~DgtVrLWDl~sg~--~i~~-  187 (768)
                      .++|+.- .....|+-.|+++|+.+..++.|... |.  .+.|+      +....+.|-.++.|..||.+-..  ++.. 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            3444433 34678999999999999999887754 44  44441      23345667778899999998632  3322 


Q ss_pred             ---ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          188 ---RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       188 ---l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                         +.......|++-+.+|. ||+|+ +|.||+||- .+..  ....+.+-..+|..|..+.||+++|+++.
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~-~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDR-LGKR--AKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             ccccccCCCceEEEecCCce-EEEEeCCCcEEeecc-cchh--hhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence               22445677888777774 66666 566999994 3322  23345566799999999999999999987

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08953 DUF1899: Domain of unknown function (DUF1899); InterPro: IPR015048 This set of proteins are found in various eukaryotic proteins

Probab=96.19  E-value=0.0027  Score=53.79  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=23.0

Q ss_pred             CCCCCcceecccccccccCCCccccceeecCCcceeecCCC
Q 004203           30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSF   70 (768)
Q Consensus        30 ~rssk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~   70 (768)
                      +|.|||||+|++..|+|.+|.+.++....||.+.+.++..|
T Consensus         3 vR~SKfRhv~g~~~kke~~y~~i~vs~~~~d~n~i~~N~kf   43 (65)
T PF08953_consen    3 VRSSKFRHVFGKPAKKEECYDNIRVSTSSWDSNFIAANPKF   43 (65)
T ss_dssp             ----TTTT-EEEE--GGGSEES--B-----SS-CEEE-SSE
T ss_pred             ccccccccccCccCCccccCcCEEEeCccccCCeEEEcCCE
Confidence            68999999999999999999999999999999998888555

The function is unknown. ; PDB: 2B4E_A 2AQ5_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.18  E-value=0.025  Score=66.53  Aligned_cols=138  Identities=13%  Similarity=0.144  Sum_probs=95.2

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 004203          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~  184 (768)
                      |...|.--+++..+++++.|+..|.+++|+-.+++....- .+-.+.+.....|+ +..++|.|+..|.|.++-+..+.+
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence            4445555566677999999999999999998777643322 23344455667888 888999999999999998877432


Q ss_pred             E--EE---e--cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCC-ccccCCeEeecCCCCeEEEEEc
Q 004203          185 I--GS---R--DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMR-EETSSPRIVLRTRRSLRAVHFH  244 (768)
Q Consensus       185 i--~~---l--~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~-~~~~~~~~l~~h~~~V~sVaFS  244 (768)
                      -  ..   .  .|...|++++|++|++.+++|.+ |+|.+-.++.. ........+..-...|-.+...
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            1  11   1  25779999999999999999985 56777777662 1111222344445566555543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.13  E-value=0.16  Score=57.14  Aligned_cols=142  Identities=18%  Similarity=0.172  Sum_probs=84.6

Q ss_pred             CeEEEEECCCCCEEEEE-eC----CCeEEEEeCCCCeEEEE-EecCCCCcEEEEEccCCCCEEEEEeCCC----------
Q 004203          109 STIAAAFSPDGKTLAST-HG----DHTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGSLDH----------  172 (768)
Q Consensus       109 ~VtslafSPDG~~LaSg-S~----DgtVrVWDl~tg~~l~~-l~gH~g~V~sVafSP~dg~lLaSgS~Dg----------  172 (768)
                      .+..+.+||||++|+.+ +.    ..+|+++|+++|+.+.. +....  ...+.|.+ +++.|+....|.          
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSD-DGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECT-TSSEEEEEECSTTTSS-CCGCC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeC-CCCEEEEEEeCcccccccCCCC
Confidence            44578999999998855 22    35699999999987643 23221  23489999 767666655332          


Q ss_pred             -eEEEEECCCCcEE--EEec--CCCC-eEEEEEcCCCCEEEEEE---CC--eEEEEEcCCCc-cccCCeEeecCCCCeEE
Q 004203          173 -EVRLWNASTAECI--GSRD--FYRP-IASIAFHASGELLAVAS---GH--KLYIWRYNMRE-ETSSPRIVLRTRRSLRA  240 (768)
Q Consensus       173 -tVrLWDl~sg~~i--~~l~--h~~~-V~svafSPDG~~LatgS---dd--~I~IWDl~t~~-~~~~~~~l~~h~~~V~s  240 (768)
                       .|++|++.+....  ..+.  .... ...+..++|+++|+..+   ..  .+++.|+.... ....+..+......+..
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~  281 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY  281 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence             4889999876432  3333  2233 67889999999887655   12  28888887751 11123344444444444


Q ss_pred             EEEccCCCeEEEE
Q 004203          241 VHFHPHAAPLLLT  253 (768)
Q Consensus       241 VaFSPDG~~LlaS  253 (768)
                      ..-+..+.+++.+
T Consensus       282 ~v~~~~~~~yi~T  294 (414)
T PF02897_consen  282 YVDHHGDRLYILT  294 (414)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEccCCEEEEee
Confidence            3333344444333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.06  E-value=0.27  Score=52.33  Aligned_cols=142  Identities=18%  Similarity=0.231  Sum_probs=89.8

Q ss_pred             CeEEEEECCCCCEEEEEe---CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE-CCCCcE
Q 004203          109 STIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN-ASTAEC  184 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS---~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD-l~sg~~  184 (768)
                      .+.+.++++||+.++...   ....++++..... ....+.+  ..+....|++ ++.+.+....+...+++. ..+++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g--~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG--GSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC--CccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence            689999999999887666   3445666654322 2222232  3677789999 677777766666667763 344433


Q ss_pred             EEE-ec---CCCCeEEEEEcCCCCEEEEEE----CCeEEEEEcCCCccc-----cCCeEee-cCCCCeEEEEEccCCCeE
Q 004203          185 IGS-RD---FYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREET-----SSPRIVL-RTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       185 i~~-l~---h~~~V~svafSPDG~~LatgS----dd~I~IWDl~t~~~~-----~~~~~l~-~h~~~V~sVaFSPDG~~L  250 (768)
                      ... ..   ....|..+.++|||..++.-.    +++|++--+......     ..+..+. .....+..+.|.+++..+
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            221 21   222899999999999888777    445766655322221     1122222 224688999999999866


Q ss_pred             EEEE
Q 004203          251 LLTA  254 (768)
Q Consensus       251 laS~  254 (768)
                      +.+.
T Consensus       181 V~~~  184 (253)
T PF10647_consen  181 VLGR  184 (253)
T ss_pred             EEeC
Confidence            6554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.03  E-value=1.1  Score=50.63  Aligned_cols=139  Identities=14%  Similarity=0.200  Sum_probs=80.6

Q ss_pred             EEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 004203          112 AAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (768)
Q Consensus       112 slafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l  188 (768)
                      .=+|.+||+.|+.++.   ...+++.|+++++..+.-.+.........++| +.+.++.......|+-.|+++.+....+
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            3467889988877766   56788889999987666554433343567788 6777777777778999999998876665


Q ss_pred             cCCCC-eEEEEE--cCCCCEEEEEE----C-------------------CeEEEEEcCCCccccCCeEeecCCCCeEEEE
Q 004203          189 DFYRP-IASIAF--HASGELLAVAS----G-------------------HKLYIWRYNMREETSSPRIVLRTRRSLRAVH  242 (768)
Q Consensus       189 ~h~~~-V~svaf--SPDG~~LatgS----d-------------------d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVa  242 (768)
                      ..... +....|  +.|+..++..-    +                   .+|...|+.+++.    ..+.....++..+.
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~~~~~wlgH~~  194 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVFEDTDWLGHVQ  194 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEEEESS-EEEEE
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEEecCccccCcc
Confidence            54443 334556  44566654331    0                   1155566666543    34566678899999


Q ss_pred             EccCCCeEEEEEe
Q 004203          243 FHPHAAPLLLTAE  255 (768)
Q Consensus       243 FSPDG~~LlaS~s  255 (768)
                      |+|....++.=+-
T Consensus       195 fsP~dp~li~fCH  207 (386)
T PF14583_consen  195 FSPTDPTLIMFCH  207 (386)
T ss_dssp             EETTEEEEEEEEE
T ss_pred             cCCCCCCEEEEec
Confidence            9998887777665

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.02  E-value=0.071  Score=59.98  Aligned_cols=153  Identities=12%  Similarity=0.079  Sum_probs=113.0

Q ss_pred             EEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC------CeEEE---------
Q 004203           85 ASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLK---------  143 (768)
Q Consensus        85 vSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t------g~~l~---------  143 (768)
                      ++..+++.|.++|....      .-+-|..+|..+.+++-+..+++....|.|.-|..+.      .+...         
T Consensus       116 Vs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy  195 (558)
T KOG0882|consen  116 VSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY  195 (558)
T ss_pred             eecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhh
Confidence            35557888999987643      1346999999999999999999999999999999872      11111         


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------------------------------C
Q 004203          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------------------------------F  190 (768)
Q Consensus       144 ~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---------------------------------h  190 (768)
                      .+........++.|+| ++..+.+-..|..|++++.++|+.++.+.                                 +
T Consensus       196 ~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~  274 (558)
T KOG0882|consen  196 GFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH  274 (558)
T ss_pred             cccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence            1223345677899999 99999999999999999999987643321                                 1


Q ss_pred             C-CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEE
Q 004203          191 Y-RPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVH  242 (768)
Q Consensus       191 ~-~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVa  242 (768)
                      . ...+.+.|+..|++|+.++-=+|++.++.+.+..+    +.+....|+-++
T Consensus       275 ~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~r----i~gk~e~ir~~~  323 (558)
T KOG0882|consen  275 GSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVR----ILGKDEAIRFTR  323 (558)
T ss_pred             cCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEE----Eeccchhhhhhh
Confidence            1 12346789999999999998889999999987654    444444444433

>smart00320 WD40 WD40 repeats

Probab=95.94  E-value=0.011  Score=40.23  Aligned_cols=32  Identities=44%  Similarity=0.586  Sum_probs=29.3

Q ss_pred             CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 004203          104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (768)
Q Consensus       104 ~gH~~~VtslafSPDG~~LaSgS~DgtVrVWD  135 (768)
                      ..|...|.++.|++++.++++++.|+.+++||
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            35788999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.90  E-value=0.14  Score=58.98  Aligned_cols=131  Identities=13%  Similarity=0.178  Sum_probs=74.8

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l  188 (768)
                      ....+.++|+|++++. .+||.-.||.....+....  |   .-....|.+ .++ +|.-...++|.|+.--+.+..+.+
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--G---~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--G---SGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--E---E-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--C---ceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceEE
Confidence            3678999999999988 5677888888544443222  2   234578888 444 666666788999632222222334


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       189 ~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .....+..+-.   |.+|...+++.|.+||+.+++...   .+ .. ..|..|.|+++|.+++..+.
T Consensus       106 ~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~---~i-~v-~~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen  106 KLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIR---RI-DV-SAVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             --SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEE---EE-SS--E-EEEEE-TTSSEEEEE-S
T ss_pred             cCCcccceEEc---CcEEEEECCCCEEEEEhhHcceee---EE-ec-CCCcEEEEECCCCEEEEEeC
Confidence            43334444432   888888888889999999887644   22 22 24899999999998887765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.76  E-value=0.38  Score=56.20  Aligned_cols=151  Identities=15%  Similarity=0.145  Sum_probs=95.7

Q ss_pred             CCCCCCCeEEEEECCC----CCEEEEEeCCCeEEEEeCC-----CCeEEEEEecCCC---C--cEEEEEccCCCCEEEEE
Q 004203          103 LSPPPRSTIAAAFSPD----GKTLASTHGDHTVKIIDCQ-----TGSCLKVLHGHRR---T--PWVVRFHPLNPTIIASG  168 (768)
Q Consensus       103 L~gH~~~VtslafSPD----G~~LaSgS~DgtVrVWDl~-----tg~~l~~l~gH~g---~--V~sVafSP~dg~lLaSg  168 (768)
                      ..|.-+.|.++.|.|-    -..|........|.||-+.     +++.+.....+-+   +  ...+.||| ...+|+.-
T Consensus        52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VL  130 (671)
T PF15390_consen   52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVL  130 (671)
T ss_pred             EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEE
Confidence            4456677999999994    3244555566789999874     2332222221111   1  23468999 66666664


Q ss_pred             eCCCeEEEEECCCC--cEEEEecCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCcccc-CCeEeecCCCCeEEEEE
Q 004203          169 SLDHEVRLWNASTA--ECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETS-SPRIVLRTRRSLRAVHF  243 (768)
Q Consensus       169 S~DgtVrLWDl~sg--~~i~~l~h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~-~~~~l~~h~~~V~sVaF  243 (768)
                      ..+..-.+++++..  .....+...+-|.|.+|.+||+.|+++-+..  -++||-..+.... ....++.-...|.++.-
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~A  210 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEA  210 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEE
Confidence            44443346666543  3334467889999999999999999888766  8899865544322 22345556678888887


Q ss_pred             ccCCCeEEEEEe
Q 004203          244 HPHAAPLLLTAE  255 (768)
Q Consensus       244 SPDG~~LlaS~s  255 (768)
                      .-|.+ ++.+.+
T Consensus       211 T~dsq-VAvaTE  221 (671)
T PF15390_consen  211 TVDSQ-VAVATE  221 (671)
T ss_pred             eccce-EEEEec
Confidence            76655 555544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.04  Score=64.16  Aligned_cols=92  Identities=12%  Similarity=0.143  Sum_probs=73.4

Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeE-EEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIA-SIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~-svafSPDG~~LatgS-dd~I~IWDl~t~~~~~  226 (768)
                      ..+.-+.|+| .-+++|.+..+|.|-+..+. .+.+.++. +...++ +++|.|||+.|++|- +|+|++.|+.++....
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3477799999 99999999999999999887 67777777 555666 999999999999998 5669999999987644


Q ss_pred             CCeEeecCCCCeEEEEEcc
Q 004203          227 SPRIVLRTRRSLRAVHFHP  245 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSP  245 (768)
                      .  ....-...|..+.|++
T Consensus        99 ~--~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 S--FLFSVETDISKGIWDR  115 (665)
T ss_pred             c--cccccccchheeeccc
Confidence            1  1233456788888874

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.64  E-value=0.17  Score=58.38  Aligned_cols=162  Identities=14%  Similarity=0.183  Sum_probs=85.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEE-eCCCCeEEEEEecCCCCcEEEEEc
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKII-DCQTGSCLKVLHGHRRTPWVVRFH  158 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVW-Dl~tg~~l~~l~gH~g~V~sVafS  158 (768)
                      .++.++. ..|+.-.++......- ...+.-..++|..+++ +|+-....+|+|+ +++ .+..+.++-. ..+..+  .
T Consensus        43 ngr~v~V-~g~geY~iyt~~~~r~-k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~-~~~~k~i~~~-~~~~~I--f  115 (443)
T PF04053_consen   43 NGRFVLV-CGDGEYEIYTALAWRN-KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK-NEVVKSIKLP-FSVEKI--F  115 (443)
T ss_dssp             TSSEEEE-EETTEEEEEETTTTEE-EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE-E-TT-----S-S-EEEE--E
T ss_pred             CCCEEEE-EcCCEEEEEEccCCcc-cccCceeEEEEecCcc-EEEEECCCeEEEEEcCc-cccceEEcCC-cccceE--E
Confidence            4444443 4566666666322211 1234456788998554 6666668899996 442 2222233322 123332  2


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC-------ccccCCeEe
Q 004203          159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR-------EETSSPRIV  231 (768)
Q Consensus       159 P~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~-------~~~~~~~~l  231 (768)
                      .  |.+|...+.+ .|.+||+.+++.++.+.... |..+.|+++|++++..+++.+++++.+..       +.....+..
T Consensus       116 ~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~  191 (443)
T PF04053_consen  116 G--GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFEL  191 (443)
T ss_dssp             ---SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEE
T ss_pred             c--CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEE
Confidence            2  6666666554 89999999999999988665 89999999999999999999888887654       011111222


Q ss_pred             ecC-CCCeEEEEEccCCCeEEEEE
Q 004203          232 LRT-RRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       232 ~~h-~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ... ...|.+..|.-|  .++.+.
T Consensus       192 ~~E~~~~IkSg~W~~d--~fiYtT  213 (443)
T PF04053_consen  192 IHEISERIKSGCWVED--CFIYTT  213 (443)
T ss_dssp             EEEE-S--SEEEEETT--EEEEE-
T ss_pred             EEEecceeEEEEEEcC--EEEEEc
Confidence            222 678899999876  455544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.63  E-value=1.1  Score=56.24  Aligned_cols=157  Identities=11%  Similarity=0.132  Sum_probs=101.0

Q ss_pred             eEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC
Q 004203           92 SLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD  171 (768)
Q Consensus        92 sIrlWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~D  171 (768)
                      .+++|-.....-. -...|.++.|.-|+..++.+..+|.|.+-|.++..... ...-...|.+++|+| |++.++..+.+
T Consensus        54 kv~~~~~s~~~~~-gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~-Dee~l~liT~~  130 (1265)
T KOG1920|consen   54 KVRLVAESFLPED-GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSP-DEELLALITGR  130 (1265)
T ss_pred             cccceeecccCcC-CCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecC-CCcEEEEEeCC
Confidence            3555554322222 23689999999999999999999999999988765332 222345699999999 99999999888


Q ss_pred             CeEEEEEC----CCCcEE-----------EE-ec-----------------------------CCCCeEEEEEcCCCCEE
Q 004203          172 HEVRLWNA----STAECI-----------GS-RD-----------------------------FYRPIASIAFHASGELL  206 (768)
Q Consensus       172 gtVrLWDl----~sg~~i-----------~~-l~-----------------------------h~~~V~svafSPDG~~L  206 (768)
                      ++|.+-+-    -..+.+           .. ++                             ..+.-+++.|--||+++
T Consensus       131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~f  210 (1265)
T KOG1920|consen  131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYF  210 (1265)
T ss_pred             cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEE
Confidence            88766432    111110           00 00                             11122459999999999


Q ss_pred             EEEE-----C-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          207 AVAS-----G-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       207 atgS-----d-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++..     + .+|++||-. +....   .-......=.+++|-|.|..+++...
T Consensus       211 AVs~~~~~~~~RkirV~drE-g~Lns---~se~~~~l~~~LsWkPsgs~iA~iq~  261 (1265)
T KOG1920|consen  211 AVSFVESETGTRKIRVYDRE-GALNS---TSEPVEGLQHSLSWKPSGSLIAAIQC  261 (1265)
T ss_pred             EEEEEeccCCceeEEEeccc-chhhc---ccCcccccccceeecCCCCeEeeeee
Confidence            9854     3 349999976 32211   11111233457899999996665443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.46  E-value=0.62  Score=50.52  Aligned_cols=150  Identities=13%  Similarity=0.208  Sum_probs=101.5

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-CCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (768)
                      ++.+-...|.++.|+|+.+.|++..+...-.||=..+|+.+.++.-.. .....+.+.. ++.++++--+++.+.++.+.
T Consensus        80 pi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          80 PILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             ccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEc
Confidence            356677779999999999999999888888888777898887764211 2244577877 78888888889999998887


Q ss_pred             CCcEEEE-------e---cC-CCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecC-------CCCeEEE
Q 004203          181 TAECIGS-------R---DF-YRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-------RRSLRAV  241 (768)
Q Consensus       181 sg~~i~~-------l---~h-~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h-------~~~V~sV  241 (768)
                      .......       +   .+ +.....++|+|....|.++-..+ +.||.+..............+       -..|.++
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            6532111       1   12 55788999999999999888665 666655433211100011111       2467888


Q ss_pred             EEccCCCeEEE
Q 004203          242 HFHPHAAPLLL  252 (768)
Q Consensus       242 aFSPDG~~Lla  252 (768)
                      .|++....+++
T Consensus       239 ~~~~~~~~LLV  249 (316)
T COG3204         239 EFNAITNSLLV  249 (316)
T ss_pred             eecCCCCcEEE
Confidence            89876554444

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.44  E-value=0.49  Score=49.98  Aligned_cols=130  Identities=14%  Similarity=0.149  Sum_probs=82.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE----------
Q 004203          118 DGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG----------  186 (768)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~t-g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~----------  186 (768)
                      .++.|+.|.++| |++++... .+..+..+  ...|..+..-| +-+.++.-+ |+.++++|+..-....          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            578999999999 99999833 33333332  23399999998 666666554 5999999997644333          


Q ss_pred             -----EecCCCCeEEEE---EcCCCCEEEEEECCeEEEEEcCCCcccc-CCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          187 -----SRDFYRPIASIA---FHASGELLAVASGHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       187 -----~l~h~~~V~sva---fSPDG~~LatgSdd~I~IWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                           .+.....+..++   -...+..|+++...+|.+|......... .......-...+.+++|.  ++.++.+.
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence                 122333455444   2234457788778888888886642211 122334456889999998  44455554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.42  E-value=1.2  Score=47.14  Aligned_cols=141  Identities=12%  Similarity=0.056  Sum_probs=93.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC-C--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE------------
Q 004203           79 DARRGLASWVEAESLHHLRPKY-C--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK------------  143 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t-~--~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~------------  143 (768)
                      ..+..|+.|.++| +.+++... .  ....+...|..+...++-+.|++-++ +.++++++..-....            
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcC-CccEEEEchhhcccccccccccccccc
Confidence            3567788888887 77777722 1  12234445999999998887776654 999999987644332            


Q ss_pred             ---EEecCCCCcEEEE-EccCCCCEEEEEeCCCeEEEEECCCC-----cEEEEecCCCCeEEEEEcCCCCEEEEEECCeE
Q 004203          144 ---VLHGHRRTPWVVR-FHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKL  214 (768)
Q Consensus       144 ---~l~gH~g~V~sVa-fSP~dg~lLaSgS~DgtVrLWDl~sg-----~~i~~l~h~~~V~svafSPDG~~LatgSdd~I  214 (768)
                         .+. ....+...+ -....+...+.....+.|.+|.....     +..+.+.....+..++|.  ++.|+++..++.
T Consensus        83 ~~~~~~-~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f  159 (275)
T PF00780_consen   83 LPTKLP-ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGF  159 (275)
T ss_pred             cccccc-ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCce
Confidence               111 122343333 11223444444444558888887653     455667788999999999  778888988889


Q ss_pred             EEEEcCCCcc
Q 004203          215 YIWRYNMREE  224 (768)
Q Consensus       215 ~IWDl~t~~~  224 (768)
                      .+.|+.++..
T Consensus       160 ~~idl~~~~~  169 (275)
T PF00780_consen  160 YLIDLNTGSP  169 (275)
T ss_pred             EEEecCCCCc
Confidence            9999997654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.42  E-value=0.42  Score=50.93  Aligned_cols=136  Identities=14%  Similarity=0.040  Sum_probs=91.0

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~~L~g---H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      ...+.+..++-++-.+.+.--|..++.+.-   -...|.+-+.- -|++++.|...|.+++.+.++|+....+..-.. |
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-v   95 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-V   95 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh-h
Confidence            344556777777777777777777664321   11222222222 477899999999999999999987776654322 2


Q ss_pred             EE-EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCe-EEEEEcC-CCCEEEEEECCeE
Q 004203          153 WV-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI-ASIAFHA-SGELLAVASGHKL  214 (768)
Q Consensus       153 ~s-VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V-~svafSP-DG~~LatgSdd~I  214 (768)
                      .+ ....+ ++.++..|+.|++.+..|.++..++...+..+.+ .+-+..| ++.+.++...|.+
T Consensus        96 k~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen   96 KVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             ccceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence            22 34556 8899999999999999999999998887655433 3345566 5554444445543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.37  E-value=0.24  Score=55.58  Aligned_cols=131  Identities=11%  Similarity=0.023  Sum_probs=80.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCCC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC-CcEEEEEc
Q 004203           82 RGLASWVEAESLHHLRPKYCPLSP--PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR-TPWVVRFH  158 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~L~g--H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g-~V~sVafS  158 (768)
                      ..++..+.++.+..+|..+++..-  .......+.  .++..|+.++.++.+..+|.++|+.+.....-.. ....... 
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-  333 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-  333 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-
Confidence            455666677888888877663211  111111122  2567888899999999999999987654432111 1222222 


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCeEE-EEEcCCCCEEEEEE-CCeEEEEEc
Q 004203          159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIAS-IAFHASGELLAVAS-GHKLYIWRY  219 (768)
Q Consensus       159 P~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~-~~V~s-vafSPDG~~LatgS-dd~I~IWDl  219 (768)
                        .+..++.++.||.|+..|..+|+.+...... ..+.+ ..+  .+..|++++ ++.++.++.
T Consensus       334 --~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        334 --YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             --ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence              2456778899999999999999988776532 22221 222  234566666 555877754

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.11  E-value=0.66  Score=49.49  Aligned_cols=151  Identities=14%  Similarity=0.130  Sum_probs=86.7

Q ss_pred             CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCC-CCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 004203          102 PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-g~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (768)
                      .+.+-...+.+++|+||.+ ++++....+.|..++. +|+.++.+.-.+ +..-.|++.- ++.++++--+++.+.++++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence            4556666799999999755 5566666889999997 478777765433 4577888876 7777777667999999998


Q ss_pred             CCCc--E----EEE--ec----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCC--CccccCCeE------eecCCCCe
Q 004203          180 STAE--C----IGS--RD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNM--REETSSPRI------VLRTRRSL  238 (768)
Q Consensus       180 ~sg~--~----i~~--l~----h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t--~~~~~~~~~------l~~h~~~V  238 (768)
                      ....  .    ...  +.    .+..+..++|+|.++.|+++-... ..+|.++.  .........      .......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            4321  1    111  22    345689999999988888877554 56666544  111000000      01123568


Q ss_pred             EEEEEccCCCeEEEEE
Q 004203          239 RAVHFHPHAAPLLLTA  254 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~  254 (768)
                      .+++++|....+++-+
T Consensus       174 S~l~~~p~t~~lliLS  189 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILS  189 (248)
T ss_dssp             -EEEEETTTTEEEEEE
T ss_pred             cceEEcCCCCeEEEEE
Confidence            9999999876555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.05  E-value=0.049  Score=65.01  Aligned_cols=133  Identities=16%  Similarity=0.240  Sum_probs=91.4

Q ss_pred             EEEEECCCCCEEEEEeC----CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203          111 IAAAFSPDGKTLASTHG----DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (768)
Q Consensus       111 tslafSPDG~~LaSgS~----DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~  186 (768)
                      +-..|+|...+|++++.    .|.|.||- ++|++.+...-. -.+.+++||| ..-.|+.|=.-|.+.+|...+.+.-.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P-~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP-VHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc-eehhhhccCh-HHHHHhhccccceeEEEecCCceeee
Confidence            34578888888887765    57788885 566654333211 1255799999 77788888889999999988765433


Q ss_pred             E-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecC--CCC--eEEEEEccCC
Q 004203          187 S-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT--RRS--LRAVHFHPHA  247 (768)
Q Consensus       187 ~-l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h--~~~--V~sVaFSPDG  247 (768)
                      . ..|..+|..+.|+++|..|+++.. +.+.+|.++.....+ ...+..|  +..  ..+...++++
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q-~~~~~~hel~~~ltl~cfRL~~~~  161 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQ-TSNIMQHELNDQLTLWCFRLSYDR  161 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccc-cchhhhhHhhceeeEEEEecCCCh
Confidence            3 458899999999999999999886 449999887544332 1123333  222  3445556664

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.97  E-value=0.66  Score=55.44  Aligned_cols=129  Identities=9%  Similarity=0.019  Sum_probs=76.8

Q ss_pred             CeEEEEECCCCCEEEEEeCC------------CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203          109 STIAAAFSPDGKTLASTHGD------------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~D------------gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL  176 (768)
                      ..+.-.|+|||+.|++....            +.+.+.+++.++...   ...+.|..+.||| ||..++... ++.|++
T Consensus       398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~V  472 (591)
T PRK13616        398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEE
Confidence            47889999999988877532            234444554443322   2345699999999 888887766 467777


Q ss_pred             ---EECCCCcEEE----Ee--cCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEeec--CCCCeEEEEE
Q 004203          177 ---WNASTAECIG----SR--DFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR--TRRSLRAVHF  243 (768)
Q Consensus       177 ---WDl~sg~~i~----~l--~h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~~l~~--h~~~V~sVaF  243 (768)
                         -....|+...    .+  .....+..+.|..++.+++...+..  ++..+++.....    .+..  ....+.+|+=
T Consensus       473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~----~~~~~n~~~~v~~vaa  548 (591)
T PRK13616        473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD----ALPSRNLSAPVVAVAA  548 (591)
T ss_pred             EEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc----ccCCCCccCceEEEec
Confidence               4444554111    12  1233468899999999664433333  544455433221    1122  2456777777


Q ss_pred             ccC
Q 004203          244 HPH  246 (768)
Q Consensus       244 SPD  246 (768)
                      +++
T Consensus       549 ~~~  551 (591)
T PRK13616        549 SPS  551 (591)
T ss_pred             CCc
Confidence            763

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.92  E-value=0.55  Score=52.72  Aligned_cols=139  Identities=7%  Similarity=-0.009  Sum_probs=85.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCCC---CCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc---
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLSPP---PRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP---  152 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~gH---~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V---  152 (768)
                      +..++.+..++.+.-+|.+++++.-.   ...+.   -+|  .+..++.+..++.|+.+|.++|+.+..+......+   
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~---ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEAL---SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCcee---cCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            45667777889999999988753321   11121   122  34567778889999999999999887775431111   


Q ss_pred             --EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC--------eEEEEEcC--CCCEEEEEE-CCeEEEEEc
Q 004203          153 --WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP--------IASIAFHA--SGELLAVAS-GHKLYIWRY  219 (768)
Q Consensus       153 --~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~--------V~svafSP--DG~~LatgS-dd~I~IWDl  219 (768)
                        .....   .+..++.+..++.+..+|..+|+.+.......+        ...+.-+|  .+..+++++ ++.++.+|.
T Consensus       197 ~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~  273 (394)
T PRK11138        197 GESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL  273 (394)
T ss_pred             CCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence              01111   123566677889999999999987665432111        11111222  234454444 667999999


Q ss_pred             CCCccc
Q 004203          220 NMREET  225 (768)
Q Consensus       220 ~t~~~~  225 (768)
                      .+++..
T Consensus       274 ~tG~~~  279 (394)
T PRK11138        274 RSGQIV  279 (394)
T ss_pred             CCCCEE
Confidence            888653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.72  E-value=1.7  Score=52.78  Aligned_cols=144  Identities=17%  Similarity=0.090  Sum_probs=101.5

Q ss_pred             cCCCEEEEEeCCCe-----EEEEeCCCC-----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe-
Q 004203           79 DARRGLASWVEAES-----LHHLRPKYC-----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID-  135 (768)
Q Consensus        79 d~g~~LvSgs~Dgs-----IrlWd~~t~-----------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWD-  135 (768)
                      ++...|++.++|+.     +++|+++.-                 +......++.+++.+.|-+.+|.|=.+|.|..+. 
T Consensus        75 ~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G  154 (933)
T KOG2114|consen   75 NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG  154 (933)
T ss_pred             cCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence            34457777776664     899998632                 0112356789999999999999999999999994 


Q ss_pred             -C--CCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEec-CCCCeEEEEEcCCCCEEEEEE
Q 004203          136 -C--QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSRD-FYRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       136 -l--~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l~-h~~~V~svafSPDG~~LatgS  210 (768)
                       +  +.|........-+.+|+.+.+.- ++..++.+..-..|.+|.+....+ ...+. +....+|..|++....+++++
T Consensus       155 Di~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~  233 (933)
T KOG2114|consen  155 DILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG  233 (933)
T ss_pred             cchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec
Confidence             2  11222233333457899999988 676645555566799999985442 33344 455888888888777788888


Q ss_pred             CCeEEEEEcCCCc
Q 004203          211 GHKLYIWRYNMRE  223 (768)
Q Consensus       211 dd~I~IWDl~t~~  223 (768)
                      +..+.+||.+..+
T Consensus       234 ~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  234 SEFLYFYDSDGRG  246 (933)
T ss_pred             CceEEEEcCCCcc
Confidence            8889999987554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.68  E-value=0.6  Score=57.96  Aligned_cols=148  Identities=12%  Similarity=0.076  Sum_probs=95.3

Q ss_pred             CCeEEEEECCCCCEEEE--EeCCCeEEEEeCCCCeE-----EEEEecC------CCCcEEEEEccCCCCEEEEEeCCCeE
Q 004203          108 RSTIAAAFSPDGKTLAS--THGDHTVKIIDCQTGSC-----LKVLHGH------RRTPWVVRFHPLNPTIIASGSLDHEV  174 (768)
Q Consensus       108 ~~VtslafSPDG~~LaS--gS~DgtVrVWDl~tg~~-----l~~l~gH------~g~V~sVafSP~dg~lLaSgS~DgtV  174 (768)
                      -.|..+..++|+...++  .+++-.|+.||+++-..     ..-|..|      ..-..++.|.|.-..-.+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            35677777778765543  44556899999976422     1222222      23355788998545566777889989


Q ss_pred             EEEECCCCc-EEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          175 RLWNASTAE-CIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       175 rLWDl~sg~-~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                      ++..+.--. ....+......++++|+|.|+.++.|-.++ +.-|..........+..-......|.+|.|-....++++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            888776433 233456777899999999999999998554 666654333211111111112578999999988887776


Q ss_pred             EEe
Q 004203          253 TAE  255 (768)
Q Consensus       253 S~s  255 (768)
                      -+.
T Consensus       261 y~n  263 (1405)
T KOG3630|consen  261 YGN  263 (1405)
T ss_pred             ecc
Confidence            554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.35  E-value=5  Score=44.18  Aligned_cols=144  Identities=13%  Similarity=0.157  Sum_probs=92.3

Q ss_pred             CCeEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC-CCeEE
Q 004203          108 RSTIAAAFSPDGKTLASTHG-----------DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVR  175 (768)
Q Consensus       108 ~~VtslafSPDG~~LaSgS~-----------DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~-DgtVr  175 (768)
                      ..-+++...|+|.+-++...           -|.|+.+|. .+..++.+.++-..-+.++||| |++.++.+.. .+.|+
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~  188 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIH  188 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEE
Confidence            34678889999987775443           244666665 5677777777666678899999 7766666554 47888


Q ss_pred             EEECCC--CcE----EEE-e-cCCCCeEEEEEcCCCCEEEEEECC--eEEEEEcCCCccccCCeEeecCCCCeEEEEEc-
Q 004203          176 LWNAST--AEC----IGS-R-DFYRPIASIAFHASGELLAVASGH--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-  244 (768)
Q Consensus       176 LWDl~s--g~~----i~~-l-~h~~~V~svafSPDG~~LatgSdd--~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFS-  244 (768)
                      -|++..  +..    ... + ...+..-.++...+|.+.+.+-.+  +|.+|+.+ ++...   .+.-....+.+++|- 
T Consensus       189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~---~i~lP~~~~t~~~FgG  264 (307)
T COG3386         189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG---EIKLPVKRPTNPAFGG  264 (307)
T ss_pred             EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE---EEECCCCCCccceEeC
Confidence            888762  211    111 1 134555667888888877544433  69999988 55433   333334677788875 


Q ss_pred             cCCCeEEEEEeeC
Q 004203          245 PHAAPLLLTAEVN  257 (768)
Q Consensus       245 PDG~~LlaS~svw  257 (768)
                      |+.+.|.+++...
T Consensus       265 ~~~~~L~iTs~~~  277 (307)
T COG3386         265 PDLNTLYITSARS  277 (307)
T ss_pred             CCcCEEEEEecCC
Confidence            4567676666544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.16  E-value=1.3  Score=49.53  Aligned_cols=136  Identities=12%  Similarity=0.082  Sum_probs=74.7

Q ss_pred             CeEEEEECCCCCEEEEEe-----------CCC-eEEEEeCCC--Ce--EEEEEecCCCCcEEEEEccCCCCEEEEEeCCC
Q 004203          109 STIAAAFSPDGKTLASTH-----------GDH-TVKIIDCQT--GS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH  172 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS-----------~Dg-tVrVWDl~t--g~--~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg  172 (768)
                      ....++|.++|+++++-.           ..+ .|.+++-.+  |+  ....|.........+++.+ ++ +++ ++.+.
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~   91 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD   91 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe
Confidence            456789999998877653           223 677776432  33  2344443344567899988 66 444 44444


Q ss_pred             eEEEEECCCC-----cE--E-EEecC-----CCCeEEEEEcCCCCEEEEEEC--------------------CeEEEEEc
Q 004203          173 EVRLWNASTA-----EC--I-GSRDF-----YRPIASIAFHASGELLAVASG--------------------HKLYIWRY  219 (768)
Q Consensus       173 tVrLWDl~sg-----~~--i-~~l~h-----~~~V~svafSPDG~~LatgSd--------------------d~I~IWDl  219 (768)
                      .+++.|....     +.  + ..+..     ......++|.|||.+.++-++                    +.|..+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3344455321     21  1 11222     234678999999986554331                    12444444


Q ss_pred             CCCccccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Ll  251 (768)
                      +..+.    ..+...-.....++|+|+|+.++
T Consensus       172 dg~~~----e~~a~G~rnp~Gl~~d~~G~l~~  199 (367)
T TIGR02604       172 DGGKL----RVVAHGFQNPYGHSVDSWGDVFF  199 (367)
T ss_pred             CCCeE----EEEecCcCCCccceECCCCCEEE
Confidence            43332    12222334566788888887543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.03  E-value=7.4  Score=42.37  Aligned_cols=169  Identities=17%  Similarity=0.189  Sum_probs=103.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECC-CCCEEEEEeCCCe-EEEEeCCCCeEEEEEecCCCCcE-
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSP-DGKTLASTHGDHT-VKIIDCQTGSCLKVLHGHRRTPW-  153 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~VtslafSP-DG~~LaSgS~Dgt-VrVWDl~tg~~l~~l~gH~g~V~-  153 (768)
                      ..++...++..+++|++..--.       -......++|+| ..+-++.+-.-|+ ..++|.++.+...++...++.-. 
T Consensus        44 ~~dgs~g~a~~~eaGk~v~~~~-------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfy  116 (366)
T COG3490          44 ARDGSFGAATLSEAGKIVFATA-------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFY  116 (366)
T ss_pred             ccCCceeEEEEccCCceeeeee-------cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceee
Confidence            3456667778888887643222       122345677888 4455666655444 67889888776655543322211 


Q ss_pred             -EEEEccCCCCEEEEEeCC-----CeEEEEECCCC-cEEEEec-CCCCeEEEEEcCCCCEEEEEECCe------------
Q 004203          154 -VVRFHPLNPTIIASGSLD-----HEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGHK------------  213 (768)
Q Consensus       154 -sVafSP~dg~lLaSgS~D-----gtVrLWDl~sg-~~i~~l~-h~~~V~svafSPDG~~LatgSdd~------------  213 (768)
                       .-.||| ||.+|+..-.|     |.|=|||.+.+ +.+..+. |.-.-..+.|.+||+.|+.+.++-            
T Consensus       117 GHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN  195 (366)
T COG3490         117 GHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN  195 (366)
T ss_pred             cccccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccc
Confidence             247899 99988876554     58999999843 2222333 444567799999999988775421            


Q ss_pred             -------EEEEEcCCCccccCCeEee--cCCCCeEEEEEccCCCeEEEEEe
Q 004203          214 -------LYIWRYNMREETSSPRIVL--RTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       214 -------I~IWDl~t~~~~~~~~~l~--~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                             +.+.|..+++.+.+ ..+.  .+.-.|+.+...+||. +.+++.
T Consensus       196 ldsMePSlvlld~atG~liek-h~Lp~~l~~lSiRHld~g~dgt-vwfgcQ  244 (366)
T COG3490         196 LDSMEPSLVLLDAATGNLIEK-HTLPASLRQLSIRHLDIGRDGT-VWFGCQ  244 (366)
T ss_pred             hhhcCccEEEEeccccchhhh-ccCchhhhhcceeeeeeCCCCc-EEEEEE
Confidence                   33444444443331 1122  2456789999999998 666655

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.69  E-value=1.1  Score=53.68  Aligned_cols=111  Identities=17%  Similarity=0.199  Sum_probs=75.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE--EEecCCCCcEEEEEc--cCCCCEEEEEeCCCeEEEEECC---
Q 004203          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLHGHRRTPWVVRFH--PLNPTIIASGSLDHEVRLWNAS---  180 (768)
Q Consensus       108 ~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--~l~gH~g~V~sVafS--P~dg~lLaSgS~DgtVrLWDl~---  180 (768)
                      ....-+.-|.-++.-++-+....+.|||.+.+....  .| ...+.|.++.|.  | +++.+++.+..+.|.+|--.   
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEccchh
Confidence            344555555555555555556789999999887442  33 346779999985  5 78888888888889888432   


Q ss_pred             --C----CcEEEEe---cC-CCCeEEEEEcCCCCEEEEEECCeEEEEEcCC
Q 004203          181 --T----AECIGSR---DF-YRPIASIAFHASGELLAVASGHKLYIWRYNM  221 (768)
Q Consensus       181 --s----g~~i~~l---~h-~~~V~svafSPDG~~LatgSdd~I~IWDl~t  221 (768)
                        .    ...++.+   .+ ..+|.+..|.++|. |++++++.+.|+|-.-
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~dk~~  157 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFDKWL  157 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEECCCc
Confidence              1    1233333   23 36899999999985 5667788899887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.66  E-value=0.59  Score=53.99  Aligned_cols=136  Identities=18%  Similarity=0.146  Sum_probs=91.4

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCC--EE-----EEEeCCCeEEEEeCCCC-e-EEEEEecC
Q 004203           82 RGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGK--TL-----ASTHGDHTVKIIDCQTG-S-CLKVLHGH  148 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~L----~gH~~~VtslafSPDG~--~L-----aSgS~DgtVrVWDl~tg-~-~l~~l~gH  148 (768)
                      -.+.++.+...++..|++++++    +-|.. |+-+.+.||.+  .|     +.|-.|..|..||.+-. + .+..-++|
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            3444566666777777777743    23444 88888888654  22     35666889999997632 2 23333333


Q ss_pred             C----CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-e-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCC
Q 004203          149 R----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHKLYIWRYNM  221 (768)
Q Consensus       149 ~----g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t  221 (768)
                      .    ....|.+-.  ...+|+.|+.+|.|||||- .+..-++ + +...+|.-+..+.||++|+..++..+.+.|+.-
T Consensus       426 qy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  426 QYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI  501 (644)
T ss_pred             ccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence            2    224443332  5668999999999999997 4444333 2 466799999999999999999988888887654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.57  E-value=0.6  Score=53.93  Aligned_cols=134  Identities=13%  Similarity=0.112  Sum_probs=91.6

Q ss_pred             CCCCCEEE-EEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCC-------EEEEEeCCCeEEEEECCCCcE--E
Q 004203          116 SPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-------IIASGSLDHEVRLWNASTAEC--I  185 (768)
Q Consensus       116 SPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~-------lLaSgS~DgtVrLWDl~sg~~--i  185 (768)
                      ..+.++|+ ++..-..++-.|++.|+.+...+-+.. |.-+.+.| +.+       .-+.|-.|+.|.-||.+-...  +
T Consensus       342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCccee
Confidence            33445544 445566789999999999999987776 77677777 432       223466788899999984222  1


Q ss_pred             EE-----ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          186 GS-----RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       186 ~~-----l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..     +.......|.+-..+| +|++|+ +|.|++||--....   ...+.+-...|..|..+.||++|++++.
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~A---KTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRA---KTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhh---hhcccccCCceeeEEeeccCcEEEEecc
Confidence            11     1123355666666666 566666 66699999732222   2356667889999999999999999987

>PRK10115 protease 2; Provisional

Probab=93.56  E-value=2.4  Score=51.63  Aligned_cols=110  Identities=10%  Similarity=0.047  Sum_probs=69.1

Q ss_pred             CCeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCeEE-EEEecCCCCcEEEEEccCCCCEEEEEeCC------CeEE
Q 004203          108 RSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCL-KVLHGHRRTPWVVRFHPLNPTIIASGSLD------HEVR  175 (768)
Q Consensus       108 ~~VtslafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l-~~l~gH~g~V~sVafSP~dg~lLaSgS~D------gtVr  175 (768)
                      -.+..+.|||||++|+.+..     ..+|++.|+.+|+.+ ..+.+ ..  ..++|.+ |++.|+....+      ..|+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEee-CCCEEEEEEecCCCCCCCEEE
Confidence            45778999999999886533     457999999988643 22222 11  4589999 66655554332      3788


Q ss_pred             EEECCCC--cEEEEecC-CCCeE-EEEEcCCCCEEEEEEC----CeEEEEEcCC
Q 004203          176 LWNASTA--ECIGSRDF-YRPIA-SIAFHASGELLAVASG----HKLYIWRYNM  221 (768)
Q Consensus       176 LWDl~sg--~~i~~l~h-~~~V~-svafSPDG~~LatgSd----d~I~IWDl~t  221 (768)
                      ++++.++  +....+.. ..... .+..+.|+++++..+.    ..+.+|+...
T Consensus       203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~  256 (686)
T PRK10115        203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL  256 (686)
T ss_pred             EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence            9999988  33333432 22233 3333448887665552    2388888644

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.42  E-value=0.029  Score=65.31  Aligned_cols=131  Identities=16%  Similarity=0.208  Sum_probs=88.3

Q ss_pred             CCCeEEEEeCCCC--------CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEcc
Q 004203           89 EAESLHHLRPKYC--------PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP  159 (768)
Q Consensus        89 ~DgsIrlWd~~t~--------~L~g-H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP  159 (768)
                      .|..+.+||..+.        .|.+ -.....+++|-.|.+++.+|.....++++|++... .....-.+..+..+...|
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp  205 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDP  205 (783)
T ss_pred             ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecC
Confidence            4667999999865        2333 44456789999999999999999999999987321 111111233455677778


Q ss_pred             CCCCEEEEEeCCCeEEEEEC-CC-CcEEEEecC-----CCCeEEEEEcCCCC-EEEEEECC--eEEEEEcCC
Q 004203          160 LNPTIIASGSLDHEVRLWNA-ST-AECIGSRDF-----YRPIASIAFHASGE-LLAVASGH--KLYIWRYNM  221 (768)
Q Consensus       160 ~dg~lLaSgS~DgtVrLWDl-~s-g~~i~~l~h-----~~~V~svafSPDG~-~LatgSdd--~I~IWDl~t  221 (768)
                      ..++++++-. |+.|-+||. ++ ..++..+.+     ...+..++|+|... .+++.+.+  .|+++|+..
T Consensus       206 ~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  206 FSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            7778888766 899999993 32 222222222     23589999999654 55556644  399999864

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.39  E-value=2.1  Score=45.82  Aligned_cols=128  Identities=9%  Similarity=-0.019  Sum_probs=86.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeE-EE
Q 004203          119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SI  197 (768)
Q Consensus       119 G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~-sv  197 (768)
                      ..+++.|+..+.++-.|..+|+....-. -+..+.+-+.-  -+++++.|...+.+++.+.++|+....+...+.|. ..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            4577888999999999999998764432 22334432222  36789999999999999999998777765444443 24


Q ss_pred             EEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEcc-CCCeEEE
Q 004203          198 AFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP-HAAPLLL  252 (768)
Q Consensus       198 afSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSP-DG~~Lla  252 (768)
                      ...+++..+..++.| ..+..|.++...+.   +..-......+-+..| ++..+++
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVy---kskcgG~~f~sP~i~~g~~sly~a  153 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVY---KSKCGGGTFVSPVIAPGDGSLYAA  153 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEE---ecccCCceeccceecCCCceEEEE
Confidence            457889999999955 59999999887644   2111222233444555 5554443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.27  E-value=6.3  Score=43.34  Aligned_cols=148  Identities=14%  Similarity=0.108  Sum_probs=77.0

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC-CC
Q 004203          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA-ST  181 (768)
Q Consensus       103 L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl-~s  181 (768)
                      ..+-.+.+..+.-++||+++++++.-....-||--...-...-+.....|..+.|.| ++.+.+. .+.+.|+.=|. ..
T Consensus       140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~-~~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWML-ARGGQIQFSDDPDD  217 (302)
T ss_dssp             E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEE-ETTTEEEEEE-TTE
T ss_pred             ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEE-eCCcEEEEccCCCC
Confidence            345567899999999999998887766667787532212222233457899999999 7776564 48888988872 22


Q ss_pred             CcEEEE--ec--CC-CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          182 AECIGS--RD--FY-RPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       182 g~~i~~--l~--h~-~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .+....  ..  .. ..+..++|.+++...++++.+.+. ...+.++.-........-...++.|.|.++.+-++.+
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG  293 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG  293 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence            222211  11  22 247899999999988887777543 3444444322011111235578888987776655543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.25  E-value=10  Score=40.55  Aligned_cols=179  Identities=11%  Similarity=0.095  Sum_probs=91.7

Q ss_pred             eeecCCCCeEEEEEecCCCEEEEEeCCCeE-EEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--
Q 004203           64 RKCSGSFSQIFEAGRDARRGLASWVEAESL-HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--  140 (768)
Q Consensus        64 ~~~s~s~~~l~~a~~d~g~~LvSgs~DgsI-rlWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~--  140 (768)
                      ..++++... +++..+....|+..+.+|.| +.+.+     .+ .+-..+|++.-++.++++--.++.+.++++....  
T Consensus        27 LTy~pd~~t-LfaV~d~~~~i~els~~G~vlr~i~l-----~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   27 LTYNPDTGT-LFAVQDEPGEIYELSLDGKVLRRIPL-----DG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             EEEETTTTE-EEEEETTTTEEEEEETT--EEEEEE------SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cEEcCCCCe-EEEEECCCCEEEEEcCCCCEEEEEeC-----CC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            345555444 44455666777777776553 33333     22 3567899998888777766568999999883321  


Q ss_pred             ----EEEEEe-----cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC---CcEEEE-----ec----CCCCeEEEEE
Q 004203          141 ----CLKVLH-----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---AECIGS-----RD----FYRPIASIAF  199 (768)
Q Consensus       141 ----~l~~l~-----gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s---g~~i~~-----l~----h~~~V~svaf  199 (768)
                          ....+.     .++..+-.++|.| .++.|+.+....-..||.++.   ......     +.    .-..+..+++
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~  178 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY  178 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence                111221     2345588999999 555555566665555665543   222111     11    3346789999


Q ss_pred             cCCCCEEEEEECC--eEEEEEcCCCccccCCeEeec-------CCCCeEEEEEccCCCeEEE
Q 004203          200 HASGELLAVASGH--KLYIWRYNMREETSSPRIVLR-------TRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       200 SPDG~~LatgSdd--~I~IWDl~t~~~~~~~~~l~~-------h~~~V~sVaFSPDG~~Lla  252 (768)
                      +|....|+.-|+.  .|..+|. +++... ...+..       .-...-.|+|.++|+.+++
T Consensus       179 ~p~t~~lliLS~es~~l~~~d~-~G~~~~-~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  179 DPRTGHLLILSDESRLLLELDR-QGRVVS-SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             ETTTTEEEEEETTTTEEEEE-T-T--EEE-EEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred             cCCCCeEEEEECCCCeEEEECC-CCCEEE-EEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence            9987766666643  3888883 443222 112221       1135789999999985443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=93.12  E-value=1.7  Score=47.76  Aligned_cols=104  Identities=18%  Similarity=0.194  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCC--C----eE-EEEEecCCCCcEEEEEccCCCCEEEEEeCCC-eEE
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQT--G----SC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDH-EVR  175 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~t--g----~~-l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg-tVr  175 (768)
                      .|-..-++++||||++.|+.+-. .+.|..|++..  +    +. ...+....+..-.++... ++.+.+++-.+| .|.
T Consensus       160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~  238 (307)
T COG3386         160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVV  238 (307)
T ss_pred             CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEE
Confidence            34445679999999999888766 48899998752  2    11 122223445666677777 788776555554 899


Q ss_pred             EEECCCCcEEEEecCC-CCeEEEEEc-CCCCEEEEEE
Q 004203          176 LWNASTAECIGSRDFY-RPIASIAFH-ASGELLAVAS  210 (768)
Q Consensus       176 LWDl~sg~~i~~l~h~-~~V~svafS-PDG~~LatgS  210 (768)
                      .|+.. |+.+..+... ..+++++|- |+.+.|++.+
T Consensus       239 ~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         239 RFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            99998 8888887765 778888884 4566665555

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=92.93  E-value=1.5  Score=53.88  Aligned_cols=129  Identities=13%  Similarity=0.101  Sum_probs=84.8

Q ss_pred             CCCeEEEEeCCCCCC----CCCCCC-eEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCe--EEE-EEe--cCCCCcE
Q 004203           89 EAESLHHLRPKYCPL----SPPPRS-TIAAAFSP-----DGKTLASTHGDHTVKIIDCQTGS--CLK-VLH--GHRRTPW  153 (768)
Q Consensus        89 ~DgsIrlWd~~t~~L----~gH~~~-VtslafSP-----DG~~LaSgS~DgtVrVWDl~tg~--~l~-~l~--gH~g~V~  153 (768)
                      ....|...|++++++    ..|... |..++-..     +....+.|-.+..+..||.+-..  ++. ..+  ..+....
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            455677777777642    234332 55543321     12345677888899999987532  221 111  1233466


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-e-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHKLYIWRYN  220 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~  220 (768)
                      |++-..  ..+||.|+.+|.|||||- .|+.-++ + +...+|..++.+.||++|+..++.-|.+++..
T Consensus       582 ~~aTt~--~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  582 CFATTE--DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             EEEecC--CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            665544  567999999999999994 4433222 3 35689999999999999999998888888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.82  E-value=6.7  Score=42.28  Aligned_cols=110  Identities=16%  Similarity=0.150  Sum_probs=67.3

Q ss_pred             eEEEEECCCCCEEEEEeCCC--eEEEEeCCCCeEEEEEecCCC-CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203          110 TIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRR-TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (768)
Q Consensus       110 VtslafSPDG~~LaSgS~Dg--tVrVWDl~tg~~l~~l~gH~g-~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~  186 (768)
                      .-++.|..||.++-+.+.-|  .|+.+|+++|+......-... ---.++..  ++++..-.=.++...+||..+-+.+.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence            56888877888888877755  799999999987655442221 11123333  24444445567888999999888888


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCc
Q 004203          187 SRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMRE  223 (768)
Q Consensus       187 ~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~  223 (768)
                      .+...+.=..++  .||+.|+.+. .++|+++|..+-+
T Consensus       125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~  160 (264)
T PF05096_consen  125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK  160 (264)
T ss_dssp             EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred             EEecCCcceEEE--cCCCEEEEECCccceEEECCcccc
Confidence            876665555555  4555555443 4558888876543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.64  E-value=2.5  Score=46.09  Aligned_cols=130  Identities=8%  Similarity=0.068  Sum_probs=75.2

Q ss_pred             CCEEEEEeC----------CCeEEEEeCCCC----eEEEEE--ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 004203          119 GKTLASTHG----------DHTVKIIDCQTG----SCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (768)
Q Consensus       119 G~~LaSgS~----------DgtVrVWDl~tg----~~l~~l--~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg  182 (768)
                      ..+|+.|..          .|.|.++++...    ..++.+  ....++|++++--.  +. ++.+. .+.|++|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCc
Confidence            467776654          288999999884    222222  23467888887653  44 44333 478999999988


Q ss_pred             c-EEEEec--CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          183 E-CIGSRD--FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       183 ~-~i~~l~--h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      + ....-.  ....+.++...  +.+|++|. .+++.++.++................++.++.|-+|++.++++-
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D  191 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD  191 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred             ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence            7 544433  33455555554  56888887 45577775554222111112222356688999987776555443

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.37  E-value=1.9  Score=50.68  Aligned_cols=140  Identities=12%  Similarity=0.224  Sum_probs=85.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEe---CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccC---CCCEEEEEeCCCeEEEEEC
Q 004203          106 PPRSTIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL---NPTIIASGSLDHEVRLWNA  179 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS---~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~---dg~lLaSgS~DgtVrLWDl  179 (768)
                      --.+|.+++|. ||+.++-..   ..|.++.=|   .+.+..|    ..|..+.|.|-   +..-++.....+.|.+|.+
T Consensus        18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             hhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            34578999998 787765332   133333322   1233333    34888999983   1235666677789999998


Q ss_pred             CC-----CcEEEE--ecCCC--Ce--EEEEEcCCCCEEEEEECCeE-EEEEcCCCccccCCeEeecCCCCeEEEEEccCC
Q 004203          180 ST-----AECIGS--RDFYR--PI--ASIAFHASGELLAVASGHKL-YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA  247 (768)
Q Consensus       180 ~s-----g~~i~~--l~h~~--~V--~svafSPDG~~LatgSdd~I-~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG  247 (768)
                      .-     ++.+..  -....  ++  ..+.|||....|++-....+ .+++++.... + ...-....+-|.+.+|.+||
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-r-VkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-R-VKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-e-EEEeccCCceEEEEEecCcC
Confidence            62     222211  11211  22  35789999999998886654 4555544332 1 11234567889999999999


Q ss_pred             CeEEEEEe
Q 004203          248 APLLLTAE  255 (768)
Q Consensus       248 ~~LlaS~s  255 (768)
                      +.|+++.+
T Consensus       168 ~RLVVAvG  175 (671)
T PF15390_consen  168 QRLVVAVG  175 (671)
T ss_pred             CEEEEEeC
Confidence            98887654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.83  E-value=0.73  Score=56.97  Aligned_cols=96  Identities=18%  Similarity=0.171  Sum_probs=68.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC--CC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYC--PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~--~L---~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ...++.++..|.|-..|....  .+   ..-.++|++++|+.||++++.|-.+|.|.+||+.+++..+.+..|+.+...+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            344666666666665555432  11   1235689999999999999999999999999999999999998887765554


Q ss_pred             E---EccCCCCEEEEEeCCCeEEEEEC
Q 004203          156 R---FHPLNPTIIASGSLDHEVRLWNA  179 (768)
Q Consensus       156 a---fSP~dg~lLaSgS~DgtVrLWDl  179 (768)
                      -   +.. ++..++++..-|.  +|.+
T Consensus       179 i~v~~t~-~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTS-QNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeC-CCcEEEEccCCCc--eEEE
Confidence            3   333 3446777776665  4543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=91.40  E-value=0.57  Score=37.17  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=30.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE
Q 004203          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (768)
Q Consensus       107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~  141 (768)
                      ...|..++|+|...+||.+..||.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            446999999999999999999999999998 5554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=91.35  E-value=1  Score=47.24  Aligned_cols=101  Identities=11%  Similarity=0.054  Sum_probs=64.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEE-EECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-CC
Q 004203           79 DARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAA-AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RT  151 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~Vtsl-afSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-g~  151 (768)
                      .....++.|..++.|.+|+....     .+..-...|.+. .--.++.+..+++.|+.|+.|+++-++.+.....|+ ..
T Consensus        68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~  147 (238)
T KOG2444|consen   68 TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES  147 (238)
T ss_pred             ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence            45678889999999999988621     111222233332 223366688899999999999999888887777777 33


Q ss_pred             cEEEEEccCCCCEEEEE--eCCCeEEEEECC
Q 004203          152 PWVVRFHPLNPTIIASG--SLDHEVRLWNAS  180 (768)
Q Consensus       152 V~sVafSP~dg~lLaSg--S~DgtVrLWDl~  180 (768)
                      +.....+. .++.+++.  |.|..++.|++.
T Consensus       148 ~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  148 GEELIVVG-SDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cceeEEec-CCceEEeeccccchhhhhcchh
Confidence            33333333 34444444  555555556554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=91.25  E-value=4.5  Score=38.06  Aligned_cols=93  Identities=12%  Similarity=0.044  Sum_probs=64.9

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPL-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF  157 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L-~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVaf  157 (768)
                      ++...|+.+++|..|++|+-+.... ..-...|+++.-... ..|+.+-.+|+|-+|+-  .+.+..++.. ..+.++.+
T Consensus        13 dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK-~~~~~~~~   88 (111)
T PF14783_consen   13 DGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSK-NQVTSMAF   88 (111)
T ss_pred             CCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccC-CCeEEEEE
Confidence            4568999999999999999875421 123456777776654 67899999999999985  3445555543 33667666


Q ss_pred             ccCCC---CEEEEEeCCCeEE
Q 004203          158 HPLNP---TIIASGSLDHEVR  175 (768)
Q Consensus       158 SP~dg---~lLaSgS~DgtVr  175 (768)
                      ...++   ..|++|-.+|.|-
T Consensus        89 ~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   89 YDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EcCCCCCceEEEEEecCCeEE
Confidence            54232   3688888888663

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.17  E-value=9.7  Score=42.00  Aligned_cols=146  Identities=16%  Similarity=0.185  Sum_probs=90.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCe------EEEEeCCC--C--eEE-----EEEecCCC--------CcEEEEEccCCC
Q 004203          106 PPRSTIAAAFSPDGKTLASTHGDHT------VKIIDCQT--G--SCL-----KVLHGHRR--------TPWVVRFHPLNP  162 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~Dgt------VrVWDl~t--g--~~l-----~~l~gH~g--------~V~sVafSP~dg  162 (768)
                      .-+.+.++.+.+++..++..++++.      ++.+++..  +  ..+     ..++...+        ..-.|++.+ ++
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g   96 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG   96 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence            3456889999976777777888887      66666543  1  111     12222222        233688855 88


Q ss_pred             CEEEEEeCC------CeEEEEECCCCcEEEEe----------------cCCCCeEEEEEcCCCCEEEEEEC------C--
Q 004203          163 TIIASGSLD------HEVRLWNASTAECIGSR----------------DFYRPIASIAFHASGELLAVASG------H--  212 (768)
Q Consensus       163 ~lLaSgS~D------gtVrLWDl~sg~~i~~l----------------~h~~~V~svafSPDG~~LatgSd------d--  212 (768)
                      .++++.-.+      ..|+.+|.. |+.+..+                ..+.....++++|||+.|++...      +  
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            888888778      889999876 5554332                23456889999999997666541      1  


Q ss_pred             e-------EEEEEcCCCc---cccCCeEeec------CCCCeEEEEEccCCCeEEEE
Q 004203          213 K-------LYIWRYNMRE---ETSSPRIVLR------TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       213 ~-------I~IWDl~t~~---~~~~~~~l~~------h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .       ++++.++...   ..........      ....|..+.+-++++.++.-
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence            1       4555554332   1111111111      35678999999999966654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.93  E-value=2.6  Score=44.86  Aligned_cols=100  Identities=13%  Similarity=0.081  Sum_probs=61.8

Q ss_pred             CcEEEEEccCCCCEEEEEe---CCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEE-cCCCccc
Q 004203          151 TPWVVRFHPLNPTIIASGS---LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWR-YNMREET  225 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS---~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWD-l~t~~~~  225 (768)
                      .+...++++ +++.++...   ....|+++...  ...........+..-.|++++...++..+.. .+++. ...++..
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            578899999 777666655   22355555543  3333332444788889999988777666443 55553 2333321


Q ss_pred             cCCeEeecC--CCCeEEEEEccCCCeEEEEEe
Q 004203          226 SSPRIVLRT--RRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       226 ~~~~~l~~h--~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .  ..+...  ...|..+.+||||..++....
T Consensus       102 ~--~~v~~~~~~~~I~~l~vSpDG~RvA~v~~  131 (253)
T PF10647_consen  102 P--VEVDWPGLRGRITALRVSPDGTRVAVVVE  131 (253)
T ss_pred             e--EEecccccCCceEEEEECCCCcEEEEEEe
Confidence            1  122211  228999999999999887663

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.92  E-value=29  Score=40.11  Aligned_cols=175  Identities=14%  Similarity=0.150  Sum_probs=83.6

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCCCCC--------C---CC----CCeEEEEECCCCCEEEEEeC------CCeEEEEeCC
Q 004203           80 ARRGLASWV-EAESLHHLRPKYCPLS--------P---PP----RSTIAAAFSPDGKTLASTHG------DHTVKIIDCQ  137 (768)
Q Consensus        80 ~g~~LvSgs-~DgsIrlWd~~t~~L~--------g---H~----~~VtslafSPDG~~LaSgS~------DgtVrVWDl~  137 (768)
                      .+++|+..+ ....|.+.|..+..-.        .   +.    ..-..+-.-|+|+.++|+-.      -|-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            455555554 7778999998754211        0   00    11233444578999888643      3568889988


Q ss_pred             CCeEEEEEecCC---CCcEEEEEccCCCCEEEEEeC--------------------CCeEEEEECCCCcEEEEecCCC--
Q 004203          138 TGSCLKVLHGHR---RTPWVVRFHPLNPTIIASGSL--------------------DHEVRLWNASTAECIGSRDFYR--  192 (768)
Q Consensus       138 tg~~l~~l~gH~---g~V~sVafSP~dg~lLaSgS~--------------------DgtVrLWDl~sg~~i~~l~h~~--  192 (768)
                      +.+.........   .--+.+-|.| ..+.++|...                    -.++.+||+.+.+.++++....  
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            888777765433   2345678889 8888888652                    2489999999999999976542  


Q ss_pred             -CeEEEEE--cCCCCEEEEEE--CCeEEEEEc-CCCccccCCe-Eee-----c------------CCCCeEEEEEccCCC
Q 004203          193 -PIASIAF--HASGELLAVAS--GHKLYIWRY-NMREETSSPR-IVL-----R------------TRRSLRAVHFHPHAA  248 (768)
Q Consensus       193 -~V~svaf--SPDG~~LatgS--dd~I~IWDl-~t~~~~~~~~-~l~-----~------------h~~~V~sVaFSPDG~  248 (768)
                       ....+.|  .|+..+=++++  ..+|..|-- +.++-..+.. .+.     +            ...-|+.|..|.|.+
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence             3345555  45566555555  444554433 3332211000 000     0            023479999999999


Q ss_pred             eEEEEEe
Q 004203          249 PLLLTAE  255 (768)
Q Consensus       249 ~LlaS~s  255 (768)
                      +|.++.-
T Consensus       325 fLYvs~W  331 (461)
T PF05694_consen  325 FLYVSNW  331 (461)
T ss_dssp             EEEEEET
T ss_pred             EEEEEcc
Confidence            8888764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.89  E-value=29  Score=39.65  Aligned_cols=169  Identities=13%  Similarity=0.121  Sum_probs=86.1

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCCC---C-------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-
Q 004203           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP---L-------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-  140 (768)
Q Consensus        72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~---L-------~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-  140 (768)
                      .++.........|+...+||.++++|.....   +       .-....|....+..+|-.+.+  .++.+++.+-.... 
T Consensus        82 ~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~  159 (410)
T PF04841_consen   82 RIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPV  159 (410)
T ss_pred             CEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccc
Confidence            3444444567888888999999999985221   0       111122223344445533333  34445444322211 


Q ss_pred             EEEEEe---cCCC------CcEE-EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004203          141 CLKVLH---GHRR------TPWV-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       141 ~l~~l~---gH~g------~V~s-VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS  210 (768)
                      ..+.+.   +...      .... ..++. +....+....++.+.+.+-...+.   +...+++..++.||+|++||.-.
T Consensus       160 ~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t  235 (410)
T PF04841_consen  160 KLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFT  235 (410)
T ss_pred             hhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEE
Confidence            111111   1000      0000 12333 333344444444555333322111   33456899999999999999888


Q ss_pred             C-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCC
Q 004203          211 G-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA  248 (768)
Q Consensus       211 d-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~  248 (768)
                      + +.+.+...+-.+...  ..-.........+.|.-+..
T Consensus       236 ~~g~l~v~ssDf~~~~~--e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  236 DSGNLWVVSSDFSEKLC--EFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             CCCCEEEEECcccceeE--EeecCcCCCCcEEEEECCCc
Confidence            5 458888765554322  11222345677888887765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.75  E-value=50  Score=40.95  Aligned_cols=149  Identities=16%  Similarity=0.174  Sum_probs=95.2

Q ss_pred             CCCCCeEEEEEC---C--C--CCEEEEEeCCCeEEEEeC------CC---------CeEEEEEec---CCCCcEEEEEcc
Q 004203          105 PPPRSTIAAAFS---P--D--GKTLASTHGDHTVKIIDC------QT---------GSCLKVLHG---HRRTPWVVRFHP  159 (768)
Q Consensus       105 gH~~~VtslafS---P--D--G~~LaSgS~DgtVrVWDl------~t---------g~~l~~l~g---H~g~V~sVafSP  159 (768)
                      .-..+|..|.|.   .  +  .++|++ -....+.|+..      ..         ..++..+..   -+.+.-.++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            355678889998   2  2  235544 34456666661      11         123334431   133567899999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCcE-----E-EEecCC----------CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004203          160 LNPTIIASGSLDHEVRLWNASTAEC-----I-GSRDFY----------RPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (768)
Q Consensus       160 ~dg~lLaSgS~DgtVrLWDl~sg~~-----i-~~l~h~----------~~V~svafSPDG~~LatgSdd~I~IWDl~t~~  223 (768)
                      .+...||.....|...|||+..+..     . ......          +.-..+.|.++-..|++++..++.++|+++..
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~  235 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW  235 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence            8889999999999999999922111     1 111111          23347889999999999999999999998876


Q ss_pred             cccCCeEeecCCCCeEEEEEccC--CCeEEEEEe
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE  255 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPD--G~~LlaS~s  255 (768)
                      .... .........|..+.-+|+  +..++.|+.
T Consensus       236 ~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiLTs~  268 (765)
T PF10214_consen  236 QTEY-LVTAKTWSWILDVKRSPDNPSHVFILTSK  268 (765)
T ss_pred             ccch-hccCCChhheeeEEecCCccceEEEEecC
Confidence            5221 223335578999999988  444444443

These proteins are found in fungi.

>PRK13684 Ycf48-like protein; Provisional

Probab=90.75  E-value=29  Score=38.48  Aligned_cols=143  Identities=13%  Similarity=0.071  Sum_probs=81.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 004203          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (768)
Q Consensus       107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i  185 (768)
                      ...+.++.+.+++.+++++ ..|.+..-.-..++....+ ..-...++.+.+.+ ++..++.+ ..|.+++=....|+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence            5578999999998766554 4555544211223322222 23345788899999 77766654 4576654334444433


Q ss_pred             EEec-----CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          186 GSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       186 ~~l~-----h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ....     ....+..+.|.+++..++++.++.+. ...+.++.-........-....+.+.|..+++.++++
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G  320 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG  320 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC
Confidence            3222     12357889999998877777666544 3444433211000001223467888888777755544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=90.31  E-value=6.4  Score=45.90  Aligned_cols=105  Identities=11%  Similarity=0.070  Sum_probs=65.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCCC----CC------CeE--EEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLSPP----PR------STI--AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~gH----~~------~Vt--slafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (768)
                      +..++.+..++.|.-.|..++++.-+    ..      .+.  .+... ++..++.++.++.|+-+|.++|+.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            44566677778888888887742211    11      010  11111 2368888889999999999999998777543


Q ss_pred             CCC-----cE-EEEEccCCCCEEEEEe---------CCCeEEEEECCCCcEEEEec
Q 004203          149 RRT-----PW-VVRFHPLNPTIIASGS---------LDHEVRLWNASTAECIGSRD  189 (768)
Q Consensus       149 ~g~-----V~-sVafSP~dg~lLaSgS---------~DgtVrLWDl~sg~~i~~l~  189 (768)
                      ...     +. ...+.  + .+++.++         .++.|+-+|..+|+.+..+.
T Consensus       140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~  192 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY  192 (488)
T ss_pred             CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence            221     11 11222  2 4444543         36789999999999887754

The alignment model contains an 8-bladed beta-propeller.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.03  E-value=0.93  Score=54.77  Aligned_cols=91  Identities=14%  Similarity=0.148  Sum_probs=72.3

Q ss_pred             CCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEE
Q 004203           89 EAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIA  166 (768)
Q Consensus        89 ~DgsIrlWd~~t~~L~--gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLa  166 (768)
                      ..|+|.++--...+-.  ..+-.+++++|+|..-.|++|-.-|.+.+|...+.+.-.....|..+|..+.||+ +|..++
T Consensus        39 r~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~  117 (1416)
T KOG3617|consen   39 RGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLM  117 (1416)
T ss_pred             CCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEE
Confidence            3566766643222111  1222367899999988999999999999999988887777778999999999999 999999


Q ss_pred             EEeCCCeEEEEECC
Q 004203          167 SGSLDHEVRLWNAS  180 (768)
Q Consensus       167 SgS~DgtVrLWDl~  180 (768)
                      ++..-|.|.+|...
T Consensus       118 t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  118 TLDNPGSVHLWRYD  131 (1416)
T ss_pred             EcCCCceeEEEEee
Confidence            99999999999876

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.25  E-value=8.5  Score=46.34  Aligned_cols=104  Identities=13%  Similarity=0.180  Sum_probs=64.9

Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--ecCCCCeEEEEEc--CCCCE-EEEEECCeEEEEEc-----C
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFH--ASGEL-LAVASGHKLYIWRY-----N  220 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~h~~~V~svafS--PDG~~-LatgSdd~I~IWDl-----~  220 (768)
                      .+.-+.-+. -++..+.-+...++.|||.+.+.....  +...+.|..++|.  |||+. |++|-.+.|.+|--     .
T Consensus        31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344444455 444444444445899999999875544  4558899999995  57775 55555777777743     2


Q ss_pred             CCccccCC---eEeecC-CCCeEEEEEccCCCeEEEEEe
Q 004203          221 MREETSSP---RIVLRT-RRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       221 t~~~~~~~---~~l~~h-~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .......+   ..+..+ ..+|.+..|.++|..++.+++
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN  148 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN  148 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence            22111111   112222 468999999999997777766

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.90  E-value=2.4  Score=48.49  Aligned_cols=86  Identities=15%  Similarity=0.240  Sum_probs=62.5

Q ss_pred             CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE-EEEccCCC-----------------CEE
Q 004203          104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV-VRFHPLNP-----------------TII  165 (768)
Q Consensus       104 ~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s-VafSP~dg-----------------~lL  165 (768)
                      ....+.+.++..+|++++.++..+-|.|.++|+.++..++.++|..++=.. +.......                 -++
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            345667899999999999999888899999999999999999987764211 11111011                 134


Q ss_pred             EEEeCCCeEEEEECCCCcEEEEec
Q 004203          166 ASGSLDHEVRLWNASTAECIGSRD  189 (768)
Q Consensus       166 aSgS~DgtVrLWDl~sg~~i~~l~  189 (768)
                      +..-+-|.|-||+++.|..+..+.
T Consensus       384 IyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEeccCCeEEEEecCCCCEEEEEE
Confidence            456778889999998887766553

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=88.88  E-value=1  Score=35.81  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=29.6

Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~  184 (768)
                      ...|..+.|+| ..+++|.+..||.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence            34688999999 9999999999999999999 5543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=88.85  E-value=16  Score=41.73  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=33.1

Q ss_pred             eEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 004203           92 SLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ  137 (768)
Q Consensus        92 sIrlWd~~t~~L---~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~  137 (768)
                      .|++|+.....+   .--.+.|.++.|+.+. .|+.-..||.+++||+.
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            588888765421   1122899999999754 55567799999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=88.79  E-value=1.2  Score=46.71  Aligned_cols=91  Identities=13%  Similarity=0.112  Sum_probs=54.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CC-CCeE
Q 004203          119 GKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FY-RPIA  195 (768)
Q Consensus       119 G~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~-~~V~  195 (768)
                      +..++.|+.+|.|++|+..-. .....+..-...|.++-..-+++.+..++..|+.|+.|++.-++.+.... |. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            457889999999999997632 11111111122343333333355588899999999999999887776654 33 2333


Q ss_pred             EEEEcCCCCEEEEE
Q 004203          196 SIAFHASGELLAVA  209 (768)
Q Consensus       196 svafSPDG~~Latg  209 (768)
                      .......+++|+.+
T Consensus       150 ~~ivv~sd~~i~~a  163 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIA  163 (238)
T ss_pred             eeEEecCCceEEee
Confidence            33333334444443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.68  E-value=26  Score=40.78  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=36.0

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE--EEEE----ec-CCCCcEEEEEccC
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL----HG-HRRTPWVVRFHPL  160 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l----~g-H~g~V~sVafSP~  160 (768)
                      .-..|+|.|||++|++--..|.|++++..++..  +..+    .. -.+....|+++|+
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence            457899999998887766679999998665532  1111    11 2355788999983

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.66  E-value=12  Score=40.74  Aligned_cols=102  Identities=12%  Similarity=0.072  Sum_probs=71.2

Q ss_pred             cEEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---CCCeEEEEEcCCCCEEEEEECC------eEEEEEcCC
Q 004203          152 PWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVASGH------KLYIWRYNM  221 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~sg~~i~~l~h---~~~V~svafSPDG~~LatgSdd------~I~IWDl~t  221 (768)
                      -..++|+|.-..-++.+.+-|+ ..++|....+...++..   ...+--=.|+|||.+|+..-+|      -|-|||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            3457889966777788887774 67899988776655431   1123334699999999877532      299999985


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +-.  ..-.+..|.-....+.|.+||+.++....
T Consensus       150 ~fq--rvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         150 GFQ--RVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ccc--eecccccCCcCcceeEEecCCcEEEEeCC
Confidence            432  22345566777889999999998877654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=88.65  E-value=13  Score=41.40  Aligned_cols=144  Identities=19%  Similarity=0.138  Sum_probs=85.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCC---------CCCCCCCCe-EEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE--EEEecCC
Q 004203           82 RGLASWVEAESLHHLRPKYC---------PLSPPPRST-IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHR  149 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~---------~L~gH~~~V-tslafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~  149 (768)
                      ..+.+.+.||++....+...         .|-.-..++ ..-+++.++..++--+.+|.|+--|+......  ..+.--+
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            34556666666655555421         122222222 23345555566666889999999998765422  2221100


Q ss_pred             ----------CCcEEEEEccCCCCEEEEEe---CCC-------eEEEEECCCCcEEEEecCCCCeEEEEEcCCCC-EEEE
Q 004203          150 ----------RTPWVVRFHPLNPTIIASGS---LDH-------EVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAV  208 (768)
Q Consensus       150 ----------g~V~sVafSP~dg~lLaSgS---~Dg-------tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~-~Lat  208 (768)
                                +.-..+++++ ..+.|+.--   .++       .|.++|+.+++.+..+....++.++..+.|.+ +|+.
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~-~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHA-ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEET-TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred             ccccccCcCCcceeeeeecc-ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence                      1233477877 444333311   111       69999999999999988777888999999887 6655


Q ss_pred             EEC--CeEEEEEcCCCcccc
Q 004203          209 ASG--HKLYIWRYNMREETS  226 (768)
Q Consensus       209 gSd--d~I~IWDl~t~~~~~  226 (768)
                      .+.  +.+.+||..+++...
T Consensus       307 ~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EETTTTEEEEEETTT--EEE
T ss_pred             EcCCCCeEEEEeCcCCcEEe
Confidence            553  449999999987654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=88.40  E-value=26  Score=40.87  Aligned_cols=126  Identities=7%  Similarity=0.050  Sum_probs=73.3

Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEE-----------------EeCCCeEEEEECCCCc
Q 004203          121 TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS-----------------GSLDHEVRLWNASTAE  183 (768)
Q Consensus       121 ~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaS-----------------gS~DgtVrLWDl~sg~  183 (768)
                      .++.++.+|.++..|.++|+.+.......   ..+..+|  +.+++.                 ...++.|.-.|+.+|+
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            67888899999999999999887654211   1123333  222221                 1235789999999999


Q ss_pred             EEEEecCC---------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          184 CIGSRDFY---------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       184 ~i~~l~h~---------~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .+......         .+...-...-.+..|++++ ++.++.+|.++++....  ..........-+.|..+|+.++.+
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~--~~~~~~~~a~P~~~~~~g~~yv~~  455 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK--FRTPSGIQATPMTYEVNGKQYVGV  455 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE--EECCCCceEcCEEEEeCCEEEEEE
Confidence            87776533         1111001112456677766 56699999999987541  111211112223445567655444

The alignment model contains an 8-bladed beta-propeller.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.96  E-value=9.8  Score=47.02  Aligned_cols=109  Identities=14%  Similarity=0.028  Sum_probs=72.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC--------cEEEEEcc---------------CCCCEEEEEeCCCeE
Q 004203          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT--------PWVVRFHP---------------LNPTIIASGSLDHEV  174 (768)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~--------V~sVafSP---------------~dg~lLaSgS~DgtV  174 (768)
                      .+..|+.++.++.|.-.|.+||+.+..+.-....        .+.+.+..               ..+..++.++.|+.|
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            4668888888999999999999988877532211        12233321               033478888899999


Q ss_pred             EEEECCCCcEEEEecCCCCeE-------------EEEEcC--CCCEEEEEE-----------CCeEEEEEcCCCcccc
Q 004203          175 RLWNASTAECIGSRDFYRPIA-------------SIAFHA--SGELLAVAS-----------GHKLYIWRYNMREETS  226 (768)
Q Consensus       175 rLWDl~sg~~i~~l~h~~~V~-------------svafSP--DG~~LatgS-----------dd~I~IWDl~t~~~~~  226 (768)
                      .-.|.++|+....+...+.+.             .+.-.|  .+..+++++           ++.|+-+|+++++...
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            999999999988776544331             111122  133555553           2349999999988644

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=87.93  E-value=3.1  Score=46.30  Aligned_cols=63  Identities=13%  Similarity=0.067  Sum_probs=45.3

Q ss_pred             eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEEEEecCCCC
Q 004203          130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFYRP  193 (768)
Q Consensus       130 tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~sg~~i~~l~h~~~  193 (768)
                      .|.+||+.+++++..+.- ...+.+|..+.++..+|+..+ .++.|.+||..+|+.+++.+.-+.
T Consensus       270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~  333 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE  333 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred             EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence            488889999999988873 235778999995665776654 578999999999999988764443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=87.68  E-value=22  Score=42.07  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=48.5

Q ss_pred             CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEE--EEEcCCCC
Q 004203          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIAS--IAFHASGE  204 (768)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~s--vafSPDG~  204 (768)
                      +.|.-+|+.+|+.+...+......-.. ..- .+.+++.++.||.++.+|.++|+.+..+.....+..  +.|.-+|+
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~  516 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LAT-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGK  516 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEE-CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCE
Confidence            458888999998877665322211111 112 456777788899999999999999988765443332  33344565

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=87.65  E-value=13  Score=42.92  Aligned_cols=148  Identities=14%  Similarity=0.133  Sum_probs=75.0

Q ss_pred             CCeEEEEECCCCCEEEEEeC--------------------CCeEEEEeCCCCeEEEEEecCC--CCcEEEEEccC-CCCE
Q 004203          108 RSTIAAAFSPDGKTLASTHG--------------------DHTVKIIDCQTGSCLKVLHGHR--RTPWVVRFHPL-NPTI  164 (768)
Q Consensus       108 ~~VtslafSPDG~~LaSgS~--------------------DgtVrVWDl~tg~~l~~l~gH~--g~V~sVafSP~-dg~l  164 (768)
                      .--+++-|.|.-+.++|...                    -.++.+||+.+.+.++++.--.  ..+..|+|..+ +..+
T Consensus       181 ~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~  260 (461)
T PF05694_consen  181 PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANY  260 (461)
T ss_dssp             -----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--E
T ss_pred             CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccc
Confidence            34577888888888887643                    4679999999999998886322  23556777541 2333


Q ss_pred             -EEEEeCCCeEEEEEC-CCCcEE----EEec---C---------------CCCeEEEEEcCCCCEEEEEE--CCeEEEEE
Q 004203          165 -IASGSLDHEVRLWNA-STAECI----GSRD---F---------------YRPIASIAFHASGELLAVAS--GHKLYIWR  218 (768)
Q Consensus       165 -LaSgS~DgtVrLWDl-~sg~~i----~~l~---h---------------~~~V~svafSPDG~~LatgS--dd~I~IWD  218 (768)
                       ++.+....+|.+|-- +.++-.    ..+.   .               ..-|+.+..|.|.++|++.+  .|.|+.||
T Consensus       261 gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYD  340 (461)
T PF05694_consen  261 GFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYD  340 (461)
T ss_dssp             EEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred             eEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEe
Confidence             444444556666644 344321    1111   0               24478999999999999998  56699999


Q ss_pred             cCCCccccCCe-Eeec---------------CCCCeEEEEEccCCCeEEEEEe
Q 004203          219 YNMREETSSPR-IVLR---------------TRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       219 l~t~~~~~~~~-~l~~---------------h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +.........- ...+               -.....-|+.|-||+.|.++.+
T Consensus       341 ISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  341 ISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             -SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             cCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            98765322000 0111               1234578999999999988887

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.63  E-value=1.7  Score=53.93  Aligned_cols=100  Identities=12%  Similarity=0.126  Sum_probs=70.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeE-EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCC---
Q 004203          118 DGKTLASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYR---  192 (768)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~~-l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~---  192 (768)
                      .+..++.|+..|.|-..|....-. ...=..-+++|.+++|+- +|.+++.|-.+|.|.+||+..++..+.+. +..   
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            456788899999999998764311 111123457899999999 99999999999999999999988877754 333   


Q ss_pred             CeEEEEEcCCCCEEEEEECCeEEEEEc
Q 004203          193 PIASIAFHASGELLAVASGHKLYIWRY  219 (768)
Q Consensus       193 ~V~svafSPDG~~LatgSdd~I~IWDl  219 (768)
                      .+--+.|..++..+.++..++ .+|.+
T Consensus       177 ~vi~v~~t~~nS~llt~D~~G-sf~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGG-SFWKL  202 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCC-ceEEE
Confidence            344456666777666655433 25544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.35  E-value=3.3  Score=43.27  Aligned_cols=64  Identities=13%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEe---------------cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcc
Q 004203          161 NPTIIASGSLDHEVRLWNASTAECIGSR---------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREE  224 (768)
Q Consensus       161 dg~lLaSgS~DgtVrLWDl~sg~~i~~l---------------~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~  224 (768)
                      .+++++..+.+|.+++||+.+++.+..-               .....|..+..+.+|.-|++-+++..+.||.+.+.-
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~W   99 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGCW   99 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccccee
Confidence            6788999999999999999998764431               133577888889899888888888889998776643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.18  E-value=19  Score=39.58  Aligned_cols=144  Identities=15%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEE
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIG  186 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l-~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-~~i~  186 (768)
                      ....+....++..++ .+..|.|+.=. +.|+.- .....-.+.+..+.-++ ++++++.++.-..+.-||--.. =...
T Consensus       105 s~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~  181 (302)
T PF14870_consen  105 SPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPH  181 (302)
T ss_dssp             -EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEE
T ss_pred             CeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEE
Confidence            334444443443333 44555544432 334432 23345557788888888 8998888776666667775432 1223


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC-CCccccCCeE-eecCCCCeEEEEEccCCCeEEEEEe
Q 004203          187 SRDFYRPIASIAFHASGELLAVASGHKLYIWRYN-MREETSSPRI-VLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       187 ~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~-t~~~~~~~~~-l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .......|..|.|.|++.+.+.+.++.|++=+.. ..+.-.++.. .......+..++|.+++...+++++
T Consensus       182 ~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  182 NRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             E--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             ccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence            3345689999999999988777766668887722 2221111111 1123445899999999886665554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=87.08  E-value=24  Score=39.51  Aligned_cols=99  Identities=10%  Similarity=0.078  Sum_probs=55.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-----CeEEEEEe---c----CCCCcEEEEEccCCCCEEEEEeCC----
Q 004203          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSCLKVLH---G----HRRTPWVVRFHPLNPTIIASGSLD----  171 (768)
Q Consensus       108 ~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-----g~~l~~l~---g----H~g~V~sVafSP~dg~lLaSgS~D----  171 (768)
                      ...++++|.++|  |+++......++.|.+.     ++....+.   .    +......++|.| |+.+.++-+..    
T Consensus        72 ~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~  148 (367)
T TIGR02604        72 SMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASK  148 (367)
T ss_pred             CCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCce
Confidence            346889999988  44444443333435432     12222222   2    123467899999 88877664421    


Q ss_pred             ---------------CeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEE
Q 004203          172 ---------------HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       172 ---------------gtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgS  210 (768)
                                     +.|.-+|..+++.. .+. -......++|+|+|+++++-.
T Consensus       149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       149 VTRPGTSDESRQGLGGGLFRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             eccCCCccCcccccCceEEEEecCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence                           34555666554432 222 223346789999998876544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.77  E-value=21  Score=42.29  Aligned_cols=80  Identities=10%  Similarity=0.076  Sum_probs=45.1

Q ss_pred             CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       172 gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L  250 (768)
                      +.|.-+|+.+|+.........+...-...-.+.+++.++ ++.++.+|.++++.+.. ..+ +....-.-+.|.-+|+..
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~-~~~-g~~~~a~P~ty~~~G~qY  518 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWK-FKT-GSGIVGPPVTYEQDGKQY  518 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEE-EeC-CCCceecCEEEEeCCEEE
Confidence            468888999998877765433321111222445666666 56699999999987541 111 111111224444577765


Q ss_pred             EEE
Q 004203          251 LLT  253 (768)
Q Consensus       251 laS  253 (768)
                      ++.
T Consensus       519 v~~  521 (527)
T TIGR03075       519 VAV  521 (527)
T ss_pred             EEE
Confidence            543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=86.76  E-value=13  Score=43.35  Aligned_cols=136  Identities=12%  Similarity=0.114  Sum_probs=86.4

Q ss_pred             ECCCCCEEEE-EeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCC------CCEEEEEeCCCeEEEEECCC-CcEEE
Q 004203          115 FSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN------PTIIASGSLDHEVRLWNAST-AECIG  186 (768)
Q Consensus       115 fSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~d------g~lLaSgS~DgtVrLWDl~s-g~~i~  186 (768)
                      ...|..+|+. ++.-..++-.|++.|+.+....-|..-  .+.|.|..      ...-+.|-.|..|.-.|-+- |..+.
T Consensus       475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            3345566654 444667888899999999999877664  47888821      11223355566666667664 33333


Q ss_pred             EecCCCCeEEEEEcC----CCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          187 SRDFYRPIASIAFHA----SGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       187 ~l~h~~~V~svafSP----DG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .......++.-.|+.    .+-++++++.++ |++||--....   ...+.+-...|..|..+.+|+++++++.
T Consensus       553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA---KtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA---KTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             eeeehhccccccccccccccCceEEEecCCCceeeehhhcchh---hhcCcccccceeeeEeecCCcEEEEeec
Confidence            333333333333332    345888888655 99999644332   1245566788999999999999999987

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=86.66  E-value=1.7  Score=34.06  Aligned_cols=32  Identities=13%  Similarity=0.207  Sum_probs=27.8

Q ss_pred             CCcEEEEEccCCC--CEEEEEeCCCeEEEEECCC
Q 004203          150 RTPWVVRFHPLNP--TIIASGSLDHEVRLWNAST  181 (768)
Q Consensus       150 g~V~sVafSP~dg--~lLaSgS~DgtVrLWDl~s  181 (768)
                      ++|+++.|+|..+  ++|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998556  7999999899999999995

It contains a characteristic DLL sequence motif.

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=85.28  E-value=95  Score=37.49  Aligned_cols=144  Identities=20%  Similarity=0.207  Sum_probs=81.5

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCC----eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe------CC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDH----TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS------LD  171 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~Dg----tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS------~D  171 (768)
                      ....+...+..+.|+|||+.++..+.++    .+++.+.. +    .+..+...+....|+| +++.++...      .|
T Consensus        54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~~~  127 (620)
T COG1506          54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSP-DGDRIAFLTAEGASKRD  127 (620)
T ss_pred             cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCC-CCCeEEEEecccccccC
Confidence            3455777889999999999999887432    34444544 3    2333445577788898 666555521      12


Q ss_pred             Ce-------EEEEECCCC-cE------------EEEecCCCCeEEEEEcCCCCEEEEEE--CC--e----EEEEEcCCCc
Q 004203          172 HE-------VRLWNASTA-EC------------IGSRDFYRPIASIAFHASGELLAVAS--GH--K----LYIWRYNMRE  223 (768)
Q Consensus       172 gt-------VrLWDl~sg-~~------------i~~l~h~~~V~svafSPDG~~LatgS--dd--~----I~IWDl~t~~  223 (768)
                      +.       +.+|....+ +.            .........+....+++++..++...  ++  .    ..++...++.
T Consensus       128 ~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (620)
T COG1506         128 GGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE  207 (620)
T ss_pred             CceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc
Confidence            22       334433333 11            11112334566677777777666654  21  1    3333331222


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                          ..........+..+.|.++|+.+...+.
T Consensus       208 ----~~~~~~~~~~~~~~~~~~~gk~~~~~~~  235 (620)
T COG1506         208 ----LESLTPGEGSISKLAFDADGKSIALLGT  235 (620)
T ss_pred             ----eEEEcCCCceeeeeeeCCCCCeeEEecc
Confidence                2344455667999999999996665443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.26  E-value=9.7  Score=43.77  Aligned_cols=104  Identities=14%  Similarity=0.170  Sum_probs=77.8

Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--c---CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--D---FYRPIASIAFHASGELLAVASGHKLYIWRYNMR  222 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--~---h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~  222 (768)
                      ..|+|.++.||+ |.+.+|.-..|++|-+++....+.+...  .   ....|....|+.+ .-+|.-++.++-+|.....
T Consensus        65 d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchh
Confidence            456899999999 9999999999999999998544333222  2   2235888999866 6788888888888877665


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..  ....+..++-.|+.-.|.++-+.++.++.
T Consensus       143 kr--slRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  143 KR--SLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hh--hhhhhhhcccCccEEEEccccceEeeecc
Confidence            43  23456678889999999999887665544

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.12  E-value=43  Score=38.29  Aligned_cols=139  Identities=12%  Similarity=0.038  Sum_probs=78.7

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE--EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc---
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---  183 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~---  183 (768)
                      ....+..++||.+++.+..-..++-||-  |..  ...-......+..+.|.+ ++.+++.+ .+|.+ +|....++   
T Consensus       240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l-~~S~d~G~~~~  314 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGL-YVSKGTGLTEE  314 (398)
T ss_pred             ceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceE-EEecCCCCccc
Confidence            3455677788877776654433334442  322  111122345678899988 77776655 55655 44444443   


Q ss_pred             --EEEEecC---CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          184 --CIGSRDF---YRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       184 --~i~~l~h---~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                        .......   ...+..+.|.+++..+++|..+.+.+.. +.++.-........-...++.+.|.++++.++++
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G  388 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG  388 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence              2222222   2358899999999988887777655553 3333211000011224578899998887765554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.07  E-value=16  Score=38.28  Aligned_cols=102  Identities=14%  Similarity=0.132  Sum_probs=67.9

Q ss_pred             CEEEEEeCCCeEEEEeCCC--CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC------eEEEE---ECC--CCcEE-
Q 004203          120 KTLASTHGDHTVKIIDCQT--GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH------EVRLW---NAS--TAECI-  185 (768)
Q Consensus       120 ~~LaSgS~DgtVrVWDl~t--g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg------tVrLW---Dl~--sg~~i-  185 (768)
                      +.|+.+.....|.+|++.+  .+....|.. -+.|..+.++. .|+++++--.+.      .+|+|   +..  ..+++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            4554546677899999983  344556654 37799999999 899999954432      45664   222  11111 


Q ss_pred             -EE---------------------ecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004203          186 -GS---------------------RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (768)
Q Consensus       186 -~~---------------------l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~  223 (768)
                       +.                     +.......+++-.|-..-|++|+++++.+|.+....
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~  166 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT  166 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence             11                     223446678888887777888999999999876554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=84.10  E-value=17  Score=41.39  Aligned_cols=136  Identities=13%  Similarity=0.068  Sum_probs=70.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC--eEEEEECCCCCEEEEEeCCCeEEEEeCCC---C------eEEEEE
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCPLSPPPRS--TIAAAFSPDGKTLASTHGDHTVKIIDCQT---G------SCLKVL  145 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~--VtslafSPDG~~LaSgS~DgtVrVWDl~t---g------~~l~~l  145 (768)
                      .......|+.+...|.|-+|.....+..++...  -....|.+      ....++.-.+-|+..   .      .+...+
T Consensus         9 ~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    9 FAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRR------FSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             EETTTTEEEEEETTS-EEEEEEEE------------------S--------GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             ecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccc------ccccCCCcceEEehhhCCcccccccCchhhe
Confidence            344667777777777777777654433321111  11111111      011122223333322   1      233444


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCCeEEEEEcC-----CC---CEEEE
Q 004203          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHA-----SG---ELLAV  208 (768)
Q Consensus       146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---------h~~~V~svafSP-----DG---~~Lat  208 (768)
                      ....++|.+++.|  |-.+++.|..+|.+.|.|++....+..-.         ....++++.|..     |+   -.|.+
T Consensus        83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            5567899999986  47799999999999999998887766521         233677888863     33   26777


Q ss_pred             EEC-CeEEEEEcC
Q 004203          209 ASG-HKLYIWRYN  220 (768)
Q Consensus       209 gSd-d~I~IWDl~  220 (768)
                      |++ |.+.+|.+.
T Consensus       161 GTn~G~v~~fkIl  173 (395)
T PF08596_consen  161 GTNSGNVLTFKIL  173 (395)
T ss_dssp             EETTSEEEEEEEE
T ss_pred             EeCCCCEEEEEEe
Confidence            775 558888764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=83.67  E-value=21  Score=38.02  Aligned_cols=99  Identities=17%  Similarity=0.183  Sum_probs=68.2

Q ss_pred             EEEEECCCCCEEEEE-eCCCeEEEEe--CCCCeE-----EEEEecC----CCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203          111 IAAAFSPDGKTLAST-HGDHTVKIID--CQTGSC-----LKVLHGH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (768)
Q Consensus       111 tslafSPDG~~LaSg-S~DgtVrVWD--l~tg~~-----l~~l~gH----~g~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (768)
                      ++++|+.|.+.++.- +.+..|.-||  +.+|..     +..++..    .-....++... +|++.++.-.-++|...|
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence            578999988877754 5688997887  677642     2233221    11123355555 788888888888999999


Q ss_pred             CCCCcEEEEecC-CCCeEEEEEcCCC-CEEEEEE
Q 004203          179 ASTAECIGSRDF-YRPIASIAFHASG-ELLAVAS  210 (768)
Q Consensus       179 l~sg~~i~~l~h-~~~V~svafSPDG-~~LatgS  210 (768)
                      ..+|+.+.++.. ...++++||--.+ ..|++.+
T Consensus       240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence            999999888764 5689999996432 3444444

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=81.85  E-value=16  Score=39.72  Aligned_cols=125  Identities=14%  Similarity=0.093  Sum_probs=75.5

Q ss_pred             CeEEEEeCCCC-----CC-----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEec-CCCCcEEEEEc
Q 004203           91 ESLHHLRPKYC-----PL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHG-HRRTPWVVRFH  158 (768)
Q Consensus        91 gsIrlWd~~t~-----~L-----~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~g-H~g~V~sVafS  158 (768)
                      |.|.++++...     ++     ...+++|++++-- +|+ |+.+. ...|++|++...+ ....-.- ..-.+.++.. 
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~-  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV-  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence            67777777662     21     2457789988877 444 44444 3689999998877 4332221 2224555554 


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCC-CcEEEEec---CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCC
Q 004203          159 PLNPTIIASGSLDHEVRLWNAST-AECIGSRD---FYRPIASIAFHASGELLAVASG-HKLYIWRYNM  221 (768)
Q Consensus       159 P~dg~lLaSgS~DgtVrLWDl~s-g~~i~~l~---h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t  221 (768)
                        .+++++.|...+.+.++..+. ...+..+.   ....+.++.|-+|++.++++.. +.+.++.+..
T Consensus       138 --~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  138 --FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             --ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             --cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence              356888998888788775443 22222222   3456888889877776666664 5588888763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=81.46  E-value=29  Score=43.39  Aligned_cols=157  Identities=17%  Similarity=0.207  Sum_probs=99.4

Q ss_pred             EEEEeCCCCC-CCCC-------CCCeEEEEECCC-CCEEEEEeC----------CCeEEEEeCCCCeEEEEEecC--CCC
Q 004203           93 LHHLRPKYCP-LSPP-------PRSTIAAAFSPD-GKTLASTHG----------DHTVKIIDCQTGSCLKVLHGH--RRT  151 (768)
Q Consensus        93 IrlWd~~t~~-L~gH-------~~~VtslafSPD-G~~LaSgS~----------DgtVrVWDl~tg~~l~~l~gH--~g~  151 (768)
                      ++++|..+-+ +..|       -.+|.++.|..| +.++++|..          .|.|.+|.+..++.++.+..+  .+.
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            5666666542 1122       224666679887 677777754          577888887774444444322  355


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCe
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPR  229 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~  229 (768)
                      |.++..-  +++++|.-  ...|+||++.+++.++. -.+..++..+...-.|..+++|. -+.+.+..++..+..-...
T Consensus       832 v~aL~~f--ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev  907 (1096)
T KOG1897|consen  832 VYALVEF--NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV  907 (1096)
T ss_pred             eeehhhh--CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence            6655432  57777654  45799999998855554 45778888899999999999988 4556666665554211111


Q ss_pred             EeecCCCCeEEEEEccCCCeEEEE
Q 004203          230 IVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       230 ~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ...-+..+.+++.+-.+..++.+.
T Consensus       908 ArD~~p~Wmtaveil~~d~ylgae  931 (1096)
T KOG1897|consen  908 ARDYNPNWMTAVEILDDDTYLGAE  931 (1096)
T ss_pred             ehhhCccceeeEEEecCceEEeec
Confidence            222356778888887766655443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=81.23  E-value=30  Score=33.70  Aligned_cols=109  Identities=12%  Similarity=0.087  Sum_probs=68.7

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCC--------eEEEEEecCCCCcEEEEEcc---C-CCCEEEEEeCCCeEEEEECC
Q 004203          113 AAFSPDGKTLASTHGDHTVKIIDCQTG--------SCLKVLHGHRRTPWVVRFHP---L-NPTIIASGSLDHEVRLWNAS  180 (768)
Q Consensus       113 lafSPDG~~LaSgS~DgtVrVWDl~tg--------~~l~~l~gH~g~V~sVafSP---~-dg~lLaSgS~DgtVrLWDl~  180 (768)
                      -.|......|+.++.-++|.|++....        ..+..|. -...|++++-.+   . +.+.|+.|+.. .|..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence            345555556777777788888876432        2233332 345577665433   1 35566666654 68999999


Q ss_pred             CCcEEEEecCCCCeEEEEEcC----CCCEEEEEECCeEEEEEcCCCc
Q 004203          181 TAECIGSRDFYRPIASIAFHA----SGELLAVASGHKLYIWRYNMRE  223 (768)
Q Consensus       181 sg~~i~~l~h~~~V~svafSP----DG~~LatgSdd~I~IWDl~t~~  223 (768)
                      ....+......+.++++.+-.    +..++++|+.-.|+-||....+
T Consensus        82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            877766666678888887743    3456666666667777765544

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.16  E-value=54  Score=41.82  Aligned_cols=123  Identities=14%  Similarity=0.136  Sum_probs=81.5

Q ss_pred             EEEeCCCeEEEEeCCCC---------CCCCC------CCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeE-EEEEec
Q 004203           85 ASWVEAESLHHLRPKYC---------PLSPP------PRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSC-LKVLHG  147 (768)
Q Consensus        85 vSgs~DgsIrlWd~~t~---------~L~gH------~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~-l~~l~g  147 (768)
                      +.-+++..|..+|++.-         .|..|      ..-..++.|+|.- ...+.+..|+.|++.-+..-.. +..+. 
T Consensus       118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-  196 (1405)
T KOG3630|consen  118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-  196 (1405)
T ss_pred             EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-
Confidence            34445567888998632         12222      2345788899843 3456777888888887643221 22222 


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-----cCCCCeEEEEEcCCCCEEEEEE
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----DFYRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-----~h~~~V~svafSPDG~~LatgS  210 (768)
                      -+..+++++|+| .|+.++.|...|++.-|.-. .+....+     .....|.+++|-....+|++-+
T Consensus       197 ~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  197 VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             cccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            345688999999 99999999999998887653 3333332     1356899999998888777654

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=80.43  E-value=1.5e+02  Score=36.14  Aligned_cols=281  Identities=18%  Similarity=0.112  Sum_probs=146.6

Q ss_pred             ceeecCCcceeecCCCCeEEEEEecCCCEEEEEeCCC------eEEEEeCCCCCCCC--CCCCeEEEEECCCCCEEEEEe
Q 004203           55 SKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAE------SLHHLRPKYCPLSP--PPRSTIAAAFSPDGKTLASTH  126 (768)
Q Consensus        55 ~k~~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~Dg------sIrlWd~~t~~L~g--H~~~VtslafSPDG~~LaSgS  126 (768)
                      .+.++|.+..+-..+|..+-.+.-+....++.++.|.      ++++-|+.++.+..  -.....+++|.+|++.|+...
T Consensus       113 eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~  192 (682)
T COG1770         113 EEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTR  192 (682)
T ss_pred             eeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEE
Confidence            4455666655444455555555444455555555443      48888998885443  233478899999999887666


Q ss_pred             CCCe-----EEEEeCCC--CeEEEEEecCCCCcE-EEEEccCCCCEEEEEeCC---CeEEEEECCCCcE--EEEecCCCC
Q 004203          127 GDHT-----VKIIDCQT--GSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSLD---HEVRLWNASTAEC--IGSRDFYRP  193 (768)
Q Consensus       127 ~Dgt-----VrVWDl~t--g~~l~~l~gH~g~V~-sVafSP~dg~lLaSgS~D---gtVrLWDl~sg~~--i~~l~h~~~  193 (768)
                      .|-.     |....+.+  ..-...+........ .+.-+. ..++|+....|   ..+++.|....+.  .....-...
T Consensus       193 ~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~-s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g  271 (682)
T COG1770         193 LDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSR-SEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENG  271 (682)
T ss_pred             EcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeecc-CCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCC
Confidence            5422     33334444  222333333322211 222222 44555544333   3678888776443  222222211


Q ss_pred             e-EEEEEcCCCCEEEE-EE-CCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEe
Q 004203          194 I-ASIAFHASGELLAV-AS-GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLA  269 (768)
Q Consensus       194 V-~svafSPDG~~Lat-gS-dd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~  269 (768)
                      + ..+.  ..+.+++. .. +++ .+|+.............+..|+..++--.|+--..+|+...+...+          
T Consensus       272 ~eY~~e--h~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~gl----------  339 (682)
T COG1770         272 VEYSVE--HGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGL----------  339 (682)
T ss_pred             cEEeee--ecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCC----------
Confidence            1 1111  12443333 33 333 6666544411111234566677777666676666767655442222          


Q ss_pred             ecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce-EEEEecCCCEEEEEecCCCCCcceEEeccCCCceeeeeccc
Q 004203          270 TSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYS  348 (768)
Q Consensus       270 t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil-~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~~~~  348 (768)
                                +.+.+++...+....+.......  ..+ ...--.|..+|.+.-.+-+.+...+..++.+...+.|-.-.
T Consensus       340 ----------p~v~v~~~~~~~~~~i~f~~~ay--~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqqe  407 (682)
T COG1770         340 ----------PRVVVRDRKTGEERGIAFDDEAY--SAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQE  407 (682)
T ss_pred             ----------ceEEEEecCCCceeeEEecchhh--hccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEecc
Confidence                      12222222222211111111111  111 22333456778877788889999999999999888887777


Q ss_pred             CCC-CCcCceecc
Q 004203          349 TPS-GQYELVLSP  360 (768)
Q Consensus       349 ~~t-~~~~~~v~P  360 (768)
                      -+. -+|++|++=
T Consensus       408 V~~g~dp~~Y~s~  420 (682)
T COG1770         408 VPGGFDPEDYVSR  420 (682)
T ss_pred             CCCCCChhHeEEE
Confidence            777 788888874

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=80.36  E-value=32  Score=39.32  Aligned_cols=182  Identities=12%  Similarity=0.032  Sum_probs=92.8

Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC------CC------CCCCCeEEEEECC-----CC---CEEEEEeCCCe
Q 004203           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP------LS------PPPRSTIAAAFSP-----DG---KTLASTHGDHT  130 (768)
Q Consensus        71 ~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~------L~------gH~~~VtslafSP-----DG---~~LaSgS~Dgt  130 (768)
                      +.+......+-+.++.+.++|.+.+.|.+...      +.      .....|+++.|+-     |+   -.|++|.+.|.
T Consensus        87 g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~  166 (395)
T PF08596_consen   87 GPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN  166 (395)
T ss_dssp             -SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred             CcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence            34444444577889999999999999997541      11      2345688898873     33   36889999999


Q ss_pred             EEEEeCC--C-CeE----EEEEecCCCCcEEEE-EccCCC-------------------CEEEEEeCCCeEEEEECCCCc
Q 004203          131 VKIIDCQ--T-GSC----LKVLHGHRRTPWVVR-FHPLNP-------------------TIIASGSLDHEVRLWNASTAE  183 (768)
Q Consensus       131 VrVWDl~--t-g~~----l~~l~gH~g~V~sVa-fSP~dg-------------------~lLaSgS~DgtVrLWDl~sg~  183 (768)
                      +.+|.+.  . +..    ......+.++|..+. |+.+++                   .-++....+..++++...+.+
T Consensus       167 v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k  246 (395)
T PF08596_consen  167 VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSK  246 (395)
T ss_dssp             EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---
T ss_pred             EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCc
Confidence            9999764  2 211    122234556666655 433111                   123444456789999998877


Q ss_pred             EEEEec-CCCCeEEEEEc-----CCCCEEEEEE-CCeEEEEEcCCCccccCCeEee--cCCCCeEEEEEccCCCeEEEE
Q 004203          184 CIGSRD-FYRPIASIAFH-----ASGELLAVAS-GHKLYIWRYNMREETSSPRIVL--RTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       184 ~i~~l~-h~~~V~svafS-----PDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~--~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ...+.. ..-....+.+-     ..+..|++-. ++.|+++.+-.-+.... ..+.  .....+....|+++|..++..
T Consensus       247 ~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~-~~l~~~~d~~~~~~ssis~~Gdi~~~~  324 (395)
T PF08596_consen  247 GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKS-VSLPPPLDSRRLSSSSISRNGDIFYWT  324 (395)
T ss_dssp             EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEE-EE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred             ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhc-ccCCCccccccccccEECCCCCEEEEe
Confidence            765533 22233344553     2444555555 56699999987665431 1111  112234566789999866544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	768
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-11
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-11
2h9l_A	329	Wdr5delta23 Length = 329		3e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-11
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-11
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-10
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		9e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		5e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		9e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-06
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		5e-06
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		6e-06
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		6e-06
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		7e-06
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		7e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-04
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		7e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSL 170
           A  F+ DG  + S+  D   +I D  +G CLK L      P   V+F P N   I + +L
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATL 234
Query: 171 DHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
           D+ ++LW+ S  +C+ +      + Y   A+ +      +++ +  + +YIW    +E
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSL 170
           A  F+ DG  + S+  D   +I D  +G CLK L      P   V+F P N   I + +L
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATL 236
Query: 171 DHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
           D+ ++LW+ S  +C+ +      + Y   A+ +      +++ +  + +YIW    +E
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 205
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 206 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 264
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 265 GGKWIVSGSEDNLVYIWNLQTKE 287

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 193
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 194 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 252
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 253 GGKWIVSGSEDNLVYIWNLQTKE 275

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 87  WVEAESLHHLRPKYCPLSPPPRSTIAA--------AFSPDGKTLASTHGDHTVKIIDCQT 138
           W+ A S   L   +         TI+         A+S D   L S   D T+KI D  +
Sbjct: 40  WLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-PIASI 197
           G CLK L GH    +   F+P    +I SGS D  VR+W+  T +C+ +   +  P++++
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 198 AFHASGELLAVAS 210
            F+  G L+  +S
Sbjct: 159 HFNRDGSLIVSSS 171

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
            A+S D   L S   D T+KI D  +G CLK L GH    +   F+P    +I SGS D 
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 132
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKL-YIWRYNMREETSSPR- 229
            VR+W+  T  C+ +   +  P++++ F+  G L+  +S   L  IW      +T+S + 
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 186
Query: 230 ---IVLRTRRSLRAVHFHPHAAPLLLTAEVNDL 259
              ++      +  V F P+   +L     NDL
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL 219

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 195 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKE 276

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 195 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKE 276

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 189 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKE 270

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 85  ASWVEAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCL 142
            S+ E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CL
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 143 KVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIAS 196
           K L      P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+
Sbjct: 188 KTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 197 IAFHASGELLAVASGHKLYIWRYNMRE 223
            +      +++ +  + +YIW    +E
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKE 273

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 195 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKE 276

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 184
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 185 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 243
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 244 GGKWIVSGSEDNLVYIWNLQTKE 266

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 189 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKE 270

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 85  ASWVEAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCL 142
            S+ E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CL
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 143 KVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIAS 196
           K L      P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+
Sbjct: 188 KTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 197 IAFHASGELLAVASGHKLYIWRYNMRE 223
            +      +++ +  + +YIW    +E
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKE 273

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 187
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 188 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 246
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 247 GGKWIVSGSEDNLVYIWNLQTKE 269

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 189
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 190 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 248
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 249 GGKWIVSGSEDNLVYIWNLQTKE 271

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 192 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
           AFSPDG+T+AS   D TVK+ + + G  L+ L GH  + W V F P + T IAS S D  
Sbjct: 392 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQT-IASASDDKT 449
Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL 232
           V+LWN +             +  +AF   G+ +A AS  K + +W  N +        +L
Sbjct: 450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LL 501
Query: 233 RT----RRSLRAVHFHPHAAPL 250
           +T      S+R V F P    +
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTI 523

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVL-HGHRRTPWVVRFH 158
           P  P  R    A ++P G  LAS  GD  ++I   +  S  C  VL  GH+RT   V + 
Sbjct: 12  PAHPDSRCWFLA-WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 159 PLNPTIIASGSLDHEVRLW--NASTAECIGSRDFYR-PIASIAFHASGELLAVASGHK-L 214
           P     +AS S D    +W  N    EC+ + + +   + S+A+  SG LLA  S  K +
Sbjct: 71  PCG-NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND 258
           ++W  +  +E     ++    + ++ V +HP +  LL +A  +D
Sbjct: 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDD 172

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP-LNPTIIASGSL 170
           + +  P+G  + S   D T+K+ + QTG C+K   GHR   WV    P  + T+IAS S 
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCSN 254
Query: 171 DHEVRLWNASTAEC 184
           D  VR+W  +T EC
Sbjct: 255 DQTVRVWVVATKEC 268

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 84  LASWVEAESLHHLRPKYCPLSPPPRSTI---AAAFSPDGKTLASTHGDHTVKIIDCQTGS 140
           L + +  +S  +  P+    S  P S +   +  FSPDGK LA+   D  ++I D +   
Sbjct: 97  LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 156
Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200
            + +L GH +  + + + P    ++ SGS D  VR+W+  T +C  +      + ++A  
Sbjct: 157 IVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 215
Query: 201 -ASGELLAVAS 210
              G+ +A  S
Sbjct: 216 PGDGKYIAAGS 226

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
           WN+ST +   + +        IA H +G    +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
           WN+ST +   + +        IA H +G    +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
           WN+ST +   + +        IA H +G    +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
           WN+ST +   + +        IA H +G    +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160
           C  +     ++ +        L S + D TVKI D +TG CL+ L G  +    V     
Sbjct: 311 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 161 NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG 203
           N   + + S D  V+LW+  T E      F R + ++    SG
Sbjct: 371 NKNFVITSSDDGTVKLWDLKTGE------FIRNLVTLESGGSG 407

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMR 222
             G RD    + S  +   GE +++    H L +WR N +
Sbjct: 193 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSK 229

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 96  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 156 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 97  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 157 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 96  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 156 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 92  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 152 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 79  DARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT 138
           D  R    W+  +++ +L      + P   +   A FS DG+ +AS   D T+++   +T
Sbjct: 596 DTGRLYLEWINKKTIKNLSR--LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET 653
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASI 197
           G  L  +  H        F   + + IA+ S D +V++W+++T + + + D +   +   
Sbjct: 654 GEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 712
Query: 198 AFHASGELLAVASGHK---LYIWRYNMRE 223
            F      L +A+G     L +W  N +E
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWDLNQKE 741

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 79  DARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT 138
           D  R    W+  +++ +L      + P   +   A FS DG+ +AS   D T+++   +T
Sbjct: 589 DTGRLYLEWINKKTIKNLSR--LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET 646
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASI 197
           G  L  +  H        F   + + IA+ S D +V++W+++T + + + D +   +   
Sbjct: 647 GEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705
Query: 198 AFHASGELLAVASGHK---LYIWRYNMRE 223
            F      L +A+G     L +W  N +E
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKE 734

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
           D K + S  GD T+K+ +  T   ++ L+GH+R    +++      ++ SGS D+ +RLW
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLW 321
Query: 178 NASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIW 217
           +     C+   + +  +       +  +++ A   K+ +W
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 361

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD 189
           V++ D ++GSC  +L GHR+    V + P    I+A+ S D  V+LW+   A  C+ + D
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227
Query: 190 FYR----------------PIASIAFHASG-ELLAVASGHKLYIWRYNMREET 225
            +                  +  + F + G  LL V + +++ +W  +  E T
Sbjct: 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
           ++PDG+ LAS   D+ V +     G      L+    H+     V + P    ++A+G  
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
           + D  +R+WN  +  C+ + D +  + SI +  S     + SGH     +L IW+Y
Sbjct: 309 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 362

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
           ++PDG+ LAS   D+ V +     G      L+    H+     V + P    ++A+G  
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
           + D  +R+WN  +  C+ + D +  + SI +  S     + SGH     +L IW+Y
Sbjct: 298 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 351

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
           FS  G+ L + + D+T+ + D   GS + +L GH      +R  P + T   SGS DH +
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTL 350
Query: 175 RLW 177
           R+W
Sbjct: 351 RVW 353

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 17/151 (11%)
Query: 57  RLLGETARKCSGSFS----QIFEAGRDARRGLASW-VEAESLHHL-RPKYCPLSPPPRST 110
           + LG T    S +FS    QI   GRD    L  W V+ E +H L R  +       R  
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRD--NALRVWNVKGECMHTLSRGAHTDWVSCVR-- 159
Query: 111 IAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
               FSP  D   + S   D+ VK+ D  TG  +  L GH      V   P + ++ AS 
Sbjct: 160 ----FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASS 214
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAF 199
             D   RLW+ +  E +       PI  I F
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQICF 245

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
           ++PDG+ LAS   D+ V +     G      L+    H+     V + P    ++A+G  
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
           + D  +R+WN  +  C+ + D +  + SI +  S     + SGH     +L IW+Y
Sbjct: 218 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 271

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
           A A SPD K   S   D  + + D    + ++   GH      +     + T + +G LD
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLD 204
Query: 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVA 209
           + VR W+      +   DF   I S+ +  +GE LAV 
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	768
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.94
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.93
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.92
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.92
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.92
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.92
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.92
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.91
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.91
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.91
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.9
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.9
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.9
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.9
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.9
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.89
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.89
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.89
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.89
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.89
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.89
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.88
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.88
2pm7_B	297	Protein transport protein SEC13, protein transport	99.88
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.88
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.88
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.88
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.88
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.87
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.87
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.87
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.87
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.87
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.87
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.87
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.87
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.87
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.86
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.86
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.86
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.86
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.86
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.86
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.86
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.86
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.86
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.86
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.86
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.85
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.85
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.85
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.85
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.85
3jro_A	753	Fusion protein of protein transport protein SEC13	99.85
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.84
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.84
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.84
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.84
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.84
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.84
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.84
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.83
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.83
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.83
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.83
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.83
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.83
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.82
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.82
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.82
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.82
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.81
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.81
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.81
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.81
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.81
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.81
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.8
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.8
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.8
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.8
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.79
3jro_A	753	Fusion protein of protein transport protein SEC13	99.79
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.79
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.78
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.78
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.78
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.78
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.78
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.77
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.75
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.74
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.73
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.73
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.73
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.71
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.7
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.69
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.69
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.68
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.67
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.65
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.65
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.64
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.64
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.63
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.63
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.62
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.62
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.61
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.61
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.59
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.59
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.58
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.57
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.55
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.55
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.54
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.53
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.53
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.53
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.51
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.5
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.49
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.46
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.44
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.43
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.43
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.4
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.4
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.38
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.37
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.34
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.32
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.27
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.25
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.23
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.21
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.19
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.17
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.16
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.14
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.11
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.11
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.07
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.06
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.06
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.04
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.03
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.03
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.01
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.0
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.97
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.95
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.92
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.9
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.86
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.86
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.84
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.82
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.82
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.8
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.74
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.74
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.66
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.61
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.5
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.48
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.45
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.4
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.38
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.37
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.21
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.21
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.2
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.19
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.18
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.14
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.14
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.1
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.08
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.05
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.98
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.97
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.96
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.91
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.87
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.84
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.74
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.7
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.64
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.63
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.62
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.54
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.52
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.49
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.47
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.45
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.45
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.41
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.38
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.3
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.28
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.27
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.15
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.15
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.15
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.1
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.08
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.01
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.0
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.98
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.96
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.91
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.87
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.82
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.82
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.77
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.74
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.73
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.61
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.45
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.44
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.41
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.39
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.34
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.32
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.27
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.25
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.17
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.12
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.1
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.08
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.03
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.03
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.02
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.98
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.9
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.89
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.76
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.71
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.68
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.59
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.51
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.46
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.44
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.43
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.3
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.29
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.05
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.97
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.72
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.6
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.22
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.5
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.31
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.48
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	92.15
3ott_A	758	Two-component system sensor histidine kinase; beta	91.92
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.08
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.07
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	90.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.98
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.76
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.38
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	89.58
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.18
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	88.44
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	87.45
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	87.06
3ott_A	758	Two-component system sensor histidine kinase; beta	84.42
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	83.63
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	82.96
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	82.79
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	82.27
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.07
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	81.8
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	81.43
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	81.16

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.95  E-value=2.1e-25  Score=257.52  Aligned_cols=243  Identities=14%  Similarity=0.143  Sum_probs=185.7

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEeCCCCeEE
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCL  142 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~D----gtVrVWDl~tg~~l  142 (768)
                      ...+...++..|++++.|+.|++||..++      .+.+|.+.|.+++|+|||++|++++.+    +.|++||  +++..
T Consensus        63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~  140 (611)
T 1nr0_A           63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSN  140 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBC
T ss_pred             EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCc
Confidence            34555678999999999999999998643      356899999999999999999999875    4788887  56677


Q ss_pred             EEEecCCCCcEEEEEccCCCC-EEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEc
Q 004203          143 KVLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (768)
Q Consensus       143 ~~l~gH~g~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl  219 (768)
                      ..+.+|.+.|++++|+| ++. .|++++.|++|++||..++++...+ +|...|.+++|+|||++|++++.|+ |++||+
T Consensus       141 ~~l~gh~~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             BCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ceecCCCCCceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence            78899999999999999 554 7999999999999999998888776 4889999999999999999999655 999999


Q ss_pred             CCCccccCCeEe-------ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc-----------
Q 004203          220 NMREETSSPRIV-------LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR-----------  276 (768)
Q Consensus       220 ~t~~~~~~~~~l-------~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~-----------  276 (768)
                      .+++...   .+       .+|...|.+++|+|||++|++++.     +|++..++....+.....+..           
T Consensus       220 ~~g~~~~---~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (611)
T 1nr0_A          220 VDGTKTG---VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA  296 (611)
T ss_dssp             TTCCEEE---ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             CCCcEee---eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence            8876533   22       168999999999999998887664     788876554443322111100           


Q ss_pred             ----CCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          277 ----YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       277 ----~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                          .....+.+|+...+.   ......+...++...+|+|||++|+....|
T Consensus       297 l~s~s~d~~i~~~~~~~~~---~~~~~~gh~~~v~~l~~spdg~~l~s~s~D  345 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGS---IDQVRYGHNKAITALSSSADGKTLFSADAE  345 (611)
T ss_dssp             EEEEETTCCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEeCCCcEEEEeCCCCC---cceEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence                012334555543322   122223455677889999999999876443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=1.7e-25  Score=241.49  Aligned_cols=172  Identities=15%  Similarity=0.168  Sum_probs=148.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~--------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      ....|++++.|+.|++||+.+++        +.+|.+.|++++|+|||++|++|+.|++|++||+++++++..+.+|.+.
T Consensus        92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~  171 (344)
T 4gqb_B           92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ  171 (344)
T ss_dssp             TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence            34689999999999999998763        3489999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCeEEEEEcCC-CCEEEEEECC-eEEEEEcCCCcccc
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHAS-GELLAVASGH-KLYIWRYNMREETS  226 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---h~~~V~svafSPD-G~~LatgSdd-~I~IWDl~t~~~~~  226 (768)
                      |++++|+|++..+|++++.|++|+|||++++++...+.   +...+.+++|+|+ +++|++++.+ .|++||+++++...
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~  251 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL  251 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence            99999999555789999999999999999999887753   4557899999995 5688888855 59999999887543


Q ss_pred             CCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                         .+.+|...|++++|+|+|..+++++
T Consensus       252 ---~~~~h~~~v~~v~fsp~g~~~lasg  276 (344)
T 4gqb_B          252 ---SSAVHSQCVTGLVFSPHSVPFLASL  276 (344)
T ss_dssp             ---EEECCSSCEEEEEECSSSSCCEEEE
T ss_pred             ---EEcCCCCCEEEEEEccCCCeEEEEE
Confidence               6788999999999999996555444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=2.5e-25  Score=241.13  Aligned_cols=210  Identities=16%  Similarity=0.208  Sum_probs=177.9

Q ss_pred             CCCCCcceecccccccccCCCccccceeecCCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--------
Q 004203           30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC--------  101 (768)
Q Consensus        30 ~rssk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~--------  101 (768)
                      +|.+|||++|+...+++.++.+.++....|+...+.+++++.          ..+++++.|+.|++|++...        
T Consensus         6 ~~~sk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~i~v~~~~~~~~~~~~~~   75 (402)
T 2aq5_A            6 VRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFM----------ALICEASGGGAFLVLPLGKTGRVDKNVP   75 (402)
T ss_dssp             --CCTTTTCEEEECCGGGSEESCCBCCCCCSSCSEEECSSEE----------EEEBCCSSSCCEEEEETTCCEECCTTCC
T ss_pred             cCCCCCccccCcCCChhhcEecceeecCccCCCcEEECCCeE----------EEEEEEcCCCEEEEEECccCCCCCCCCc
Confidence            689999999999999999999999988888888766653331          12334677899999998542        


Q ss_pred             CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------eEEEEEecCCCCcEEEEEccCCC-CEEEEEeCCC
Q 004203          102 PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNP-TIIASGSLDH  172 (768)
Q Consensus       102 ~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~g~V~sVafSP~dg-~lLaSgS~Dg  172 (768)
                      .+.+|...|++++|+| ++++|++++.|++|++||+.++       +.+..+.+|...|.+++|+| ++ ++|++++.|+
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg  154 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDN  154 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTS
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCC
Confidence            4678999999999999 9999999999999999999988       66889999999999999999 65 7999999999


Q ss_pred             eEEEEECCCCcEEEEe---cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEe-ecCCCC-eEEEEEccC
Q 004203          173 EVRLWNASTAECIGSR---DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIV-LRTRRS-LRAVHFHPH  246 (768)
Q Consensus       173 tVrLWDl~sg~~i~~l---~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l-~~h~~~-V~sVaFSPD  246 (768)
                      +|++||+++++.+..+   .|...|.+++|+|++++|++++.+ .|++||+++++...   .+ ..|... +..+.|+|+
T Consensus       155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~  231 (402)
T 2aq5_A          155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA---EKDRPHEGTRPVHAVFVSE  231 (402)
T ss_dssp             CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECSSCSSSCCEEEECST
T ss_pred             EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee---eeccCCCCCcceEEEEcCC
Confidence            9999999999998887   388899999999999999999955 59999999887543   34 456554 899999999


Q ss_pred             CCeEEEE
Q 004203          247 AAPLLLT  253 (768)
Q Consensus       247 G~~LlaS  253 (768)
                      +++++++
T Consensus       232 ~~~l~~g  238 (402)
T 2aq5_A          232 GKILTTG  238 (402)
T ss_dssp             TEEEEEE
T ss_pred             CcEEEEe
Confidence            9866665

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.94  E-value=4.8e-25  Score=241.98  Aligned_cols=244  Identities=18%  Similarity=0.239  Sum_probs=198.6

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC
Q 004203           74 FEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (768)
                      .......+..|++++.|+.|++||..++    .+.+|.+.|.+++|+|++++|++|+.|++|++||+++++++..+.+|.
T Consensus       113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~  192 (410)
T 1vyh_C          113 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD  192 (410)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC
Confidence            3445567889999999999999999876    467999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~  227 (768)
                      ..|.+++|+| ++++|++++.|++|++||+++++++..+ .|...|.+++|+|++++|++++.++ |++||+++.+... 
T Consensus       193 ~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~-  270 (410)
T 1vyh_C          193 HNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA-  270 (410)
T ss_dssp             SCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred             CCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee-
Confidence            9999999999 9999999999999999999999988876 5888999999999999999999654 9999998887543 


Q ss_pred             CeEeecCCCCeEEEEEccC--------------------CCeEEEEEe-----eCCcCCCCcceeEeecCCccc---C--
Q 004203          228 PRIVLRTRRSLRAVHFHPH--------------------AAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y--  277 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPD--------------------G~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~---~--  277 (768)
                        .+..|...|.+++|+|+                    |.++++++.     +||++.+.....+..+.+...   +  
T Consensus       271 --~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~  348 (410)
T 1vyh_C          271 --ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS  348 (410)
T ss_dssp             --EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             --EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC
Confidence              56789999999999997                    555666554     788876655444443332211   0  


Q ss_pred             ---------CCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          278 ---------PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       278 ---------p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                               ....+.+|+...........   ....++...+|+|++..|+....|
T Consensus       349 ~g~~l~s~s~D~~i~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sgs~D  401 (410)
T 1vyh_C          349 GGKFILSCADDKTLRVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVD  401 (410)
T ss_dssp             SSSCEEEEETTTEEEEECCTTSCCCEEEE---CCSSCEEEEEECSSSSCEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEc---CCCCcEEEEEEcCCCCEEEEEeCC
Confidence                     23557888876655444332   344567789999999998875443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.94  E-value=3.7e-25  Score=235.31  Aligned_cols=238  Identities=13%  Similarity=0.163  Sum_probs=191.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ++..|++++.|++|++|+....      .+.+|...|.+++|++++.++++++.|++|++||+++++.+..+..|...+.
T Consensus        47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~  126 (321)
T 3ow8_A           47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW  126 (321)
T ss_dssp             --CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE
Confidence            4678999999999999998754      3789999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEe
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV  231 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l  231 (768)
                      +++|+| ++++|++++.|+.|++||+++++....+. +...+.+++|+|+|++|++++.++ |++||+++++...   .+
T Consensus       127 ~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~---~~  202 (321)
T 3ow8_A          127 TLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH---TL  202 (321)
T ss_dssp             CEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EE
T ss_pred             EEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EE
Confidence            999999 99999999999999999999998877754 677899999999999999999554 9999999887543   56


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc---C-----------CCCeEEEecCCCCCC
Q 004203          232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y-----------PPPVICMAGAHSSSH  292 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~---~-----------p~~~V~l~d~~s~d~  292 (768)
                      .+|...|++++|+|++++|++++.     +|+++.+.....+..+.+...   +           ....+.+|+..++..
T Consensus       203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~  282 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC  282 (321)
T ss_dssp             CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE
Confidence            778999999999999998777654     778776544433332222110   1           124567777655443


Q ss_pred             CCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          293 PGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       293 ~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                      ....   .....+++..+|++|+++|+....|
T Consensus       283 ~~~~---~~h~~~v~~v~~s~~g~~l~s~~~d  311 (321)
T 3ow8_A          283 VHTF---FDHQDQVWGVKYNGNGSKIVSVGDD  311 (321)
T ss_dssp             EEEE---CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEE---cCCCCcEEEEEECCCCCEEEEEeCC
Confidence            3322   2345577889999999999875443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=6.1e-24  Score=221.53  Aligned_cols=240  Identities=20%  Similarity=0.289  Sum_probs=192.4

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      ....++..|++++.|+.|++|+...+    .+.+|...|.+++|+|++++|++++.|+.|++||+++++++..+.+|...
T Consensus        30 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  109 (312)
T 4ery_A           30 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY  109 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC
Confidence            34467889999999999999999876    46799999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCe
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPR  229 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~  229 (768)
                      |.++.|+| ++++|++++.|++|++||+++++++..+. |...|.+++|+|++++|++++.+ .|++||+++++...  .
T Consensus       110 v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~--~  186 (312)
T 4ery_A          110 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK--T  186 (312)
T ss_dssp             EEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--E
T ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee--E
Confidence            99999999 99999999999999999999999887764 77899999999999999999955 49999998876533  1


Q ss_pred             EeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcc-----------------cCCCCeEEEecC
Q 004203          230 IVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW-----------------RYPPPVICMAGA  287 (768)
Q Consensus       230 ~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~-----------------~~p~~~V~l~d~  287 (768)
                      ....+...+..++|+|+++++++++.     +|+++.++....+.......                 ......+.+|+.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~  266 (312)
T 4ery_A          187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL  266 (312)
T ss_dssp             ECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred             EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence            23345678999999999998888764     77877654333332221110                 012345777776


Q ss_pred             CCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203          288 HSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (768)
Q Consensus       288 ~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~  321 (768)
                      ......   ....+...+++..+|+|++..++..
T Consensus       267 ~~~~~~---~~~~~h~~~v~~~~~~p~~~~l~s~  297 (312)
T 4ery_A          267 QTKEIV---QKLQGHTDVVISTACHPTENIIASA  297 (312)
T ss_dssp             TTCCEE---EEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             CCchhh---hhhhccCCcEEEEeecCcCCceEEE
Confidence            654432   2233445567789999999988865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=1.6e-24  Score=229.33  Aligned_cols=185  Identities=15%  Similarity=0.205  Sum_probs=159.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           80 ARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~---------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      +...|++++.|++|++|+....         .+.+|...|.+++|+|||++|++++.|++|++||+++++.+..+.+|..
T Consensus        29 ~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~  108 (319)
T 3frx_A           29 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS  108 (319)
T ss_dssp             CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC
Confidence            4578999999999999997632         4679999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCC------CCEEEEEECCe-EEEEEcCCCc
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHAS------GELLAVASGHK-LYIWRYNMRE  223 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPD------G~~LatgSdd~-I~IWDl~t~~  223 (768)
                      .|.+++|+| ++.+|++++.|++|++||++.........|...|.+++|+|+      +..|++++.++ |++||+++.+
T Consensus       109 ~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  187 (319)
T 3frx_A          109 DVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ  187 (319)
T ss_dssp             CEEEEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence            999999999 999999999999999999986554455678999999999995      44888888655 9999998876


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L  268 (768)
                      ...   .+.+|...|.+++|+|+|++|++++.     +|++..++....+
T Consensus       188 ~~~---~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~  234 (319)
T 3frx_A          188 IEA---DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL  234 (319)
T ss_dssp             EEE---EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             hhe---eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            533   56789999999999999998887765     7888765444443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=3.1e-24  Score=225.15  Aligned_cols=237  Identities=11%  Similarity=0.119  Sum_probs=183.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      .+...++..|++++.|+.|++||..++    .+..|...|.+++|+|++++|++++.|++|++||+++++++..+.+|.+
T Consensus        19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~   98 (304)
T 2ynn_A           19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD   98 (304)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC
Confidence            344567889999999999999999876    4678999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE-EEe-cCCCCeEEEEEcC-CCCEEEEEECC-eEEEEEcCCCcccc
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-GSR-DFYRPIASIAFHA-SGELLAVASGH-KLYIWRYNMREETS  226 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i-~~l-~h~~~V~svafSP-DG~~LatgSdd-~I~IWDl~t~~~~~  226 (768)
                      .|.+++|+| ++.+|++++.|++|++||++++... ..+ .|...|.+++|+| ++.+|++++.| .|++||+++.....
T Consensus        99 ~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~  177 (304)
T 2ynn_A           99 YIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF  177 (304)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE
T ss_pred             cEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence            999999999 9999999999999999999987443 444 5889999999999 67899999955 59999998765422


Q ss_pred             CCeEeecCCCCeEEEEEcc--CCCeEEEEEe-----eCCcCCCCcceeEeecCCccc---C-----------CCCeEEEe
Q 004203          227 SPRIVLRTRRSLRAVHFHP--HAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y-----------PPPVICMA  285 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSP--DG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~---~-----------p~~~V~l~  285 (768)
                        .....+...+..+.|+|  +++++++++.     +||++.+.....+..+.+...   +           ....+.+|
T Consensus       178 --~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iW  255 (304)
T 2ynn_A          178 --TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW  255 (304)
T ss_dssp             --EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             --eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEE
Confidence              23345668899999987  6677776654     888876654444433322211   0           12456677


Q ss_pred             cCCCCCCCCcccccCCCCCCceEEEEecCCCE
Q 004203          286 GAHSSSHPGLAEEVPLITPPFLRPSFVRDDER  317 (768)
Q Consensus       286 d~~s~d~~~L~~~~~~~slpil~psFSpDG~r  317 (768)
                      +..+.......   ......++..+|+|+++.
T Consensus       256 d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  284 (304)
T 2ynn_A          256 NSSTYKVEKTL---NVGLERSWCIATHPTGRK  284 (304)
T ss_dssp             ETTTCCEEEEE---CCSSSSEEEEEECTTCGG
T ss_pred             ECCCCceeeec---cCCCccEEEEEECCCCCc
Confidence            75554332222   223345677888888764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=1e-23  Score=224.60  Aligned_cols=240  Identities=14%  Similarity=0.144  Sum_probs=181.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (768)
                      ++..|++++.|++|++||....           .+.+|...|.+++|+|++.+|++++.|++|++||+++++.+..+.+|
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h  117 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH  117 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            6789999999999999998642           36799999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCeEEEEEcCCC----------CEEEEEECC-eE
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DFYRPIASIAFHASG----------ELLAVASGH-KL  214 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l---~h~~~V~svafSPDG----------~~LatgSdd-~I  214 (768)
                      ...|.+++|+| ++++|++++.|++|++||+.........   .|...|.+++|+|++          .+|++++.+ .|
T Consensus       118 ~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  196 (343)
T 2xzm_R          118 QSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL  196 (343)
T ss_dssp             CSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred             CCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence            99999999999 9999999999999999999854333333   477899999999987          689999854 59


Q ss_pred             EEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcc---cC---------
Q 004203          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW---RY---------  277 (768)
Q Consensus       215 ~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~---~~---------  277 (768)
                      ++||... ..   ...+..|...|.+++|+|+|++|++++.     +|++................   .+         
T Consensus       197 ~iwd~~~-~~---~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~  272 (343)
T 2xzm_R          197 KVWNTNF-QI---RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV  272 (343)
T ss_dssp             EEEETTT-EE---EEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEE
T ss_pred             EEEcCCC-ce---eEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEE
Confidence            9999432 22   2356779999999999999998888765     78874332221111110000   00         


Q ss_pred             -CCCeEEEecCCCCCCCCccccc----------CCCCCCceEEEEecCCCEEEEEecC
Q 004203          278 -PPPVICMAGAHSSSHPGLAEEV----------PLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       278 -p~~~V~l~d~~s~d~~~L~~~~----------~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                       ....+.+|+........+....          .+....+...+|+|||+.|+....|
T Consensus       273 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D  330 (343)
T 2xzm_R          273 GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD  330 (343)
T ss_dssp             EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT
T ss_pred             ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC
Confidence             1234666766554433211111          1233456789999999999986443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=6.6e-23  Score=252.83  Aligned_cols=249  Identities=17%  Similarity=0.222  Sum_probs=187.8

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (768)
                      ...+...++..+++++.|+.|++||..++    .+.+|...|.+++|+|||++|++++.|++|++||+.+++.+..+.+|
T Consensus       619 ~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  698 (1249)
T 3sfz_A          619 YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH  698 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence            34455678899999999999999999887    47899999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccC-CCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccc
Q 004203          149 RRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREET  225 (768)
Q Consensus       149 ~g~V~sVafSP~-dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~  225 (768)
                      ...|.+++|+|+ ++.++++++.|+.|++||++++++...+ .|...|.+++|+|++++|++++.+ .|++||+.++...
T Consensus       699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~  778 (1249)
T 3sfz_A          699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER  778 (1249)
T ss_dssp             SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEE
T ss_pred             CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCccc
Confidence            999999999994 3458999999999999999999988775 588999999999999999999955 5999999887543


Q ss_pred             cCCe----------EeecCCCCeEEEEEccCCCeEEEEEe----eCCcCCCCcceeEee-cCCcc--------------c
Q 004203          226 SSPR----------IVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSESSLTLAT-SPGYW--------------R  276 (768)
Q Consensus       226 ~~~~----------~l~~h~~~V~sVaFSPDG~~LlaS~s----vwdl~sg~~~~~L~t-~~G~~--------------~  276 (768)
                      ....          ........+.+++|+|+|+.+++++.    +|++..+.....+.. ..+..              .
T Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  858 (1249)
T 3sfz_A          779 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA  858 (1249)
T ss_dssp             EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEE
T ss_pred             ceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEE
Confidence            2100          00112346788888999887777654    666655443333221 11110              0


Q ss_pred             CCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          277 YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       277 ~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                      .....+.+|+..++...   ....+...++....|+|||+.++....+
T Consensus       859 ~~dg~v~vwd~~~~~~~---~~~~~h~~~v~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          859 LSQYCVELWNIDSRLKV---ADCRGHLSWVHGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             CSSSCEEEEETTTTEEE---EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eCCCeEEEEEcCCCcee---eecCCCccceEEEEECCCCCEEEEEeCC
Confidence            12245667775544322   2223445567788899999888876544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.93  E-value=1.7e-23  Score=222.97  Aligned_cols=239  Identities=15%  Similarity=0.153  Sum_probs=189.1

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----eEEEEEec
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG----SCLKVLHG  147 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg----~~l~~l~g  147 (768)
                      ....++..|++++.|+.|++||..+.    .+..|...|.+++|+|+|++|++++.|+.|++||+.++    +....+.+
T Consensus        62 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~  141 (340)
T 1got_B           62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG  141 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecC
Confidence            34467889999999999999998876    35689999999999999999999999999999999875    35677889


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccc
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREET  225 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~  225 (768)
                      |.+.|.++.|++ ++ .+++++.|++|++||+++++++..+. |...|.+++|+|++++|++++.+ .|++||++++...
T Consensus       142 h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~  219 (340)
T 1got_B          142 HTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR  219 (340)
T ss_dssp             CSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred             CCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE
Confidence            999999999998 55 48899999999999999999888764 88899999999999999999955 5999999988654


Q ss_pred             cCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcc------c-----------CCCCeEE
Q 004203          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW------R-----------YPPPVIC  283 (768)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~------~-----------~p~~~V~  283 (768)
                      .   .+..|...|.+++|+|+++++++++.     +||++.......+. ..++.      .           .....+.
T Consensus       220 ~---~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~  295 (340)
T 1got_B          220 Q---TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCN  295 (340)
T ss_dssp             E---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             E---EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-cCCcccceEEEEECCCCCEEEEECCCCeEE
Confidence            3   56779999999999999998887765     77777543322221 11110      0           1224567


Q ss_pred             EecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          284 MAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       284 l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                      +|+.........   ..+...++...+|+|||..|+....
T Consensus       296 vwd~~~~~~~~~---~~~h~~~v~~~~~s~dg~~l~s~s~  332 (340)
T 1got_B          296 VWDALKADRAGV---LAGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             EEETTTCCEEEE---EECCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEEcccCcEeeE---eecCCCcEEEEEEcCCCCEEEEEcC
Confidence            777655443322   2345567788999999999987543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=1.5e-23  Score=224.26  Aligned_cols=179  Identities=22%  Similarity=0.256  Sum_probs=154.4

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eEEEEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVL  145 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~-------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l  145 (768)
                      .+...++..|++++.|+.|++||.....       ..+|...|.+++|+|||++|++++.|++|++||+.++  +++..+
T Consensus        22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~  101 (345)
T 3fm0_A           22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL  101 (345)
T ss_dssp             EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc
Confidence            4455678899999999999999987652       3689999999999999999999999999999999876  457889


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---EEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcC
Q 004203          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYN  220 (768)
Q Consensus       146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~  220 (768)
                      .+|.+.|.+++|+| ++++|++++.|++|++||+++++.   +..+ .|...|.+++|+|++++|++++.++ |++||++
T Consensus       102 ~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~  180 (345)
T 3fm0_A          102 EGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE  180 (345)
T ss_dssp             CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE
T ss_pred             cCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec
Confidence            99999999999999 999999999999999999987643   3333 5888999999999999999999655 9999998


Q ss_pred             CCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..+... ...+.+|...|++++|+|+|++|++++.
T Consensus       181 ~~~~~~-~~~~~~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          181 EDDWVC-CATLEGHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             TTEEEE-EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEE-EEEecCCCCceEEEEECCCCCEEEEEeC
Confidence            765322 2356789999999999999998887765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=3e-23  Score=216.92  Aligned_cols=223  Identities=14%  Similarity=0.152  Sum_probs=168.3

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCe--EEEEE
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGS--CLKVL  145 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg~--~l~~l  145 (768)
                      +...++..|++++.|+.|++|+....      ++.+|.+.|.+++|++  ++++|++++.|++|++||+++++  .+..+
T Consensus        16 ~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~   95 (297)
T 2pm7_B           16 VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH   95 (297)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe
Confidence            34467889999999999999998642      4789999999999987  48999999999999999999874  56778


Q ss_pred             ecCCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCcE---EEEecCCCCeEEEEEcCC-------------CCEEE
Q 004203          146 HGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHAS-------------GELLA  207 (768)
Q Consensus       146 ~gH~g~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~sg~~---i~~l~h~~~V~svafSPD-------------G~~La  207 (768)
                      .+|...|.+++|+| +  +.+|++++.|++|++||++++..   .....|...|.+++|+|+             +++|+
T Consensus        96 ~~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~  174 (297)
T 2pm7_B           96 AVHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV  174 (297)
T ss_dssp             CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEE
T ss_pred             ecCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEE
Confidence            89999999999999 5  78999999999999999987632   233468889999999997             57899


Q ss_pred             EEECC-eEEEEEcCCCcccc-CCeEeecCCCCeEEEEEccCC---CeEEEEEe-----eCCcCCCCcceeEeecCCcccC
Q 004203          208 VASGH-KLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHA---APLLLTAE-----VNDLDSSESSLTLATSPGYWRY  277 (768)
Q Consensus       208 tgSdd-~I~IWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPDG---~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~  277 (768)
                      +++.| .|++||+++..... ....+.+|...|++++|+|++   ++|++++.     +|+++........         
T Consensus       175 sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~---------  245 (297)
T 2pm7_B          175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKK---------  245 (297)
T ss_dssp             EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE---------
T ss_pred             EEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccce---------
Confidence            99955 59999998765221 122466799999999999996   55555443     3443321100000         


Q ss_pred             CCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCC
Q 004203          278 PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH  325 (768)
Q Consensus       278 p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~  325 (768)
                           .           +. ........++..+|+|||+.|+....|.
T Consensus       246 -----~-----------~~-~~~~~~~~v~~~~~s~~g~~las~~~D~  276 (297)
T 2pm7_B          246 -----T-----------LL-KEEKFPDVLWRASWSLSGNVLALSGGDN  276 (297)
T ss_dssp             -----E-----------ES-SSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred             -----e-----------ee-ecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence                 0           00 0011234567899999999998865543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.93  E-value=1.4e-23  Score=220.24  Aligned_cols=190  Identities=17%  Similarity=0.243  Sum_probs=162.2

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCC
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRR  150 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~g  150 (768)
                      ....++..|++++.|+.|++||..++    .+.+|...|.+++|+|++++|++++.|++|++||++++ .....+.+|..
T Consensus        62 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~  141 (304)
T 2ynn_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (304)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred             EEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence            34457789999999999999999877    46799999999999999999999999999999999887 55678899999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCeEEEEEcC--CCCEEEEEECCe-EEEEEcCCCccc
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHA--SGELLAVASGHK-LYIWRYNMREET  225 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--~h~~~V~svafSP--DG~~LatgSdd~-I~IWDl~t~~~~  225 (768)
                      .|.+++|+|.++.+|++++.|++|++||+++++....+  .+...+..++|+|  ++++|++++.++ |++||+++++..
T Consensus       142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~  221 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV  221 (304)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc
Confidence            99999999977899999999999999999887765544  4667899999987  778999999654 999999988754


Q ss_pred             cCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L  268 (768)
                      .   .+.+|...|.+++|+|++++|++++.     +|++..++....+
T Consensus       222 ~---~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          222 A---TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             E---EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             e---eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence            4   67789999999999999998777765     7777765443333

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.92  E-value=1.3e-23  Score=226.65  Aligned_cols=172  Identities=15%  Similarity=0.164  Sum_probs=143.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           81 RRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~--------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      ...+++++.|+.|++||+.+++        +.+|...|++++|+|||++|++++.|++|++||+++++++..+++|...|
T Consensus       105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v  184 (357)
T 4g56_B          105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV  184 (357)
T ss_dssp             TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            4567788999999999997652        34799999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCeEEEEEcCCC-CEEEEEECC-eEEEEEcCCCccccC
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DFYRPIASIAFHASG-ELLAVASGH-KLYIWRYNMREETSS  227 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l---~h~~~V~svafSPDG-~~LatgSdd-~I~IWDl~t~~~~~~  227 (768)
                      ++++|+|++..++++++.|++|++||++++++...+   .+...+.+++|+|++ .+|++++.+ .|++||+++++... 
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~-  263 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ-  263 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE-
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE-
Confidence            999999955568999999999999999998876654   356789999999985 578888855 59999999887543 


Q ss_pred             CeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                        .+..|...|++++|+|++..++++++
T Consensus       264 --~~~~~~~~v~~l~~sp~~~~~lasgs  289 (357)
T 4g56_B          264 --TSAVHSQNITGLAYSYHSSPFLASIS  289 (357)
T ss_dssp             --EECCCSSCEEEEEECSSSSCCEEEEE
T ss_pred             --EEeccceeEEEEEEcCCCCCEEEEEe
Confidence              67788999999999999865555443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.92  E-value=3.7e-23  Score=226.97  Aligned_cols=190  Identities=25%  Similarity=0.354  Sum_probs=168.7

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      +...++..|++++.|++|++||..+.    .+.+|...|.+++|+|++++|++++.|++|++||+++++++..+.+|...
T Consensus       157 ~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~  236 (410)
T 1vyh_C          157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW  236 (410)
T ss_dssp             EECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence            34457789999999999999999875    57899999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCC--------------------CCEEEEEE
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS--------------------GELLAVAS  210 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPD--------------------G~~LatgS  210 (768)
                      |.++.|+| ++.+|++++.|++|++||++++++...+ .|...|.+++|+|+                    |.+|++++
T Consensus       237 v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          237 VRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             EEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence            99999999 9999999999999999999999888776 58889999999996                    67899999


Q ss_pred             CCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004203          211 GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (768)
Q Consensus       211 dd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~  269 (768)
                      .++ |++||++++....   .+.+|...|++++|+|+|++|++++.     +|++..++....+.
T Consensus       316 ~D~~i~iwd~~~~~~~~---~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~  377 (410)
T 1vyh_C          316 RDKTIKMWDVSTGMCLM---TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  377 (410)
T ss_dssp             TTSEEEEEETTTTEEEE---EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             CCCeEEEEECCCCceEE---EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence            655 9999999887543   67789999999999999998888765     88887665555554

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.92  E-value=1.3e-23  Score=223.94  Aligned_cols=171  Identities=16%  Similarity=0.244  Sum_probs=155.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa  156 (768)
                      ...+++++.|+.|++||+.++    .+.+|...|.+++|+|++++|++++.|++|++||+++++++..+.+|...|.+++
T Consensus       154 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
T 1got_B          154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC  233 (340)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE
T ss_pred             CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEE
Confidence            345899999999999999876    4789999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEee
Q 004203          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL  232 (768)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~---~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~  232 (768)
                      |+| ++++|++++.|++|++||+++++.+..+.+.   ..|.+++|+|+|++|+++++++ |++||+.+.+...   .+.
T Consensus       234 ~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~---~~~  309 (340)
T 1got_B          234 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG---VLA  309 (340)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEE
T ss_pred             EcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee---Eee
Confidence            999 9999999999999999999999888777654   3799999999999999999655 9999998877543   677


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe
Q 004203          233 RTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       233 ~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +|...|.+++|+|+|++|++++.
T Consensus       310 ~h~~~v~~~~~s~dg~~l~s~s~  332 (340)
T 1got_B          310 GHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEET
T ss_pred             cCCCcEEEEEEcCCCCEEEEEcC
Confidence            89999999999999998887764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.92  E-value=5e-23  Score=221.55  Aligned_cols=214  Identities=15%  Similarity=0.182  Sum_probs=172.2

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~----------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (768)
                      +...++..+++++.|+.+++|+....          .+.+|...|.+++|+|+++.|++++.|++|++||+++++.+..+
T Consensus       113 ~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~  192 (354)
T 2pbi_B          113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF  192 (354)
T ss_dssp             EECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence            34457788899999999999987543          24579999999999999999999999999999999999999999


Q ss_pred             ecCCCCcEEEEEccC-CCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC
Q 004203          146 HGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMR  222 (768)
Q Consensus       146 ~gH~g~V~sVafSP~-dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~  222 (768)
                      .+|...|.++.|+|. ++++|++++.|++|++||+++++++..+. |...|.+++|+|++.+|++++.|+ |++||++..
T Consensus       193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            999999999999884 46899999999999999999999988864 888999999999999999999655 999999887


Q ss_pred             ccccCCeEee--cCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCc
Q 004203          223 EETSSPRIVL--RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGL  295 (768)
Q Consensus       223 ~~~~~~~~l~--~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L  295 (768)
                      ....   ...  .+...+.+++|+|+|+++++++.     +|++..+..   +....                       
T Consensus       273 ~~~~---~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~---~~~l~-----------------------  323 (354)
T 2pbi_B          273 REVA---IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR---VSILF-----------------------  323 (354)
T ss_dssp             EEEE---EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE---EEEEC-----------------------
T ss_pred             cEEE---EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce---EEEEE-----------------------
Confidence            6432   222  22357899999999998777664     444443221   11111                       


Q ss_pred             ccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          296 AEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       296 ~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                           +...++...+|+|||+.|+....
T Consensus       324 -----~h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          324 -----GHENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             -----CCSSCEEEEEECTTSSCEEEEET
T ss_pred             -----CCCCcEEEEEECCCCCEEEEEcC
Confidence                 22335667899999999987543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.92  E-value=2.3e-23  Score=221.48  Aligned_cols=187  Identities=18%  Similarity=0.235  Sum_probs=165.5

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      .....+..+++++.|+.|++||+.++    .+..|...+.+++|+||+++|++++.|+.|++||+++++....+..|...
T Consensus        87 ~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~  166 (321)
T 3ow8_A           87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF  166 (321)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence            34456778999999999999999876    35688889999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCe
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR  229 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~  229 (768)
                      |.+++|+| ++++|++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++.++ |++||+++.+...   
T Consensus       167 v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~---  242 (321)
T 3ow8_A          167 ILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG---  242 (321)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE---
T ss_pred             EEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE---
Confidence            99999999 99999999999999999999999888775 788999999999999999999655 9999999877543   


Q ss_pred             EeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcce
Q 004203          230 IVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSL  266 (768)
Q Consensus       230 ~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~  266 (768)
                      .+.+|...|.+++|+|++++|++++.     +|++..++...
T Consensus       243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  284 (321)
T 3ow8_A          243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH  284 (321)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence            67789999999999999998887765     77777554333

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.92  E-value=9.8e-24  Score=227.77  Aligned_cols=177  Identities=15%  Similarity=0.153  Sum_probs=151.7

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEe--c
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLH--G  147 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~--g  147 (768)
                      .+...++..|++++.|+.|++||+.++    .+.+|...|++++|++++. +|++++.|++|++||+++++....+.  .
T Consensus       133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  212 (344)
T 4gqb_B          133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA  212 (344)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce
Confidence            334567899999999999999999887    4789999999999999885 78999999999999999999887774  4


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCC-CEEEEEECC-eEEEEEcCCCcc
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASG-ELLAVASGH-KLYIWRYNMREE  224 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG-~~LatgSdd-~I~IWDl~t~~~  224 (768)
                      |...+.+++|+|+++++|++|+.|++|+|||+++++++..+ .|...|.+++|+|++ ++|++++.| .|+|||+.+++.
T Consensus       213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred             eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence            55678999999977889999999999999999999988776 488999999999998 578889855 599999988764


Q ss_pred             ccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                          ....+|...|++++|+|+++.++++++
T Consensus       293 ----~~~~~H~~~V~~v~~sp~~~~llas~s  319 (344)
T 4gqb_B          293 ----FRSQAHRDFVRDATWSPLNHSLLTTVG  319 (344)
T ss_dssp             ----EEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             ----EEEcCCCCCEEEEEEeCCCCeEEEEEc
Confidence                346789999999999999998877665

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=4.4e-23  Score=222.39  Aligned_cols=245  Identities=18%  Similarity=0.152  Sum_probs=184.8

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      ....++..|++++.|+.|++||+.+.    .+.+|...|++++|+|++++|++++.|++|++||+++++.+..+.+|.+.
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  183 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT  183 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc
Confidence            34557889999999999999999876    36799999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec----CCCCeE---------------------EEEEcCCCCEE
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIA---------------------SIAFHASGELL  206 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~----h~~~V~---------------------svafSPDG~~L  206 (768)
                      |.+++|+| ++++|++++.|++|++||+++++.+..+.    +...+.                     +++|+|++++|
T Consensus       184 v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (420)
T 3vl1_A          184 VTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV  262 (420)
T ss_dssp             EEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEE
T ss_pred             EEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEE
Confidence            99999999 99999999999999999999999888764    333444                     45557899999


Q ss_pred             EEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCC-eEEEEEe-----eCCcCCCCc-ceeEeecCCc-c--
Q 004203          207 AVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA-PLLLTAE-----VNDLDSSES-SLTLATSPGY-W--  275 (768)
Q Consensus       207 atgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~-~LlaS~s-----vwdl~sg~~-~~~L~t~~G~-~--  275 (768)
                      ++++.++ |++||+++.+...  .....|...|.+++|+|+++ ++++++.     +|+++.+.. ...+....+. .  
T Consensus       263 ~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  340 (420)
T 3vl1_A          263 IAGHVSGVITVHNVFSKEQTI--QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINN  340 (420)
T ss_dssp             EEEETTSCEEEEETTTCCEEE--EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEE
T ss_pred             EEEcCCCeEEEEECCCCceeE--EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceE
Confidence            9999654 9999999876533  22335788999999999999 6666554     888886644 2333321111 0  


Q ss_pred             --------c---CCCCeEEEecCCCCCCCCcc------cccCCCCCCceEEEEecCCC---EEEEEec
Q 004203          276 --------R---YPPPVICMAGAHSSSHPGLA------EEVPLITPPFLRPSFVRDDE---RISLQHT  323 (768)
Q Consensus       276 --------~---~p~~~V~l~d~~s~d~~~L~------~~~~~~slpil~psFSpDG~---rIv~~~~  323 (768)
                              -   .....+.+|+...+......      .........+...+|+||++   +|++...
T Consensus       341 ~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~  408 (420)
T 3vl1_A          341 VYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK  408 (420)
T ss_dssp             EEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred             EEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence                    0   12345667775543222111      11112234555789999999   7776543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.91  E-value=1.6e-23  Score=226.89  Aligned_cols=248  Identities=13%  Similarity=0.163  Sum_probs=190.0

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-------EEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-------CLK  143 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-------~l~  143 (768)
                      .....++..|++++.|++|++||..++    .+..|...|.+++|+|+|++|++++.|+.|++||+.+..       ...
T Consensus        72 ~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~  151 (380)
T 3iz6_a           72 LDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSR  151 (380)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCcccee
Confidence            344567889999999999999999876    467899999999999999999999999999999987532       345


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe------cCCCCeEEEEEcC-CCCEEEEEECC-eEE
Q 004203          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR------DFYRPIASIAFHA-SGELLAVASGH-KLY  215 (768)
Q Consensus       144 ~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l------~h~~~V~svafSP-DG~~LatgSdd-~I~  215 (768)
                      .+.+|.+.|.++.|+|+++..|++++.|++|++||+++++.+..+      .|...|.+++|++ ++.+|++++.| .|+
T Consensus       152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~  231 (380)
T 3iz6_a          152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR  231 (380)
T ss_dssp             BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred             eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence            678999999999999966778999999999999999999988765      4778999999987 88899999955 499


Q ss_pred             EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCC-----------------
Q 004203          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG-----------------  273 (768)
Q Consensus       216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G-----------------  273 (768)
                      +||++....  ....+.+|...|++++|+|+|++|++++.     +||++.+.....+.....                 
T Consensus       232 ~wd~~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  309 (380)
T 3iz6_a          232 LWDLRITSR--AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS  309 (380)
T ss_dssp             EEETTTTCC--CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS
T ss_pred             EEECCCCCc--ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC
Confidence            999985432  23467789999999999999998887765     788876544333322111                 


Q ss_pred             -cc---cCCCCeEEEecCCCCCCCCcc-cccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          274 -YW---RYPPPVICMAGAHSSSHPGLA-EEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       274 -~~---~~p~~~V~l~d~~s~d~~~L~-~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                       ..   ......+.+|+...+...... ........++...+|+|||+.|+....|
T Consensus       310 g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  365 (380)
T 3iz6_a          310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD  365 (380)
T ss_dssp             SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT
T ss_pred             CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC
Confidence             00   012345667775544332211 1113345567789999999999876443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=5.1e-23  Score=226.66  Aligned_cols=188  Identities=17%  Similarity=0.152  Sum_probs=154.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecC--CC
Q 004203           80 ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--RR  150 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--~g  150 (768)
                      +...|++|+.||.|++||+.+.      ++.+|.+.|++++|+| |+++|++++.|++|++||++++........+  ..
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  210 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINI  210 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSC
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCc
Confidence            5678999999999999999765      3568999999999998 7899999999999999999877654444433  34


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCC-EEEEEECC-eEEEEEcCCCccccCC
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAVASGH-KLYIWRYNMREETSSP  228 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~-~LatgSdd-~I~IWDl~t~~~~~~~  228 (768)
                      .+.+++|+| ++.+|++|+.|+.|++||++.........|...|.+++|+|++. +|++++.| .|++||+++.+.....
T Consensus       211 ~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~  289 (435)
T 4e54_B          211 WFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF  289 (435)
T ss_dssp             CCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC
T ss_pred             cEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE
Confidence            577899999 99999999999999999997654444456899999999999987 67788754 5999999987665434


Q ss_pred             eEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L  268 (768)
                      .....|...|++++|+|+|++|++++.     +|++..++....+
T Consensus       290 ~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          290 LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence            445678999999999999998888775     7888776655444

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.2e-22  Score=213.82  Aligned_cols=176  Identities=20%  Similarity=0.265  Sum_probs=142.2

Q ss_pred             EEEEEeCCCeEEEEeCCCCC------C-CC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------CeEEEEEec
Q 004203           83 GLASWVEAESLHHLRPKYCP------L-SP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------GSCLKVLHG  147 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~~------L-~g-H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-------g~~l~~l~g  147 (768)
                      .|++++.|+.|++|++....      + .+ |...|.+++|+|++++|++++.|++|++||++.       .+.+..+.+
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  105 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG  105 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence            89999999999999998641      2 34 999999999999999999999999999999853       456788899


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC----cEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCC
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA----ECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNM  221 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg----~~i~~l-~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t  221 (768)
                      |.+.|.+++|+| ++++|++++.|++|++||++..    +++..+ .|...|.+++|+|++++|++++.| .|++||..+
T Consensus       106 h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          106 HENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD  184 (330)
T ss_dssp             ---CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred             CCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            999999999999 9999999999999999999532    345554 588899999999999999999955 599999977


Q ss_pred             CccccCCeEeecCCCCeEEEEEccC--CCeEEEEEe-----eCCcC
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE-----VNDLD  260 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPD--G~~LlaS~s-----vwdl~  260 (768)
                      .... ....+.+|...|.++.|+|+  +.++++++.     +|++.
T Consensus       185 ~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          185 DDWE-CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             TEEE-EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred             CCee-EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence            6321 12356789999999999999  555666554     66664

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.91  E-value=5.5e-22  Score=205.26  Aligned_cols=218  Identities=18%  Similarity=0.182  Sum_probs=178.4

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (768)
                      .....++..|++++.|+.|++||....+      +..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|
T Consensus       103 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~  182 (337)
T 1gxr_A          103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             EEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc
Confidence            3445577889999999999999998763      5689999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccC
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSS  227 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~  227 (768)
                      ...|.+++|+| +++++++++.|+.|++||+++++.+..+.+...+.+++|+|++++|++++. +.|++||+++.+.   
T Consensus       183 ~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~---  258 (337)
T 1gxr_A          183 TDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK---  258 (337)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE---
T ss_pred             cCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe---
Confidence            99999999999 999999999999999999999999998999999999999999999999995 4599999988754   


Q ss_pred             CeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce
Q 004203          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil  307 (768)
                       .....|...|.+++|+|+++++++++...                       .+.+|+..........    ....++.
T Consensus       259 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~~~~~~~~~~~~~~----~~~~~v~  310 (337)
T 1gxr_A          259 -YQLHLHESCVLSLKFAYCGKWFVSTGKDN-----------------------LLNAWRTPYGASIFQS----KESSSVL  310 (337)
T ss_dssp             -EEECCCSSCEEEEEECTTSSEEEEEETTS-----------------------EEEEEETTTCCEEEEE----ECSSCEE
T ss_pred             -EEEcCCccceeEEEECCCCCEEEEecCCC-----------------------cEEEEECCCCeEEEEe----cCCCcEE
Confidence             34667889999999999999887765411                       1222222221111000    0123466


Q ss_pred             EEEEecCCCEEEEEecC
Q 004203          308 RPSFVRDDERISLQHTE  324 (768)
Q Consensus       308 ~psFSpDG~rIv~~~~d  324 (768)
                      ...|++|++.|+....+
T Consensus       311 ~~~~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          311 SCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             EEEECTTSCEEEEEETT
T ss_pred             EEEECCCCCEEEEecCC
Confidence            78999999998876543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.91  E-value=1.9e-22  Score=217.04  Aligned_cols=175  Identities=17%  Similarity=0.245  Sum_probs=155.8

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      ...++..|++++.|++|++||++++    .+.+|...|.+++|+|  +|++|++++.|++|++||+++++++..+.+|..
T Consensus       162 ~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~  241 (354)
T 2pbi_B          162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES  241 (354)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence            3456778999999999999999877    4679999999999988  578999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCcccc
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVASGH-KLYIWRYNMREETS  226 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h---~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~  226 (768)
                      .|.+++|+| ++++|++++.|++|++||+++++.+..+..   ...+.+++|+|+|++|++++.+ .|++||+.+++...
T Consensus       242 ~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~  320 (354)
T 2pbi_B          242 DVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS  320 (354)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             CeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence            999999999 999999999999999999999887776643   3478999999999999999965 59999998877543


Q ss_pred             CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                         .+.+|...|.+++|+|||++|++++.
T Consensus       321 ---~l~~h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          321 ---ILFGHENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             ---EECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ---EEECCCCcEEEEEECCCCCEEEEEcC
Confidence               56789999999999999998887764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=8.6e-22  Score=210.87  Aligned_cols=242  Identities=12%  Similarity=0.082  Sum_probs=183.3

Q ss_pred             EEecCC-CEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203           76 AGRDAR-RGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (768)
Q Consensus        76 a~~d~g-~~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (768)
                      +...++ ..|++++.|+.|++||..+.+      +.+|...|.+++|+| ++++|++++.|+.|++||+++ +.+..+..
T Consensus        80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~  158 (383)
T 3ei3_B           80 EWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAK  158 (383)
T ss_dssp             EECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEEC
T ss_pred             EECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEec
Confidence            334455 899999999999999998662      347999999999999 789999999999999999986 55566654


Q ss_pred             CC---CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCC-EEEEEECC-eEEEEEcCC
Q 004203          148 HR---RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGE-LLAVASGH-KLYIWRYNM  221 (768)
Q Consensus       148 H~---g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~-~LatgSdd-~I~IWDl~t  221 (768)
                      +.   ..|.+++|+| ++++|++++.|+.|++||++ ++.+.. ..|...|.+++|+|+++ +|++++.+ .|++||+++
T Consensus       159 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          159 TDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             CCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             cCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            44   7899999999 99999999999999999995 555555 45889999999999999 89999855 599999998


Q ss_pred             CccccCCeEeecCCCCeEEEEEcc-CCCeEEEEEe-----eCCcCCCCcceeEeecCCcc--------------------
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHP-HAAPLLLTAE-----VNDLDSSESSLTLATSPGYW--------------------  275 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSP-DG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~--------------------  275 (768)
                      .+..........|...|.+++|+| ++++|++++.     +|+++.++....+.......                    
T Consensus       237 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  316 (383)
T 3ei3_B          237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVA  316 (383)
T ss_dssp             CCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEE
T ss_pred             CCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEE
Confidence            543323344557999999999999 9998887764     88888766655544321100                    


Q ss_pred             cC---------CCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203          276 RY---------PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (768)
Q Consensus       276 ~~---------p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~  321 (768)
                      .+         ....+.+|+..++.......... ....+...+|+||++.|+..
T Consensus       317 ~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          317 GRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             ECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEE
T ss_pred             EecCCcccccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEecCccEEEEe
Confidence            00         23568888876655433332211 11223356999999998875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.91  E-value=4.3e-22  Score=216.66  Aligned_cols=188  Identities=21%  Similarity=0.262  Sum_probs=157.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      .+...++..|++++.|+.|++||+.++    .+.+|...|++++|+|++++|++++.|++|++||++++++...+. +..
T Consensus       129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~  207 (393)
T 1erj_A          129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IED  207 (393)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence            344567889999999999999999876    478999999999999999999999999999999999999888876 556


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCC
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--------DFYRPIASIAFHASGELLAVASGH-KLYIWRYNM  221 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--------~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t  221 (768)
                      .+.+++|+|.++++|++++.|++|++||+++++.+..+        .|...|.+++|+|+|++|++++.+ .|++||+++
T Consensus       208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            79999999988999999999999999999999877664        477899999999999999999955 599999986


Q ss_pred             Ccccc---------CCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004203          222 REETS---------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (768)
Q Consensus       222 ~~~~~---------~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~  263 (768)
                      .....         ....+.+|...|.+++|+|++++|++++.     +|++..+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~  343 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN  343 (393)
T ss_dssp             -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence            43211         12345678899999999999998887764     66666543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.91  E-value=2.7e-22  Score=218.29  Aligned_cols=185  Identities=21%  Similarity=0.302  Sum_probs=153.9

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCC------------------CCeEEEEECCCCCEEEEEeCCCeEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCP----LSPPP------------------RSTIAAAFSPDGKTLASTHGDHTVK  132 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~------------------~~VtslafSPDG~~LaSgS~DgtVr  132 (768)
                      .+...++..|++++ ++.+++|+..++.    +..|.                  ..|.+++|+|||++|++++.|++|+
T Consensus        70 v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~  148 (393)
T 1erj_A           70 VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR  148 (393)
T ss_dssp             EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEE
Confidence            34456778888876 6899999998763    33332                  2499999999999999999999999


Q ss_pred             EEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcC-CCCEEEEEEC
Q 004203          133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASG  211 (768)
Q Consensus       133 VWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSP-DG~~LatgSd  211 (768)
                      +||+++++.+..+.+|...|.+++|+| ++++|++++.|++|++||++++++...+.+...+.+++|+| ++++|++++.
T Consensus       149 iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          149 IWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred             EEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcC
Confidence            999999999999999999999999999 99999999999999999999999988888889999999999 8999999995


Q ss_pred             Ce-EEEEEcCCCccccCC----eEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004203          212 HK-LYIWRYNMREETSSP----RIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (768)
Q Consensus       212 d~-I~IWDl~t~~~~~~~----~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~s  261 (768)
                      ++ |++||++++......    ....+|...|.+++|+|+|++|++++.     +|+++.
T Consensus       228 d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            55 999999887643310    112468899999999999998877664     666653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=3e-23  Score=220.86  Aligned_cols=176  Identities=16%  Similarity=0.203  Sum_probs=141.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCC
Q 004203           79 DARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~  149 (768)
                      .++..|++++.|+.|++||..+.      .+.+|...|++++|+|++++|++++.|++|++||+++++   ....+.+|.
T Consensus        21 ~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~  100 (377)
T 3dwl_C           21 SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN  100 (377)
T ss_dssp             SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCS
T ss_pred             CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC
Confidence            46778999999999999999864      477999999999999999999999999999999999887   677788999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---EEEe-c-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCc
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGSR-D-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMRE  223 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---i~~l-~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~  223 (768)
                      ..|.+++|+| ++++|++++.|+.|++||+++++.   ...+ . |...|.+++|+|++++|++++.+ .|++||+....
T Consensus       101 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  179 (377)
T 3dwl_C          101 RAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRD  179 (377)
T ss_dssp             SCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSS
T ss_pred             CceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecc
Confidence            9999999999 999999999999999999998873   4444 3 88999999999999999999965 59999996432


Q ss_pred             cc--------------cCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          224 ET--------------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       224 ~~--------------~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..              ........|...|.+++|+|+|++|++++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  225 (377)
T 3dwl_C          180 VDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH  225 (377)
T ss_dssp             CC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET
T ss_pred             cCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC
Confidence            10              001111278899999999999998887764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.91  E-value=9.1e-22  Score=227.11  Aligned_cols=187  Identities=17%  Similarity=0.239  Sum_probs=158.9

Q ss_pred             EEecCCCEEEEEeCC----CeEEEEeCCCC--CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203           76 AGRDARRGLASWVEA----ESLHHLRPKYC--PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        76 a~~d~g~~LvSgs~D----gsIrlWd~~t~--~L~gH~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (768)
                      +...++..|++++.+    +.|++||....  .+.+|...|++++|+|++. +|++++.|++|++||..++++...+.+|
T Consensus       110 ~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H  189 (611)
T 1nr0_A          110 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH  189 (611)
T ss_dssp             EECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC
T ss_pred             EECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccc
Confidence            344567788887765    47999986543  6889999999999999987 5999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEc
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--------DFYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--------~h~~~V~svafSPDG~~LatgSdd~-I~IWDl  219 (768)
                      .+.|++++|+| ++++|++++.|++|+|||+.+++++..+        .|.+.|.+++|+|||++|++++.|+ |++||+
T Consensus       190 ~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~  268 (611)
T 1nr0_A          190 TKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV  268 (611)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            99999999999 9999999999999999999999988776        5889999999999999999999655 999999


Q ss_pred             CCCccccC----------------------------------------CeEeecCCCCeEEEEEccCCCeEEEEEe----
Q 004203          220 NMREETSS----------------------------------------PRIVLRTRRSLRAVHFHPHAAPLLLTAE----  255 (768)
Q Consensus       220 ~t~~~~~~----------------------------------------~~~l~~h~~~V~sVaFSPDG~~LlaS~s----  255 (768)
                      .+++....                                        ...+.+|...|++++|+|||++|++++.    
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v  348 (611)
T 1nr0_A          269 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHI  348 (611)
T ss_dssp             TTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Confidence            87653210                                        1123468899999999999998887765    


Q ss_pred             -eCCcCCCC
Q 004203          256 -VNDLDSSE  263 (768)
Q Consensus       256 -vwdl~sg~  263 (768)
                       +|++..+.
T Consensus       349 ~~Wd~~~~~  357 (611)
T 1nr0_A          349 NSWDISTGI  357 (611)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCCc
Confidence             77776543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=1.9e-22  Score=235.41  Aligned_cols=181  Identities=17%  Similarity=0.186  Sum_probs=157.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC
Q 004203           79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~---------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (768)
                      ++...|++++.|++|++|++...         .+.+|...|.+++|+|||++|++|+.|++|+|||+.+++.+..+.+|.
T Consensus       393 ~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~  472 (694)
T 3dm0_A          393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT  472 (694)
T ss_dssp             TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCC
Confidence            45678999999999999998753         367899999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----cCCCCeEEEEEcCCC--CEEEEEECC-eEEEEEcCCC
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASG--ELLAVASGH-KLYIWRYNMR  222 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l----~h~~~V~svafSPDG--~~LatgSdd-~I~IWDl~t~  222 (768)
                      +.|.+++|+| ++++|++++.|++|+|||+.........    .|...|.+++|+|++  ..|++++.+ .|++||+++.
T Consensus       473 ~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~  551 (694)
T 3dm0_A          473 KDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC  551 (694)
T ss_dssp             SCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC
T ss_pred             CCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC
Confidence            9999999999 9999999999999999998765443332    477889999999987  578888855 5999999887


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~  263 (768)
                      +...   .+.+|...|++++|+|+|++|++++.     +||++.++
T Consensus       552 ~~~~---~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          552 KLRS---TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             CEEE---EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             cEEE---EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            6533   66789999999999999998887765     77877554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=9e-22  Score=207.05  Aligned_cols=223  Identities=15%  Similarity=0.153  Sum_probs=173.3

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCCe--EEEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS--CLKV  144 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPD--G~~LaSgS~DgtVrVWDl~tg~--~l~~  144 (768)
                      .+...++..|++++.|+.|++|+....      .+.+|...|++++|+++  +++|++++.|+.|++||+++++  .+..
T Consensus        17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~   96 (379)
T 3jrp_A           17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV   96 (379)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee
Confidence            344467889999999999999999733      47799999999999987  9999999999999999999987  7788


Q ss_pred             EecCCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCcE---EEEecCCCCeEEEEEcC-------------CCCEE
Q 004203          145 LHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHA-------------SGELL  206 (768)
Q Consensus       145 l~gH~g~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~sg~~---i~~l~h~~~V~svafSP-------------DG~~L  206 (768)
                      +.+|...|.+++|+| +  +.+|++++.|+.|++||++++..   .....|...|.+++|+|             ++.+|
T Consensus        97 ~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l  175 (379)
T 3jrp_A           97 HAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  175 (379)
T ss_dssp             ECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE
T ss_pred             ecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE
Confidence            889999999999999 7  89999999999999999998743   23346889999999999             69999


Q ss_pred             EEEECC-eEEEEEcCCCcccc-CCeEeecCCCCeEEEEEccC---CCeEEEEEe-----eCCcCCCCcceeEeecCCccc
Q 004203          207 AVASGH-KLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPH---AAPLLLTAE-----VNDLDSSESSLTLATSPGYWR  276 (768)
Q Consensus       207 atgSdd-~I~IWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPD---G~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~  276 (768)
                      ++++.+ .|++||+++..... ....+..|...|.+++|+|+   ++++++++.     +|+++.+.......       
T Consensus       176 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------  248 (379)
T 3jrp_A          176 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT-------  248 (379)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE-------
T ss_pred             EEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceee-------
Confidence            999955 59999998765432 12345568999999999999   776666653     44443321110000       


Q ss_pred             CCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          277 YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       277 ~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                             +            ........+++.++|+|||+.|+....+
T Consensus       249 -------~------------~~~~~~~~~v~~~~~s~~g~~l~~~~~d  277 (379)
T 3jrp_A          249 -------L------------LKEEKFPDVLWRASWSLSGNVLALSGGD  277 (379)
T ss_dssp             -------E------------SSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred             -------e------------eccccCCCcEEEEEEcCCCCEEEEecCC
Confidence                   0            0011123456688999999999886543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.90  E-value=9.6e-23  Score=215.32  Aligned_cols=178  Identities=16%  Similarity=0.134  Sum_probs=144.9

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCC--eEEEEEe
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG--SCLKVLH  146 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg--~~l~~l~  146 (768)
                      ...++..|++++.|++|++||+..+      .+.+|...|.+++|++  ++++|++++.|++|++||++++  +....+.
T Consensus        21 ~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~  100 (316)
T 3bg1_A           21 MDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA  100 (316)
T ss_dssp             ECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC
T ss_pred             EcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc
Confidence            3456789999999999999998754      4679999999999986  4899999999999999999987  4667788


Q ss_pred             cCCCCcEEEEEccCC-CCEEEEEeCCCeEEEEECCCCcEE---EE-ecCCCCeEEEEEcCC-----------------CC
Q 004203          147 GHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAECI---GS-RDFYRPIASIAFHAS-----------------GE  204 (768)
Q Consensus       147 gH~g~V~sVafSP~d-g~lLaSgS~DgtVrLWDl~sg~~i---~~-l~h~~~V~svafSPD-----------------G~  204 (768)
                      +|...|++++|+|++ +.+|++++.|++|++||++.+...   .. ..|...+.+++|+|+                 ++
T Consensus       101 ~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (316)
T 3bg1_A          101 GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK  180 (316)
T ss_dssp             CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCC
T ss_pred             CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccc
Confidence            999999999999932 789999999999999999876432   22 247788999999998                 46


Q ss_pred             EEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCC----CeEEEEE
Q 004203          205 LLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA----APLLLTA  254 (768)
Q Consensus       205 ~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG----~~LlaS~  254 (768)
                      +|++++.| .|++||++..........+.+|...|++++|+|++    ++|++++
T Consensus       181 ~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s  235 (316)
T 3bg1_A          181 RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS  235 (316)
T ss_dssp             BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred             eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence            89998855 59999997543211122456799999999999997    5555554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.90  E-value=6.6e-22  Score=209.19  Aligned_cols=175  Identities=18%  Similarity=0.225  Sum_probs=151.9

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      .+...++..|++++.|++|++||+.++    .+.+|...|.+++|+|++++|++++.|++|++||++ ++++..+.+|..
T Consensus        71 ~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~  149 (319)
T 3frx_A           71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND  149 (319)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSS
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCC
Confidence            344567889999999999999999887    477999999999999999999999999999999996 567888899999


Q ss_pred             CcEEEEEccC-----CCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCc
Q 004203          151 TPWVVRFHPL-----NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMRE  223 (768)
Q Consensus       151 ~V~sVafSP~-----dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~  223 (768)
                      .|.++.|+|.     ++..+++++.|++|++||+++++....+ +|...|.+++|+|+|++|++++.+ .|++||+.+.+
T Consensus       150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~  229 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK  229 (319)
T ss_dssp             CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999983     2348999999999999999998887765 588999999999999999999955 59999999886


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ...    ...+...|.+++|+|++.+++++.
T Consensus       230 ~~~----~~~~~~~v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          230 AMY----TLSAQDEVFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             EEE----EEECCSCEEEEEECSSSSEEEEEE
T ss_pred             EEE----EecCCCcEEEEEEcCCCCEEEEEc
Confidence            533    334567899999999999776654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.90  E-value=1.1e-21  Score=220.63  Aligned_cols=216  Identities=25%  Similarity=0.365  Sum_probs=170.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      .+...++..|++++.|+.|++|+....   .+.+|...|.+++|+|||++|++++.|+.|++||. +++.+..+.+|...
T Consensus       350 ~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~  428 (577)
T 2ymu_A          350 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS  428 (577)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCC
Confidence            344567889999999999999997544   46789999999999999999999999999999995 57888999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI  230 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~  230 (768)
                      |++++|+| ++++|++++.|++|++||+..........|...|.+++|+||+++|++++.++ |++||.. ++.   ...
T Consensus       429 v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~---~~~  503 (577)
T 2ymu_A          429 VWGVAFSP-DDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL---LQT  503 (577)
T ss_dssp             EEEEEECT-TSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCE---EEE
T ss_pred             eEEEEECC-CCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCE---EEE
Confidence            99999999 99999999999999999975443333456899999999999999999999655 9999964 333   235


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEE
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS  310 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~ps  310 (768)
                      +.+|...|++++|+|||++|++++...                       .+++|+.. +.   ......+...+++..+
T Consensus       504 ~~~h~~~v~~l~~s~dg~~l~s~~~dg-----------------------~v~lwd~~-~~---~~~~~~~h~~~v~~~~  556 (577)
T 2ymu_A          504 LTGHSSSVRGVAFSPDGQTIASASDDK-----------------------TVKLWNRN-GQ---LLQTLTGHSSSVWGVA  556 (577)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETTS-----------------------EEEEECTT-SC---EEEEEECCSSCEEEEE
T ss_pred             EeCCCCCEEEEEEcCCCCEEEEEECcC-----------------------EEEEEeCC-CC---EEEEEcCCCCCEEEEE
Confidence            778999999999999999888776411                       12222210 00   0011112334667889


Q ss_pred             EecCCCEEEEEec
Q 004203          311 FVRDDERISLQHT  323 (768)
Q Consensus       311 FSpDG~rIv~~~~  323 (768)
                      |+|||++|+....
T Consensus       557 fs~dg~~l~s~~~  569 (577)
T 2ymu_A          557 FSPDGQTIASASS  569 (577)
T ss_dssp             ECTTSSCEEEEET
T ss_pred             EcCCCCEEEEEeC
Confidence            9999999987544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.5e-21  Score=204.22  Aligned_cols=243  Identities=10%  Similarity=0.041  Sum_probs=184.0

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      .+...++..|++++.|+.|++||..++    .+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +..
T Consensus        38 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~  116 (369)
T 3zwl_B           38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPV  116 (369)
T ss_dssp             EEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSS
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCC
Confidence            334457889999999999999999876    477899999999999999999999999999999999999998888 888


Q ss_pred             CcEEEEEccCCCCEEEEEeCC-----CeEEEEECCCCcE------------EEEecCCC--CeEEEEEcCCCCEEEEEEC
Q 004203          151 TPWVVRFHPLNPTIIASGSLD-----HEVRLWNASTAEC------------IGSRDFYR--PIASIAFHASGELLAVASG  211 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~D-----gtVrLWDl~sg~~------------i~~l~h~~--~V~svafSPDG~~LatgSd  211 (768)
                      .|.+++|+| +++++++++.+     +.|++||+..+..            .....+..  .+.+++|+|++++|++++.
T Consensus       117 ~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  195 (369)
T 3zwl_B          117 PVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK  195 (369)
T ss_dssp             CEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET
T ss_pred             CeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC
Confidence            999999999 99999999999     9999999987542            11123444  8999999999999999985


Q ss_pred             C-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc--C-CC---
Q 004203          212 H-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR--Y-PP---  279 (768)
Q Consensus       212 d-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~--~-p~---  279 (768)
                      + .|++||+++...  ....+..|...|.+++|+|++++|++++.     +|+++.+.....+........  + +.   
T Consensus       196 dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (369)
T 3zwl_B          196 DGKISKYDVSNNYE--YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEF  273 (369)
T ss_dssp             TSEEEEEETTTTTE--EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSE
T ss_pred             CCEEEEEECCCCcE--eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCce
Confidence            4 599999988432  12356678899999999999998887764     788876554443331110000  0 00   


Q ss_pred             -------C--------------eEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          280 -------P--------------VICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       280 -------~--------------~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                             .              .+.+|+..........   .....++....|+||++.|+....|
T Consensus       274 l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d  336 (369)
T 3zwl_B          274 IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV---QGHFGPLNTVAISPQGTSYASGGED  336 (369)
T ss_dssp             EEEEECCC-------------CEEEEEETTTCCEEEEE---ECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe---ecccCcEEEEEECCCCCEEEEEcCC
Confidence                   0              3455554443322222   2334567789999999998876443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.90  E-value=1.4e-21  Score=208.92  Aligned_cols=180  Identities=21%  Similarity=0.301  Sum_probs=150.4

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eEEEEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVL  145 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg---~~l~~l  145 (768)
                      .+...++..|++++.|+.|++|+....      .+.+|...|.+++|+|++++|++++.|++|++||++++   +++..+
T Consensus        67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  146 (345)
T 3fm0_A           67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL  146 (345)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence            344567889999999999999998754      47799999999999999999999999999999999876   356778


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE--EEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCC
Q 004203          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI--GSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (768)
Q Consensus       146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i--~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t  221 (768)
                      .+|...|.+++|+| ++++|++++.|++|++||+++++..  ..+ +|...|.+++|+|+|++|++++.|+ |++||...
T Consensus       147 ~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          147 NSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             CCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             cCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            89999999999999 9999999999999999999887643  333 5889999999999999999999655 99999754


Q ss_pred             CccccC------------CeEeec-CCCCeEEEEEccCCCeEEEEEe
Q 004203          222 REETSS------------PRIVLR-TRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       222 ~~~~~~------------~~~l~~-h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ......            ...+.+ |...|.+++|+|++..+++++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~  272 (345)
T 3fm0_A          226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG  272 (345)
T ss_dssp             TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET
T ss_pred             CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC
Confidence            322110            011222 7789999999999998887765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.90  E-value=6.6e-21  Score=214.52  Aligned_cols=185  Identities=11%  Similarity=0.035  Sum_probs=153.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCC-eEEEEECC--CCCEEEEEeCCCeEEEEeCCCC------
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRS-TIAAAFSP--DGKTLASTHGDHTVKIIDCQTG------  139 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~--------~L~gH~~~-VtslafSP--DG~~LaSgS~DgtVrVWDl~tg------  139 (768)
                      ...++..|+.++ ++.|++|+..++        .+.+|... |++++|+|  |+++|++++.|+.|++||+.++      
T Consensus        26 ~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~  104 (615)
T 1pgu_A           26 YDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV  104 (615)
T ss_dssp             EETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE
T ss_pred             ECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccc
Confidence            335677777777 789999999865        26789999 99999999  9999999999999999999755      


Q ss_pred             --eEEEEEecCCCCcEEEEEccCCCCEEEEEeCC----CeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCC-EEEEEEC
Q 004203          140 --SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD----HEVRLWNASTAECIGSR-DFYRPIASIAFHASGE-LLAVASG  211 (768)
Q Consensus       140 --~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~D----gtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~-~LatgSd  211 (768)
                        +.+..+.+|...|.+++|+| +++++++++.|    +.|++||  .++.+..+ .|...|.+++|+|+++ +|++++.
T Consensus       105 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  181 (615)
T 1pgu_A          105 EVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD  181 (615)
T ss_dssp             EEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred             cccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeC
Confidence              67788889999999999999 99999999988    6888888  45555554 5888999999999998 7888885


Q ss_pred             -CeEEEEEcCCCccccCCeEeecCCC---CeEEEEEccC-CCeEEEEEe-----eCCcCCCCcceeE
Q 004203          212 -HKLYIWRYNMREETSSPRIVLRTRR---SLRAVHFHPH-AAPLLLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       212 -d~I~IWDl~t~~~~~~~~~l~~h~~---~V~sVaFSPD-G~~LlaS~s-----vwdl~sg~~~~~L  268 (768)
                       +.|++||+.+.+...   .+..|..   .|.+++|+|+ ++++++++.     +|+++.++....+
T Consensus       182 d~~v~vwd~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          182 DGSVVFYQGPPFKFSA---SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             TTEEEEEETTTBEEEE---EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             CCcEEEEeCCCcceee---eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence             459999998876543   5667888   9999999999 998887764     7777765543333

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.90  E-value=7.3e-22  Score=203.11  Aligned_cols=194  Identities=16%  Similarity=0.143  Sum_probs=156.7

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCC------
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG------  139 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~--------~L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg------  139 (768)
                      ....++..|++++.|+.|++||....        .+.+|...|++++|+|  |+++|++++.|+.|++||++++      
T Consensus        18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~   97 (351)
T 3f3f_A           18 VYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG   97 (351)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS
T ss_pred             EEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc
Confidence            34457889999999999999999864        2468999999999999  6999999999999999999887      


Q ss_pred             ---eEEEEEecCCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCcE------------------------------
Q 004203          140 ---SCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAEC------------------------------  184 (768)
Q Consensus       140 ---~~l~~l~gH~g~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~sg~~------------------------------  184 (768)
                         +.+..+.+|.+.|.+++|+| +  ++++++++.|+.|++||+++++.                              
T Consensus        98 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (351)
T 3f3f_A           98 RRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWC  176 (351)
T ss_dssp             CSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEEC
T ss_pred             cCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEec
Confidence               66888899999999999999 7  99999999999999999976542                              


Q ss_pred             ------------------------------EEEe-cCCCCeEEEEEcCCC----CEEEEEECCe-EEEEEcCCCccc---
Q 004203          185 ------------------------------IGSR-DFYRPIASIAFHASG----ELLAVASGHK-LYIWRYNMREET---  225 (768)
Q Consensus       185 ------------------------------i~~l-~h~~~V~svafSPDG----~~LatgSdd~-I~IWDl~t~~~~---  225 (768)
                                                    +..+ .|...|.+++|+|++    ++|++++.++ |++||++.....   
T Consensus       177 p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  256 (351)
T 3f3f_A          177 PSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS  256 (351)
T ss_dssp             CCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----
T ss_pred             cCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc
Confidence                                          1112 377899999999998    7899999554 999999874210   


Q ss_pred             ----------------------------------------cCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004203          226 ----------------------------------------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (768)
Q Consensus       226 ----------------------------------------~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~  260 (768)
                                                              .....+.+|...|++++|+|++++|++++.     +|++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          257 EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             ----------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence                                                    112234568899999999999998888764     66666


Q ss_pred             CCCcceeEee
Q 004203          261 SSESSLTLAT  270 (768)
Q Consensus       261 sg~~~~~L~t  270 (768)
                      .+.....+..
T Consensus       337 ~~~~~~~~~~  346 (351)
T 3f3f_A          337 YSNEFKCMSV  346 (351)
T ss_dssp             TTSCEEEEEE
T ss_pred             cCcchhheee
Confidence            5544444443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.89  E-value=1.3e-21  Score=212.22  Aligned_cols=191  Identities=12%  Similarity=0.141  Sum_probs=151.7

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC---------------CCCCCC------------CCeEEEEECCCC--CEEEEEe
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC---------------PLSPPP------------RSTIAAAFSPDG--KTLASTH  126 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~---------------~L~gH~------------~~VtslafSPDG--~~LaSgS  126 (768)
                      +...++..|++++.|+.|++|+..+.               .+.+|.            ..|++++|+|++  .+|++++
T Consensus        35 ~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s  114 (447)
T 3dw8_B           35 EFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLST  114 (447)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeC
Confidence            34457889999999999999998753               356898            889999999998  8999999


Q ss_pred             CCCeEEEEeCCCCeEE---------------------------------------EE-EecCCCCcEEEEEccCCCCEEE
Q 004203          127 GDHTVKIIDCQTGSCL---------------------------------------KV-LHGHRRTPWVVRFHPLNPTIIA  166 (768)
Q Consensus       127 ~DgtVrVWDl~tg~~l---------------------------------------~~-l~gH~g~V~sVafSP~dg~lLa  166 (768)
                      .|++|++||+.+++..                                       .. +.+|...|.+++|+| ++++|+
T Consensus       115 ~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~  193 (447)
T 3dw8_B          115 NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYL  193 (447)
T ss_dssp             CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEE
T ss_pred             CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEE
Confidence            9999999999775432                                       12 368999999999999 999999


Q ss_pred             EEeCCCeEEEEECCC-CcEEEEe--------cCCCCeEEEEEcCCC-CEEEEEECCe-EEEEEcCCCccccC-CeEeecC
Q 004203          167 SGSLDHEVRLWNAST-AECIGSR--------DFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMREETSS-PRIVLRT  234 (768)
Q Consensus       167 SgS~DgtVrLWDl~s-g~~i~~l--------~h~~~V~svafSPDG-~~LatgSdd~-I~IWDl~t~~~~~~-~~~l~~h  234 (768)
                      ++ .|+.|++||+++ ++....+        .|...|.+++|+|++ ++|++++.++ |++||+++++.... ...+..|
T Consensus       194 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  272 (447)
T 3dw8_B          194 SA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP  272 (447)
T ss_dssp             EE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC
T ss_pred             Ee-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccC
Confidence            98 799999999994 4454432        588899999999999 8999999655 99999998764211 2344555


Q ss_pred             CC------------CeEEEEEccCCCeEEEEEe----eCCcCC-CCcceeE
Q 004203          235 RR------------SLRAVHFHPHAAPLLLTAE----VNDLDS-SESSLTL  268 (768)
Q Consensus       235 ~~------------~V~sVaFSPDG~~LlaS~s----vwdl~s-g~~~~~L  268 (768)
                      ..            .|.+++|+|+|++|++++.    +|+++. +.....+
T Consensus       273 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~  323 (447)
T 3dw8_B          273 EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETY  323 (447)
T ss_dssp             -----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCE
T ss_pred             CCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccccee
Confidence            54            8999999999998887664    788875 4444333

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.89  E-value=2e-21  Score=202.52  Aligned_cols=150  Identities=21%  Similarity=0.375  Sum_probs=136.7

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s  181 (768)
                      .+.+|...|++++|+|++++|++++.|+.|++||+.+++....+.+|...|.+++|+| ++++|++++.|+.|++||+++
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~   96 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS   96 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCC
Confidence            4678999999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             CcEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          182 AECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       182 g~~i~~l-~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++++..+ .|...|.+++|+|++++|++++.+ .|++||+++++...   .+..|...|.++.|+|+++++++++.
T Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE---EecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            9988776 488899999999999999999955 49999999877543   56678899999999999998777664

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.89  E-value=8e-21  Score=196.52  Aligned_cols=216  Identities=11%  Similarity=0.081  Sum_probs=171.2

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC----C-----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--EEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCP----L-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLK  143 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~----L-----~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~--~l~  143 (768)
                      .+...++..|++++ |+.|++|+.....    +     .+|...|.+++|+|++++|++++.|+.|++||+++++  ...
T Consensus        57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  135 (337)
T 1gxr_A           57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred             EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence            33446778888888 9999999997652    2     2789999999999999999999999999999999887  667


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCC
Q 004203          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNM  221 (768)
Q Consensus       144 ~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t  221 (768)
                      .+.+|...|.+++|+| +++++++++.|+.|++||+++++.+..+. |...+.+++|+|++++|++++.+ .|++||+++
T Consensus       136 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  214 (337)
T 1gxr_A          136 ELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             EEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC
Confidence            7889999999999999 99999999999999999999999888765 78899999999999999999955 599999998


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCC
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL  301 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~  301 (768)
                      .+...    ...+...+.+++|+|+++++++++...                       .+.+++........    ...
T Consensus       215 ~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~~~-----------------------~i~~~~~~~~~~~~----~~~  263 (337)
T 1gxr_A          215 GRQLQ----QHDFTSQIFSLGYCPTGEWLAVGMESS-----------------------NVEVLHVNKPDKYQ----LHL  263 (337)
T ss_dssp             TEEEE----EEECSSCEEEEEECTTSSEEEEEETTS-----------------------CEEEEETTSSCEEE----ECC
T ss_pred             CceEe----eecCCCceEEEEECCCCCEEEEEcCCC-----------------------cEEEEECCCCCeEE----EcC
Confidence            86533    345788999999999999888776311                       12222221111100    111


Q ss_pred             CCCCceEEEEecCCCEEEEEec
Q 004203          302 ITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       302 ~slpil~psFSpDG~rIv~~~~  323 (768)
                      ...++....|++|++.++....
T Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~  285 (337)
T 1gxr_A          264 HESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEET
T ss_pred             CccceeEEEECCCCCEEEEecC
Confidence            2335668899999999887644

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.89  E-value=1.6e-21  Score=204.13  Aligned_cols=242  Identities=17%  Similarity=0.173  Sum_probs=181.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----C-----CCCCCCeEEEEECCC----CCEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP----L-----SPPPRSTIAAAFSPD----GKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~----L-----~gH~~~VtslafSPD----G~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (768)
                      +...++++..++.|++|+..+..    +     ..|...|++++|+|+    |++|++++.|+.|++||+++++.+..+.
T Consensus        33 ~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  112 (366)
T 3k26_A           33 GDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV  112 (366)
T ss_dssp             TSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred             CCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence            45667777777799999998652    1     237789999999998    6799999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCC
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASGELLAVASGH-KLYIWRYNM  221 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l----~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t  221 (768)
                      +|...|.+++|+|+++++|++++.|+.|++||+++++.+..+    .|...|.+++|+|++++|++++.+ .|++||+++
T Consensus       113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            999999999999978899999999999999999999988886    588999999999999999999955 599999987


Q ss_pred             CccccC-------------------------CeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCc-------
Q 004203          222 REETSS-------------------------PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSES-------  264 (768)
Q Consensus       222 ~~~~~~-------------------------~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~-------  264 (768)
                      .+....                         ......|...|.+++|+  ++++++++.     +|+++....       
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  270 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKP  270 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccccc
Confidence            654220                         01112288899999999  666666554     777665432       


Q ss_pred             ----ceeEeecCCc----------------c---cCCCCeEEEecCCCCCCCC-cccccCCC--CCCceEEEEecCCCEE
Q 004203          265 ----SLTLATSPGY----------------W---RYPPPVICMAGAHSSSHPG-LAEEVPLI--TPPFLRPSFVRDDERI  318 (768)
Q Consensus       265 ----~~~L~t~~G~----------------~---~~p~~~V~l~d~~s~d~~~-L~~~~~~~--slpil~psFSpDG~rI  318 (768)
                          ...+....++                .   ......+.+|+...+.... ........  ..++....|++|++.|
T Consensus       271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  350 (366)
T 3k26_A          271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL  350 (366)
T ss_dssp             TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeE
Confidence                0111111111                0   0123567778876654332 11122222  4677789999999999


Q ss_pred             EEEec
Q 004203          319 SLQHT  323 (768)
Q Consensus       319 v~~~~  323 (768)
                      +....
T Consensus       351 ~s~~~  355 (366)
T 3k26_A          351 IAVCD  355 (366)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            87544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.7e-21  Score=209.00  Aligned_cols=194  Identities=12%  Similarity=0.166  Sum_probs=160.9

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCC----C----CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCe-----
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKY----C----PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS-----  140 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t----~----~L~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg~-----  140 (768)
                      .+...++..|++++.|+.|++|+...    .    .+.+|...|++++|+|+ +++|++++.|+.|++||+++++     
T Consensus        73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  152 (416)
T 2pm9_A           73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN  152 (416)
T ss_dssp             EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred             EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence            34456788999999999999999987    1    47789999999999998 8999999999999999999886     


Q ss_pred             -EEE---EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-------CCCeEEEEEcCCC-CEEEE
Q 004203          141 -CLK---VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-------YRPIASIAFHASG-ELLAV  208 (768)
Q Consensus       141 -~l~---~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h-------~~~V~svafSPDG-~~Lat  208 (768)
                       ...   .+.+|...|.+++|+|+++.++++++.|+.|++||+++++.+..+..       ...+.+++|+|++ .+|++
T Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence             332   34679999999999994489999999999999999999998887753       6789999999997 58888


Q ss_pred             EECC----eEEEEEcCCCccccCCeEee-cCCCCeEEEEEcc-CCCeEEEEEe-----eCCcCCCCcceeEee
Q 004203          209 ASGH----KLYIWRYNMREETSSPRIVL-RTRRSLRAVHFHP-HAAPLLLTAE-----VNDLDSSESSLTLAT  270 (768)
Q Consensus       209 gSdd----~I~IWDl~t~~~~~~~~~l~-~h~~~V~sVaFSP-DG~~LlaS~s-----vwdl~sg~~~~~L~t  270 (768)
                      ++++    .|++||+++....  ...+. .|...|.+++|+| ++++|++++.     +|+++.++....+..
T Consensus       233 ~~~d~~~~~i~~~d~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          233 ATGSDNDPSILIWDLRNANTP--LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             EECCSSSCCCCEEETTSTTSC--SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred             EECCCCCceEEEEeCCCCCCC--cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence            8854    7999999986431  22344 6889999999999 8888887764     788877655555443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.89  E-value=4.4e-22  Score=215.63  Aligned_cols=175  Identities=18%  Similarity=0.231  Sum_probs=149.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC---------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC-CCeEEEEEecC
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP---------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGH  148 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~---------L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~-tg~~l~~l~gH  148 (768)
                      .+..|++++.|++|++||+.+++         ..+|...|.+++|++ ++++|++|+.|++|++||++ +++.+..+.+|
T Consensus       169 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h  248 (380)
T 3iz6_a          169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH  248 (380)
T ss_dssp             SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC
T ss_pred             CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc
Confidence            35579999999999999998763         168999999999987 89999999999999999998 45778899999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--------CCeEEEEEcCCCCEEEEEECCe-EEEEEc
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY--------RPIASIAFHASGELLAVASGHK-LYIWRY  219 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~--------~~V~svafSPDG~~LatgSdd~-I~IWDl  219 (768)
                      .+.|++++|+| ++++|++++.|++|++||+++++.+..+...        ..|.+++|+|+|++|++++.++ |++||+
T Consensus       249 ~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~  327 (380)
T 3iz6_a          249 EGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT  327 (380)
T ss_dssp             SSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred             CCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            99999999999 9999999999999999999999988776421        2488999999999999998554 999999


Q ss_pred             CCCccccCC-eEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          220 NMREETSSP-RIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       220 ~t~~~~~~~-~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .+++..... ....+|...|.+++|+|||++|++++.
T Consensus       328 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          328 LLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             TTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred             CCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence            887653311 011468899999999999998777654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.89  E-value=4.6e-22  Score=214.54  Aligned_cols=177  Identities=15%  Similarity=0.112  Sum_probs=151.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEe--c
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLH--G  147 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~--g  147 (768)
                      .+...++..|++++.|+.|++||..++    .+.+|...|++++|+++++ +|++++.|++|++||+++++....+.  .
T Consensus       145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~  224 (357)
T 4g56_B          145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA  224 (357)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc
Confidence            345567889999999999999999877    4789999999999999875 78999999999999999988765543  5


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCC-CEEEEEECC-eEEEEEcCCCcc
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASG-ELLAVASGH-KLYIWRYNMREE  224 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG-~~LatgSdd-~I~IWDl~t~~~  224 (768)
                      |...+.+++|+|+++.+|++|+.|+.|++||+++++++..+. |...|.+++|+|++ ++|++++.| .|+|||+++++.
T Consensus       225 ~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~  304 (357)
T 4g56_B          225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV  304 (357)
T ss_dssp             CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred             ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            667899999999667899999999999999999998887764 78899999999997 578888855 599999988765


Q ss_pred             ccCCeEeecCCCCeEEEEEcc-CCCeEEEEEe
Q 004203          225 TSSPRIVLRTRRSLRAVHFHP-HAAPLLLTAE  255 (768)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSP-DG~~LlaS~s  255 (768)
                      .    ...+|...|++|+|+| |+++|++++.
T Consensus       305 ~----~~~~H~~~V~~vafsP~d~~~l~s~s~  332 (357)
T 4g56_B          305 F----RDLSHRDFVTGVAWSPLDHSKFTTVGW  332 (357)
T ss_dssp             E----EECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred             e----EECCCCCCEEEEEEeCCCCCEEEEEcC
Confidence            3    3568999999999999 7786666653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=1.1e-20  Score=196.45  Aligned_cols=242  Identities=16%  Similarity=0.182  Sum_probs=183.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC
Q 004203           79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~---------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (768)
                      +.+..|++++.|++|++||+...         .+.+|...|.+++|+|||++|++++.|+.|++|+............+.
T Consensus        49 ~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~  128 (340)
T 4aow_A           49 QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT  128 (340)
T ss_dssp             TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCC
Confidence            34678999999999999998753         367899999999999999999999999999999999999988888899


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--ecCCCCeEEEEEcCCC--CEEEEEECC-eEEEEEcCCCcc
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASG--ELLAVASGH-KLYIWRYNMREE  224 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~h~~~V~svafSPDG--~~LatgSdd-~I~IWDl~t~~~  224 (768)
                      ..+..+.+++ ++.+|++++.|+.+++||+........  ..|...+..++|++++  .++++++.+ .|++||+++.+.
T Consensus       129 ~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~  207 (340)
T 4aow_A          129 KDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL  207 (340)
T ss_dssp             SCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE
T ss_pred             CceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce
Confidence            9999999999 899999999999999999987665443  3578899999999876  467777754 599999998876


Q ss_pred             ccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCc----------cc--CCCCeEEEecC
Q 004203          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY----------WR--YPPPVICMAGA  287 (768)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~----------~~--~p~~~V~l~d~  287 (768)
                      ..   .+.+|...|++++|+|++++|++++.     +|+++.......+......          +-  .....+.+|+.
T Consensus       208 ~~---~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~  284 (340)
T 4aow_A          208 KT---NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDL  284 (340)
T ss_dssp             EE---EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEET
T ss_pred             ee---EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEEC
Confidence            44   66789999999999999998887664     7777755443333221110          00  01244566665


Q ss_pred             CCCCCCC------cccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          288 HSSSHPG------LAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       288 ~s~d~~~------L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                      .......      ...........+...+|+|||+.|+....|
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  327 (340)
T 4aow_A          285 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD  327 (340)
T ss_dssp             TTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence            4322111      111122345567789999999999876544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.89  E-value=3e-20  Score=229.21  Aligned_cols=199  Identities=20%  Similarity=0.323  Sum_probs=158.4

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s  181 (768)
                      .+.+|.+.|++++|+|||++|++++.|++|++||+.+++.+..+.+|.+.|.+++|+| +++++++++.|++|++||+.+
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCC
Confidence            3568999999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             CcEEEEe-cCCCCeEEEEEcCC--CCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe--
Q 004203          182 AECIGSR-DFYRPIASIAFHAS--GELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--  255 (768)
Q Consensus       182 g~~i~~l-~h~~~V~svafSPD--G~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s--  255 (768)
                      ++.+..+ .|...|.+++|+|+  +.++++++.++ |++||+++++...   .+.+|...|.+++|+|+++++++++.  
T Consensus       689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~sp~~~~l~s~s~dg  765 (1249)
T 3sfz_A          689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFSPDDELLASCSADG  765 (1249)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred             CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEEEEEecCCCEEEEEECCC
Confidence            9988886 58889999999994  55888888654 9999999887543   66789999999999999998887765  


Q ss_pred             ---eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEe
Q 004203          256 ---VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (768)
Q Consensus       256 ---vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~  322 (768)
                         +|++..+.....+........                  ...........+...+|++||+.+++..
T Consensus       766 ~v~vwd~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~v~~~~~s~dg~~l~~~~  817 (1249)
T 3sfz_A          766 TLRLWDVRSANERKSINVKRFFLS------------------SEDPPEDVEVIVKCCSWSADGDKIIVAA  817 (1249)
T ss_dssp             EEEEEEGGGTEEEEEEECCCCC--------------------------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred             eEEEEeCCCCcccceecccccccc------------------cCCccccccceEEEEEECCCCCEEEEEc
Confidence               666664433222221111000                  0000111222344678999999999854

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.89  E-value=2.4e-21  Score=209.82  Aligned_cols=178  Identities=18%  Similarity=0.221  Sum_probs=153.1

Q ss_pred             EEec-CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeEE
Q 004203           76 AGRD-ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCL  142 (768)
Q Consensus        76 a~~d-~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~l  142 (768)
                      +... ++..|++++.|+.|++|++.+.           .+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+
T Consensus        88 ~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  167 (402)
T 2aq5_A           88 AWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV  167 (402)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc
Confidence            3444 7889999999999999999865           245899999999999998 69999999999999999999999


Q ss_pred             EEE--ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCC-eEEEEEcCCCCEEEEE---E-CCe
Q 004203          143 KVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRP-IASIAFHASGELLAVA---S-GHK  213 (768)
Q Consensus       143 ~~l--~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--~h~~~-V~svafSPDG~~Latg---S-dd~  213 (768)
                      ..+  .+|.+.|.+++|+| ++++|++++.|+.|++||+++++.+..+  .|.+. +..++|+|++++|+++   + ++.
T Consensus       168 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~  246 (402)
T 2aq5_A          168 LTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ  246 (402)
T ss_dssp             EEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE
T ss_pred             EEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce
Confidence            999  88999999999999 9999999999999999999999988876  46554 8999999999999998   4 445


Q ss_pred             EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       214 I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |++||+++.+... ......+...+.++.|+|+++++++++.
T Consensus       247 i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~g~  287 (402)
T 2aq5_A          247 VALWDTKHLEEPL-SLQELDTSSGVLLPFFDPDTNIVYLCGK  287 (402)
T ss_dssp             EEEEETTBCSSCS-EEEECCCCSSCEEEEEETTTTEEEEEET
T ss_pred             EEEEcCccccCCc-eEEeccCCCceeEEEEcCCCCEEEEEEc
Confidence            9999998876422 1223357788999999999998876663

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.9e-21  Score=204.22  Aligned_cols=179  Identities=22%  Similarity=0.286  Sum_probs=141.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC----C
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT----G  139 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t----g  139 (768)
                      .+...++..|++++.|+.|++|+....           .+.+|...|.+++|+|+|++|++++.|++|++||++.    .
T Consensus        64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~  143 (330)
T 2hes_X           64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY  143 (330)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe
Confidence            344567889999999999999998421           3679999999999999999999999999999999943    3


Q ss_pred             eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC--cEEEEe-cCCCCeEEEEEcCC--CCEEEEEECCe-
Q 004203          140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGSR-DFYRPIASIAFHAS--GELLAVASGHK-  213 (768)
Q Consensus       140 ~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg--~~i~~l-~h~~~V~svafSPD--G~~LatgSdd~-  213 (768)
                      +++..+.+|...|.+++|+| ++.+|++++.|++|++||+.++  +++..+ +|...|.+++|+|+  +.+|++++.|+ 
T Consensus       144 ~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          144 ECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             EEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             EEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence            56788999999999999999 9999999999999999999876  455555 58899999999999  67899999655 


Q ss_pred             EEEEEcCCCccc-----cCCeEeec-CCCCeEEEEEccCCCeEEEEEe
Q 004203          214 LYIWRYNMREET-----SSPRIVLR-TRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       214 I~IWDl~t~~~~-----~~~~~l~~-h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |++||++.....     .....+.. |...|.+++|++++ +|++++.
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~  269 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA  269 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC
Confidence            999999764211     00112223 78899999999776 4666554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=3.5e-22  Score=217.97  Aligned_cols=232  Identities=11%  Similarity=0.105  Sum_probs=156.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECC--------CCCEEEEEeCCCeEEEEeCCCCeEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSP--------DGKTLASTHGDHTVKIIDCQTGSCL  142 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~---------~L~gH~~~VtslafSP--------DG~~LaSgS~DgtVrVWDl~tg~~l  142 (768)
                      .+..|++++.|++|++||...+         .+.+|.+.|++++|+|        ||++|++++.|++|+|||++++.++
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~  179 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI  179 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence            4567999999999999998765         4789999999999998        8999999999999999999999888


Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--------------------------ecCCCCeEE
Q 004203          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--------------------------RDFYRPIAS  196 (768)
Q Consensus       143 ~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--------------------------l~h~~~V~s  196 (768)
                      ..+.+|...|.+++|+|++..+|++++.|++|++||+++++....                          ..|...+.+
T Consensus       180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~  259 (393)
T 4gq1_A          180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLAN  259 (393)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSE
T ss_pred             eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccccee
Confidence            888889999999999995556899999999999999998764322                          135567888


Q ss_pred             EEEc-CCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC-C-CCcceeEeecC
Q 004203          197 IAFH-ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD-S-SESSLTLATSP  272 (768)
Q Consensus       197 vafS-PDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~-s-g~~~~~L~t~~  272 (768)
                      +.|+ ||++.|++++.++ +++||+.......   .+..+...+..+.+.|+++.+.......... . ......+... 
T Consensus       260 v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg-  335 (393)
T 4gq1_A          260 VRWIGSDGSGILAMCKSGAWLRWNLFANNDYN---EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH-  335 (393)
T ss_dssp             EEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE-
T ss_pred             eeeecCCCCEEEEEeCCCCEEEEECccCCCCc---eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE-
Confidence            8886 8999999999554 9999998876533   4455666777777777654322111100000 0 0000111110 


Q ss_pred             CcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEe
Q 004203          273 GYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (768)
Q Consensus       273 G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~  322 (768)
                      +    ....|.+|+..++........   ...++...+|+|||+.|++.-
T Consensus       336 s----~Dg~V~lwd~~~~~~~~~~~~---~~~~V~svafspdG~~LA~as  378 (393)
T 4gq1_A          336 S----QHGLIQLINTYEKDSNSIPIQ---LGMPIVDFCWHQDGSHLAIAT  378 (393)
T ss_dssp             T----TTTEEEEEETTCTTCCEEEEE---CSSCEEEEEECTTSSEEEEEE
T ss_pred             C----CCCEEEEEECCCCcEEEEecC---CCCcEEEEEEcCCCCEEEEEe
Confidence            0    124688888776655443332   344788999999999999853

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.88  E-value=1e-20  Score=201.51  Aligned_cols=183  Identities=16%  Similarity=0.214  Sum_probs=147.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe---c
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH---G  147 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~---g  147 (768)
                      .+...++..+++++.|+.|++||+.++    .+.+|...|.+++|+||+++|++++.|++|++||+.. +....+.   +
T Consensus        82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~  160 (343)
T 2xzm_R           82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKEN  160 (343)
T ss_dssp             EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTS
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccC
Confidence            334567889999999999999999876    4679999999999999999999999999999999984 3343333   7


Q ss_pred             CCCCcEEEEEccCCC----------CEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEECC-eEE
Q 004203          148 HRRTPWVVRFHPLNP----------TIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGH-KLY  215 (768)
Q Consensus       148 H~g~V~sVafSP~dg----------~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSdd-~I~  215 (768)
                      |...|.+++|+| ++          .++++++.|++|++||.. .+.... ..|...|.+++|+|+|++|++++.+ .|+
T Consensus       161 ~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          161 HSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL  238 (343)
T ss_dssp             CSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             CCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence            889999999999 54          789999999999999954 444444 4688999999999999999999955 599


Q ss_pred             EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe----eCCcCCCC
Q 004203          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSE  263 (768)
Q Consensus       216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s----vwdl~sg~  263 (768)
                      +||+......   .....+...|.+++|+|++++++++..    +|++....
T Consensus       239 iwd~~~~~~~---~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          239 IWDILNLTYP---QREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQS  287 (343)
T ss_dssp             EEESSCCSSC---SEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred             EEECCCCccc---ceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence            9999654432   233445667999999999986654432    67766543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.88  E-value=1e-20  Score=205.41  Aligned_cols=236  Identities=15%  Similarity=0.212  Sum_probs=182.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L-----~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      +..+++++.|+.|++|+..+++.     ..|...|++++|+|++++|++++.|+.|++||+++++.+..+.+|...|.++
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  182 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL  182 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence            45688899999999999988732     2489999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEee
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNAST-AECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVL  232 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~s-g~~i~~l-~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~  232 (768)
                      .|++   +++++++.|+.|++||++. +..+..+ .|...|.+++|+|++++|++++.+ .|++||+++.....   .+.
T Consensus       183 ~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~  256 (401)
T 4aez_A          183 SWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF---TKT  256 (401)
T ss_dssp             EEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE---EEC
T ss_pred             EECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE---Eec
Confidence            9954   7999999999999999994 4445444 588999999999999999999965 59999999876533   566


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe--------eCCcCCCCcceeEeecC----------Ccc-----cCCCCeEEEecCCC
Q 004203          233 RTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSSESSLTLATSP----------GYW-----RYPPPVICMAGAHS  289 (768)
Q Consensus       233 ~h~~~V~sVaFSPDG~~LlaS~s--------vwdl~sg~~~~~L~t~~----------G~~-----~~p~~~V~l~d~~s  289 (768)
                      .|...|.+++|+|++..+++++.        +|+++.+.....+....          +..     .+....+.+|+..+
T Consensus       257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            78999999999999887777642        77877665443332111          100     11235566666554


Q ss_pred             CCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          290 SSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       290 ~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                      +....... ......++....|+|||+.|+....
T Consensus       337 ~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          337 SGLTKQVD-IPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             TEEEEEEE-EECCSSCCCEEEECTTSSEEEEECT
T ss_pred             ccceeEEE-ecCCCCCEEEEEECCCCCEEEEEeC
Confidence            33222221 2234456778899999999987544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.88  E-value=8.1e-21  Score=200.11  Aligned_cols=178  Identities=15%  Similarity=0.150  Sum_probs=147.5

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE--EecC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV--LHGH  148 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~--l~gH  148 (768)
                      ...++..|++++.|+.|++||..+.      .+.+|...|.+++|+|++++|++++.|+.|++||+++++....  +..|
T Consensus        16 ~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~   95 (372)
T 1k8k_C           16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI   95 (372)
T ss_dssp             ECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC
Confidence            3457788999999999999999876      3568999999999999999999999999999999999875544  3678


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---EEE--ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCC
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGS--RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMR  222 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---i~~--l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~  222 (768)
                      ...|.+++|+| ++++|++++.|+.|++||++.++.   ...  ..|...|.+++|+|++++|++++.+ .|++||++..
T Consensus        96 ~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  174 (372)
T 1k8k_C           96 NRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  174 (372)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             CCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccc
Confidence            99999999999 899999999999999999998763   222  3478899999999999999999954 5999997521


Q ss_pred             c---------------cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 E---------------ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~---------------~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .               .......+..|...|.+++|+|+++++++++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  222 (372)
T 1k8k_C          175 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH  222 (372)
T ss_dssp             TTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC
Confidence            1               00112234478889999999999998877664

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.88  E-value=3.7e-21  Score=201.04  Aligned_cols=176  Identities=13%  Similarity=0.177  Sum_probs=145.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCCe--EEEEEecCC
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS--CLKVLHGHR  149 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSPD--G~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH~  149 (768)
                      .+..|++++.|++|++||+.++.      +.+|...|.+++|+|+  |++|++++.|++|++||++++.  ....+.+|.
T Consensus        66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~  145 (297)
T 2pm7_B           66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (297)
T ss_dssp             GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred             cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence            37899999999999999998652      4679999999999997  8999999999999999998763  246778999


Q ss_pred             CCcEEEEEccCC------------CCEEEEEeCCCeEEEEECCCCc----EEEEe-cCCCCeEEEEEcCCC---CEEEEE
Q 004203          150 RTPWVVRFHPLN------------PTIIASGSLDHEVRLWNASTAE----CIGSR-DFYRPIASIAFHASG---ELLAVA  209 (768)
Q Consensus       150 g~V~sVafSP~d------------g~lLaSgS~DgtVrLWDl~sg~----~i~~l-~h~~~V~svafSPDG---~~Latg  209 (768)
                      ..|.+++|+|+.            +++|++++.|++|+|||+++++    ....+ .|...|.+++|+|++   ++|+++
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~  225 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV  225 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence            999999999931            5799999999999999998865    34444 588999999999995   789999


Q ss_pred             ECC-eEEEEEcCCCccccCCeEe--ecCCCCeEEEEEccCCCeEEEEEe
Q 004203          210 SGH-KLYIWRYNMREETSSPRIV--LRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       210 Sdd-~I~IWDl~t~~~~~~~~~l--~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +.| .|++||++..........+  ..|...|.+++|+|+|++|++++.
T Consensus       226 s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~  274 (297)
T 2pm7_B          226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (297)
T ss_dssp             ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred             ECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence            955 4999999875321101112  356788999999999998887765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.88  E-value=5.7e-21  Score=199.71  Aligned_cols=227  Identities=15%  Similarity=0.152  Sum_probs=169.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEE------ECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEecC
Q 004203           81 RRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAA------FSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGH  148 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~-----L~gH~~~Vtsla------fSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH  148 (768)
                      +..|++++.|+.|++||....+     +.+|...|.+++      |+|++++|++++.|+.|++||+++++ .+..+..|
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  159 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV  159 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred             CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence            6889999999999999998653     678999999995      57899999999999999999999987 67888766


Q ss_pred             CC----CcEEEE----EccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcC---CCCEEEEEEC-CeEEE
Q 004203          149 RR----TPWVVR----FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA---SGELLAVASG-HKLYI  216 (768)
Q Consensus       149 ~g----~V~sVa----fSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSP---DG~~LatgSd-d~I~I  216 (768)
                      .+    .++++.    |+| +++++++++.|+.|++||+++++......+...|.+++|+|   ++.+|++++. +.|++
T Consensus       160 ~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  238 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV  238 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred             CCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence            55    788888    678 99999999999999999999999888888999999999999   9999999985 55999


Q ss_pred             EEcCCCccccCCe--EeecCCCCeEEEEEccCCCe-EEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCC
Q 004203          217 WRYNMREETSSPR--IVLRTRRSLRAVHFHPHAAP-LLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAH  288 (768)
Q Consensus       217 WDl~t~~~~~~~~--~l~~h~~~V~sVaFSPDG~~-LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~  288 (768)
                      ||+++.+......  ....|...|.+++|+|+++. +++++.     +|+++......... ..+.........      
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~g~~~~~~~~~------  311 (357)
T 3i2n_A          239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD-SEGIEMGVAGSV------  311 (357)
T ss_dssp             EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC-TTSCCCCCCCEE------
T ss_pred             EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc-CCCCcccccccc------
Confidence            9998876533111  22378999999999999994 555443     56665433221110 111100000000      


Q ss_pred             CCCCCCcccccCCCCCCceEEEEecCCCEEEE
Q 004203          289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (768)
Q Consensus       289 s~d~~~L~~~~~~~slpil~psFSpDG~rIv~  320 (768)
                           ...........++...+|+||++.+++
T Consensus       312 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~  338 (357)
T 3i2n_A          312 -----SLLQNVTLSTQPISSLDWSPDKRGLCV  338 (357)
T ss_dssp             -----EEEEEEECCSSCEEEEEECSSSTTEEE
T ss_pred             -----ceeeccccCCCCeeEEEEcCCCCeEEE
Confidence                 011112223446778999999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.88  E-value=3.6e-20  Score=202.65  Aligned_cols=237  Identities=14%  Similarity=0.175  Sum_probs=182.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      +..|+.+ .|++|++||..+++      +.+|...|++++|+|||++|++|+.|++|+|||+++++++..+.+|...+.+
T Consensus       116 ~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~  194 (420)
T 4gga_A          116 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS  194 (420)
T ss_dssp             TSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence            3455544 59999999999873      4578899999999999999999999999999999999999999999999988


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc-CCeE
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS-SPRI  230 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~-l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~-~~~~  230 (768)
                      +.|+   +.++++|+.|+.+++||...... +.. ..|...+..+.|+|++++|++++.++ +++||..+++... ....
T Consensus       195 ~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~  271 (420)
T 4gga_A          195 LSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT  271 (420)
T ss_dssp             EEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred             EeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee
Confidence            8775   58999999999999999987543 333 45889999999999999999999655 9999998876432 2334


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEe--------eCCcCCCCcceeEeecCCcc---------------cCCCCeEEEecC
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSSESSLTLATSPGYW---------------RYPPPVICMAGA  287 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~s--------vwdl~sg~~~~~L~t~~G~~---------------~~p~~~V~l~d~  287 (768)
                      ...|...|.+++|+|++..+++++.        +|++..+.....+.......               .+....|.+|+.
T Consensus       272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~  351 (420)
T 4gga_A          272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY  351 (420)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred             ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence            5668899999999999887776542        77777654433332211110               113456888887


Q ss_pred             CCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          288 HSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       288 ~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                      .+......   ..+...+++..+|+|||+.|+..-.|
T Consensus       352 ~~~~~v~~---l~gH~~~V~~l~~spdg~~l~S~s~D  385 (420)
T 4gga_A          352 PTMAKVAE---LKGHTSRVLSLTMSPDGATVASAAAD  385 (420)
T ss_dssp             TTCCEEEE---ECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CCCcEEEE---EcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            66544332   34456688899999999999875443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.88  E-value=3.5e-20  Score=208.47  Aligned_cols=173  Identities=28%  Similarity=0.405  Sum_probs=150.5

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      +...++..+++++.|+.|++||....   .+.+|...|.+++|+|||++|++++.|+.|++||. +++.+..+.+|...|
T Consensus       310 ~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v  388 (577)
T 2ymu_A          310 AFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  388 (577)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCE
T ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe
Confidence            34557889999999999999998765   46789999999999999999999999999999995 678889999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI  230 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~  230 (768)
                      .+++|+| ++++|++++.|+.|++||.. ++.+.. ..|...|.+++|+||+++|++++.++ |++||.... .   ...
T Consensus       389 ~~~~~s~-dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-~---~~~  462 (577)
T 2ymu_A          389 RGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-L---LQT  462 (577)
T ss_dssp             EEEEECT-TSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-E---EEE
T ss_pred             EEEEECC-CCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-E---EEE
Confidence            9999999 99999999999999999964 455554 56889999999999999999999655 999997543 2   235


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEe
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +..|...|++++|+||+++|++++.
T Consensus       463 ~~~~~~~v~~~~~spd~~~las~~~  487 (577)
T 2ymu_A          463 LTGHSSSVRGVAFSPDGQTIASASD  487 (577)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEET
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            6789999999999999998877654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1e-20  Score=201.63  Aligned_cols=239  Identities=12%  Similarity=0.154  Sum_probs=179.2

Q ss_pred             EecCCC-EEEEEeCCCeEEEEeC----CCCC--------------CCC------CCCCeEEEEECCCCCEEEEEeCCCeE
Q 004203           77 GRDARR-GLASWVEAESLHHLRP----KYCP--------------LSP------PPRSTIAAAFSPDGKTLASTHGDHTV  131 (768)
Q Consensus        77 ~~d~g~-~LvSgs~DgsIrlWd~----~t~~--------------L~g------H~~~VtslafSPDG~~LaSgS~DgtV  131 (768)
                      ...++. .|++++.|+.|++|++    .+++              +.+      |...|++++|+|++++|++++.|+.|
T Consensus        53 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  132 (425)
T 1r5m_A           53 WNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGEL  132 (425)
T ss_dssp             ECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeE
Confidence            345566 9999999999999999    6443              122      67899999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCC---------------eE
Q 004203          132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRP---------------IA  195 (768)
Q Consensus       132 rVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h-~~~---------------V~  195 (768)
                      ++|| .+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.. ...               +.
T Consensus       133 ~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (425)
T 1r5m_A          133 RLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV  210 (425)
T ss_dssp             EEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS
T ss_pred             EEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee
Confidence            9999 67888999999999999999999 999999999999999999999998887653 333               89


Q ss_pred             EEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEee
Q 004203          196 SIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT  270 (768)
Q Consensus       196 svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t  270 (768)
                      +++|+|++.+++.+.++.|++||+++.+..   ..+..|...|.+++|+|+++++++++.     +|+++.++....+..
T Consensus       211 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  287 (425)
T 1r5m_A          211 DVEWVDDDKFVIPGPKGAIFVYQITEKTPT---GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG  287 (425)
T ss_dssp             CCEEEETTEEEEECGGGCEEEEETTCSSCS---EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC
T ss_pred             EEEEcCCCEEEEEcCCCeEEEEEcCCCcee---eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC
Confidence            999999876444444666999999987643   356678999999999999998887764     777776554444432


Q ss_pred             cCCccc-------------CCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          271 SPGYWR-------------YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       271 ~~G~~~-------------~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                      +.+...             .....+.+|+..........   .....++....|+||++.|+....
T Consensus       288 ~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          288 HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALS---IVDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             CSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEE---ECTTCCEEEEEECTTSSEEEEEET
T ss_pred             CCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEec---ccCCccEEEEEEcCCCCEEEEEEC
Confidence            222110             01245666665544332222   223456778999999999887654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.87  E-value=9.9e-21  Score=197.85  Aligned_cols=211  Identities=16%  Similarity=0.213  Sum_probs=160.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCC-C-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           81 RRGLASWVEAESLHHLRPKY-C-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t-~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      +..|++++.|+.|++||..+ +     .+.+|...|++++|+|++++|++++.|+.|++||+++++.+. +.+|...|.+
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~  132 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKT  132 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEE
T ss_pred             ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEE
Confidence            58999999999999999986 2     466899999999999999999999999999999999998766 5679999999


Q ss_pred             EEE--ccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC----------------------------------------
Q 004203          155 VRF--HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR----------------------------------------  192 (768)
Q Consensus       155 Vaf--SP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~----------------------------------------  192 (768)
                      ++|  +| ++.+|++++.|+.|++||+++++.+..+....                                        
T Consensus       133 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  211 (368)
T 3mmy_A          133 IHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPL  211 (368)
T ss_dssp             EEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSC
T ss_pred             EEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccc
Confidence            999  88 88999999999999999999887655544322                                        


Q ss_pred             --CeEEEEEcCCCCE----EEEEECC-eEEEEEcCCCccccCCeEeecCCC------------CeEEEEEccCCCeEEEE
Q 004203          193 --PIASIAFHASGEL----LAVASGH-KLYIWRYNMREETSSPRIVLRTRR------------SLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       193 --~V~svafSPDG~~----LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~------------~V~sVaFSPDG~~LlaS  253 (768)
                        .+.++++.++...    +++++.+ .|++||++..........+..|..            .|.+++|+|++++|+++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  291 (368)
T 3mmy_A          212 KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV  291 (368)
T ss_dssp             SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE
T ss_pred             cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE
Confidence              3344455444433    7777754 599999988754222334555544            79999999999988877


Q ss_pred             Ee-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          254 AE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       254 ~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                      +.     +|++..+.   .+...                            .....++...+|+|||+.|+....+
T Consensus       292 ~~dg~i~iwd~~~~~---~~~~~----------------------------~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          292 GSDGRFSFWDKDART---KLKTS----------------------------EQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             ETTSCEEEEETTTTE---EEEEC----------------------------CCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             ccCCeEEEEECCCCc---EEEEe----------------------------cCCCCCceEEEECCCCCeEEEEecc
Confidence            64     44443221   11111                            1223456789999999999986543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.87  E-value=1.2e-19  Score=192.79  Aligned_cols=246  Identities=13%  Similarity=0.110  Sum_probs=184.8

Q ss_pred             EEEec-CCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEe
Q 004203           75 EAGRD-ARRGLASWVEAESLHHLRPKYCPL-----------------SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIID  135 (768)
Q Consensus        75 ~a~~d-~g~~LvSgs~DgsIrlWd~~t~~L-----------------~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWD  135 (768)
                      .+... ++..|++++.|+.|++||..+...                 .+|...|.+++|+| ++++|++++.|+.|++||
T Consensus        49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  128 (408)
T 4a11_B           49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD  128 (408)
T ss_dssp             EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence            33445 788999999999999999986521                 25999999999999 888999999999999999


Q ss_pred             CCCCeEEEEEecCCCCcEEEEEccC--CCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCC-EEEEEEC
Q 004203          136 CQTGSCLKVLHGHRRTPWVVRFHPL--NPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGE-LLAVASG  211 (768)
Q Consensus       136 l~tg~~l~~l~gH~g~V~sVafSP~--dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~-~LatgSd  211 (768)
                      +++++....+. +...+.++.|+|.  ++.++++++.|+.|++||+++++.+..+. |...|.+++|+|+++ +|++++.
T Consensus       129 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~  207 (408)
T 4a11_B          129 TNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA  207 (408)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcC
Confidence            99999888886 6778999999984  23399999999999999999998877765 888999999999998 5888885


Q ss_pred             C-eEEEEEcCCCcccc-------------CCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecC
Q 004203          212 H-KLYIWRYNMREETS-------------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSP  272 (768)
Q Consensus       212 d-~I~IWDl~t~~~~~-------------~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~  272 (768)
                      + .|++||+++.....             .......|...|.+++|+|+++++++++.     +|++..++.........
T Consensus       208 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  287 (408)
T 4a11_B          208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV  287 (408)
T ss_dssp             TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC
T ss_pred             CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc
Confidence            4 59999998765211             00111467889999999999998888765     77777654322211100


Q ss_pred             Cc-----------------c--cCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          273 GY-----------------W--RYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       273 G~-----------------~--~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                      ..                 .  ......+.+|+...+......   .....++....|+||++.|+....|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d  355 (408)
T 4a11_B          288 CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML---KGHYKTVDCCVFQSNFQELYSGSRD  355 (408)
T ss_dssp             CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE---CCCSSCEEEEEEETTTTEEEEEETT
T ss_pred             cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee---ccCCCeEEEEEEcCCCCEEEEECCC
Confidence            00                 0  001245677776655433332   3345577789999999999875443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.87  E-value=2.5e-20  Score=193.93  Aligned_cols=177  Identities=16%  Similarity=0.177  Sum_probs=153.9

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDG--KTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG--~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      ...+..+++++.|+.+++||....     .+.+|...|..++|++++  .++++++.|+.|++||+++++.+..+.+|.+
T Consensus       137 ~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~  216 (340)
T 4aow_A          137 SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG  216 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence            345678999999999999998754     467899999999999865  5788999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccC---
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS---  227 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~---  227 (768)
                      .|++++|+| ++++|++++.|++|++||+++++++..+.+...+.+++|+|++.+++.+.++.|++||+++......   
T Consensus       217 ~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~  295 (340)
T 4aow_A          217 YLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ  295 (340)
T ss_dssp             CEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred             cEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccc
Confidence            999999999 9999999999999999999999999999888999999999999988888888899999987654220   


Q ss_pred             ---CeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          228 ---PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       228 ---~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                         ......|...|++++|+|||++|++++.
T Consensus       296 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  326 (340)
T 4aow_A          296 EVISTSSKAEPPQCTSLAWSADGQTLFAGYT  326 (340)
T ss_dssp             C-------CCCCCEEEEEECTTSSEEEEEET
T ss_pred             cceeeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence               1123457889999999999998887664

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.87  E-value=9.3e-21  Score=204.21  Aligned_cols=163  Identities=11%  Similarity=0.106  Sum_probs=134.9

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      .++..|++++.|+.|++||..+.+    +..| ..+....|++++++|++++.|+.|++||+++++....+.+|.+.|.+
T Consensus        66 ~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  144 (420)
T 3vl1_A           66 KVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITK  144 (420)
T ss_dssp             EEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEE
T ss_pred             ecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEE
Confidence            467789999999999999998762    3344 44556678999999999999999999999999998888999999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEee
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL  232 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~  232 (768)
                      ++|+| ++++|++++.|++|++||+++++.+..+. |...|.+++|+|++++|++++.++ |++||+++++.........
T Consensus       145 ~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  223 (420)
T 3vl1_A          145 LKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE  223 (420)
T ss_dssp             EEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT
T ss_pred             EEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC
Confidence            99999 89999999999999999999998877764 889999999999999999999655 9999999887543111111


Q ss_pred             cCCCCeEEEEE
Q 004203          233 RTRRSLRAVHF  243 (768)
Q Consensus       233 ~h~~~V~sVaF  243 (768)
                      .+...|.++.|
T Consensus       224 ~~~~~v~~~~~  234 (420)
T 3vl1_A          224 NPHDGVNSIAL  234 (420)
T ss_dssp             BTTCCEEEEEE
T ss_pred             CCCCCccEEEE
Confidence            23445555554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.87  E-value=1.3e-21  Score=208.33  Aligned_cols=179  Identities=16%  Similarity=0.152  Sum_probs=144.4

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKV  144 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~-------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~  144 (768)
                      .+...++..|++++.|+.|++||..+..       +.+|...|.+++|+|++++|++++.|+.|++||+++++   ....
T Consensus        61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  140 (377)
T 3dwl_C           61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH  140 (377)
T ss_dssp             EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence            3445577899999999999999998753       66899999999999999999999999999999999887   4678


Q ss_pred             Eec-CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC------------------CcEEEEecCCCCeEEEEEcCCCCE
Q 004203          145 LHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST------------------AECIGSRDFYRPIASIAFHASGEL  205 (768)
Q Consensus       145 l~g-H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s------------------g~~i~~l~h~~~V~svafSPDG~~  205 (768)
                      +.+ |...|.+++|+| ++++|++++.|++|++||++.                  ++++..+.|...|.+++|+|++++
T Consensus       141 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             ECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSC
T ss_pred             eecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCE
Confidence            887 999999999999 999999999999999999952                  445555678889999999999999


Q ss_pred             EEEEECC-eEEEEEcCCCcccc-CCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          206 LAVASGH-KLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       206 LatgSdd-~I~IWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      |++++.+ .|++||+.+++... ....+..|...|.+++|+|+|++|++++
T Consensus       220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  270 (377)
T 3dwl_C          220 LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY  270 (377)
T ss_dssp             EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred             EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence            9999955 59999999887511 0235677889999999999999766553

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.87  E-value=1.7e-20  Score=203.75  Aligned_cols=182  Identities=20%  Similarity=0.288  Sum_probs=156.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      ++..+++++.|+.|++||+...     .+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+
T Consensus       185 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          185 NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA  264 (401)
T ss_dssp             ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred             CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence            3567888899999999998743     46789999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEe--CCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCe
Q 004203          155 VRFHPLNPTIIASGS--LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPR  229 (768)
Q Consensus       155 VafSP~dg~lLaSgS--~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS---dd~I~IWDl~t~~~~~~~~  229 (768)
                      ++|+|++..++++++  .|+.|++||+++++++..+.+...+.+++|+|++++|++++   ++.|++||+.++.... ..
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~-~~  343 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK-QV  343 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE-EE
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee-EE
Confidence            999996667888876  79999999999999999999999999999999999999965   4569999998865433 23


Q ss_pred             EeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203          230 IVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (768)
Q Consensus       230 ~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg  262 (768)
                      .+..|...|.+++|+|+|++|++++.     +|++..+
T Consensus       344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            45678999999999999998877654     5666544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.87  E-value=4.3e-20  Score=202.76  Aligned_cols=233  Identities=17%  Similarity=0.205  Sum_probs=178.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ++..+++++.|+.|++||..++    .+.+|.+.|.+++|++++ +|++++.|++|++||+++++++..+.+|.+.|.++
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l  209 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL  209 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEE
Confidence            4679999999999999999877    477999999999999988 99999999999999999999999999999999999


Q ss_pred             EEcc-CCCCEEEEEeCCCeEEEEECCCCcEE-----------------------EE-ecCCCCeEEEEEcCCCCEEEEEE
Q 004203          156 RFHP-LNPTIIASGSLDHEVRLWNASTAECI-----------------------GS-RDFYRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       156 afSP-~dg~lLaSgS~DgtVrLWDl~sg~~i-----------------------~~-l~h~~~V~svafSPDG~~LatgS  210 (768)
                      +|++ .++.++++++.|++|++||+++++..                       .. ..|...+.++  ++++++|++++
T Consensus       210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~  287 (464)
T 3v7d_B          210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS  287 (464)
T ss_dssp             EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE
T ss_pred             EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe
Confidence            9984 26789999999999999999987532                       12 2466666665  67899999999


Q ss_pred             CC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc--------
Q 004203          211 GH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR--------  276 (768)
Q Consensus       211 dd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~--------  276 (768)
                      .+ .|++||+++.+...   .+..|...|.+++|+|+++++++++.     +|+++.++....+..+.+...        
T Consensus       288 ~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  364 (464)
T 3v7d_B          288 YDNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF  364 (464)
T ss_dssp             TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSE
T ss_pred             CCCeEEEEECCCCcEEE---EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCE
Confidence            55 59999999887543   56678999999999999998887765     778776544433332222110        


Q ss_pred             ----CCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEe
Q 004203          277 ----YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (768)
Q Consensus       277 ----~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~  322 (768)
                          .....+.+|+...........    .........|++|++.++...
T Consensus       365 l~s~s~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          365 LVSAAADGSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEec
Confidence                123456667765533221111    122344678999999888754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.4e-21  Score=221.96  Aligned_cols=170  Identities=10%  Similarity=0.033  Sum_probs=144.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC---------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYC---------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKV  144 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~---------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~  144 (768)
                      +..|++++.|++|++||+...               .+.+|...|++++|+++ ..|++|+.||+|++||+++++ ....
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~  303 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFY  303 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEE
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEE
Confidence            578999999999999998754               34679999999999986 489999999999999999774 4567


Q ss_pred             EecCCCCcEEE--EEccCCC-CEEEEEeCCCeEEEEECCCCcEEEEe-cCC--CCeEEEEEcCCCCEEEEEECC-eEEEE
Q 004203          145 LHGHRRTPWVV--RFHPLNP-TIIASGSLDHEVRLWNASTAECIGSR-DFY--RPIASIAFHASGELLAVASGH-KLYIW  217 (768)
Q Consensus       145 l~gH~g~V~sV--afSP~dg-~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~--~~V~svafSPDG~~LatgSdd-~I~IW  217 (768)
                      +.+|.+.|++|  .|+| ++ .+|++++.|++|+|||++++++...+ .|.  ..|.+++|+|+++.|++++++ .|++|
T Consensus       304 ~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lw  382 (524)
T 2j04_B          304 DQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV  382 (524)
T ss_dssp             EECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEE
T ss_pred             eecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEE
Confidence            89999999999  5677 76 89999999999999999988765554 343  357899999999999988855 59999


Q ss_pred             EcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |+++....   ..+.+|...|++|+|+|+|++|++++.
T Consensus       383 d~~~~~~~---~~l~gH~~~V~sva~Sp~g~~l~Sgs~  417 (524)
T 2j04_B          383 PSRAAFAV---HPLVSRETTITAIGVSRLHPMVLAGSA  417 (524)
T ss_dssp             ETTCTTCC---EEEEECSSCEEEEECCSSCCBCEEEET
T ss_pred             ECcccccc---eeeecCCCceEEEEeCCCCCeEEEEEC
Confidence            99987643   356789999999999999998887765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.8e-20  Score=193.50  Aligned_cols=218  Identities=15%  Similarity=0.212  Sum_probs=170.1

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s  181 (768)
                      ++.+|.+.|++++|+||+++|++++.|+.|++||+.+++.+..+.+|.+.|.+++|+| ++++|++++.|+.|++||+.+
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~  105 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSN  105 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Confidence            3578999999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             CcEEEEecCCCCeEEEEEcCCCCEEEEEECC------eEEEEEcCCCcccc--------CCeEeecCCC--CeEEEEEcc
Q 004203          182 AECIGSRDFYRPIASIAFHASGELLAVASGH------KLYIWRYNMREETS--------SPRIVLRTRR--SLRAVHFHP  245 (768)
Q Consensus       182 g~~i~~l~h~~~V~svafSPDG~~LatgSdd------~I~IWDl~t~~~~~--------~~~~l~~h~~--~V~sVaFSP  245 (768)
                      ++.+..+.+...+.+++|+|++++|++++++      .|++||+.......        ....+..+..  .+.+++|+|
T Consensus       106 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (369)
T 3zwl_B          106 GQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST  185 (369)
T ss_dssp             CCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred             CcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence            9999998899999999999999999999865      59999998765322        1223344444  899999999


Q ss_pred             CCCeEEEEEe-----eCCcCC-CCcceeEeecCCccc--------------CCCCeEEEecCCCCCCCCcccccCCCCCC
Q 004203          246 HAAPLLLTAE-----VNDLDS-SESSLTLATSPGYWR--------------YPPPVICMAGAHSSSHPGLAEEVPLITPP  305 (768)
Q Consensus       246 DG~~LlaS~s-----vwdl~s-g~~~~~L~t~~G~~~--------------~p~~~V~l~d~~s~d~~~L~~~~~~~slp  305 (768)
                      +++++++++.     +|+++. ......+....+...              .....+.+|+...........    ...+
T Consensus       186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~  261 (369)
T 3zwl_B          186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCP  261 (369)
T ss_dssp             GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCC
Confidence            9998887654     777765 222223322221110              012456666655544333222    3445


Q ss_pred             ceEEEEecCCCEEEEEecC
Q 004203          306 FLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       306 il~psFSpDG~rIv~~~~d  324 (768)
                      +....|+++++.+++...+
T Consensus       262 ~~~~~~~~~~~~l~~~~~~  280 (369)
T 3zwl_B          262 LNTAVITPLKEFIILGGGQ  280 (369)
T ss_dssp             EEEEEECSSSSEEEEEECC
T ss_pred             ceeEEecCCCceEEEeecC
Confidence            6688999999999986543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.4e-20  Score=197.71  Aligned_cols=245  Identities=11%  Similarity=0.082  Sum_probs=184.3

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           74 FEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      ..+...++..|++++.|+.|++||....   .+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+..
T Consensus       113 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  192 (425)
T 1r5m_A          113 CLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKET  192 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence            3344567889999999999999995433   4778999999999999999999999999999999999999999988877


Q ss_pred             C---------------cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-e
Q 004203          151 T---------------PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-K  213 (768)
Q Consensus       151 ~---------------V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd-~  213 (768)
                      .               +.++.|+| + ..+++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++++.+ .
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  270 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT  270 (425)
T ss_dssp             -------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             CccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence            7               99999999 5 56889999999999999998887766 588899999999999999999955 5


Q ss_pred             EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc------------
Q 004203          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR------------  276 (768)
Q Consensus       214 I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~------------  276 (768)
                      |++||+++.+..   ..+..|...|.++.|+|++ .+++++.     +|+++.+.....+....+...            
T Consensus       271 i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  346 (425)
T 1r5m_A          271 LRIWHGGNGNSQ---NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYA  346 (425)
T ss_dssp             EEEECSSSBSCS---EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEE
T ss_pred             EEEEECCCCccc---eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEE
Confidence            999999887643   3566788999999999999 6666554     777766544433332221110            


Q ss_pred             --CCCCeEEEecCCCCCC-----------------CCcccccCCCCC--CceEEEEecCCCEEEEEecC
Q 004203          277 --YPPPVICMAGAHSSSH-----------------PGLAEEVPLITP--PFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       277 --~p~~~V~l~d~~s~d~-----------------~~L~~~~~~~sl--pil~psFSpDG~rIv~~~~d  324 (768)
                        .....+.+|+......                 ..+.........  ++....|++|++.|+....+
T Consensus       347 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  415 (425)
T 1r5m_A          347 VAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL  415 (425)
T ss_dssp             EEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred             EEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC
Confidence              0123455666543220                 002222233333  67789999999998876543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.4e-20  Score=201.83  Aligned_cols=220  Identities=16%  Similarity=0.197  Sum_probs=163.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC----CeEEEEEecCC
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT----GSCLKVLHGHR  149 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t----g~~l~~l~gH~  149 (768)
                      .+..+++++.|+.|++||..+..      ...|...|++++|+|++++|++++.|+.|++||+.+    .+.+..+.+|.
T Consensus        34 ~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~  113 (416)
T 2pm9_A           34 SGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS  113 (416)
T ss_dssp             SSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS
T ss_pred             CcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCc
Confidence            33344444899999999998652      246899999999999999999999999999999988    45788899999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc------EEEE----ecCCCCeEEEEEcCC-CCEEEEEECC-eEEEE
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE------CIGS----RDFYRPIASIAFHAS-GELLAVASGH-KLYIW  217 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~------~i~~----l~h~~~V~svafSPD-G~~LatgSdd-~I~IW  217 (768)
                      +.|.+++|+|+++++|++++.|+.|++||+++++      ....    ..|...|.+++|+|+ +.+|++++.+ .|++|
T Consensus       114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw  193 (416)
T 2pm9_A          114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW  193 (416)
T ss_dssp             SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE
T ss_pred             cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE
Confidence            9999999999448999999999999999999886      3332    357889999999999 6888988855 49999


Q ss_pred             EcCCCccccCCeEeecC------CCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCC
Q 004203          218 RYNMREETSSPRIVLRT------RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSS  291 (768)
Q Consensus       218 Dl~t~~~~~~~~~l~~h------~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d  291 (768)
                      |+++.+...   .+..+      ...|.+++|+|++..+++++..+...                   ..+.+|+.....
T Consensus       194 d~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~-------------------~~i~~~d~~~~~  251 (416)
T 2pm9_A          194 DLKAKKEVI---HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND-------------------PSILIWDLRNAN  251 (416)
T ss_dssp             ETTTTEEEE---EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS-------------------CCCCEEETTSTT
T ss_pred             ECCCCCcce---EEeccccccccCCceEEEEECCCCCCEEEEEECCCCC-------------------ceEEEEeCCCCC
Confidence            999876533   33333      78899999999986555554422100                   123334433221


Q ss_pred             -CCCcccccCCCCCCceEEEEec-CCCEEEEEec
Q 004203          292 -HPGLAEEVPLITPPFLRPSFVR-DDERISLQHT  323 (768)
Q Consensus       292 -~~~L~~~~~~~slpil~psFSp-DG~rIv~~~~  323 (768)
                       ......  .....++....|+| |++.|+....
T Consensus       252 ~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~  283 (416)
T 2pm9_A          252 TPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGR  283 (416)
T ss_dssp             SCSBCCC--SCCSSCEEEEEECSSCSSCEEEEES
T ss_pred             CCcEEee--cCccCceeEEEeCCCCCCeEEEEeC
Confidence             111111  02344677899999 7877776543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.6e-20  Score=195.90  Aligned_cols=181  Identities=13%  Similarity=0.159  Sum_probs=150.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCCe--EEEEEecCCC
Q 004203           81 RRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRR  150 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPD--G~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH~g  150 (768)
                      +..|++++.|+.|++||....      .+..|...|.+++|+|+  +++|++++.|+.|++||++++.  ....+.+|..
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence            789999999999999999876      35689999999999999  9999999999999999998873  4556788999


Q ss_pred             CcEEEEEccC------------CCCEEEEEeCCCeEEEEECCCCcEE----EEe-cCCCCeEEEEEcCC---CCEEEEEE
Q 004203          151 TPWVVRFHPL------------NPTIIASGSLDHEVRLWNASTAECI----GSR-DFYRPIASIAFHAS---GELLAVAS  210 (768)
Q Consensus       151 ~V~sVafSP~------------dg~lLaSgS~DgtVrLWDl~sg~~i----~~l-~h~~~V~svafSPD---G~~LatgS  210 (768)
                      .|.+++|+|.            ++.++++++.|+.|++||+++++..    ..+ .|...|.+++|+|+   +++|++++
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            9999999995            5899999999999999999876532    333 47889999999999   89999999


Q ss_pred             CC-eEEEEEcCCCccccCCe--EeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004203          211 GH-KLYIWRYNMREETSSPR--IVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (768)
Q Consensus       211 dd-~I~IWDl~t~~~~~~~~--~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~s  261 (768)
                      .+ .|++||+++........  ....|...|.+++|+|+|++|++++.     +|++..
T Consensus       229 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            55 59999999874321111  12237789999999999998888765     666653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.86  E-value=3.6e-20  Score=217.13  Aligned_cols=237  Identities=11%  Similarity=0.116  Sum_probs=184.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      .+...++..|++++.|+.|++||..++    .+.+|...|++++|+||+++|++++.|+.|++||+++++.+..+.+|.+
T Consensus        19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~   98 (814)
T 3mkq_A           19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD   98 (814)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC
Confidence            445567889999999999999999876    4678999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-cCCCCeEEEEEcC-CCCEEEEEECC-eEEEEEcCCCcccc
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPIASIAFHA-SGELLAVASGH-KLYIWRYNMREETS  226 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-~~i~~l-~h~~~V~svafSP-DG~~LatgSdd-~I~IWDl~t~~~~~  226 (768)
                      .|++++|+| ++.+|++++.|++|++||++++ .....+ .|...|.+++|+| ++..|++++.+ .|++||+.+.....
T Consensus        99 ~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~  177 (814)
T 3mkq_A           99 YIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF  177 (814)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred             CEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence            999999999 9999999999999999999987 444444 5888999999999 88899999854 59999998776422


Q ss_pred             CCeEeec-CCCCeEEEEEcc--CCCeEEEEEe-----eCCcCCCCcceeEeecCCccc---C-----------CCCeEEE
Q 004203          227 SPRIVLR-TRRSLRAVHFHP--HAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y-----------PPPVICM  284 (768)
Q Consensus       227 ~~~~l~~-h~~~V~sVaFSP--DG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~---~-----------p~~~V~l  284 (768)
                         .... +...+..++|+|  ++.++++++.     +|++..+.....+..+.+...   +           ....+.+
T Consensus       178 ---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~v  254 (814)
T 3mkq_A          178 ---TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI  254 (814)
T ss_dssp             ---EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             ---EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence               3433 458899999999  9998777664     777766544444432222111   0           1244566


Q ss_pred             ecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203          285 AGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (768)
Q Consensus       285 ~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI  318 (768)
                      |+..+.....   .......+++..+|+|+++.+
T Consensus       255 wd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~  285 (814)
T 3mkq_A          255 WNSSTYKVEK---TLNVGLERSWCIATHPTGRKN  285 (814)
T ss_dssp             EETTTCSEEE---EECCSSSSEEEEEECTTCGGG
T ss_pred             EECCCCcEEE---EeecCCCcEEEEEEccCCCce
Confidence            6655433222   222234467788999999854

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.86  E-value=7.8e-19  Score=180.84  Aligned_cols=234  Identities=15%  Similarity=0.172  Sum_probs=175.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203           83 GLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa  156 (768)
                      .|+. +.|++|++||..+++      +.+|...|++++|+|++++|++|+.|++|++||+++++++..+.+|...+.++.
T Consensus        38 ~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~  116 (318)
T 4ggc_A           38 VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS  116 (318)
T ss_dssp             EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee
Confidence            4444 459999999999873      457889999999999999999999999999999999999999999999887655


Q ss_pred             EccCCCCEEEEEeCCCeEEEEECCCCcEE-EE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC-CeEee
Q 004203          157 FHPLNPTIIASGSLDHEVRLWNASTAECI-GS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS-PRIVL  232 (768)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~sg~~i-~~-l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~-~~~l~  232 (768)
                      +   ++.++++++.++.+++|+...+... .. ..|...+..+.|++++++|++++.++ |++||+++++.... .....
T Consensus       117 ~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  193 (318)
T 4ggc_A          117 W---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT  193 (318)
T ss_dssp             E---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC
T ss_pred             c---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeec
Confidence            5   5689999999999999999876443 33 46889999999999999999999655 99999988764332 23445


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe--------eCCcCCCCcceeEeecCC-----------cc----cCCCCeEEEecCCC
Q 004203          233 RTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSSESSLTLATSPG-----------YW----RYPPPVICMAGAHS  289 (768)
Q Consensus       233 ~h~~~V~sVaFSPDG~~LlaS~s--------vwdl~sg~~~~~L~t~~G-----------~~----~~p~~~V~l~d~~s  289 (768)
                      .+...|..+.++|++..++..+.        +|+...............           ..    ......+.+|+..+
T Consensus       194 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~  273 (318)
T 4ggc_A          194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  273 (318)
T ss_dssp             CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence            57789999999999887765432        566554433222111110           00    01235677888766


Q ss_pred             CCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          290 SSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       290 ~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                      +.....   ..+...++...+|+|||+.|+....
T Consensus       274 ~~~~~~---l~gH~~~V~~l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          274 MAKVAE---LKGHTSRVLSLTMSPDGATVASAAA  304 (318)
T ss_dssp             CCEEEE---ECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             CcEEEE---EcCCCCCEEEEEEcCCCCEEEEEec
Confidence            544333   3345667889999999999987543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.86  E-value=1.7e-20  Score=203.10  Aligned_cols=224  Identities=13%  Similarity=0.078  Sum_probs=160.8

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCEEEEEe--CCCeEEEEeCCC
Q 004203           74 FEAGRDARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQT  138 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t~-------------~L~gH~~~VtslafSPDG~~LaSgS--~DgtVrVWDl~t  138 (768)
                      +....+....|++++.|+.+++|+....             ....+...+.+++|||||++|++++  .|++|+|||+++
T Consensus        87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~  166 (365)
T 4h5i_A           87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD  166 (365)
T ss_dssp             EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT
T ss_pred             EEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC
Confidence            3333444555666677889999987643             1234566799999999999987654  689999999999


Q ss_pred             CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE---ecCCCCeEEEEEcCCCCEEEEEEC-C--
Q 004203          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELLAVASG-H--  212 (768)
Q Consensus       139 g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~---l~h~~~V~svafSPDG~~LatgSd-d--  212 (768)
                      ++++..+. |.+.|++++|+| +++++++++.| .+++|+..+++.+..   ..|...|.+++|+|+++++++++. +  
T Consensus       167 ~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~  243 (365)
T 4h5i_A          167 LTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK  243 (365)
T ss_dssp             TEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC
T ss_pred             CcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc
Confidence            99988886 778899999999 99999999865 567777777766543   246778999999999999999883 3  


Q ss_pred             --eEEEEEcCCCcccc-CCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCC
Q 004203          213 --KLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHS  289 (768)
Q Consensus       213 --~I~IWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s  289 (768)
                        .+++||+....... ....+.+|...|++++|+|||++|++++...                       .|.+|+..+
T Consensus       244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~-----------------------~V~iwd~~~  300 (365)
T 4h5i_A          244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN-----------------------SIALVKLKD  300 (365)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS-----------------------CEEEEETTT
T ss_pred             eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC-----------------------EEEEEECCC
Confidence              27888887665422 1234567889999999999999887766411                       122233222


Q ss_pred             CCCCCcccccCCCCCCceEEEEecCCCEEEEEecCC
Q 004203          290 SSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH  325 (768)
Q Consensus       290 ~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~  325 (768)
                      +..  +.....+...++...+|||||++|+..-.|.
T Consensus       301 ~~~--~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          301 LSM--SKIFKQAHSFAITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             TEE--EEEETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred             CcE--EEEecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence            111  1111122344677899999999999865544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.86  E-value=2.8e-20  Score=191.29  Aligned_cols=123  Identities=18%  Similarity=0.221  Sum_probs=108.3

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----eEEEEEecCCCCcEEEEEccC-CCCEEEEEeCCCeEEE
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRFHPL-NPTIIASGSLDHEVRL  176 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg----~~l~~l~gH~g~V~sVafSP~-dg~lLaSgS~DgtVrL  176 (768)
                      .+.+|.+.|++++|+|++++|++++.|+.|++||+.++    +....+.+|...|.+++|+|. ++++|++++.|++|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            35789999999999999999999999999999999876    467788899999999999994 4899999999999999


Q ss_pred             EECCCC---------cEEEEe-cCCCCeEEEEEcCC--CCEEEEEECC-eEEEEEcCCCcc
Q 004203          177 WNASTA---------ECIGSR-DFYRPIASIAFHAS--GELLAVASGH-KLYIWRYNMREE  224 (768)
Q Consensus       177 WDl~sg---------~~i~~l-~h~~~V~svafSPD--G~~LatgSdd-~I~IWDl~t~~~  224 (768)
                      ||++++         +.+..+ .|...|.+++|+|+  +++|++++.+ .|++||+++.+.
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  146 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD  146 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence            999987         334444 58899999999999  9999999955 599999987653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.86  E-value=1.7e-20  Score=206.57  Aligned_cols=188  Identities=15%  Similarity=0.129  Sum_probs=144.8

Q ss_pred             CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEE--EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203          104 SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (768)
Q Consensus       104 ~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (768)
                      .+|...|++++|+| ++++||+|+.||+|+|||+.+++..  ..+.+|.+.|++++|+|.++++|++++.|++|+|||++
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            46888999999999 6789999999999999999887643  44568999999999999788999999999999999998


Q ss_pred             CCcEEEEec---CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-
Q 004203          181 TAECIGSRD---FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-  255 (768)
Q Consensus       181 sg~~i~~l~---h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-  255 (768)
                      ++.......   +...+.+++|+|++++|++++.+ .|++||++....    ..+..|...|.+++|+|++..++++++ 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~----~~~~~h~~~v~~v~~~p~~~~~~~s~s~  271 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL----WNLRMHKKKVTHVALNPCCDWFLATASV  271 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC----CCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee----EEEecccceEEeeeecCCCceEEEEecC
Confidence            765544433   33467899999999999999955 499999976432    246678999999999999987776654 


Q ss_pred             -----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          256 -----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       256 -----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                           +||++..+....                            .........++...+|+|||++|+....
T Consensus       272 d~~v~iwd~~~~~~~~~----------------------------~~~~~~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          272 DQTVKIWDLRQVRGKAS----------------------------FLYSLPHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             TSBCCEEETTTCCSSSC----------------------------CSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred             cceeeEEecccccccce----------------------------EEEeeeccccccceeECCCCCeeEEEcC
Confidence                 444443222111                            1111223345667899999999987543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.86  E-value=6.8e-20  Score=201.67  Aligned_cols=174  Identities=16%  Similarity=0.274  Sum_probs=146.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCC----------C----CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeE---
Q 004203           80 ARRGLASWVEAESLHHLRPKY----------C----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSC---  141 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t----------~----~L~gH~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~---  141 (768)
                      ++..|++++.++.|++|++..          .    .+.+|...|++++|+|+++ +|++++.||.|++||+.++..   
T Consensus       140 ~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  219 (430)
T 2xyi_A          140 NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR  219 (430)
T ss_dssp             EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG
T ss_pred             CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc
Confidence            367899999999999999875          2    3568999999999999988 999999999999999987432   


Q ss_pred             ----EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC---cEEEEe-cCCCCeEEEEEcCCCC-EEEEEEC-
Q 004203          142 ----LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---ECIGSR-DFYRPIASIAFHASGE-LLAVASG-  211 (768)
Q Consensus       142 ----l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg---~~i~~l-~h~~~V~svafSPDG~-~LatgSd-  211 (768)
                          ...+.+|...|.+++|+|+++.+|++++.|+.|++||++++   +.+..+ .|...|.+++|+|+++ +|++++. 
T Consensus       220 ~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d  299 (430)
T 2xyi_A          220 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD  299 (430)
T ss_dssp             EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC
Confidence                46778999999999999977889999999999999999987   444444 6889999999999998 6888885 


Q ss_pred             CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          212 HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       212 d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +.|++||+++...  ....+..|...|.+++|+|+++.+++++.
T Consensus       300 g~v~vwd~~~~~~--~~~~~~~h~~~v~~i~~sp~~~~~l~s~~  341 (430)
T 2xyi_A          300 KTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETILASSG  341 (430)
T ss_dssp             SEEEEEETTCTTS--CSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CeEEEEeCCCCCC--CeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence            4599999988543  23456678999999999999987666554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.86  E-value=5.6e-20  Score=196.20  Aligned_cols=177  Identities=18%  Similarity=0.122  Sum_probs=149.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC---------CCCC-----CCCeEEEEEC----CCCCE-EEEEeCCCeEEEEeCCC----
Q 004203           82 RGLASWVEAESLHHLRPKYCP---------LSPP-----PRSTIAAAFS----PDGKT-LASTHGDHTVKIIDCQT----  138 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~---------L~gH-----~~~VtslafS----PDG~~-LaSgS~DgtVrVWDl~t----  138 (768)
                      ..|++++.|+.|++|++....         +..|     ...|.+++|+    |++++ |++++.|+.|++||+++    
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence            899999999999999987653         4567     5999999999    99999 99999999999999998    


Q ss_pred             --CeEEE-----EEe-------cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec----C---CCCeEEE
Q 004203          139 --GSCLK-----VLH-------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----F---YRPIASI  197 (768)
Q Consensus       139 --g~~l~-----~l~-------gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~----h---~~~V~sv  197 (768)
                        ++.+.     .+.       .|...|.+++|+| ++ ++++++.|+.|++||+++++.+..+.    |   ...|.++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  239 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             cccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence              66655     774       4889999999999 77 99999999999999999999888765    5   8899999


Q ss_pred             EEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEeec-------------CCCCeEEEEEccCCCeEEEEEe-----
Q 004203          198 AFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLR-------------TRRSLRAVHFHPHAAPLLLTAE-----  255 (768)
Q Consensus       198 afSPDG~~LatgSdd----~I~IWDl~t~~~~~~~~~l~~-------------h~~~V~sVaFSPDG~~LlaS~s-----  255 (768)
                      +|+|++++|++++.+    .|++||+++.+...   .+..             |...|.+++|+|++++|++++.     
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  316 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIG---SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  316 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEE---EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCCCcccc---eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            999999999999865    59999999876543   4555             8899999999999998887764     


Q ss_pred             eCCcCCCC
Q 004203          256 VNDLDSSE  263 (768)
Q Consensus       256 vwdl~sg~  263 (768)
                      +|+++.++
T Consensus       317 iwd~~~~~  324 (397)
T 1sq9_A          317 FWDVKTKE  324 (397)
T ss_dssp             EEETTTTE
T ss_pred             EEEcCCCc
Confidence            67776543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.86  E-value=3.2e-19  Score=187.89  Aligned_cols=176  Identities=16%  Similarity=0.156  Sum_probs=150.6

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE----EE
Q 004203           74 FEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC----LK  143 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~----l~  143 (768)
                      ......++..|++++.|+.|++||....      .+..|...|.+++|+|++++|++++.|+.|++||+++++.    ..
T Consensus        57 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  136 (372)
T 1k8k_C           57 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH  136 (372)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence            3444567889999999999999999776      2478999999999999999999999999999999988762    33


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC------------------CCcEEEEe-cCCCCeEEEEEcCCCC
Q 004203          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS------------------TAECIGSR-DFYRPIASIAFHASGE  204 (768)
Q Consensus       144 ~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~------------------sg~~i~~l-~h~~~V~svafSPDG~  204 (768)
                      ...+|...|.+++|+| ++++|++++.|+.|++||++                  .++.+..+ .|...|.+++|+|+++
T Consensus       137 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (372)
T 1k8k_C          137 IKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS  215 (372)
T ss_dssp             ECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred             eecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence            3367899999999999 99999999999999999954                  56777776 5888999999999999


Q ss_pred             EEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          205 LLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       205 ~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      +|++++.+ .|++||+++++...   .+..|...|.+++|+|++++++++
T Consensus       216 ~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          216 RVAWVSHDSTVCLADADKKMAVA---TLASETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             EEEEEETTTEEEEEEGGGTTEEE---EEECSSCCEEEEEEEETTEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCceeE---EEccCCCCeEEEEEecCCCEEEEE
Confidence            99999955 59999999887543   566788899999999999966655

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=7.5e-21  Score=217.87  Aligned_cols=211  Identities=9%  Similarity=0.018  Sum_probs=152.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCC------CCEEEEEeCCCeEEEEeCCCCeE------
Q 004203           82 RGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPD------GKTLASTHGDHTVKIIDCQTGSC------  141 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~--------L~gH~~~VtslafSPD------G~~LaSgS~DgtVrVWDl~tg~~------  141 (768)
                      ..+++++.|++|++|+..+++        +..|.+.|.+++|+|+      +.+||+++.|++|++||+.+++.      
T Consensus       174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~  253 (524)
T 2j04_B          174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK  253 (524)
T ss_dssp             --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred             hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence            357888999999999987664        3467889999999997      57999999999999999987642      


Q ss_pred             -----EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEE-ecCCCCeEEE--EEcCCC-CEEEEEEC
Q 004203          142 -----LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-RDFYRPIASI--AFHASG-ELLAVASG  211 (768)
Q Consensus       142 -----l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~-l~h~~~V~sv--afSPDG-~~LatgSd  211 (768)
                           ...+.+|...|.+++|++ + ..|++|+.||+|++||+++++. ... ..|...|.++  +|+|++ .+|++++.
T Consensus       254 ~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~  331 (524)
T 2j04_B          254 MCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV  331 (524)
T ss_dssp             CCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred             eecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence                 247889999999999998 4 4899999999999999997643 333 4688999999  578888 89999995


Q ss_pred             C-eEEEEEcCCCccccCCeEeecCC--CCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCC
Q 004203          212 H-KLYIWRYNMREETSSPRIVLRTR--RSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAH  288 (768)
Q Consensus       212 d-~I~IWDl~t~~~~~~~~~l~~h~--~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~  288 (768)
                      | .|+|||+++.+...   .+.+|.  ..|.+++|+|+++.+++++...                       .+.+|+..
T Consensus       332 D~tvklWD~~~~~~~~---~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~-----------------------tv~lwd~~  385 (524)
T 2j04_B          332 DGYFYIFNPKDIATTK---TTVSRFRGSNLVPVVYCPQIYSYIYSDGAS-----------------------SLRAVPSR  385 (524)
T ss_dssp             TSEEEEECGGGHHHHC---EEEEECSCCSCCCEEEETTTTEEEEECSSS-----------------------EEEEEETT
T ss_pred             CCeEEEEECCCCCccc---ccccccccCcccceEeCCCcCeEEEeCCCC-----------------------cEEEEECc
Confidence            5 59999998876543   344453  3588999999999777654311                       12333322


Q ss_pred             CCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       289 s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                      .+.......   +...+++..+|||||+.|+..-.
T Consensus       386 ~~~~~~~l~---gH~~~V~sva~Sp~g~~l~Sgs~  417 (524)
T 2j04_B          386 AAFAVHPLV---SRETTITAIGVSRLHPMVLAGSA  417 (524)
T ss_dssp             CTTCCEEEE---ECSSCEEEEECCSSCCBCEEEET
T ss_pred             ccccceeee---cCCCceEEEEeCCCCCeEEEEEC
Confidence            222211111   12336678899999998886543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.86  E-value=7.1e-21  Score=201.00  Aligned_cols=176  Identities=18%  Similarity=0.215  Sum_probs=144.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCCeE---EEEEecC
Q 004203           80 ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSC---LKVLHGH  148 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPD--G~~LaSgS~DgtVrVWDl~tg~~---l~~l~gH  148 (768)
                      .+..|++++.|++|++||..++      .+.+|...|.+++|+|+  +.+|++++.|++|++||++++..   ...+.+|
T Consensus        70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred             CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence            3788999999999999999875      25689999999999997  88999999999999999987632   3456789


Q ss_pred             CCCcEEEEEccCC----------------CCEEEEEeCCCeEEEEECCCC---cEEEEe-cCCCCeEEEEEcCCC----C
Q 004203          149 RRTPWVVRFHPLN----------------PTIIASGSLDHEVRLWNASTA---ECIGSR-DFYRPIASIAFHASG----E  204 (768)
Q Consensus       149 ~g~V~sVafSP~d----------------g~lLaSgS~DgtVrLWDl~sg---~~i~~l-~h~~~V~svafSPDG----~  204 (768)
                      ...|.++.|+|+.                +++|++++.|++|+|||++.+   +++..+ .|...|.+++|+|++    +
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~  229 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS  229 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence            9999999999931                468999999999999999865   344444 588899999999987    7


Q ss_pred             EEEEEECC-eEEEEEcCCCcc-ccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          205 LLAVASGH-KLYIWRYNMREE-TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       205 ~LatgSdd-~I~IWDl~t~~~-~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +|++++.| .|++||+++... ......+..|...|.+++|+|+|++|++++.
T Consensus       230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred             eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence            89999955 599999986321 1112345568899999999999998888775

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.85  E-value=5.6e-20  Score=196.23  Aligned_cols=164  Identities=20%  Similarity=0.219  Sum_probs=144.0

Q ss_pred             cCCCE-EEEEeCCCeEEEEeCCC------CC---------C-------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 004203           79 DARRG-LASWVEAESLHHLRPKY------CP---------L-------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (768)
Q Consensus        79 d~g~~-LvSgs~DgsIrlWd~~t------~~---------L-------~gH~~~VtslafSPDG~~LaSgS~DgtVrVWD  135 (768)
                      .++.. |++++.|+.|++||+..      ..         +       ..|...|.+++|+|++ +|++++.|+.|++||
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE  213 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred             CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence            56777 99999999999999987      32         2       3488999999999999 999999999999999


Q ss_pred             CCCCeEEEEEec---C---CCCcEEEEEccCCCCEEEEEeCC---CeEEEEECCCCcEEEEec--------------CCC
Q 004203          136 CQTGSCLKVLHG---H---RRTPWVVRFHPLNPTIIASGSLD---HEVRLWNASTAECIGSRD--------------FYR  192 (768)
Q Consensus       136 l~tg~~l~~l~g---H---~g~V~sVafSP~dg~lLaSgS~D---gtVrLWDl~sg~~i~~l~--------------h~~  192 (768)
                      +++++.+..+..   |   ...|.+++|+| ++++|++++.|   +.|++||+++++.+..+.              |..
T Consensus       214 ~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          214 LSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             TTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred             CCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence            999999999999   9   99999999999 89999999999   999999999998887764              788


Q ss_pred             CeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEee------cC---------------CCCeEEEEEccCC
Q 004203          193 PIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVL------RT---------------RRSLRAVHFHPHA  247 (768)
Q Consensus       193 ~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~------~h---------------~~~V~sVaFSPDG  247 (768)
                      .|.+++|+|++++|++++.+ .|++||+++.+...   .+.      .|               ...|.+++|+|+|
T Consensus       293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE---EEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            99999999999999999955 59999999887544   444      56               8999999999998

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.85  E-value=9.5e-20  Score=212.66  Aligned_cols=179  Identities=19%  Similarity=0.199  Sum_probs=152.5

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDG--KTLASTHGDHTVKIIDCQTGSCLKVLH  146 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSPDG--~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (768)
                      +...++..|++++.|++|++||....       ...+|...|.+++|+|++  ..|++++.|++|++||+++++....+.
T Consensus       479 ~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~  558 (694)
T 3dm0_A          479 AFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA  558 (694)
T ss_dssp             EECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            34457788999999999999998643       235799999999999987  589999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETS  226 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~  226 (768)
                      +|.+.|++++|+| ++++|++++.|++|+|||+++++++..+.+...+.+++|+|++.+|+++++++|++||++++....
T Consensus       559 ~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~  637 (694)
T 3dm0_A          559 GHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVE  637 (694)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEE
T ss_pred             CCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChh
Confidence            9999999999999 999999999999999999999999988888889999999999999999999999999999876432


Q ss_pred             CCe----------------EeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          227 SPR----------------IVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       227 ~~~----------------~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...                ....+...+.+++|+|||++|++++.
T Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~  682 (694)
T 3dm0_A          638 DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT  682 (694)
T ss_dssp             EECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred             hhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence            100                00011224789999999998887764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.85  E-value=9.2e-20  Score=190.15  Aligned_cols=174  Identities=10%  Similarity=0.016  Sum_probs=147.9

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeC-CCCeEEEEEe
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDC-QTGSCLKVLH  146 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~~-------L~gH~~~VtslafSPDG~-~LaSgS~DgtVrVWDl-~tg~~l~~l~  146 (768)
                      +...++..|++++.|+.|++|+.....       +.+|...|++++|+|+++ +|++++.|+.|++||+ ++++. ..+.
T Consensus        18 ~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~   96 (342)
T 1yfq_A           18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALT   96 (342)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECB
T ss_pred             EEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eecc
Confidence            344567889999999999999987653       458999999999999999 9999999999999999 87764 7778


Q ss_pred             c--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC---------CcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeE
Q 004203          147 G--HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---------AECIGSRDFYRPIASIAFHASGELLAVAS-GHKL  214 (768)
Q Consensus       147 g--H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s---------g~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I  214 (768)
                      +  |...|.+++|+|  ++++++++.|+.|++||+++         ++++..+.+...+.+++|+|++  |++++ ++.|
T Consensus        97 ~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i  172 (342)
T 1yfq_A           97 NNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQV  172 (342)
T ss_dssp             SCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEE
T ss_pred             ccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeE
Confidence            8  999999999999  88999999999999999998         7777777889999999999988  66666 5569


Q ss_pred             EEEEcCC-CccccCCeEeecCCCCeEEEEEcc-CCCeEEEEEe
Q 004203          215 YIWRYNM-REETSSPRIVLRTRRSLRAVHFHP-HAAPLLLTAE  255 (768)
Q Consensus       215 ~IWDl~t-~~~~~~~~~l~~h~~~V~sVaFSP-DG~~LlaS~s  255 (768)
                      ++||+++ ..... ......+...|.+++|+| +++++++++.
T Consensus       173 ~i~d~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  214 (342)
T 1yfq_A          173 QWFRLPLCEDDNG-TIEESGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             EEEESSCCTTCCC-EEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             EEEECCccccccc-eeeecCCCCceeEEEECCCCCCEEEEEec
Confidence            9999988 54321 224456788999999999 9998877764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.85  E-value=2.5e-20  Score=195.10  Aligned_cols=191  Identities=17%  Similarity=0.235  Sum_probs=157.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEE---ecCCCCc
Q 004203           81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVL---HGHRRTP  152 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l---~gH~g~V  152 (768)
                      +..|++++.|+.|++||..+.    .+.+|...|.+++|+| ++++|++++.|+.|++||+++++.+..+   .+|...|
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  164 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV  164 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence            568999999999999999876    3668999999999999 9999999999999999999999999888   7899999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----------------------------CCCCeEEEEEcCCC
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----------------------------FYRPIASIAFHASG  203 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-----------------------------h~~~V~svafSPDG  203 (768)
                      .+++|+| ++++|++++.|+.|++||+++++....+.                             |...|.+++|+  +
T Consensus       165 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  241 (366)
T 3k26_A          165 LSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G  241 (366)
T ss_dssp             EEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred             eEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence            9999999 99999999999999999999876543322                             88899999999  7


Q ss_pred             CEEEEEEC-CeEEEEEcCCCccc-----------cCCeEeecCCCCeEEEEEccC--CCeEEEEEe-----eCCcCCCCc
Q 004203          204 ELLAVASG-HKLYIWRYNMREET-----------SSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE-----VNDLDSSES  264 (768)
Q Consensus       204 ~~LatgSd-d~I~IWDl~t~~~~-----------~~~~~l~~h~~~V~sVaFSPD--G~~LlaS~s-----vwdl~sg~~  264 (768)
                      ++|++++. +.|++||+++....           .....+..|...|.+++|+|+  +++|++++.     +|++..++.
T Consensus       242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred             CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence            78998885 55999999876531           112345567889999999999  998777764     788876654


Q ss_pred             ce-eEeecCCc
Q 004203          265 SL-TLATSPGY  274 (768)
Q Consensus       265 ~~-~L~t~~G~  274 (768)
                      .. .+....++
T Consensus       322 ~~~~~~~~~~~  332 (366)
T 3k26_A          322 HKAKCTTLTHH  332 (366)
T ss_dssp             GGCEEEEECCT
T ss_pred             ccccceEEccc
Confidence            32 33334444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.85  E-value=4.4e-20  Score=199.85  Aligned_cols=178  Identities=16%  Similarity=0.178  Sum_probs=142.2

Q ss_pred             EEEEecCCCEEE--EEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE--EEe
Q 004203           74 FEAGRDARRGLA--SWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLH  146 (768)
Q Consensus        74 ~~a~~d~g~~Lv--Sgs~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--~l~  146 (768)
                      .++...+++.++  +++.|++|++||..+.+   ...|...|.+++|+|||++|++++.| .+++|+..+++.+.  ...
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~  216 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDF  216 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCC
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecC
Confidence            345556677665  45579999999998873   22588899999999999999999865 56677767776553  345


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCC----eEEEEECCCCcEEE-----EecCCCCeEEEEEcCCCCEEEEEECCe-EEE
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWNASTAECIG-----SRDFYRPIASIAFHASGELLAVASGHK-LYI  216 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~Dg----tVrLWDl~sg~~i~-----~l~h~~~V~svafSPDG~~LatgSdd~-I~I  216 (768)
                      +|...|.+++|+| ++.++++++.|+    .+++||+.......     ...|...|.+++|+|||++||+++.|+ |+|
T Consensus       217 ~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~i  295 (365)
T 4h5i_A          217 DKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIAL  295 (365)
T ss_dssp             CTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence            7888999999999 999999999887    68999988765422     235788999999999999999999655 999


Q ss_pred             EEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ||+++++...  ....+|...|++|+|||||++|++++.
T Consensus       296 wd~~~~~~~~--~~~~gH~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          296 VKLKDLSMSK--IFKQAHSFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             EETTTTEEEE--EETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred             EECCCCcEEE--EecCcccCCEEEEEECCCCCEEEEEeC
Confidence            9999887533  123579999999999999998887664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.4e-19  Score=214.64  Aligned_cols=177  Identities=16%  Similarity=0.170  Sum_probs=150.8

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCCe--EEEEEec
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS--CLKVLHG  147 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPD--G~~LaSgS~DgtVrVWDl~tg~--~l~~l~g  147 (768)
                      ..++..|++++.|+.|++||....      .+.+|.+.|++++|+++  +++|++++.||.|++||+++++  .+..+.+
T Consensus        18 s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~   97 (753)
T 3jro_A           18 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV   97 (753)
T ss_dssp             CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred             CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccC
Confidence            356778999999999999998733      57899999999999998  9999999999999999999987  7788889


Q ss_pred             CCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCcE---EEEecCCCCeEEEEEcC-------------CCCEEEEE
Q 004203          148 HRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHA-------------SGELLAVA  209 (768)
Q Consensus       148 H~g~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~sg~~---i~~l~h~~~V~svafSP-------------DG~~Latg  209 (768)
                      |...|.+++|+| +  ++++++++.|++|++||++++..   .....|...|.+++|+|             ++++|+++
T Consensus        98 h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg  176 (753)
T 3jro_A           98 HSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG  176 (753)
T ss_dssp             CSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE
T ss_pred             CCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE
Confidence            999999999999 7  89999999999999999998733   33346889999999999             58899999


Q ss_pred             ECC-eEEEEEcCCCcccc-CCeEeecCCCCeEEEEEccC---CCeEEEEEe
Q 004203          210 SGH-KLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPH---AAPLLLTAE  255 (768)
Q Consensus       210 Sdd-~I~IWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPD---G~~LlaS~s  255 (768)
                      +.+ .|++||+++..... ....+..|...|.+++|+|+   ++++++++.
T Consensus       177 s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~  227 (753)
T 3jro_A          177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  227 (753)
T ss_dssp             ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred             ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence            955 59999998875321 12345678999999999999   787776654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.84  E-value=6e-20  Score=200.04  Aligned_cols=192  Identities=10%  Similarity=0.102  Sum_probs=151.3

Q ss_pred             EEEEec-CCCEEEEEeCCCeEEEEeCCC---C-----CCC-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC---CCe
Q 004203           74 FEAGRD-ARRGLASWVEAESLHHLRPKY---C-----PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---TGS  140 (768)
Q Consensus        74 ~~a~~d-~g~~LvSgs~DgsIrlWd~~t---~-----~L~-gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~---tg~  140 (768)
                      ..+... ++..|++++.|+.|++||...   .     .+. +|...|++++|+|++++|++++.|++|++||++   +++
T Consensus        68 ~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  147 (437)
T 3gre_A           68 SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES  147 (437)
T ss_dssp             EEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETT
T ss_pred             EEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCc
Confidence            344455 788999999999999999876   2     222 699999999999999999999999999999994   565


Q ss_pred             EEEEEec------------CCCCcEEEE--EccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCeEEEEEcCCC
Q 004203          141 CLKVLHG------------HRRTPWVVR--FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASG  203 (768)
Q Consensus       141 ~l~~l~g------------H~g~V~sVa--fSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---h~~~V~svafSPDG  203 (768)
                      ....+.+            +...+.++.  +++ ++.++++++.|+.|++||+++++++..+.   |...|.+++|+|++
T Consensus       148 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~  226 (437)
T 3gre_A          148 EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC  226 (437)
T ss_dssp             EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS
T ss_pred             eeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC
Confidence            5554443            344555555  556 78999999999999999999999888764   67899999999999


Q ss_pred             CEEEEEECCe-EEEEEcCCCccccCCeEe-ecCCCCeEEEEEcc----CCCeEEEEEe-----eCCcCCCCcceeEe
Q 004203          204 ELLAVASGHK-LYIWRYNMREETSSPRIV-LRTRRSLRAVHFHP----HAAPLLLTAE-----VNDLDSSESSLTLA  269 (768)
Q Consensus       204 ~~LatgSdd~-I~IWDl~t~~~~~~~~~l-~~h~~~V~sVaFSP----DG~~LlaS~s-----vwdl~sg~~~~~L~  269 (768)
                      ++|++++.++ |++||+++++...   .+ ..|...|.+++|+|    +++++++++.     +|+++.+.....+.
T Consensus       227 ~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (437)
T 3gre_A          227 CVLILGTTRGIIDIWDIRFNVLIR---SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFI  300 (437)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEE---EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEcCCCeEEEEEcCCccEEE---EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence            9999999655 9999999876533   23 26777999996664    5766666543     78887665544444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=7.3e-20  Score=194.54  Aligned_cols=177  Identities=12%  Similarity=0.058  Sum_probs=141.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC---------CCeEEEEEe-c
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---------TGSCLKVLH-G  147 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L~--gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~---------tg~~l~~l~-g  147 (768)
                      ++..+++++.|+.|++||+.+++..  -....|.++.|+|+   +++++.|++|++|+..         +++.+..+. +
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  123 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD  123 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence            5678999999999999999876421  11466788889988   9999999999999655         555555554 6


Q ss_pred             CCCCcEEEEEcc-CCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCc
Q 004203          148 HRRTPWVVRFHP-LNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMRE  223 (768)
Q Consensus       148 H~g~V~sVafSP-~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~  223 (768)
                      |.+.|.+++|+| .+++++++++.|++|++||++++++....  .+...+.+++|+|+|.+|++|+.+ .|++||+++++
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence            778899999998 25789999999999999999999987665  355689999999999999998855 59999999887


Q ss_pred             cccCCeEeec-CCCCeEEEEEccCCCeEEEEEe----eCCcCC
Q 004203          224 ETSSPRIVLR-TRRSLRAVHFHPHAAPLLLTAE----VNDLDS  261 (768)
Q Consensus       224 ~~~~~~~l~~-h~~~V~sVaFSPDG~~LlaS~s----vwdl~s  261 (768)
                      ..  ...+.. |...|++++|+|+|.+|++++.    +||++.
T Consensus       204 ~~--~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~  244 (343)
T 3lrv_A          204 QA--SSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRK  244 (343)
T ss_dssp             SC--CEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTS
T ss_pred             CC--ccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCC
Confidence            53  124555 8999999999999998877764    455543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=5e-20  Score=195.79  Aligned_cols=171  Identities=11%  Similarity=0.010  Sum_probs=138.0

Q ss_pred             EEEEeCCCeEEEEeCC---------CCC-----CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCeEEEEEe-
Q 004203           84 LASWVEAESLHHLRPK---------YCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLH-  146 (768)
Q Consensus        84 LvSgs~DgsIrlWd~~---------t~~-----L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l~-  146 (768)
                      +++++.|+.|++|+..         +.+     ..+|.+.|.+++|+|  ++++|++++.|++|++||+++++....+. 
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  167 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA  167 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence            8899999999999765         322     236678999999999  99999999999999999999999877664 


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE-EEe-c-CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-GSR-D-FYRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i-~~l-~-h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~  223 (768)
                      .|...|.+++|+| ++.+|++|+.|+.|++||+++++.. ..+ . |...|.+++|+|+|.+|++++++.|++||+++.+
T Consensus       168 ~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~  246 (343)
T 3lrv_A          168 KSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDV  246 (343)
T ss_dssp             CSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSST
T ss_pred             CCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCC
Confidence            4555899999999 9999999999999999999999876 444 3 7899999999999999999998899999999886


Q ss_pred             cccCCeEeecCCCCe--EEEEEccCCCeEEEEEe
Q 004203          224 ETSSPRIVLRTRRSL--RAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V--~sVaFSPDG~~LlaS~s  255 (768)
                      ..........+...+  .+++|+|+|+++++++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             TCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred             cceeecccccccccccceEEEECCCCCEEEEecC
Confidence            543222222232333  46999999998887553

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.84  E-value=8.9e-20  Score=190.60  Aligned_cols=172  Identities=10%  Similarity=0.144  Sum_probs=142.2

Q ss_pred             cCC-CEEEEEeC---CCeEEEEeCCCCCC-----CCCCCCeEEEEECCC---CCEEEEEeCCCeEEEEeCCCCe-EEEEE
Q 004203           79 DAR-RGLASWVE---AESLHHLRPKYCPL-----SPPPRSTIAAAFSPD---GKTLASTHGDHTVKIIDCQTGS-CLKVL  145 (768)
Q Consensus        79 d~g-~~LvSgs~---DgsIrlWd~~t~~L-----~gH~~~VtslafSPD---G~~LaSgS~DgtVrVWDl~tg~-~l~~l  145 (768)
                      .++ ..+++++.   |+.|++||..+++.     .+|...|.+++|+|+   |++|++++.|+.|++||+++++ .+..+
T Consensus        28 p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  107 (357)
T 3i2n_A           28 PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV  107 (357)
T ss_dssp             TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred             CCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE
Confidence            444 44556665   99999999987642     379999999999998   7999999999999999999988 88999


Q ss_pred             ecCCCCcEEEEE------ccCCCCEEEEEeCCCeEEEEECCCCc-EEEEec-C----CCCeEEEE----EcCCCCEEEEE
Q 004203          146 HGHRRTPWVVRF------HPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD-F----YRPIASIA----FHASGELLAVA  209 (768)
Q Consensus       146 ~gH~g~V~sVaf------SP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~l~-h----~~~V~sva----fSPDG~~Latg  209 (768)
                      .+|...|.++.|      +| ++++|++++.|+.|++||+++++ .+..+. +    ...+.+++    |+|++++|+++
T Consensus       108 ~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~  186 (357)
T 3i2n_A          108 KGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG  186 (357)
T ss_dssp             CCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE
T ss_pred             EecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE
Confidence            999999999965      67 88999999999999999999886 555543 2    33788888    78999999999


Q ss_pred             ECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEcc---CCCeEEEEEe
Q 004203          210 SGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP---HAAPLLLTAE  255 (768)
Q Consensus       210 Sdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSP---DG~~LlaS~s  255 (768)
                      +.+ .|++||+++.+..    ....|...|.+++|+|   ++.++++++.
T Consensus       187 ~~d~~i~i~d~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  232 (357)
T 3i2n_A          187 YDNGDIKLFDLRNMALR----WETNIKNGVCSLEFDRKDISMNKLVATSL  232 (357)
T ss_dssp             ETTSEEEEEETTTTEEE----EEEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred             ccCCeEEEEECccCcee----eecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence            964 5999999988652    3567889999999999   8998877764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.84  E-value=5.7e-19  Score=207.02  Aligned_cols=190  Identities=16%  Similarity=0.229  Sum_probs=163.0

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEec
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKVLHG  147 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg-~~l~~l~g  147 (768)
                      .......++..|++++.|+.|++||..++    .+.+|...|++++|+|++++|++++.|+.|++||++++ .....+.+
T Consensus        59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  138 (814)
T 3mkq_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG  138 (814)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence            33445567889999999999999999876    46789999999999999999999999999999999987 77788999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCCeEEEEEcC--CCCEEEEEECC-eEEEEEcCCC
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHA--SGELLAVASGH-KLYIWRYNMR  222 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~--h~~~V~svafSP--DG~~LatgSdd-~I~IWDl~t~  222 (768)
                      |...|.+++|+|.++..+++++.|++|++||+.+++....+.  +...+..++|+|  ++.+|++++.+ .|++||+.++
T Consensus       139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999778899999999999999999887766543  448899999999  99999999965 4999999887


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcc
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS  265 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~  265 (768)
                      +...   .+..|...|.+++|+|+++++++++.     +|++..+...
T Consensus       219 ~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~  263 (814)
T 3mkq_A          219 SCVA---TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE  263 (814)
T ss_dssp             EEEE---EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred             cEEE---EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            7533   56678899999999999998887764     7777655433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.84  E-value=1.2e-19  Score=192.89  Aligned_cols=215  Identities=16%  Similarity=0.185  Sum_probs=162.2

Q ss_pred             CeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEe-------------cCCCCc
Q 004203           91 ESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLH-------------GHRRTP  152 (768)
Q Consensus        91 gsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~-------------gH~g~V  152 (768)
                      ..+++|+.+..    .+.+|.+.|++++|+| ++++|++++.|+.|++||+++++....+.             +|...|
T Consensus        23 ~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           23 STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             HHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred             CcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence            44556665543    3678999999999999 99999999999999999999876554443             599999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCC---CEEEEEECC-eEEEEEcCCCccccCC
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG---ELLAVASGH-KLYIWRYNMREETSSP  228 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG---~~LatgSdd-~I~IWDl~t~~~~~~~  228 (768)
                      .+++|+|+++.+|++++.|+.|++||+.+++....+.+...+.++.|+|.+   .++++++.+ .|++||+++++..   
T Consensus       103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---  179 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS---  179 (408)
T ss_dssp             EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC---
T ss_pred             EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee---
Confidence            999999977889999999999999999999999999999999999999954   488888855 4999999887653   


Q ss_pred             eEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCC
Q 004203          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLI  302 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~  302 (768)
                      ..+..|...|.+++|+|+++++++++.      +|+++........  ...+             .......+.......
T Consensus       180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~  244 (408)
T 4a11_B          180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT--LDQH-------------NGKKSQAVESANTAH  244 (408)
T ss_dssp             EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE--CCTT-------------TTCSCCCTTTSSCSC
T ss_pred             eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc--cccc-------------ccccceeeccccccc
Confidence            366779999999999999997554443      6666543321111  1111             000111111122234


Q ss_pred             CCCceEEEEecCCCEEEEEec
Q 004203          303 TPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       303 slpil~psFSpDG~rIv~~~~  323 (768)
                      ..++....|+||++.|+....
T Consensus       245 ~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          245 NGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             SSCEEEEEECTTSSEEEEEET
T ss_pred             cCceeEEEEcCCCCEEEEecC
Confidence            456778999999999997544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.84  E-value=7.9e-19  Score=193.70  Aligned_cols=232  Identities=14%  Similarity=0.119  Sum_probs=172.0

Q ss_pred             CCEEEEEeCC------CeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeCCCCeEEEEEecC
Q 004203           81 RRGLASWVEA------ESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDH---TVKIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        81 g~~LvSgs~D------gsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~Dg---tVrVWDl~tg~~l~~l~gH  148 (768)
                      +.+++..+.+      +.|++||....   .+.+|...|.+++|+|||++|++++.|+   .|++||+++++.. .+..|
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~  221 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF  221 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence            4566666554      79999999754   3668999999999999999999999885   9999999999875 56678


Q ss_pred             CCCcEEEEEccCCCCEEE-EEeCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-C---eEEEEEcCC
Q 004203          149 RRTPWVVRFHPLNPTIIA-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIWRYNM  221 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLa-SgS~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d---~I~IWDl~t  221 (768)
                      .+.+.+++|+| |++.|+ +++.|+  .|++||+.+++......+...+.+++|+|||++|+++++ +   .|++||+.+
T Consensus       222 ~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          222 PRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             SSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            88899999999 888776 666665  499999999988666678889999999999999998885 3   388889887


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCC
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL  301 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~  301 (768)
                      ++.    ..+..+...+..++|+|||++|++++....                    ...+.+++..++....+...   
T Consensus       301 ~~~----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g--------------------~~~i~~~d~~~~~~~~l~~~---  353 (415)
T 2hqs_A          301 GAP----QRITWEGSQNQDADVSSDGKFMVMVSSNGG--------------------QQHIAKQDLATGGVQVLSST---  353 (415)
T ss_dssp             SCC----EECCCSSSEEEEEEECTTSSEEEEEEECSS--------------------CEEEEEEETTTCCEEECCCS---
T ss_pred             CCE----EEEecCCCcccCeEECCCCCEEEEEECcCC--------------------ceEEEEEECCCCCEEEecCC---
Confidence            653    234456678999999999998887764311                    01355555444333222111   


Q ss_pred             CCCCceEEEEecCCCEEEEEecCCCCCcceEEeccCCCceeee
Q 004203          302 ITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRL  344 (768)
Q Consensus       302 ~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl  344 (768)
                       . ....++|+|||+.|++...+.. ...++..+..+....+|
T Consensus       354 -~-~~~~~~~spdg~~l~~~s~~~~-~~~l~~~d~~g~~~~~l  393 (415)
T 2hqs_A          354 -F-LDETPSLAPNGTMVIYSSSQGM-GSVLNLVSTDGRFKARL  393 (415)
T ss_dssp             -S-SCEEEEECTTSSEEEEEEEETT-EEEEEEEETTSCCEEEC
T ss_pred             -C-CcCCeEEcCCCCEEEEEEcCCC-ccEEEEEECCCCcEEEe
Confidence             1 4568999999999998755442 23456666665554433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.83  E-value=3.4e-19  Score=190.67  Aligned_cols=144  Identities=13%  Similarity=0.118  Sum_probs=129.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ++..|++++.|+.|++||+....      ..+|...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|.+.|.
T Consensus       130 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~  208 (383)
T 3ei3_B          130 NTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVT  208 (383)
T ss_dssp             EEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEE
Confidence            56889999999999999998652      2355688999999999999999999999999999 5788899999999999


Q ss_pred             EEEEccCCCC-EEEEEeCCCeEEEEECCC----CcEEEEecCCCCeEEEEEcC-CCCEEEEEEC-CeEEEEEcCCCccc
Q 004203          154 VVRFHPLNPT-IIASGSLDHEVRLWNAST----AECIGSRDFYRPIASIAFHA-SGELLAVASG-HKLYIWRYNMREET  225 (768)
Q Consensus       154 sVafSP~dg~-lLaSgS~DgtVrLWDl~s----g~~i~~l~h~~~V~svafSP-DG~~LatgSd-d~I~IWDl~t~~~~  225 (768)
                      +++|+| +++ ++++++.|++|++||+++    ++++..+.|...|.+++|+| ++++|++++. +.|++||+++.+..
T Consensus       209 ~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~  286 (383)
T 3ei3_B          209 HAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP  286 (383)
T ss_dssp             EEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred             EEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            999999 666 999999999999999998    67788888999999999999 9999999995 45999999887653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2.3e-18  Score=176.47  Aligned_cols=170  Identities=13%  Similarity=0.161  Sum_probs=144.2

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (768)
                      .....++..+++++.|+.|++|++...       .+.+|...|.++.|  ++++|++++.|+.|++||  .++....+..
T Consensus        65 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~  140 (313)
T 3odt_A           65 VCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA  140 (313)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred             EEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc
Confidence            445567889999999999999998753       36689999999999  688999999999999999  6788899999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcc
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREE  224 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~  224 (768)
                      |...+.++.|+|.+++++++++.|+.|++||.  ++....+.  +...+.+++|+|++. |++++ ++.|++||+++++.
T Consensus       141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~  217 (313)
T 3odt_A          141 HNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV  217 (313)
T ss_dssp             CSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred             CCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence            99999999999878999999999999999994  44444443  888999999999999 66777 45599999998875


Q ss_pred             ccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..   .+..|...|.+++|+|++. +++++.
T Consensus       218 ~~---~~~~~~~~i~~~~~~~~~~-l~~~~~  244 (313)
T 3odt_A          218 LR---TYEGHESFVYCIKLLPNGD-IVSCGE  244 (313)
T ss_dssp             EE---EEECCSSCEEEEEECTTSC-EEEEET
T ss_pred             hh---hhhcCCceEEEEEEecCCC-EEEEec
Confidence            43   5667899999999999995 666553

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.83  E-value=1.1e-19  Score=197.20  Aligned_cols=233  Identities=12%  Similarity=0.160  Sum_probs=167.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC--------------------------------------------CCCCCCCeEEEEECC
Q 004203           82 RGLASWVEAESLHHLRPKYCP--------------------------------------------LSPPPRSTIAAAFSP  117 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~--------------------------------------------L~gH~~~VtslafSP  117 (768)
                      ..+++++.|+.|++|++....                                            +.+|...|++++|+|
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            689999999999999987521                                            368999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-CeEEEE-------EecCCCCcEEEEEccCCC-CEEEEEeCCCeEEEEECCCCcE----
Q 004203          118 DGKTLASTHGDHTVKIIDCQT-GSCLKV-------LHGHRRTPWVVRFHPLNP-TIIASGSLDHEVRLWNASTAEC----  184 (768)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~t-g~~l~~-------l~gH~g~V~sVafSP~dg-~lLaSgS~DgtVrLWDl~sg~~----  184 (768)
                      ++++|+++ .|+.|++||+++ ++.+..       +.+|...|.+++|+| ++ ++|++++.|++|++||+++++.    
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            99999998 899999999984 444442       568999999999999 66 9999999999999999999886    


Q ss_pred             EEEec-CCC------------CeEEEEEcCCCCEEEEEECCeEEEEEcCC-CccccCCeEeecCCC--------------
Q 004203          185 IGSRD-FYR------------PIASIAFHASGELLAVASGHKLYIWRYNM-REETSSPRIVLRTRR--------------  236 (768)
Q Consensus       185 i~~l~-h~~------------~V~svafSPDG~~LatgSdd~I~IWDl~t-~~~~~~~~~l~~h~~--------------  236 (768)
                      ...+. +..            .|.+++|+|+|++|++++++.|++||+++ ++...   .+..|..              
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVE---TYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSC---CEESCGGGTTTHHHHHHTSGG
T ss_pred             eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccc---eeecccccccccccccccccc
Confidence            55554 443            89999999999999999996699999987 44322   3444432              


Q ss_pred             -CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc----CCCCeEEEecCCCCCCCCcccccCCCCCCc
Q 004203          237 -SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR----YPPPVICMAGAHSSSHPGLAEEVPLITPPF  306 (768)
Q Consensus       237 -~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~----~p~~~V~l~d~~s~d~~~L~~~~~~~slpi  306 (768)
                       .+..++|+|++++|++++.     +|++..++.. .+........    .+...+....  ......+.........++
T Consensus       343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i  419 (447)
T 3dw8_B          343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASG--KRKKDEISVDSLDFNKKI  419 (447)
T ss_dssp             GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSS--CCCTTCEEGGGCCTTSCC
T ss_pred             ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccC--CcccccccccccccCCce
Confidence             1334999999998877654     7888765432 2222211110    1111111111  111122222233445567


Q ss_pred             eEEEEecCCCEEEEEe
Q 004203          307 LRPSFVRDDERISLQH  322 (768)
Q Consensus       307 l~psFSpDG~rIv~~~  322 (768)
                      +..+|+|++..|++..
T Consensus       420 ~~~~~~p~~~~la~~~  435 (447)
T 3dw8_B          420 LHTAWHPKENIIAVAT  435 (447)
T ss_dssp             CEEEECSSSSEEEEEC
T ss_pred             eEEEECCCCCEEEEEe
Confidence            7899999999998753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.83  E-value=2.5e-18  Score=188.58  Aligned_cols=230  Identities=13%  Similarity=0.219  Sum_probs=177.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ++..|++++.|+.|++||..++    .+.+|...|.+++|+  +++|++++.|++|++||+++++.+..+.+|...|.++
T Consensus       128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  205 (445)
T 2ovr_B          128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM  205 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEE
Confidence            4789999999999999999876    478999999999998  6799999999999999999999999999999999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeec
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      .|++   +.+++++.|++|++||+++++.+..+ .|...|.+++|  ++++|++++.+ .|++||+++++...   .+..
T Consensus       206 ~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~  277 (445)
T 2ovr_B          206 HLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH---TLQG  277 (445)
T ss_dssp             EEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE---EECC
T ss_pred             EecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE---EecC
Confidence            9964   78999999999999999999988776 58889999999  78889999855 49999999887543   5667


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc------------CCCCeEEEecCCCCCCCCcc
Q 004203          234 TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR------------YPPPVICMAGAHSSSHPGLA  296 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~------------~p~~~V~l~d~~s~d~~~L~  296 (768)
                      |...|.++.|  ++.++++++.     +|+++.++....+..+.+...            .....+.+|+..++......
T Consensus       278 ~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  355 (445)
T 2ovr_B          278 HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL  355 (445)
T ss_dssp             CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            8899999999  7887777764     778776654443332221110            12345677776555443333


Q ss_pred             cccCCCCCCceEEEEecCCCEEEEEec
Q 004203          297 EEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       297 ~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                      ........++....|  +++.|+....
T Consensus       356 ~~~~~~~~~v~~~~~--~~~~l~s~~~  380 (445)
T 2ovr_B          356 QGPNKHQSAVTCLQF--NKNFVITSSD  380 (445)
T ss_dssp             CSTTSCSSCEEEEEE--CSSEEEEEET
T ss_pred             ccCCCCCCCEEEEEE--CCCEEEEEeC
Confidence            332233445555555  4566666443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.83  E-value=9.4e-20  Score=209.68  Aligned_cols=231  Identities=10%  Similarity=0.013  Sum_probs=169.7

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC--CCCCCCC-----CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----
Q 004203           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--PLSPPPR-----STIAAAFSPDGKTLASTHGDHTVKIIDCQTGS----  140 (768)
Q Consensus        72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~--~L~gH~~-----~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~----  140 (768)
                      ....+.+.++..|++++.|+.|++||.+..  .+. |..     .|.+++|||||++||+|+.||+|+|||+++++    
T Consensus        88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~  166 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP  166 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence            455666789999999999999999996543  345 554     59999999999999999999999999999885    


Q ss_pred             ---EEEEE----ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE---EEe--cCCCCeEEEEEcCCCCEEEE
Q 004203          141 ---CLKVL----HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI---GSR--DFYRPIASIAFHASGELLAV  208 (768)
Q Consensus       141 ---~l~~l----~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i---~~l--~h~~~V~svafSPDG~~Lat  208 (768)
                         .+..+    .+|...|.+++|+| ++  +++++.|++|++||+.+++..   .++  .|...|.+++|+  |+.|++
T Consensus       167 ~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LAS  241 (588)
T 2j04_A          167 EFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVL  241 (588)
T ss_dssp             CCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEE
T ss_pred             cceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEE
Confidence               35776    67778999999999 77  888899999999999987742   344  477899999999  689999


Q ss_pred             EECCeEEEEEcCCCccccCCeEeecCCCCeEEEEE--ccCCCeEEEEEe----eCCcCCCCcceeEeecCCcc-cCCCCe
Q 004203          209 ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHF--HPHAAPLLLTAE----VNDLDSSESSLTLATSPGYW-RYPPPV  281 (768)
Q Consensus       209 gSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaF--SPDG~~LlaS~s----vwdl~sg~~~~~L~t~~G~~-~~p~~~  281 (768)
                      +++++|++||+.++....   ...+|...|..+.|  +||+..++++.+    +|..+.    .. ...++.. ......
T Consensus       242 a~~~tIkLWd~~~~~~~~---~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d~----~~-~spd~~l~a~~d~~  313 (588)
T 2j04_A          242 TCPGYVHKIDLKNYSISS---LKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLEDE----LH-VTADNIIAPYLEKK  313 (588)
T ss_dssp             ECSSEEEEEETTTTEEEE---EECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESSS----EE-EECCCSSHHHHHHH
T ss_pred             EeCCeEEEEECCCCeEEE---EEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeecc----EE-ECCCceEEEEcCCE
Confidence            998889999998876522   34489999999999  999987666542    444431    11 1111110 001233


Q ss_pred             EEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203          282 ICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (768)
Q Consensus       282 V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~  321 (768)
                      +.+|+..... ....   .. ...+...+|||||+.++..
T Consensus       314 v~lW~~~g~~-l~~~---~~-~~~I~~va~SPdG~~lA~~  348 (588)
T 2j04_A          314 FKKWSTIWNE-FNNY---ET-TLVIHGISLSPDGYSIAIV  348 (588)
T ss_dssp             HHHTTTTTTS-SSSS---CC-EEEEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCCc-eeee---cc-ceEEEEEEECCCCCEEEEE
Confidence            4555533222 1111   11 2234579999999999873

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.83  E-value=1.7e-18  Score=189.44  Aligned_cols=156  Identities=21%  Similarity=0.388  Sum_probs=134.9

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----EEEEEecCCCCcEEEEEccCCCCEEEEE--eCCCeEEE
Q 004203          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIASG--SLDHEVRL  176 (768)
Q Consensus       103 L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~----~l~~l~gH~g~V~sVafSP~dg~lLaSg--S~DgtVrL  176 (768)
                      +.+|...+..+.|+|++++|++++.|+.|++||..+++    .+..+..|.+.|.+++|+|.+..+++++  +.|++|++
T Consensus       226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i  305 (420)
T 4gga_A          226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  305 (420)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred             ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence            35788889999999999999999999999999998765    3567788999999999999777887764  57999999


Q ss_pred             EECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       177 WDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS---dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ||+.++++...+.+...+.++.|+|+++.|++++   ++.|+|||+.+++...   .+.+|...|++++|+|||++|+++
T Consensus       306 wd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~---~l~gH~~~V~~l~~spdg~~l~S~  382 (420)
T 4gga_A          306 WNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA---ELKGHTSRVLSLTMSPDGATVASA  382 (420)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSCEEEE
T ss_pred             EeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCCEEEEE
Confidence            9999999999998889999999999999998876   3459999999887644   677899999999999999988887


Q ss_pred             Ee-----eCCcCC
Q 004203          254 AE-----VNDLDS  261 (768)
Q Consensus       254 ~s-----vwdl~s  261 (768)
                      +.     +|++..
T Consensus       383 s~D~tvriWdv~~  395 (420)
T 4gga_A          383 AADETLRLWRCFE  395 (420)
T ss_dssp             ETTTEEEEECCSC
T ss_pred             ecCCeEEEEECCC
Confidence            65     666653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2e-18  Score=190.52  Aligned_cols=160  Identities=11%  Similarity=0.116  Sum_probs=135.0

Q ss_pred             CCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCC--CCeEEEEEe--cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 004203          105 PPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQ--TGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (768)
Q Consensus       105 gH~~~VtslafSPDG~~L-aSgS~DgtVrVWDl~--tg~~l~~l~--gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (768)
                      +|...|++++|+|||++| ++++.|+.|++||+.  +++.+..+.  .|...|.+++|+| ++++|++++.|+.|++||+
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEec
Confidence            456689999999999996 899999999999999  888888886  5678899999999 9999999999999999999


Q ss_pred             CCCcEEE----E-ecCCCCeEEEEEcCC---CCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203          180 STAECIG----S-RDFYRPIASIAFHAS---GELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       180 ~sg~~i~----~-l~h~~~V~svafSPD---G~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L  250 (768)
                      .+++...    . ..|...|.+++|+|+   +++|++++.+ .|++||++++....  ....+|...|.+++|+ ++++|
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~h~~~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD--KWLFGHKHFVSSICCG-KDYLL  255 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE--EECCCCSSCEEEEEEC-STTEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee--eeecCCCCceEEEEEC-CCCEE
Confidence            9877553    3 458899999999999   9999999965 59999998876533  1245789999999999 99988


Q ss_pred             EEEEe-----eCCcCCCCcceeE
Q 004203          251 LLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       251 laS~s-----vwdl~sg~~~~~L  268 (768)
                      ++++.     +|++..++....+
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~~  278 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLSTF  278 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEeeee
Confidence            87765     8888877654444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.82  E-value=6.4e-19  Score=183.76  Aligned_cols=176  Identities=10%  Similarity=0.048  Sum_probs=144.8

Q ss_pred             EEEecCCC-EEEEEeCCCeEEEEeC-CCC---CCCC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---------
Q 004203           75 EAGRDARR-GLASWVEAESLHHLRP-KYC---PLSP--PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT---------  138 (768)
Q Consensus        75 ~a~~d~g~-~LvSgs~DgsIrlWd~-~t~---~L~g--H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t---------  138 (768)
                      .....++. .|++++.|+.|++||+ ...   .+.+  |...|.+++|+| +++|++++.|+.|++||+++         
T Consensus        62 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             EEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             EEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence            33444677 8999999999999999 766   4677  999999999999 99999999999999999987         


Q ss_pred             CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEE---EEecCCCCeEEEEEcC-CCCEEEEEECC-
Q 004203          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECI---GSRDFYRPIASIAFHA-SGELLAVASGH-  212 (768)
Q Consensus       139 g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s-g~~i---~~l~h~~~V~svafSP-DG~~LatgSdd-  212 (768)
                      ++++..+. |...|.+++|+| ++  +++++.|+.|++||+++ +...   ....+...+.+++|+| ++++|++++.+ 
T Consensus       141 ~~~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  216 (342)
T 1yfq_A          141 NLNSNNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             ESCSSSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             CCeeeEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence            76666666 889999999999 54  99999999999999998 5532   3345788999999999 99999999965 


Q ss_pred             eEEEEEcCCC--cc-ccCCeEeecCCC---------CeEEEEEccCCCeEEEEEe
Q 004203          213 KLYIWRYNMR--EE-TSSPRIVLRTRR---------SLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       213 ~I~IWDl~t~--~~-~~~~~~l~~h~~---------~V~sVaFSPDG~~LlaS~s  255 (768)
                      .|++||++..  .. ......+..|..         .|.+++|+|++++|++++.
T Consensus       217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  271 (342)
T 1yfq_A          217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS  271 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET
T ss_pred             cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC
Confidence            5999999876  10 012334555644         9999999999998887764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.82  E-value=3.2e-18  Score=187.76  Aligned_cols=244  Identities=14%  Similarity=0.163  Sum_probs=186.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa  156 (768)
                      +..+++++.|+.|++||..++    .+.+|...|.++.|+  +++|++++.|++|++||+++++.+..+.+|...|.++.
T Consensus       169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  246 (445)
T 2ovr_B          169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ  246 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEE
Confidence            568999999999999999876    477999999999995  67899999999999999999999999999999999999


Q ss_pred             EccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecC
Q 004203          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT  234 (768)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h  234 (768)
                      |   +++++++++.|+.|++||+++++++..+. |...|.+++|  ++.+|++++. +.|++||+++++...   .+..|
T Consensus       247 ~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~  318 (445)
T 2ovr_B          247 Y---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH---TLTGH  318 (445)
T ss_dssp             E---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE---EECCC
T ss_pred             E---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE---EEcCC
Confidence            8   56889999999999999999999888875 7889999999  7899999995 459999999887543   56678


Q ss_pred             CCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc---------------CCCCeEEEecCCCCCCCC
Q 004203          235 RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---------------YPPPVICMAGAHSSSHPG  294 (768)
Q Consensus       235 ~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~---------------~p~~~V~l~d~~s~d~~~  294 (768)
                      ...+.++.++  ++++++++.     +|+++.+.....+....++..               .....+.+|+..++....
T Consensus       319 ~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          319 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR  396 (445)
T ss_dssp             CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence            8889888874  566666654     778776655444443222211               123567778766655433


Q ss_pred             ccc--ccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEecc
Q 004203          295 LAE--EVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSL  336 (768)
Q Consensus       295 L~~--~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~  336 (768)
                      ...  .......+++..+|+||+..+++...+........+.+.
T Consensus       397 ~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df  440 (445)
T 2ovr_B          397 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  440 (445)
T ss_dssp             EEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             eeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence            321  112334467789999999888886555443333444443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.82  E-value=3.3e-18  Score=187.74  Aligned_cols=178  Identities=16%  Similarity=0.293  Sum_probs=151.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      -++..+++++.|+.|++||..++    .+.+|...|.+++|  ++++|++|+.||+|++||+++++.+..+.+|...|.+
T Consensus       141 ~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  218 (435)
T 1p22_A          141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH  218 (435)
T ss_dssp             CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE
T ss_pred             ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEE
Confidence            47889999999999999999876    47799999999999  7899999999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEE---EE-ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCe
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECI---GS-RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPR  229 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i---~~-l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~  229 (768)
                      +.|++   +.+++++.|++|++||+++++..   .. ..|...|.+++|  ++++|++++.+ .|++||+++++...   
T Consensus       219 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~---  290 (435)
T 1p22_A          219 LRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR---  290 (435)
T ss_dssp             EECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE---
T ss_pred             EEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE---
Confidence            99975   59999999999999999987754   22 358889999999  78899999955 59999999887544   


Q ss_pred             EeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203          230 IVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       230 ~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L  268 (768)
                      .+..|...|.++.|+  ++++++++.     +||++.+.....+
T Consensus       291 ~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~  332 (435)
T 1p22_A          291 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL  332 (435)
T ss_dssp             EEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            567789999999994  566776654     7788766544444

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.81  E-value=5.5e-19  Score=192.45  Aligned_cols=194  Identities=13%  Similarity=0.116  Sum_probs=155.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCC---CCC--------------CCC--CCCCeEEEE--ECCCCCEEEEEeCCCeEEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPK---YCP--------------LSP--PPRSTIAAA--FSPDGKTLASTHGDHTVKI  133 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~---t~~--------------L~g--H~~~Vtsla--fSPDG~~LaSgS~DgtVrV  133 (768)
                      .+...++..|++++.|+.|++||+.   .++              +..  +...+.++.  +++++++|++++.|+.|++
T Consensus       117 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  196 (437)
T 3gre_A          117 ITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVII  196 (437)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEE
T ss_pred             EEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            3445678899999999999999984   221              112  667788887  6689999999999999999


Q ss_pred             EeCCCCeEEEEEec--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCeEEEEEcC----CCCE
Q 004203          134 IDCQTGSCLKVLHG--HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHA----SGEL  205 (768)
Q Consensus       134 WDl~tg~~l~~l~g--H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--~h~~~V~svafSP----DG~~  205 (768)
                      ||+++++++..+.+  |.+.|.+++|+| ++++|++++.|++|++||+++++++..+  .+...|.+++|+|    ++.+
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~  275 (437)
T 3gre_A          197 FDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI  275 (437)
T ss_dssp             EETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred             EeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE
Confidence            99999999999998  889999999999 8999999999999999999999998876  5777899996664    6779


Q ss_pred             EEEEECCe-EEEEEcCCCccccCCe---------------------Eeec--CCCCeEEEEEccCCCeEEEEEe-----e
Q 004203          206 LAVASGHK-LYIWRYNMREETSSPR---------------------IVLR--TRRSLRAVHFHPHAAPLLLTAE-----V  256 (768)
Q Consensus       206 LatgSdd~-I~IWDl~t~~~~~~~~---------------------~l~~--h~~~V~sVaFSPDG~~LlaS~s-----v  256 (768)
                      |++++.++ |++||+++++......                     .+.+  |...|++++|+ ++++|++++.     +
T Consensus       276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~  354 (437)
T 3gre_A          276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM  354 (437)
T ss_dssp             EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred             EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence            99998666 9999999876432000                     0111  56678999999 7776666654     8


Q ss_pred             CCcCCCCcceeEee
Q 004203          257 NDLDSSESSLTLAT  270 (768)
Q Consensus       257 wdl~sg~~~~~L~t  270 (768)
                      |++..++....+..
T Consensus       355 wd~~~~~~~~~~~~  368 (437)
T 3gre_A          355 FSLNELSSSKAVIS  368 (437)
T ss_dssp             EETTCGGGCEEEEC
T ss_pred             EECCCcccceEEec
Confidence            88887766655554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.81  E-value=1.7e-18  Score=180.87  Aligned_cols=176  Identities=13%  Similarity=0.143  Sum_probs=142.2

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAF--SPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-  149 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~Vtslaf--SPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-  149 (768)
                      ....++..|++++.|+.|++||..+.   .+.+|...|.+++|  ++++++|++++.|+.|++||+++++.+..+..+. 
T Consensus        93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  172 (368)
T 3mmy_A           93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER  172 (368)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSC
T ss_pred             EECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCC
Confidence            34457889999999999999999877   35689999999999  9999999999999999999999988777766543 


Q ss_pred             ----------------------------------------CCcEEEEEccCCCC----EEEEEeCCCeEEEEECCCC---
Q 004203          150 ----------------------------------------RTPWVVRFHPLNPT----IIASGSLDHEVRLWNASTA---  182 (768)
Q Consensus       150 ----------------------------------------g~V~sVafSP~dg~----lLaSgS~DgtVrLWDl~sg---  182 (768)
                                                              ..+.++.+.+ +..    .+++++.|+.|++||++..   
T Consensus       173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~  251 (368)
T 3mmy_A          173 CYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPA  251 (368)
T ss_dssp             EEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred             ceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence                                                    2233444444 333    2899999999999999886   


Q ss_pred             cEEEEec-CCC------------CeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCC
Q 004203          183 ECIGSRD-FYR------------PIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA  248 (768)
Q Consensus       183 ~~i~~l~-h~~------------~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~  248 (768)
                      +....+. |..            .|.+++|+|++++|++++.+ .|++||+.+++...   .+..|...|++++|+|+|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~g~  328 (368)
T 3mmy_A          252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK---TSEQLDQPISACCFNHNGN  328 (368)
T ss_dssp             HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---ECCCCSSCEEEEEECTTSS
T ss_pred             ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---EecCCCCCceEEEECCCCC
Confidence            3333332 332            69999999999999999955 49999999887644   5667899999999999999


Q ss_pred             eEEEEEe
Q 004203          249 PLLLTAE  255 (768)
Q Consensus       249 ~LlaS~s  255 (768)
                      +|++++.
T Consensus       329 ~l~~~s~  335 (368)
T 3mmy_A          329 IFAYASS  335 (368)
T ss_dssp             CEEEEEC
T ss_pred             eEEEEec
Confidence            8888876

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.1e-18  Score=192.70  Aligned_cols=175  Identities=14%  Similarity=0.072  Sum_probs=148.3

Q ss_pred             EEEecCCCEE-EEEeCCCeEEEEeCC--CCC----CC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE--
Q 004203           75 EAGRDARRGL-ASWVEAESLHHLRPK--YCP----LS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--  143 (768)
Q Consensus        75 ~a~~d~g~~L-vSgs~DgsIrlWd~~--t~~----L~--gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--  143 (768)
                      .+...++..| ++++.|+.|++||+.  .+.    +.  .|...|++++|+|++++|++++.|+.|++||+.+++...  
T Consensus       108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~  187 (450)
T 2vdu_B          108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT  187 (450)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC
T ss_pred             EEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc
Confidence            3445567775 899999999999998  542    32  677899999999999999999999999999998877544  


Q ss_pred             --EEecCCCCcEEEEEccCC---CCEEEEEeCCCeEEEEECCCCcEEEE-e-cCCCCeEEEEEcCCCCEEEEEECC-eEE
Q 004203          144 --VLHGHRRTPWVVRFHPLN---PTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGH-KLY  215 (768)
Q Consensus       144 --~l~gH~g~V~sVafSP~d---g~lLaSgS~DgtVrLWDl~sg~~i~~-l-~h~~~V~svafSPDG~~LatgSdd-~I~  215 (768)
                        .+.+|...|.+++|+| +   +++|++++.|++|++||+++++.+.. + +|...|.+++|+ ++++|++++.+ .|+
T Consensus       188 ~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~  265 (450)
T 2vdu_B          188 QEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIF  265 (450)
T ss_dssp             CCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEE
T ss_pred             ceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEE
Confidence              7788999999999999 7   88999999999999999999988776 3 588999999999 99999999955 599


Q ss_pred             EEEcCCCccccCCeEee-------------------------cCCCCeEEEEEccCCCeEEEEE
Q 004203          216 IWRYNMREETSSPRIVL-------------------------RTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       216 IWDl~t~~~~~~~~~l~-------------------------~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      +||+++++...   .+.                         .....|..+.|+|+++++++++
T Consensus       266 vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          266 AWDWKTGKNLS---TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             EEETTTCCEEE---EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             EEECCCCcEee---eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence            99999887533   111                         2346799999999999888877

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.81  E-value=1.2e-18  Score=191.60  Aligned_cols=174  Identities=16%  Similarity=0.209  Sum_probs=143.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC---eEEEEEe
Q 004203           82 RGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVLH  146 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg---~~l~~l~  146 (768)
                      ..|++++.|+.|++|++...           .+.+|...|.+++|+| ++.+|++++.|+.|++||++++   +.+..+.
T Consensus       195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~  274 (430)
T 2xyi_A          195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD  274 (430)
T ss_dssp             TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred             CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence            38999999999999999862           3568999999999999 7889999999999999999987   5778888


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEe-cCCCCeEEEEEcCCCC-EEEEEEC-CeEEEEEcCCC
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSR-DFYRPIASIAFHASGE-LLAVASG-HKLYIWRYNMR  222 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s-g~~i~~l-~h~~~V~svafSPDG~-~LatgSd-d~I~IWDl~t~  222 (768)
                      .|...|++++|+|++..++++++.|++|++||+++ ++++..+ .|...|.+++|+|+++ +|++++. +.|++||+...
T Consensus       275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            99999999999994445899999999999999998 4555555 4889999999999996 6778874 55999999873


Q ss_pred             ccc-----------cCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EET-----------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~-----------~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...           .......+|...|++++|+|+++++++++.
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s  398 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS  398 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence            321           112334567889999999999995555544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.81  E-value=3.7e-18  Score=192.13  Aligned_cols=190  Identities=12%  Similarity=0.089  Sum_probs=160.2

Q ss_pred             EEEEEec--CCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCEEEEEeCC----CeEEEE
Q 004203           73 IFEAGRD--ARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLASTHGD----HTVKII  134 (768)
Q Consensus        73 l~~a~~d--~g~~LvSgs~DgsIrlWd~~t~------------~L~gH~~~VtslafSPDG~~LaSgS~D----gtVrVW  134 (768)
                      ...+...  ++..|++++.|+.|++||..++            .+..|...|.+++|+||+++|++++.|    +.|++|
T Consensus        68 ~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~  147 (615)
T 1pgu_A           68 TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW  147 (615)
T ss_dssp             EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEET
T ss_pred             EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEE
Confidence            3444556  7889999999999999999632            466899999999999999999999988    788888


Q ss_pred             eCCCCeEEEEEecCCCCcEEEEEccCCCC-EEEEEeCCCeEEEEECCCCcEEEEec-CCC---CeEEEEEcCC-CCEEEE
Q 004203          135 DCQTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSRD-FYR---PIASIAFHAS-GELLAV  208 (768)
Q Consensus       135 Dl~tg~~l~~l~gH~g~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~---~V~svafSPD-G~~Lat  208 (768)
                      |  +++.+..+.+|...|.+++|+| ++. ++++++.|+.|++||+.+++.+..+. |..   .|.+++|+|+ +++|++
T Consensus       148 d--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (615)
T 1pgu_A          148 D--SGNSLGEVSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT  224 (615)
T ss_dssp             T--TCCEEEECCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred             E--CCCcceeeecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEE
Confidence            8  6778899999999999999999 665 89999999999999999999888875 777   8999999999 999999


Q ss_pred             EECC-eEEEEEcCCCccccCCeEe-e---cCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004203          209 ASGH-KLYIWRYNMREETSSPRIV-L---RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (768)
Q Consensus       209 gSdd-~I~IWDl~t~~~~~~~~~l-~---~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~  269 (768)
                      ++.+ .|++||+++++...   .+ .   .|...|.++.|+ +++++++++.     +|+++.++....+.
T Consensus       225 ~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          225 VGSDRKISCFDGKSGEFLK---YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             EETTCCEEEEETTTCCEEE---ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EeCCCeEEEEECCCCCEeE---EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            9954 59999998887543   33 3   789999999999 9998887764     77877654444433

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.81  E-value=2.8e-18  Score=188.39  Aligned_cols=171  Identities=19%  Similarity=0.213  Sum_probs=152.4

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ...+..+++++.|+.|++||+.+.    .+.+|...|.+++|+|++++|++++.|+.|++||+++++++..+.+|...|.
T Consensus       277 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~  356 (464)
T 3v7d_B          277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG  356 (464)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEE
Confidence            346788999999999999999876    4778999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeec
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      ++.|++   +++++++.|++|++||+++++......+...+..++|++++++|++++++.|++||+.+++...  .....
T Consensus       357 ~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~--~~~~~  431 (464)
T 3v7d_B          357 LLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH--ANILK  431 (464)
T ss_dssp             EEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEE--SCTTT
T ss_pred             EEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEe--hhhcc
Confidence            999964   8999999999999999999988888888888999999999999999998889999999987643  12456


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe
Q 004203          234 TRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |...|.+++|+  ++.+++++.
T Consensus       432 ~~~~v~~v~~~--~~~l~~~~~  451 (464)
T 3v7d_B          432 DADQIWSVNFK--GKTLVAAVE  451 (464)
T ss_dssp             TCSEEEEEEEE--TTEEEEEEE
T ss_pred             CCCcEEEEEec--CCEEEEEEE
Confidence            78899999997  566666665

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.4e-18  Score=176.36  Aligned_cols=167  Identities=13%  Similarity=0.162  Sum_probs=143.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEec-CCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~--~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-H~g~V~sV  155 (768)
                      .+..+++++.|+.|++||....  .+..|...|.++.|+| ++++|++++.|+.|++||  .++....+.. |...+.++
T Consensus       113 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~  190 (313)
T 3odt_A          113 QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHL  190 (313)
T ss_dssp             ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEE
T ss_pred             cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEE
Confidence            4678999999999999994332  4678999999999999 999999999999999999  5667777877 89999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeec
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      +|+| ++. +++++.|+.|++||+++++.+..+. |...|.+++|+|++. |++++ ++.|++||+++++...   .+..
T Consensus       191 ~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~---~~~~  264 (313)
T 3odt_A          191 AVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQ---VITL  264 (313)
T ss_dssp             EEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEE---EEEC
T ss_pred             EEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeE---EEec
Confidence            9999 776 9999999999999999999888765 889999999999995 66666 5569999999887544   5667


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe
Q 004203          234 TRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |...|.+++|+|+++ +++++.
T Consensus       265 ~~~~i~~~~~~~~~~-~~~~~~  285 (313)
T 3odt_A          265 PAISIWSVDCMSNGD-IIVGSS  285 (313)
T ss_dssp             SSSCEEEEEECTTSC-EEEEET
T ss_pred             cCceEEEEEEccCCC-EEEEeC
Confidence            888999999999998 555443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.80  E-value=1.2e-17  Score=178.49  Aligned_cols=166  Identities=13%  Similarity=0.222  Sum_probs=136.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203           82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa  156 (768)
                      ..+++++.|+.|++||..+++    +..| ..+.+++|+|||++| ++++.|++|++||+++++.+..+..+. .+.+++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            457788899999999998773    3344 459999999999987 567789999999999999998888665 799999


Q ss_pred             EccCCCCEE-EEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEE-EEE-CCeEEEEEcCCCccccCCeEeec
Q 004203          157 FHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA-VAS-GHKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       157 fSP~dg~lL-aSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~La-tgS-dd~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      |+| +++++ ++++.|+.|++||+.+++.+..+.+...+.+++|+|++++|+ +++ ++.|++||+.+++...    ...
T Consensus        81 ~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~~  155 (391)
T 1l0q_A           81 VSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN----TVS  155 (391)
T ss_dssp             ECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EEE
T ss_pred             ECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE----EEe
Confidence            999 77766 455677999999999999988888888899999999999884 554 4559999998876533    333


Q ss_pred             CCCCeEEEEEccCCCeEEEEE
Q 004203          234 TRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ....+..++|+|+|+++++++
T Consensus       156 ~~~~~~~~~~~~dg~~l~~~~  176 (391)
T 1l0q_A          156 VGRSPKGIAVTPDGTKVYVAN  176 (391)
T ss_dssp             CCSSEEEEEECTTSSEEEEEE
T ss_pred             cCCCcceEEECCCCCEEEEEe
Confidence            446789999999999886654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.7e-18  Score=210.24  Aligned_cols=161  Identities=8%  Similarity=0.075  Sum_probs=134.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCC---------------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPLS---------------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG----  139 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L~---------------gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg----  139 (768)
                      .++..|++++.|++|++||+.++.+.               +|...|++++|+|||++||+|+.|++|+|||+.++    
T Consensus       445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~  524 (902)
T 2oaj_A          445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS  524 (902)
T ss_dssp             SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred             ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence            35678999999999999999876432               78999999999999999999999999999999876    


Q ss_pred             -----------------------------------------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203          140 -----------------------------------------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (768)
Q Consensus       140 -----------------------------------------~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (768)
                                                               +++..+.+|.+.|++++|+| +| +||+|+.|++|+|||
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd  602 (902)
T 2oaj_A          525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLID  602 (902)
T ss_dssp             -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEE
T ss_pred             ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEE
Confidence                                                     24678889999999999999 88 999999999999999


Q ss_pred             CCCCcEEEE-----e--cCCCCeEEEEEc-----CCC---CEEEEEECCe-EEEEEc---CCCccccCCeEeec-----C
Q 004203          179 ASTAECIGS-----R--DFYRPIASIAFH-----ASG---ELLAVASGHK-LYIWRY---NMREETSSPRIVLR-----T  234 (768)
Q Consensus       179 l~sg~~i~~-----l--~h~~~V~svafS-----PDG---~~LatgSdd~-I~IWDl---~t~~~~~~~~~l~~-----h  234 (768)
                      ++++..+..     +  +|...|++++|+     |||   ++|++++.|+ |++||+   .+++...   .+.+     +
T Consensus       603 ~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~---~~~~~~~~~~  679 (902)
T 2oaj_A          603 RRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDV---QLMDITNVTS  679 (902)
T ss_dssp             TTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEE---EEEEEEECCS
T ss_pred             CCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEE---EecCceecCC
Confidence            988876542     2  578889999999     886   7999999654 999999   5554322   2333     3


Q ss_pred             CCCeEEEE-Ec
Q 004203          235 RRSLRAVH-FH  244 (768)
Q Consensus       235 ~~~V~sVa-FS  244 (768)
                      ...|..+. |+
T Consensus       680 ~~~v~~i~~~~  690 (902)
T 2oaj_A          680 KGPIHKIDAFS  690 (902)
T ss_dssp             SCCCCEEEEEE
T ss_pred             CCceEEEEeEe
Confidence            56777776 76

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.80  E-value=7.9e-18  Score=182.38  Aligned_cols=171  Identities=12%  Similarity=0.124  Sum_probs=145.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC---------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP---------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~---------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (768)
                      .++..++++..++.|++||..+++         +.+|...|.+++|+++++++++++.|+.|++||+++++.+..+..|.
T Consensus       132 ~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~  211 (433)
T 3bws_A          132 DNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG  211 (433)
T ss_dssp             SSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS
T ss_pred             CCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC
Confidence            355667777788899999998762         33788999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEccCCCCEE-EEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE---------CCeEEEEEc
Q 004203          150 RTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---------GHKLYIWRY  219 (768)
Q Consensus       150 g~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS---------dd~I~IWDl  219 (768)
                      ..+.+++|+| +++.+ ++++.|+.|++||+++++.+..+.....+.+++|+|+|++|++++         ++.|++||+
T Consensus       212 ~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~  290 (433)
T 3bws_A          212 KWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM  290 (433)
T ss_dssp             SSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred             CCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence            9999999999 77766 555589999999999999988888777899999999999998887         345999999


Q ss_pred             CCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ++++...    ...+...+..++|+|+++++++++
T Consensus       291 ~~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~~  321 (433)
T 3bws_A          291 DKEKLID----TIGPPGNKRHIVSGNTENKIYVSD  321 (433)
T ss_dssp             TTTEEEE----EEEEEECEEEEEECSSTTEEEEEE
T ss_pred             CCCcEEe----eccCCCCcceEEECCCCCEEEEEe
Confidence            8876533    344556899999999999777765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.79  E-value=2.7e-17  Score=169.31  Aligned_cols=180  Identities=20%  Similarity=0.320  Sum_probs=149.8

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC---------------------------------------------CCCCCC
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYC---------------------------------------------PLSPPP  107 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~---------------------------------------------~L~gH~  107 (768)
                      ...+...++..|++++.|+.|++|+..++                                             .+.+|.
T Consensus        71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (318)
T 4ggc_A           71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS  150 (318)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCcc
Confidence            34556667788888888888888887643                                             134688


Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----EEEEEecCCCCcEEEEEccCCCCEEE--EEeCCCeEEEEECCC
Q 004203          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIA--SGSLDHEVRLWNAST  181 (768)
Q Consensus       108 ~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~----~l~~l~gH~g~V~sVafSP~dg~lLa--SgS~DgtVrLWDl~s  181 (768)
                      ..+..+.|++++++|++++.|++|++||+++++    .......|.+.|..+.++|.+..++.  +++.+++|++||.+.
T Consensus       151 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~  230 (318)
T 4ggc_A          151 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  230 (318)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred             CceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence            899999999999999999999999999998865    34566778889999999996666554  567789999999999


Q ss_pred             CcEEEEecCCCCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          182 AECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       182 g~~i~~l~h~~~V~svafSPDG~~LatgS---dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ........+...+..+.|+|+++.+++++   ++.|++||+++++...   .+.+|...|++++|+|||++|++++.
T Consensus       231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~---~l~gH~~~V~~l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          231 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA---ELKGHTSRVLSLTMSPDGATVASAAA  304 (318)
T ss_dssp             CCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            99988888999999999999999888776   3459999999887644   67789999999999999998887764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.3e-18  Score=204.27  Aligned_cols=181  Identities=13%  Similarity=0.154  Sum_probs=151.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCC--eEEEEEecCCC
Q 004203           81 RRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTG--SCLKVLHGHRR  150 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPD--G~~LaSgS~DgtVrVWDl~tg--~~l~~l~gH~g  150 (768)
                      +..|++++.|+.|++||..++      .+.+|...|++++|+|+  +++|++++.|+.|++||++++  .....+.+|..
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~  146 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence            789999999999999999876      36689999999999999  999999999999999999887  34566788999


Q ss_pred             CcEEEEEccC------------CCCEEEEEeCCCeEEEEECCCCc----EEEEe-cCCCCeEEEEEcCC---CCEEEEEE
Q 004203          151 TPWVVRFHPL------------NPTIIASGSLDHEVRLWNASTAE----CIGSR-DFYRPIASIAFHAS---GELLAVAS  210 (768)
Q Consensus       151 ~V~sVafSP~------------dg~lLaSgS~DgtVrLWDl~sg~----~i~~l-~h~~~V~svafSPD---G~~LatgS  210 (768)
                      .|.++.|+|.            ++.++++++.||+|++||++++.    ....+ .|...|.+++|+|+   +++|++++
T Consensus       147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            9999999994            48899999999999999998873    33333 48899999999999   89999999


Q ss_pred             CC-eEEEEEcCCCcccc--CCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004203          211 GH-KLYIWRYNMREETS--SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (768)
Q Consensus       211 dd-~I~IWDl~t~~~~~--~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~s  261 (768)
                      .+ .|++||++++....  .......|...|.+++|+|+|+++++++.     +|++..
T Consensus       227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            55 49999998864221  11223447889999999999998888765     677663

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=3e-18  Score=207.97  Aligned_cols=183  Identities=13%  Similarity=0.082  Sum_probs=151.5

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (768)
                      ...+...++..|++++.|+.|++|+....+   ...|...|.+++|+| |++|++++.|++|++||+++++++..+. |.
T Consensus        21 ~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~   98 (902)
T 2oaj_A           21 IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VP   98 (902)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CS
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CC
Confidence            345556788999999999999999987653   235888999999999 8899999999999999999999988886 66


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE-----------E-ecCCCCeEEEEEcCC-CCEEEEEECCe-EE
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG-----------S-RDFYRPIASIAFHAS-GELLAVASGHK-LY  215 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~-----------~-l~h~~~V~svafSPD-G~~LatgSdd~-I~  215 (768)
                      +.|++++|+| +++++++|+.||+|++||++++++..           . ..|.+.|.+++|+|+ +..|+++++++ | 
T Consensus        99 ~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-  176 (902)
T 2oaj_A           99 GKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-  176 (902)
T ss_dssp             SCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred             CCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence            8899999999 99999999999999999999987641           1 237789999999996 46788887655 8 


Q ss_pred             EEEcCCCccccCCeEeec------------------CCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203          216 IWRYNMREETSSPRIVLR------------------TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (768)
Q Consensus       216 IWDl~t~~~~~~~~~l~~------------------h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg  262 (768)
                      +||+++.+...   .+..                  |...|++++|+|||++|++++.     +||++.+
T Consensus       177 lWd~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          177 TYSLVENEIKQ---SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             EEETTTTEEEE---EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             EEECCCCceEE---EEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            99999876533   2222                  3577999999999998887765     6777654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.78  E-value=1.1e-18  Score=190.41  Aligned_cols=173  Identities=14%  Similarity=0.098  Sum_probs=125.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeEEEE----------
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKV----------  144 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~----------  144 (768)
                      ++..|++++.|++|++||+...    .+.+|...|.+++|+|++ .+|++++.|++|++||+++++....          
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence            5678999999999999998765    466899999999999987 4899999999999999988764332          


Q ss_pred             ---------------EecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCC---------------
Q 004203          145 ---------------LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRP---------------  193 (768)
Q Consensus       145 ---------------l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~---------------  193 (768)
                                     ..+|...+.++.|++.+++.+++++.|+++++||+.+++....+. +...               
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence                           246778899999984499999999999999999998876544321 2111               


Q ss_pred             ---eEEEEEcC-CCC-EEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          194 ---IASIAFHA-SGE-LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       194 ---V~svafSP-DG~-~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                         .....|+| .+. ++++++ ++.|++||+.+++...   ....|...|++++|||||++|++++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~---~~~~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS---IPIQLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE---EEEECSSCEEEEEECTTSSEEEEEES
T ss_pred             cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE---EecCCCCcEEEEEEcCCCCEEEEEeC
Confidence               22234444 233 556666 4559999999887533   56778899999999999998877653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.78  E-value=2.3e-17  Score=177.43  Aligned_cols=182  Identities=8%  Similarity=0.018  Sum_probs=139.0

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC--CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~--L~gH~~~VtslafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      .+...++..|++++.+ .+++|+....+  +..+...+..++|.++++.+ ++++.|++|++||+.+++++..+. +...
T Consensus        25 v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~  102 (355)
T 3vu4_A           25 YEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAP  102 (355)
T ss_dssp             EEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSC
T ss_pred             EEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCc
Confidence            3344677788888766 47899987653  22233358889999988887 467788999999999999998887 5668


Q ss_pred             cEEEEEccCCC-----------------------------------CEEEE--EeCCCeEEEEECCCCc-----------
Q 004203          152 PWVVRFHPLNP-----------------------------------TIIAS--GSLDHEVRLWNASTAE-----------  183 (768)
Q Consensus       152 V~sVafSP~dg-----------------------------------~lLaS--gS~DgtVrLWDl~sg~-----------  183 (768)
                      |.++.|++ +.                                   .++++  |+.||.|++||+++++           
T Consensus       103 v~~v~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~  181 (355)
T 3vu4_A          103 VKDLFLSR-EFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ  181 (355)
T ss_dssp             EEEEEECS-SEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-------------
T ss_pred             eEEEEEcC-CEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence            99998887 32                                   23343  5788899999998765           


Q ss_pred             ------EEEEecCCCCeEEEEEcCCCCEEEEEE-CCe-EEEEEcCCCccccCCeEee-c-CCCCeEEEEEccCCCeEEEE
Q 004203          184 ------CIGSRDFYRPIASIAFHASGELLAVAS-GHK-LYIWRYNMREETSSPRIVL-R-TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       184 ------~i~~l~h~~~V~svafSPDG~~LatgS-dd~-I~IWDl~t~~~~~~~~~l~-~-h~~~V~sVaFSPDG~~LlaS  253 (768)
                            ......|...|.+++|+|+|++|++++ |+. |++||+++++...   .+. + |...|.+++|+|||++|+++
T Consensus       182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~---~~~~g~h~~~v~~~~~s~~~~~l~s~  258 (355)
T 3vu4_A          182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR---EFRRGLDRADVVDMKWSTDGSKLAVV  258 (355)
T ss_dssp             -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE---EEECTTCCSCEEEEEECTTSCEEEEE
T ss_pred             cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE---EEEcCCCCCcEEEEEECCCCCEEEEE
Confidence                  223346899999999999999999999 555 9999999887644   444 4 89999999999999988877


Q ss_pred             Ee-----eCCcCCC
Q 004203          254 AE-----VNDLDSS  262 (768)
Q Consensus       254 ~s-----vwdl~sg  262 (768)
                      +.     +|++...
T Consensus       259 s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          259 SDKWTLHVFEIFND  272 (355)
T ss_dssp             ETTCEEEEEESSCC
T ss_pred             ECCCEEEEEEccCC
Confidence            65     7777643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.78  E-value=9.7e-17  Score=171.42  Aligned_cols=174  Identities=16%  Similarity=0.211  Sum_probs=140.4

Q ss_pred             EEEecCCCEE-EEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCC
Q 004203           75 EAGRDARRGL-ASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        75 ~a~~d~g~~L-vSgs~DgsIrlWd~~t~~L---~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~  149 (768)
                      .+...++..+ ++++.|+.|++||..++++   ..+...+.+++|+||+++|+.+ +.|+.|++||+++++.+..+..+.
T Consensus        37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~  116 (391)
T 1l0q_A           37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK  116 (391)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC
Confidence            3444556655 6777999999999987732   1233499999999999988655 467999999999999988887654


Q ss_pred             CCcEEEEEccCCCCEE-EEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-C-CeEEEEEcCCCcccc
Q 004203          150 RTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-G-HKLYIWRYNMREETS  226 (768)
Q Consensus       150 g~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-d-d~I~IWDl~t~~~~~  226 (768)
                       .+.+++|+| +++.+ ++++.|+.|++||+.+++.+..+.....+..++|+|++++|++++ . +.|++||+++++...
T Consensus       117 -~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~  194 (391)
T 1l0q_A          117 -SPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID  194 (391)
T ss_dssp             -SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -CcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence             589999999 77765 788889999999999999988888778889999999999885544 3 459999998876533


Q ss_pred             CCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                          ...+...+.+++|+|+|+++++++
T Consensus       195 ----~~~~~~~~~~~~~~~~g~~l~~~~  218 (391)
T 1l0q_A          195 ----TVKVEAAPSGIAVNPEGTKAYVTN  218 (391)
T ss_dssp             ----EEECSSEEEEEEECTTSSEEEEEE
T ss_pred             ----EEecCCCccceEECCCCCEEEEEe
Confidence                344667899999999999888776

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.78  E-value=4.5e-17  Score=176.46  Aligned_cols=227  Identities=8%  Similarity=0.063  Sum_probs=170.4

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      ..++..+++++.|+.|++||..+.    ++..|...+.+++|+|+++++++++ .|+.|++||+++++.+..+..+ ..+
T Consensus       178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~  256 (433)
T 3bws_A          178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLP  256 (433)
T ss_dssp             GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEE
T ss_pred             cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCc
Confidence            456778899999999999999876    3557899999999999999886554 7999999999999988888765 458


Q ss_pred             EEEEEccCCCCEEEEEe--------CCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEE-E-CCeEEEEEcCCC
Q 004203          153 WVVRFHPLNPTIIASGS--------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVA-S-GHKLYIWRYNMR  222 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS--------~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~Latg-S-dd~I~IWDl~t~  222 (768)
                      ..++|+| +++.+++++        .|+.|++||+++++.+..+.+...+..++|+|+++.|++. + ++.|++||+.++
T Consensus       257 ~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          257 RGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             EEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             eEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence            9999999 888888887        5889999999999988888777889999999999876555 4 455999999977


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCC
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLI  302 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~  302 (768)
                      +...    ...+...+.+++|+|+|++++++....+....  . .+  ..|.   ....+.+|+..+.........    
T Consensus       336 ~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~--~-~~--~~g~---~dg~v~~~d~~~~~~~~~~~~----  399 (433)
T 3bws_A          336 KVQK----SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTE--G-YL--KKGL---VLGKVYVIDTTTDTVKEFWEA----  399 (433)
T ss_dssp             EEEE----EEECSSSEEEEEECTTSSEEEEEECCCCCTTT--C-TT--SCCS---SCCEEEEEETTTTEEEEEEEC----
T ss_pred             cEEE----EecCCCCCCeEEEcCCCCEEEEEecCCCcccc--c-cc--cccc---cceEEEEEECCCCcEEEEecC----
Confidence            6433    34467889999999999988777653221100  0 00  0010   123567777555433322221    


Q ss_pred             CCCceEEEEecCCCEEEEEe
Q 004203          303 TPPFLRPSFVRDDERISLQH  322 (768)
Q Consensus       303 slpil~psFSpDG~rIv~~~  322 (768)
                      .......+|+|||+.|++..
T Consensus       400 ~~~~~~~~~s~dg~~l~~~~  419 (433)
T 3bws_A          400 GNQPTGLDVSPDNRYLVISD  419 (433)
T ss_dssp             SSSEEEEEECTTSCEEEEEE
T ss_pred             CCCCceEEEcCCCCEEEEEE
Confidence            22356789999999998753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.78  E-value=9.1e-18  Score=193.22  Aligned_cols=162  Identities=15%  Similarity=0.155  Sum_probs=125.0

Q ss_pred             EEEeCCCeEEEEeCCCC----CCC-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC-----CcEE
Q 004203           85 ASWVEAESLHHLRPKYC----PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR-----TPWV  154 (768)
Q Consensus        85 vSgs~DgsIrlWd~~t~----~L~-gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g-----~V~s  154 (768)
                      +.-+.||.++.|+..+.    .+. .|...|.+++|||||++||+++.||.|++||.++  ++..+. |..     .|.+
T Consensus        58 V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~s  134 (588)
T 2j04_A           58 VKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHC  134 (588)
T ss_dssp             EEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEE
T ss_pred             EEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEE
Confidence            44455555555666543    233 6788999999999999999999999999999654  667777 665     4999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcE-------EEEe-----cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAEC-------IGSR-----DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM  221 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~-------i~~l-----~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t  221 (768)
                      ++||| |+++|++|+.||+|+|||+.+++.       +.++     +|...|.+++|+|||  |++++ |+.|++||+..
T Consensus       135 vafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~  211 (588)
T 2j04_A          135 FEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA  211 (588)
T ss_dssp             EEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred             EEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence            99999 999999999999999999998853       4443     366799999999999  55555 56699999988


Q ss_pred             CccccCCeEe-ecCCCCeEEEEEccCCCeEEEEE
Q 004203          222 REETSSPRIV-LRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       222 ~~~~~~~~~l-~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      .........+ ..|...|.+++|+  |+.+++++
T Consensus       212 ~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          212 SSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             SSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred             CccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence            7632111233 3678899999999  56666654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.77  E-value=6.1e-18  Score=184.28  Aligned_cols=161  Identities=13%  Similarity=0.073  Sum_probs=124.7

Q ss_pred             CCCeEEEEeCCC-C----CCCCCCCCeEEEEECC---CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC---CCcEEEEE
Q 004203           89 EAESLHHLRPKY-C----PLSPPPRSTIAAAFSP---DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR---RTPWVVRF  157 (768)
Q Consensus        89 ~DgsIrlWd~~t-~----~L~gH~~~VtslafSP---DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~---g~V~sVaf  157 (768)
                      .|+.|++|++.. +    .+.+|...++.++|++   |+.+|++++.|++|+|||+++|+++++|.+|.   ..+.+++|
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence            499999999944 4    3457888999999999   77999999999999999999999999998754   35777899


Q ss_pred             ccCCCCEE------------EEEeCCCeEEEEECCCCcEEEEe------cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEE
Q 004203          158 HPLNPTII------------ASGSLDHEVRLWNASTAECIGSR------DFYRPIASIAFHASGELLAVASG-HKLYIWR  218 (768)
Q Consensus       158 SP~dg~lL------------aSgS~DgtVrLWDl~sg~~i~~l------~h~~~V~svafSPDG~~LatgSd-d~I~IWD  218 (768)
                      +| ++.++            ++|+.|++|++||..+++.+..+      +|...+.+..+  ++.++++++. ++|+|||
T Consensus       235 Sp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWD  311 (356)
T 2w18_A          235 SE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWD  311 (356)
T ss_dssp             EE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred             CC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEE
Confidence            99 88776            66889999999999999987664      34444444444  4888999984 5599999


Q ss_pred             cCCCccccCCeEeecCCCCeE-EEEEccCCCeEEEEEe
Q 004203          219 YNMREETSSPRIVLRTRRSLR-AVHFHPHAAPLLLTAE  255 (768)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~-sVaFSPDG~~LlaS~s  255 (768)
                      +.+++...   .+.+|...+. .++|||||++|++++.
T Consensus       312 l~tGk~l~---tL~gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          312 LLLGQCTA---LLPPVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             TTTCSEEE---EECCC--CCCCEEEECSSSSEEEEECT
T ss_pred             CCCCcEEE---EecCCCCCeEEEEEECCCCCEEEEEEC
Confidence            99998654   5666766554 6899999998777654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.75  E-value=2.8e-17  Score=176.73  Aligned_cols=169  Identities=11%  Similarity=0.077  Sum_probs=126.6

Q ss_pred             EEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCC-----------------------------------CEEEE--
Q 004203           85 ASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDG-----------------------------------KTLAS--  124 (768)
Q Consensus        85 vSgs~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG-----------------------------------~~LaS--  124 (768)
                      ++++.|+.|++||..+++   ...|...|.+++|+++.                                   .++++  
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~s  154 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSN  154 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEE
T ss_pred             EEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeC
Confidence            456666777777776552   11255567777776542                                   34444  


Q ss_pred             EeCCCeEEEEeCCCCe----------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEE
Q 004203          125 THGDHTVKIIDCQTGS----------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGS  187 (768)
Q Consensus       125 gS~DgtVrVWDl~tg~----------------~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~sg~~i~~  187 (768)
                      ++.||.|++||+++++                ++..+.+|.+.|.+++|+| ++++|++++.|++ |+|||+++++++..
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~  233 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVRE  233 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            4779999999998865                2688899999999999999 9999999999998 99999999999988


Q ss_pred             ec---CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEe---------------------ecCCCCeEEEE
Q 004203          188 RD---FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV---------------------LRTRRSLRAVH  242 (768)
Q Consensus       188 l~---h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l---------------------~~h~~~V~sVa  242 (768)
                      +.   |...|.+++|+|+|++|++++.++ |++||++...... ...+                     .........++
T Consensus       234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (355)
T 3vu4_A          234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK-RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA  312 (355)
T ss_dssp             EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC-SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred             EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc-cccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence            75   889999999999999999999654 9999997654211 0000                     00112346789


Q ss_pred             EccCCCeEEEEEe
Q 004203          243 FHPHAAPLLLTAE  255 (768)
Q Consensus       243 FSPDG~~LlaS~s  255 (768)
                      |++||+++++.+.
T Consensus       313 ~~~d~~~l~~~~~  325 (355)
T 3vu4_A          313 WISESSLVVVWPH  325 (355)
T ss_dssp             ESSSSEEEEEETT
T ss_pred             EeCCCCEEEEEeC
Confidence            9999997777653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.74  E-value=7.8e-17  Score=176.78  Aligned_cols=167  Identities=17%  Similarity=0.326  Sum_probs=142.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      .+..+++++.|+.|++||..+.       .+.+|...|.+++|  ++++|++++.|+.|++||+++++.+..+.+|...|
T Consensus       222 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v  299 (435)
T 1p22_A          222 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI  299 (435)
T ss_dssp             CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcE
Confidence            3568899999999999998765       25689999999999  78999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCcccc----
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETS----  226 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~----  226 (768)
                      .++.|+   ++++++|+.|++|++||+++++++..+. |...|.+++|  ++++|++++.+ .|++||+.+.....    
T Consensus       300 ~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  374 (435)
T 1p22_A          300 ACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAG  374 (435)
T ss_dssp             EEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred             EEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcccccc
Confidence            999984   5899999999999999999999988875 8889999999  78899999955 59999997654210    


Q ss_pred             --CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          227 --SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       227 --~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                        ....+..|...|.+++|  +++++++++.
T Consensus       375 ~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~  403 (435)
T 1p22_A          375 TLCLRTLVEHSGRVFRLQF--DEFQIVSSSH  403 (435)
T ss_dssp             TTEEEEECCCSSCCCCEEE--CSSCEEECCS
T ss_pred             chheeeccCCCCCeEEEEe--CCCEEEEEeC
Confidence              12345678899999999  7777776653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=3.2e-16  Score=157.79  Aligned_cols=164  Identities=12%  Similarity=0.063  Sum_probs=126.5

Q ss_pred             EeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEecCC-CCcEEEEEccCC
Q 004203           87 WVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHR-RTPWVVRFHPLN  161 (768)
Q Consensus        87 gs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-g~~l~~l~gH~-g~V~sVafSP~d  161 (768)
                      .+.++.|++||..++   .+..|...|.+++|+|||++|++++ ++.|++||+++ ++....+.++. ..+.+++|+| +
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-d   95 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-D   95 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-T
T ss_pred             CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-C
Confidence            356889999999877   3567899999999999999999987 78999999999 88777776663 6788999999 9


Q ss_pred             CCEEEEEeC--C--CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEE-EE-CCeEEEEEcCCCccccCCeEeecCC
Q 004203          162 PTIIASGSL--D--HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV-AS-GHKLYIWRYNMREETSSPRIVLRTR  235 (768)
Q Consensus       162 g~lLaSgS~--D--gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~Lat-gS-dd~I~IWDl~t~~~~~~~~~l~~h~  235 (768)
                      +++|++++.  +  ..|++||+.+++. ..+.....+..++|+||+++|++ +. ++.+++|+++....  ....+..+.
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~  172 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--VETRLTHGE  172 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--CEEECCCSS
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC--cceEcccCC
Confidence            999999883  3  3555566666653 34444455899999999998874 44 56688888754322  123455677


Q ss_pred             CCeEEEEEccCCCeEEEEEe
Q 004203          236 RSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       236 ~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..+.++.|+|+|+++++++.
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEEC
T ss_pred             CccccceECCCCCEEEEEec
Confidence            88999999999998887764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.73  E-value=5.1e-16  Score=171.24  Aligned_cols=173  Identities=16%  Similarity=0.103  Sum_probs=140.2

Q ss_pred             EEecCCCEEEEEeCCC---eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEE-EEeCCC--eEEEEeCCCCeEEEEEe
Q 004203           76 AGRDARRGLASWVEAE---SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLA-STHGDH--TVKIIDCQTGSCLKVLH  146 (768)
Q Consensus        76 a~~d~g~~LvSgs~Dg---sIrlWd~~t~---~L~gH~~~VtslafSPDG~~La-SgS~Dg--tVrVWDl~tg~~l~~l~  146 (768)
                      +...+++.|+.++.++   .|++||+.++   .+..|...+.+++|+|||++|+ +++.|+  .|++||+++++. ..+.
T Consensus       185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~  263 (415)
T 2hqs_A          185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT  263 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC
T ss_pred             EEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc
Confidence            3455788899888875   8999999877   3567888999999999999888 666555  499999998875 5677


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEc
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRY  219 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl  219 (768)
                      .|...+..++|+| +++.|++++. ++  .|++||+.+++......+...+..++|+|||++|++++.+    .|++||+
T Consensus       264 ~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          264 DGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             CCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence            8888999999999 8888888776 44  7888899988766555566788899999999999988742    4999999


Q ss_pred             CCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .+++..    .+..+. .+.+++|+|||++|++++.
T Consensus       343 ~~~~~~----~l~~~~-~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          343 ATGGVQ----VLSSTF-LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             TTCCEE----ECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred             CCCCEE----EecCCC-CcCCeEEcCCCCEEEEEEc
Confidence            887642    233443 8999999999998887765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.73  E-value=9.5e-17  Score=174.89  Aligned_cols=140  Identities=11%  Similarity=0.130  Sum_probs=111.6

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCC----CCCC---CCCeEEEEECCCCCEE------------EEEeCCCeEEEEeCCC
Q 004203           78 RDARRGLASWVEAESLHHLRPKYCP----LSPP---PRSTIAAAFSPDGKTL------------ASTHGDHTVKIIDCQT  138 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH---~~~VtslafSPDG~~L------------aSgS~DgtVrVWDl~t  138 (768)
                      .+++..|++++.|++|++||+.+++    +.+|   ...|.+++|+|||+++            ++|+.|++|++||.++
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred             CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence            4577899999999999999999874    4444   3478889999999987            5678899999999999


Q ss_pred             CeEEEEE-----ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCe-EEEEEcCCCCEEEEEEC
Q 004203          139 GSCLKVL-----HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPI-ASIAFHASGELLAVASG  211 (768)
Q Consensus       139 g~~l~~l-----~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V-~svafSPDG~~LatgSd  211 (768)
                      ++.+..+     .+|...+.+..+   ++.++++++.|++|+|||+.+++++.++. |...+ ..++|+|||++|++|+.
T Consensus       270 gk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          270 TLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             TEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred             CEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence            9988766     377666544333   47899999999999999999999999985 65544 46899999999999996


Q ss_pred             Ce-EEEEEcC
Q 004203          212 HK-LYIWRYN  220 (768)
Q Consensus       212 d~-I~IWDl~  220 (768)
                      |+ |+|||+.
T Consensus       347 D~TIklWd~~  356 (356)
T 2w18_A          347 DGNIFVYHYS  356 (356)
T ss_dssp             TSCEEEEEEC
T ss_pred             CCcEEEecCC
Confidence            55 9999963

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.71  E-value=7.9e-16  Score=171.52  Aligned_cols=176  Identities=15%  Similarity=0.111  Sum_probs=135.3

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-----------C--------CCCCCCCeEEEEECCCCCEEE----EEeCCCeE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC-----------P--------LSPPPRSTIAAAFSPDGKTLA----STHGDHTV  131 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~-----------~--------L~gH~~~VtslafSPDG~~La----SgS~DgtV  131 (768)
                      .+....+..++.++.++ +++|+....           .        ...|...|++++|+|||++|+    +++.|++|
T Consensus        42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v  120 (434)
T 2oit_A           42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII  120 (434)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred             EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence            33445677788888877 888764311           0        113556799999999999999    78889999


Q ss_pred             EEEeCCCC--------e---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEE
Q 004203          132 KIIDCQTG--------S---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAF  199 (768)
Q Consensus       132 rVWDl~tg--------~---~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svaf  199 (768)
                      +|||++++        +   .+..+.+|...|.+++|+|+++.+|++++.|++|++||+++++.... ..|...|.+++|
T Consensus       121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~w  200 (434)
T 2oit_A          121 AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCW  200 (434)
T ss_dssp             EEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEE
T ss_pred             EEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEE
Confidence            99998764        2   24566789999999999995589999999999999999999866543 457889999999


Q ss_pred             cCCCCEEEEEECC-eEEEEEcCCCccccCCeEeec-------CCCCeEEEEEccCCCeEEEEEe
Q 004203          200 HASGELLAVASGH-KLYIWRYNMREETSSPRIVLR-------TRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       200 SPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~-------h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +|+|++|++++.+ .|++||++ ++...   .+..       |...|.++.|++++.++++...
T Consensus       201 spdg~~lasgs~dg~v~iwd~~-~~~~~---~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~  260 (434)
T 2oit_A          201 SPKGKQLAVGKQNGTVVQYLPT-LQEKK---VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA  260 (434)
T ss_dssp             CTTSSCEEEEETTSCEEEECTT-CCEEE---EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred             cCCCCEEEEEcCCCcEEEEccC-Ccccc---cccCCcccCCCCceeEEEEEEecCceEEEEEcc
Confidence            9999999999955 59999998 32211   1111       2337999999999887665543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=5e-15  Score=149.03  Aligned_cols=233  Identities=11%  Similarity=0.047  Sum_probs=156.1

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCC-CC----CCCC-CCCeEEEEECCCCCEEEEEeC--C--CeEEEEeCCCCeEEEEE
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKY-CP----LSPP-PRSTIAAAFSPDGKTLASTHG--D--HTVKIIDCQTGSCLKVL  145 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t-~~----L~gH-~~~VtslafSPDG~~LaSgS~--D--gtVrVWDl~tg~~l~~l  145 (768)
                      ....++..|+.+. ++.|.+||..+ ++    +..| ...|.+++|+|||++|++++.  +  ..|.+||+.+++ ...+
T Consensus        48 ~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~  125 (297)
T 2ojh_A           48 NWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLM  125 (297)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEEC
T ss_pred             EECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEe
Confidence            3445677777765 78999999988 63    3344 467899999999999999993  3  455555666655 4445


Q ss_pred             ecCCCCcEEEEEccCCCCEEE-EEeCCCeEEEEEC--CCCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcC
Q 004203          146 HGHRRTPWVVRFHPLNPTIIA-SGSLDHEVRLWNA--STAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYN  220 (768)
Q Consensus       146 ~gH~g~V~sVafSP~dg~lLa-SgS~DgtVrLWDl--~sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~  220 (768)
                      ..+. .+..++|+| +++.|+ ++..|+.++||++  .+++......+...+.+++|+|+|++|++++  ++.+++|+++
T Consensus       126 ~~~~-~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          126 TKNL-PSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             CSSS-SEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ecCC-CccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence            4444 488899999 777666 7888998899885  4566555566778999999999999888776  3458888886


Q ss_pred             CCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccC
Q 004203          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVP  300 (768)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~  300 (768)
                      ....  ....+..+...+..+.|+|+|++|++++........            ..+....+.+++...+....+... .
T Consensus       204 ~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~------------~~~~~~~l~~~d~~~~~~~~~~~~-~  268 (297)
T 2ojh_A          204 VDGS--SVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH------------PRDLDVRVQLMDMDGGNVETLFDL-F  268 (297)
T ss_dssp             TTSS--CEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC------------CSSEEEEEEEEETTSCSCEEEEEE-E
T ss_pred             CCCC--CcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc------------cccCceEEEEEecCCCCceeeecc-C
Confidence            3322  123455567789999999999988887654321100            000112455555544333222211 1


Q ss_pred             CCCCCceEEEEecCCCEEEEEecCCCC
Q 004203          301 LITPPFLRPSFVRDDERISLQHTEHDS  327 (768)
Q Consensus       301 ~~slpil~psFSpDG~rIv~~~~d~~~  327 (768)
                      .....+..+.|+|||++|++..+++..
T Consensus       269 ~~~~~~~~~~~spdg~~l~~~~~~~~~  295 (297)
T 2ojh_A          269 GGQGTMNSPNWSPDGDEFAYVRYFPVE  295 (297)
T ss_dssp             ESTTTSCSCCBCTTSSEEEEEEECCC-
T ss_pred             CCCcccccceECCCCCEEEEEEeccCC
Confidence            112345568999999999997666543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.69  E-value=4.5e-15  Score=154.85  Aligned_cols=174  Identities=9%  Similarity=0.074  Sum_probs=134.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCeE-EEEEecCCCCc
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSC-LKVLHGHRRTP  152 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L----~gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~tg~~-l~~l~gH~g~V  152 (768)
                      +.+..+++...++.|.+||..++++    ..+...+ .++|+|||++|++++. ++.|++||+++++. ...+..+....
T Consensus         8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~   86 (331)
T 3u4y_A            8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM   86 (331)
T ss_dssp             CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred             CCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence            3455677888899999999987742    3455566 9999999997777766 89999999999987 77777776666


Q ss_pred             EEEEEccCCCCEEEEEeCCC---eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCe-EEEEEcCCCcccc
Q 004203          153 WVVRFHPLNPTIIASGSLDH---EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHK-LYIWRYNMREETS  226 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~Dg---tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~-I~IWDl~t~~~~~  226 (768)
                      .+++|+| ++++++++..++   .|++||+.+++.+..+........++|+|||++|++++  ++. |++|++.......
T Consensus        87 ~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~  165 (331)
T 3u4y_A           87 ADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF  165 (331)
T ss_dssp             CCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence            5599999 888888555443   89999999999988888777889999999998666654  367 9999998654321


Q ss_pred             CC-eEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          227 SP-RIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       227 ~~-~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      .. .........+..++|+|||++++++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~  194 (331)
T 3u4y_A          166 DTGQEFISGGTRPFNITFTPDGNFAFVAN  194 (331)
T ss_dssp             EEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred             ecCCccccCCCCccceEECCCCCEEEEEe
Confidence            11 12234456789999999999777665

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.69  E-value=1.7e-16  Score=184.41  Aligned_cols=168  Identities=9%  Similarity=-0.027  Sum_probs=126.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CCCCCC---CeEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCeEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP----LSPPPR---STIAAAFSPDGKTLASTHGD---------HTVKIIDCQTGSCLK  143 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~---~VtslafSPDG~~LaSgS~D---------gtVrVWDl~tg~~l~  143 (768)
                      ++..+++ +.|+.|++||..+++    +..|..   .|.+++|||||++|++++.+         +.|++||+++++. .
T Consensus        27 dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~  104 (723)
T 1xfd_A           27 DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-Q  104 (723)
T ss_dssp             SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-E
T ss_pred             CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-E
Confidence            3444444 678899999998773    344554   49999999999999999874         7889999999876 3


Q ss_pred             EEe---cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCC------------------eEEEEEcC
Q 004203          144 VLH---GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRP------------------IASIAFHA  201 (768)
Q Consensus       144 ~l~---gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h-~~~------------------V~svafSP  201 (768)
                      .+.   +|...+..++||| |++.|++++. +.|++||+.+++....... ...                  +..++|+|
T Consensus       105 ~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp  182 (723)
T 1xfd_A          105 SLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (723)
T ss_dssp             ECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC
Confidence            343   3444588899999 9999999886 7899999999887665432 222                  37899999


Q ss_pred             CCCEEEEEECC-----------------------------------eEEEEEcCCCccccCCeEeec------CCCCeEE
Q 004203          202 SGELLAVASGH-----------------------------------KLYIWRYNMREETSSPRIVLR------TRRSLRA  240 (768)
Q Consensus       202 DG~~LatgSdd-----------------------------------~I~IWDl~t~~~~~~~~~l~~------h~~~V~s  240 (768)
                      ||++|++++.+                                   .|++||+.+++...   .+..      +...+..
T Consensus       183 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~---~l~~~~~~~~~~~~~~~  259 (723)
T 1xfd_A          183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL---EMMPPDDPRMREYYITM  259 (723)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE---ECCCCCCGGGSSEEEEE
T ss_pred             CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE---EeeCCccCCCccceeEE
Confidence            99999988732                                   58999998776311   2222      2567899


Q ss_pred             EEEccCCCeEEEEE
Q 004203          241 VHFHPHAAPLLLTA  254 (768)
Q Consensus       241 VaFSPDG~~LlaS~  254 (768)
                      ++|||||+++++..
T Consensus       260 ~~~SpDg~~l~~~~  273 (723)
T 1xfd_A          260 VKWATSTKVAVTWL  273 (723)
T ss_dssp             EEESSSSEEEEEEE
T ss_pred             EEEeCCCeEEEEEE
Confidence            99999999765554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.68  E-value=1.9e-15  Score=176.25  Aligned_cols=174  Identities=10%  Similarity=0.045  Sum_probs=134.0

Q ss_pred             EEEecCCCEEEEEeC-CC-----eEEEEeCCCCC----CCCCC------------------------CCeEEEEECCCCC
Q 004203           75 EAGRDARRGLASWVE-AE-----SLHHLRPKYCP----LSPPP------------------------RSTIAAAFSPDGK  120 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~-Dg-----sIrlWd~~t~~----L~gH~------------------------~~VtslafSPDG~  120 (768)
                      .+.+.+++.|++.+. |+     .|.+||+.+++    +..+.                        ..|.+++|||||+
T Consensus        42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~  121 (741)
T 2ecf_A           42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ  121 (741)
T ss_dssp             EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred             ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence            334467788888887 77     89999998763    22222                        2388999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCe--EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-----
Q 004203          121 TLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP-----  193 (768)
Q Consensus       121 ~LaSgS~DgtVrVWDl~tg~--~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~-----  193 (768)
                      +|++++. +.|++||+.+++  ....+..|...+..++|+| |+++|++++. +.|++||+.+++..........     
T Consensus       122 ~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g  198 (741)
T 2ecf_A          122 RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNG  198 (741)
T ss_dssp             EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEES
T ss_pred             EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceecc
Confidence            9999987 899999999883  3455677888899999999 9999999874 5899999999887665432221     


Q ss_pred             ------------eEEEEEcCCCCEEEEEE-CC---------------------------------eEEEEEcCC-Ccccc
Q 004203          194 ------------IASIAFHASGELLAVAS-GH---------------------------------KLYIWRYNM-REETS  226 (768)
Q Consensus       194 ------------V~svafSPDG~~LatgS-dd---------------------------------~I~IWDl~t-~~~~~  226 (768)
                                  +..++|+|||++|++++ ++                                 .|++||+.+ ++...
T Consensus       199 ~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~  278 (741)
T 2ecf_A          199 IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW  278 (741)
T ss_dssp             CCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE
T ss_pred             ccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE
Confidence                        47799999999998886 32                                 588889887 65322


Q ss_pred             CCeEee--cCCCCeEEEEEccCCCeEEEEEe
Q 004203          227 SPRIVL--RTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       227 ~~~~l~--~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                         ...  .+...+..++| |||++|+++..
T Consensus       279 ---~~~~~~~~~~~~~~~~-pDg~~l~~~~~  305 (741)
T 2ecf_A          279 ---IDLGKEQDIYLARVNW-RDPQHLSFQRQ  305 (741)
T ss_dssp             ---ECCCSCSSEEEEEEEE-EETTEEEEEEE
T ss_pred             ---ecCCCCcceEEEEEEe-CCCCEEEEEEe
Confidence               111  36678999999 99998887764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.67  E-value=2.4e-14  Score=164.37  Aligned_cols=260  Identities=10%  Similarity=0.042  Sum_probs=179.1

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeC--CCCC----CCCCCCCeEEEEECC----CCCEEEEEeC-CCeEEEEeCCCCeEE
Q 004203           74 FEAGRDARRGLASWVEAESLHHLRP--KYCP----LSPPPRSTIAAAFSP----DGKTLASTHG-DHTVKIIDCQTGSCL  142 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs~DgsIrlWd~--~t~~----L~gH~~~VtslafSP----DG~~LaSgS~-DgtVrVWDl~tg~~l  142 (768)
                      ..+...+++.|++++.|+.|.+||+  .+.+    +. +...+..++|+|    ||++|++++. +++|.+||..+++++
T Consensus       183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~  261 (543)
T 1nir_A          183 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK  261 (543)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred             eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc
Confidence            4446678899999999999999999  5552    33 455689999999    9999999985 899999999999999


Q ss_pred             EEEecC-----------CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE--EecCCCCeEEEEEcCCCCEEEEE
Q 004203          143 KVLHGH-----------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIASIAFHASGELLAVA  209 (768)
Q Consensus       143 ~~l~gH-----------~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~--~l~h~~~V~svafSPDG~~Latg  209 (768)
                      ..+..+           ...+..+.++|++..++++...+++|.+||+.+.+.+.  .+.+...+..++|+|||++|+++
T Consensus       262 ~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va  341 (543)
T 1nir_A          262 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTA  341 (543)
T ss_dssp             EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEE
T ss_pred             eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEE
Confidence            888653           22688999999666677888889999999999876544  45666778889999999988777


Q ss_pred             E--CCeEEEEEcCCCccccCCeEeec----CCCCeEEEEEccCCCeEEEEEe-------eCCcCC-------CCcceeEe
Q 004203          210 S--GHKLYIWRYNMREETSSPRIVLR----TRRSLRAVHFHPHAAPLLLTAE-------VNDLDS-------SESSLTLA  269 (768)
Q Consensus       210 S--dd~I~IWDl~t~~~~~~~~~l~~----h~~~V~sVaFSPDG~~LlaS~s-------vwdl~s-------g~~~~~L~  269 (768)
                      +  +++|.+||+.+++...   .+..    |......+ ++|++..+++++.       +|++..       ++....+.
T Consensus       342 ~~~~~~v~v~D~~tg~l~~---~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~  417 (543)
T 1nir_A          342 ANNSNKVAVIDSKDRRLSA---LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ  417 (543)
T ss_dssp             EGGGTEEEEEETTTTEEEE---EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             ecCCCeEEEEECCCCeEEE---eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence            6  4679999999987643   2221    43333333 5788555555542       677766       44444444


Q ss_pred             ecCCc---ccCC------------------CCeEEEecCCCCCCC-Ccc-c----ccCCCCCCceEEEEecCCCEEEEE-
Q 004203          270 TSPGY---WRYP------------------PPVICMAGAHSSSHP-GLA-E----EVPLITPPFLRPSFVRDDERISLQ-  321 (768)
Q Consensus       270 t~~G~---~~~p------------------~~~V~l~d~~s~d~~-~L~-~----~~~~~slpil~psFSpDG~rIv~~-  321 (768)
                      ...+.   ..+.                  ...|.+++..+.+.. ... .    .........+.+.|++||+.+.+. 
T Consensus       418 ~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~  497 (543)
T 1nir_A          418 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV  497 (543)
T ss_dssp             CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred             cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence            33221   1110                  226777776665543 211 0    012223456689999999999986 


Q ss_pred             ecCCCCCcceEEeccCC
Q 004203          322 HTEHDSGATRTQQSLRS  338 (768)
Q Consensus       322 ~~d~~~Gs~~~~~~~~s  338 (768)
                      |+..+..+...+.+..+
T Consensus       498 ~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          498 WNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             ECCTTSCCEEEEEETTT
T ss_pred             ecCCCCCCeEEEEECCC
Confidence            76544333444444443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.65  E-value=1.8e-14  Score=165.46  Aligned_cols=238  Identities=12%  Similarity=0.049  Sum_probs=168.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CC-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC--CCCeEEEEEecCCCC
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP----LS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC--QTGSCLKVLHGHRRT  151 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~----L~-gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl--~tg~~l~~l~gH~g~  151 (768)
                      .++..+++...|++|.+||..+++    +. ++.  +.+++|+|||++|++++.|++|++||+  .+++++..+.. ...
T Consensus       147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~  223 (543)
T 1nir_A          147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIE  223 (543)
T ss_dssp             GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSE
T ss_pred             CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCC
Confidence            356778888999999999998874    33 333  899999999999999999999999999  89999888874 556


Q ss_pred             cEEEEEccC---CCCEEEEEe-CCCeEEEEECCCCcEEEEecC------------CCCeEEEEEcCCCCEEEEEE--CCe
Q 004203          152 PWVVRFHPL---NPTIIASGS-LDHEVRLWNASTAECIGSRDF------------YRPIASIAFHASGELLAVAS--GHK  213 (768)
Q Consensus       152 V~sVafSP~---dg~lLaSgS-~DgtVrLWDl~sg~~i~~l~h------------~~~V~svafSPDG~~LatgS--dd~  213 (768)
                      ++.++|+|.   +++++++++ .+++|.+||..+++++..+..            ...+..+.++|++..+++..  ++.
T Consensus       224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~  303 (543)
T 1nir_A          224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK  303 (543)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCe
Confidence            899999982   456666665 589999999999998887642            22788999999988776665  355


Q ss_pred             EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEee----cCCcc-c------
Q 004203          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLAT----SPGYW-R------  276 (768)
Q Consensus       214 I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~~~~~L~t----~~G~~-~------  276 (768)
                      |.+||+.+.+...  .....+...+..+.|+|||+++++++.      +||+.+++....+..    +.+.. .      
T Consensus       304 i~vvd~~~~~~l~--~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~  381 (543)
T 1nir_A          304 VLLVNYKDIDNLT--VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY  381 (543)
T ss_dssp             EEEEECTTSSSCE--EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTT
T ss_pred             EEEEEecCCCcce--eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCC
Confidence            9999998765422  123346677899999999998887664      677776544443332    11100 0      


Q ss_pred             ---C-----CCCeEEEecCCCCCC----CCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203          277 ---Y-----PPPVICMAGAHSSSH----PGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (768)
Q Consensus       277 ---~-----p~~~V~l~d~~s~d~----~~L~~~~~~~slpil~psFSpDG~rIv~~  321 (768)
                         |     -...|.+++..+...    ..+...........+...|+|||++|++.
T Consensus       382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~  438 (543)
T 1nir_A          382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD  438 (543)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred             ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence               0     123455565544211    11222222222345678899999999974

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.65  E-value=2.3e-14  Score=148.69  Aligned_cols=175  Identities=13%  Similarity=0.075  Sum_probs=128.1

Q ss_pred             EEEEeCCCeEEEEeCC-CCC-----CCCCCCCeEEEEECCCCCEEEEEeCC-CeEEEEeCC--CCe--EEEEEecCCCCc
Q 004203           84 LASWVEAESLHHLRPK-YCP-----LSPPPRSTIAAAFSPDGKTLASTHGD-HTVKIIDCQ--TGS--CLKVLHGHRRTP  152 (768)
Q Consensus        84 LvSgs~DgsIrlWd~~-t~~-----L~gH~~~VtslafSPDG~~LaSgS~D-gtVrVWDl~--tg~--~l~~l~gH~g~V  152 (768)
                      +++...++.|++|++. .++     ...|...+.+++|+|||++|++++.+ +.|++|+++  +++  .+..+..+. .+
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~   86 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SL   86 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CC
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CC
Confidence            3344678999999885 221     23577789999999999999988886 999999997  555  344555444 78


Q ss_pred             EEEEEccCCCCEEEEEe-CCCeEEEEECC---CCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCC-Cccc
Q 004203          153 WVVRFHPLNPTIIASGS-LDHEVRLWNAS---TAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNM-REET  225 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS-~DgtVrLWDl~---sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t-~~~~  225 (768)
                      ..++|+| +++++++++ .++.|++||+.   +.+....+.....+.+++|+|+|++|++++  ++.|++||+.+ ++..
T Consensus        87 ~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           87 THISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             SEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             cEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            8999999 888776655 48899999994   444555566666789999999999888876  45699999987 4322


Q ss_pred             cCC--eEeecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004203          226 SSP--RIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD  260 (768)
Q Consensus       226 ~~~--~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~  260 (768)
                      ...  .........+..++|+|+|++++++..      +|+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            100  112223457899999999998877653      66664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.65  E-value=1.2e-14  Score=168.83  Aligned_cols=228  Identities=10%  Similarity=0.003  Sum_probs=153.4

Q ss_pred             EEEecCCCEEEEEeCC---------CeEEEEeCCCCC---CC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 004203           75 EAGRDARRGLASWVEA---------ESLHHLRPKYCP---LS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG  139 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~D---------gsIrlWd~~t~~---L~---gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg  139 (768)
                      .+.+.+++.|+..+.+         +.|.+||+.+++   +.   +|...+..++|||||++|++++. +.|++||+.++
T Consensus        66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g  144 (723)
T 1xfd_A           66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK  144 (723)
T ss_dssp             EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred             EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence            3444567777777654         788899998774   33   45556899999999999999987 79999999999


Q ss_pred             eEEEEEecCCCCc------------------EEEEEccCCCCEEEEEeCCC-----------------------------
Q 004203          140 SCLKVLHGHRRTP------------------WVVRFHPLNPTIIASGSLDH-----------------------------  172 (768)
Q Consensus       140 ~~l~~l~gH~g~V------------------~sVafSP~dg~lLaSgS~Dg-----------------------------  172 (768)
                      +.......+...+                  ..+.|+| |++.|++++.|+                             
T Consensus       145 ~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  223 (723)
T 1xfd_A          145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS  223 (723)
T ss_dssp             CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred             ceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCC
Confidence            8777666544434                  7899999 999999887553                             


Q ss_pred             -----eEEEEECCCCcEEEEec-C------CCCeEEEEEcCCCCEEEEEEC---C--eEEEEEcCCCccccCCeEeecCC
Q 004203          173 -----EVRLWNASTAECIGSRD-F------YRPIASIAFHASGELLAVASG---H--KLYIWRYNMREETSSPRIVLRTR  235 (768)
Q Consensus       173 -----tVrLWDl~sg~~i~~l~-h------~~~V~svafSPDG~~LatgSd---d--~I~IWDl~t~~~~~~~~~l~~h~  235 (768)
                           +|++||+.+++....+. +      ...+..++|+|||++|++.++   +  .|++||+.+++...  .....+.
T Consensus       224 ~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~--~~~~~~~  301 (723)
T 1xfd_A          224 ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK--KHEDESE  301 (723)
T ss_dssp             CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE--EEEEECS
T ss_pred             CCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE--EEEeccC
Confidence                 79999999987644443 2      457889999999999877752   1  29999998876432  1112233


Q ss_pred             CCe----EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEec-CCCCC---CCCcccccCCCCCCce
Q 004203          236 RSL----RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAG-AHSSS---HPGLAEEVPLITPPFL  307 (768)
Q Consensus       236 ~~V----~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d-~~s~d---~~~L~~~~~~~slpil  307 (768)
                      ..+    ..+.|+|||+.|++.+...+-...               ....+.+++ ...+.   ...+...    .....
T Consensus       302 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~---------------~~~~l~~~d~~~~~~~~~~~~l~~~----~~~~~  362 (723)
T 1xfd_A          302 AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG---------------KFYHITVSSSQPNSSNDNIQSITSG----DWDVT  362 (723)
T ss_dssp             SCCCCCCCCCEECTTSCSEEEEEEECCSSSS---------------CEEEEEEECSSCCSSSCCCCBSCCS----SSCEE
T ss_pred             CEEeccCCCceEcCCCCeEEEEEecccCCCc---------------ceeEEEEEeccCCCCccceeEeecC----CeEEE
Confidence            333    378999999988876332211000               001244444 22222   1122111    12233


Q ss_pred             -EEEEecCCCEEEEEecCC
Q 004203          308 -RPSFVRDDERISLQHTEH  325 (768)
Q Consensus       308 -~psFSpDG~rIv~~~~d~  325 (768)
                       .++|||||++|++...++
T Consensus       363 ~~~~~spdg~~l~~~~~~~  381 (723)
T 1xfd_A          363 KILAYDEKGNKIYFLSTED  381 (723)
T ss_dssp             EEEEEETTTTEEEEEESSS
T ss_pred             eeeEEcCCCCEEEEEEcCC
Confidence             479999999999876554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=177.82  Aligned_cols=165  Identities=13%  Similarity=0.088  Sum_probs=121.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCC---C-CCCCC---CeEEEEECCCCCEEEEEeC---------CCeEEEEeCCCCeEE--EE
Q 004203           83 GLASWVEAESLHHLRPKYCP---L-SPPPR---STIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGSCL--KV  144 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~~---L-~gH~~---~VtslafSPDG~~LaSgS~---------DgtVrVWDl~tg~~l--~~  144 (768)
                      .++..+.|+.|++||..+++   + ..|..   .|.+++|||||++|++++.         |++|++||+++++.+  ..
T Consensus        28 ~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~  107 (719)
T 1z68_A           28 EYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE  107 (719)
T ss_dssp             EEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence            34444568999999998773   2 22322   4899999999999999877         789999999999862  22


Q ss_pred             EecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCCe-----------------EEEEEcCCCCE
Q 004203          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPI-----------------ASIAFHASGEL  205 (768)
Q Consensus       145 l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~--h~~~V-----------------~svafSPDG~~  205 (768)
                      +   ...+..++||| ||+.|+++. |+.|++||+.+++......  +...+                 ..++|+|||++
T Consensus       108 l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~  182 (719)
T 1z68_A          108 L---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF  182 (719)
T ss_dssp             C---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE
T ss_pred             c---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCE
Confidence            2   24588899999 999899886 7899999999987765432  22222                 48999999999


Q ss_pred             EEEEECC-----------------------------------eEEEEEcCCCccc---c--CCeEeecCCCCeEEEEEcc
Q 004203          206 LAVASGH-----------------------------------KLYIWRYNMREET---S--SPRIVLRTRRSLRAVHFHP  245 (768)
Q Consensus       206 LatgSdd-----------------------------------~I~IWDl~t~~~~---~--~~~~l~~h~~~V~sVaFSP  245 (768)
                      |++++.+                                   .|++||+.+++..   .  .+..+..+...+..++|||
T Consensus       183 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp  262 (719)
T 1z68_A          183 LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT  262 (719)
T ss_dssp             EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS
T ss_pred             EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC
Confidence            9998732                                   5889999887642   1  0011235677899999999


Q ss_pred             CCCeEEE
Q 004203          246 HAAPLLL  252 (768)
Q Consensus       246 DG~~Lla  252 (768)
                      |++.+++
T Consensus       263 D~~~~~~  269 (719)
T 1z68_A          263 DERVCLQ  269 (719)
T ss_dssp             SSEEEEE
T ss_pred             CCeEEEE
Confidence            9764443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.64  E-value=1.5e-14  Score=168.60  Aligned_cols=226  Identities=10%  Similarity=0.100  Sum_probs=152.2

Q ss_pred             CCCeEEEEECCCCCEEEEEeC-CC-----eEEEEeCCCCeEEEEEecCCCC------------------------cEEEE
Q 004203          107 PRSTIAAAFSPDGKTLASTHG-DH-----TVKIIDCQTGSCLKVLHGHRRT------------------------PWVVR  156 (768)
Q Consensus       107 ~~~VtslafSPDG~~LaSgS~-Dg-----tVrVWDl~tg~~l~~l~gH~g~------------------------V~sVa  156 (768)
                      ...|.+++|||||++|++++. |+     +|++||+++++....+..+...                        |..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            557999999999999999998 88     9999999999988777665433                        78899


Q ss_pred             EccCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeec
Q 004203          157 FHPLNPTIIASGSLDHEVRLWNASTA---ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~sg---~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      |+| |+++|++++. +.|++||+.++   +......+...+..++|+|||++|++++++.|++||+.+++...   ....
T Consensus       116 ~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~---~~~~  190 (741)
T 2ecf_A          116 WSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ---LTAD  190 (741)
T ss_dssp             ECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE---CCCC
T ss_pred             ECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE---eccC
Confidence            999 9999999886 89999999998   66555667788999999999999999999899999998876432   1112


Q ss_pred             CCC----------------CeEEEEEccCCCeEEEEEeeCCcCC-C-------Cc--ceeE-eecCCcccCCCCeEEEec
Q 004203          234 TRR----------------SLRAVHFHPHAAPLLLTAEVNDLDS-S-------ES--SLTL-ATSPGYWRYPPPVICMAG  286 (768)
Q Consensus       234 h~~----------------~V~sVaFSPDG~~LlaS~svwdl~s-g-------~~--~~~L-~t~~G~~~~p~~~V~l~d  286 (768)
                      +..                .+..+.|||||++|+++........ .       +.  ...+ ....|. ......+.+++
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~-~~~~~~l~~~d  269 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD-ANVQVKLGVIS  269 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS-CCCEEEEEEEC
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC-CCCeeEEEEEE
Confidence            222                1478999999999888765321100 0       00  0000 000111 00112566666


Q ss_pred             CCC-CCCCCcccccCCCCCCceEEEEecCCCEEEEEec-CCCCCcceEEeccCCCc
Q 004203          287 AHS-SSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT-EHDSGATRTQQSLRSSS  340 (768)
Q Consensus       287 ~~s-~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~-d~~~Gs~~~~~~~~ss~  340 (768)
                      ... +....+... ......+..+.| |||++|++... ...........+..+..
T Consensus       270 ~~~~~~~~~~~~~-~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~  323 (741)
T 2ecf_A          270 PAEQAQTQWIDLG-KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ  323 (741)
T ss_dssp             SSTTCCCEEECCC-SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred             CCCCCceEEecCC-CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence            555 443222211 112233457999 99999998744 22222344444444443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.63  E-value=1e-13  Score=144.90  Aligned_cols=170  Identities=8%  Similarity=0.037  Sum_probs=132.4

Q ss_pred             cCCC-EEEEEeCCCeEEEEeCCCCCC----CCCCC---------CeEEEEECCCCCEEEEEe--CCCeEEEEeCCCCeEE
Q 004203           79 DARR-GLASWVEAESLHHLRPKYCPL----SPPPR---------STIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCL  142 (768)
Q Consensus        79 d~g~-~LvSgs~DgsIrlWd~~t~~L----~gH~~---------~VtslafSPDG~~LaSgS--~DgtVrVWDl~tg~~l  142 (768)
                      .+++ .+++...++.|.+||..+++.    ..+..         .+.+++|+|||+++++++  .++.|++||.++++.+
T Consensus        98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~  177 (353)
T 3vgz_A           98 NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK  177 (353)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred             CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence            4455 445556678999999987642    22221         278999999999888776  4889999999999999


Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----CCCCeEEEEEcCCCCEEEEEEC--CeEE
Q 004203          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHASGELLAVASG--HKLY  215 (768)
Q Consensus       143 ~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-----h~~~V~svafSPDG~~LatgSd--d~I~  215 (768)
                      ..+..+...+..++|+| +++.+++++.++.|.+||+.+++....+.     +...+..++|+|+|++|++++.  +.|.
T Consensus       178 ~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~  256 (353)
T 3vgz_A          178 TAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVL  256 (353)
T ss_dssp             EEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred             EEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEE
Confidence            88876667788999999 89999999999999999999998877754     3446788999999998888774  4599


Q ss_pred             EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      +||+.+++...   .+... . ...+.|+|||++++++.
T Consensus       257 ~~d~~~~~~~~---~~~~~-~-~~~~~~s~dg~~l~v~~  290 (353)
T 3vgz_A          257 VVDTRNGNILA---KVAAP-E-SLAVLFNPARNEAYVTH  290 (353)
T ss_dssp             EEETTTCCEEE---EEECS-S-CCCEEEETTTTEEEEEE
T ss_pred             EEECCCCcEEE---EEEcC-C-CceEEECCCCCEEEEEE
Confidence            99998876533   22222 2 25799999999777665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.63  E-value=3.5e-14  Score=164.88  Aligned_cols=235  Identities=14%  Similarity=0.119  Sum_probs=161.5

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCC-----CC----CCCCCCC--------------eEEEEECCCCCEEEEEe--------
Q 004203           78 RDARRGLASWVEAESLHHLRPKY-----CP----LSPPPRS--------------TIAAAFSPDGKTLASTH--------  126 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t-----~~----L~gH~~~--------------VtslafSPDG~~LaSgS--------  126 (768)
                      +.+++.|+. ..++.|.+|++.+     ++    ...+...              +.++.|||||++|++++        
T Consensus       129 SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~  207 (706)
T 2z3z_A          129 SPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKP  207 (706)
T ss_dssp             CTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCC
T ss_pred             CCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCce
Confidence            346667776 4678999999987     53    2223332              48999999999999998        


Q ss_pred             -------------------------CCCeEEEEeCCCCeEEEEEe--cCCCCcEEEEEccCCCCEEEEEeCCC-----eE
Q 004203          127 -------------------------GDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDH-----EV  174 (768)
Q Consensus       127 -------------------------~DgtVrVWDl~tg~~l~~l~--gH~g~V~sVafSP~dg~lLaSgS~Dg-----tV  174 (768)
                                               .+..|++||+++++......  .|...+..++|+| |++.|++++.|+     .|
T Consensus       208 ~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v  286 (706)
T 2z3z_A          208 TPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKV  286 (706)
T ss_dssp             EEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEE
T ss_pred             EEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEE
Confidence                                     45789999999988655443  4667789999999 999898887775     89


Q ss_pred             EEEECCCC-cEEEEec--CCC---CeEEEEEcC--CCCEEEEEECC-eEEEEEcC-CCccccCCeEeecCCCCeEE-EEE
Q 004203          175 RLWNASTA-ECIGSRD--FYR---PIASIAFHA--SGELLAVASGH-KLYIWRYN-MREETSSPRIVLRTRRSLRA-VHF  243 (768)
Q Consensus       175 rLWDl~sg-~~i~~l~--h~~---~V~svafSP--DG~~LatgSdd-~I~IWDl~-t~~~~~~~~~l~~h~~~V~s-VaF  243 (768)
                      ++||+.++ +......  ...   .+..++|+|  ||++|+++..+ .+++|+++ +++.   ...+..+...+.. +.|
T Consensus       287 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~---~~~l~~~~~~v~~~~~~  363 (706)
T 2z3z_A          287 NAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL---IRQVTKGEWEVTNFAGF  363 (706)
T ss_dssp             EEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE---EEECCCSSSCEEEEEEE
T ss_pred             EEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE---EEecCCCCeEEEeeeEE
Confidence            99999998 4333322  222   346789999  99988887754 48888776 3332   2245556777877 899


Q ss_pred             ccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          244 HPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       244 SPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                      +|||+.|++++....-.                  ...+..++...+....+.     ....+..+.|||||++|++...
T Consensus       364 spdg~~l~~~~~~~~~~------------------~~~l~~~d~~~~~~~~l~-----~~~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          364 DPKGTRLYFESTEASPL------------------ERHFYCIDIKGGKTKDLT-----PESGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             CTTSSEEEEEESSSCTT------------------CBEEEEEETTCCCCEESC-----CSSSEEEEEECTTSSEEEEEEE
T ss_pred             cCCCCEEEEEecCCCCc------------------eEEEEEEEcCCCCceecc-----CCCceEEEEECCCCCEEEEEec
Confidence            99999888776532100                  012333333332211111     1123457999999999999877


Q ss_pred             CCCCCcceEEeccCCCc
Q 004203          324 EHDSGATRTQQSLRSSS  340 (768)
Q Consensus       324 d~~~Gs~~~~~~~~ss~  340 (768)
                      +...+...+..+..+..
T Consensus       421 ~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          421 SPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CSSCSCEEEEEESSSCE
T ss_pred             CCCCCcEEEEEECCCCe
Confidence            77777777777776554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.62  E-value=9.4e-14  Score=145.24  Aligned_cols=176  Identities=12%  Similarity=0.049  Sum_probs=134.1

Q ss_pred             EEEecCCCEEEEEeC-------CCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEE
Q 004203           75 EAGRDARRGLASWVE-------AESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLK  143 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~-------DgsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~  143 (768)
                      .+...++..++....       ++.|.+||..+.+..   .....+.+++|+|||++++.+ ..++.|.+||.++++.+.
T Consensus        46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~  125 (353)
T 3vgz_A           46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKG  125 (353)
T ss_dssp             EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEE
Confidence            344456666666553       568999999877421   233457889999999966655 557999999999999888


Q ss_pred             EEecCCCC---------cEEEEEccCCCCEEEEEe--CCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC
Q 004203          144 VLHGHRRT---------PWVVRFHPLNPTIIASGS--LDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG  211 (768)
Q Consensus       144 ~l~gH~g~---------V~sVafSP~dg~lLaSgS--~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd  211 (768)
                      .+..+...         +..+.|+| ++++++.+.  .++.|++||+.+++.+..+. +...+..++|+|+|++|++++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  204 (353)
T 3vgz_A          126 RLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA  204 (353)
T ss_dssp             EEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT
T ss_pred             EEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC
Confidence            88765432         68899999 777666655  47899999999999988887 5566889999999999988885


Q ss_pred             -CeEEEEEcCCCccccCCeEee----cCCCCeEEEEEccCCCeEEEEE
Q 004203          212 -HKLYIWRYNMREETSSPRIVL----RTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       212 -d~I~IWDl~t~~~~~~~~~l~----~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                       +.|.+||+.+++...   .+.    ++...+..++|+|+|++++++.
T Consensus       205 ~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  249 (353)
T 3vgz_A          205 DGELITIDTADNKILS---RKKLLDDGKEHFFINISLDTARQRAFITD  249 (353)
T ss_dssp             TSEEEEEETTTTEEEE---EEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCeEEE---EEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence             459999999887543   222    2455688999999999877665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.62  E-value=2.3e-14  Score=169.21  Aligned_cols=170  Identities=13%  Similarity=0.076  Sum_probs=123.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CCCCCC-----CeEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCe
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP----LSPPPR-----STIAAAFSPDGKTLASTHGD---------HTVKIIDCQTGS  140 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~-----~VtslafSPDG~~LaSgS~D---------gtVrVWDl~tg~  140 (768)
                      .++..+++.  |+.|++||..+++    +.+|..     ...++.|||||++|++++.+         +.+++||+++++
T Consensus        26 ~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~  103 (740)
T 4a5s_A           26 SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ  103 (740)
T ss_dssp             SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc
Confidence            345666665  8999999998773    344443     23458999999999999886         567799999998


Q ss_pred             EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCCe-----------------EEEEEcC
Q 004203          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPI-----------------ASIAFHA  201 (768)
Q Consensus       141 ~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~--h~~~V-----------------~svafSP  201 (768)
                      .. .+..|.+.+..++||| ||+.||++. |+.|++||+.+++..+...  +...+                 ..+.|+|
T Consensus       104 ~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp  180 (740)
T 4a5s_A          104 LI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP  180 (740)
T ss_dssp             EC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT
T ss_pred             EE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC
Confidence            54 4667778899999999 999898885 6899999999887655432  22222                 3589999


Q ss_pred             CCCEEEEEE-C-C-----------------------------------eEEEEEcCC---CccccCCeEee------cCC
Q 004203          202 SGELLAVAS-G-H-----------------------------------KLYIWRYNM---REETSSPRIVL------RTR  235 (768)
Q Consensus       202 DG~~LatgS-d-d-----------------------------------~I~IWDl~t---~~~~~~~~~l~------~h~  235 (768)
                      ||+.|++.+ + .                                   +|++||+.+   ++... ...+.      ++.
T Consensus       181 Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~  259 (740)
T 4a5s_A          181 NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT-SIQITAPASMLIGD  259 (740)
T ss_dssp             TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC-EEEECCCHHHHTSC
T ss_pred             CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce-EEEecCCccCCCCC
Confidence            999999875 1 1                                   377888877   52111 11222      266


Q ss_pred             CCeEEEEEccCCCeEEEEE
Q 004203          236 RSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       236 ~~V~sVaFSPDG~~LlaS~  254 (768)
                      ..+..++|+|||+.++...
T Consensus       260 ~~~~~~~wspdg~~~~~~~  278 (740)
T 4a5s_A          260 HYLCDVTWATQERISLQWL  278 (740)
T ss_dssp             EEEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEEEeCCCeEEEEEe
Confidence            7799999999999665443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.61  E-value=8.1e-14  Score=147.08  Aligned_cols=174  Identities=11%  Similarity=0.098  Sum_probs=120.2

Q ss_pred             cCCCEEEEEeC---CCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC-CCe--EEEEE
Q 004203           79 DARRGLASWVE---AESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQ-TGS--CLKVL  145 (768)
Q Consensus        79 d~g~~LvSgs~---DgsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~-tg~--~l~~l  145 (768)
                      .+++ |+..+.   ++.|.+|++..++      +..+...+..++|+|||++|++++ .++.|++||+. +++  .+..+
T Consensus        49 pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~  127 (347)
T 3hfq_A           49 AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTV  127 (347)
T ss_dssp             TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             cCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeeccee
Confidence            3444 554443   5889999987553      234677889999999999999888 68999999995 333  33333


Q ss_pred             ecC---------CCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CCcEEEE--e--cCCCCeEEEEEcCCCCEEEEEE-
Q 004203          146 HGH---------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGS--R--DFYRPIASIAFHASGELLAVAS-  210 (768)
Q Consensus       146 ~gH---------~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-sg~~i~~--l--~h~~~V~svafSPDG~~LatgS-  210 (768)
                      ...         ...+..++|+| +++++++...++.|++||+. +++....  +  ........++|+|||++|++++ 
T Consensus       128 ~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  206 (347)
T 3hfq_A          128 QHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE  206 (347)
T ss_dssp             ECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             ecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC
Confidence            221         12478899999 77777777778899999998 5554322  1  2334678899999999888776 


Q ss_pred             -CCeEEEEEcCC--CccccCCeEeecCC------CCeEEEEEccCCCeEEEEEe
Q 004203          211 -GHKLYIWRYNM--REETSSPRIVLRTR------RSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       211 -dd~I~IWDl~t--~~~~~~~~~l~~h~------~~V~sVaFSPDG~~LlaS~s  255 (768)
                       ++.|++|+++.  ++... ........      ..+..++|+|||++|+++..
T Consensus       207 ~~~~v~v~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~  259 (347)
T 3hfq_A          207 LSSQIASLKYDTQTGAFTQ-LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR  259 (347)
T ss_dssp             TTTEEEEEEEETTTTEEEE-EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEEecCCCCceEE-eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence             34599999985  32211 11111111      45889999999998866554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.61  E-value=1e-13  Score=143.42  Aligned_cols=141  Identities=15%  Similarity=0.167  Sum_probs=113.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCC----C-CCCC-CeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCeEEEEEecC-----C
Q 004203           82 RGLASWVEAESLHHLRPKYCPL----S-PPPR-STIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGH-----R  149 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~L----~-gH~~-~VtslafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH-----~  149 (768)
                      ..+++...++.|.+||..+++.    . ++.. .+..++|+|||++++ ++..++.|++||+.+++.+..+...     .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4678889999999999987632    1 2222 588999999998765 4556889999999999988777532     1


Q ss_pred             CCcEEEEEccCCCCEEEEEe------------CCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEE
Q 004203          150 RTPWVVRFHPLNPTIIASGS------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIW  217 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS------------~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IW  217 (768)
                      ..+..++|+| ++++++++.            .++.|++||+.+++.+..+.....+..++|+|||++|+++ ++.|++|
T Consensus        82 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~  159 (337)
T 1pby_B           82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVM  159 (337)
T ss_dssp             ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEE
T ss_pred             ccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEE
Confidence            2577899999 888888876            5799999999999888887766778889999999988887 6679999


Q ss_pred             EcCCCcc
Q 004203          218 RYNMREE  224 (768)
Q Consensus       218 Dl~t~~~  224 (768)
                      |+.+++.
T Consensus       160 d~~~~~~  166 (337)
T 1pby_B          160 DPEAGTL  166 (337)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCcE
Confidence            9988764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.61  E-value=1.4e-14  Score=161.53  Aligned_cols=148  Identities=10%  Similarity=0.009  Sum_probs=121.6

Q ss_pred             EEEEecCCCEEE----EEeCCCeEEEEeCCCC---------------CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q 004203           74 FEAGRDARRGLA----SWVEAESLHHLRPKYC---------------PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKI  133 (768)
Q Consensus        74 ~~a~~d~g~~Lv----Sgs~DgsIrlWd~~t~---------------~L~gH~~~VtslafSPD-G~~LaSgS~DgtVrV  133 (768)
                      ..+...++..|+    +++.|+.|++||+.+.               .+.+|...|.+++|+|+ +++|++++.|++|++
T Consensus        97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~i  176 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAV  176 (434)
T ss_dssp             EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEE
Confidence            344556677888    7889999999997532               35579999999999997 899999999999999


Q ss_pred             EeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-C-------CCCeEEEEEcCCCCE
Q 004203          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-F-------YRPIASIAFHASGEL  205 (768)
Q Consensus       134 WDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h-------~~~V~svafSPDG~~  205 (768)
                      ||++++..+....+|...|.+++|+| ++++|++|+.|++|++||++ ++....+. +       ...+.+++|++++.+
T Consensus       177 wD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~  254 (434)
T 2oit_A          177 LQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF  254 (434)
T ss_dssp             EEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred             EEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence            99999987777788999999999999 89999999999999999998 55554432 1       237899999999988


Q ss_pred             EEEEE--CC------eEEEEEcCCCc
Q 004203          206 LAVAS--GH------KLYIWRYNMRE  223 (768)
Q Consensus       206 LatgS--dd------~I~IWDl~t~~  223 (768)
                      +++.+  +|      .+++||+++.+
T Consensus       255 l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          255 AIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             EEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             EEEEccCCCccCCCCceEEEEeccCC
Confidence            76554  22      29999998764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.59  E-value=2.3e-13  Score=141.82  Aligned_cols=178  Identities=12%  Similarity=0.101  Sum_probs=128.5

Q ss_pred             EEEEecCCCEEEEEeC-CCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeCCCCeEEEE
Q 004203           74 FEAGRDARRGLASWVE-AESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDH---TVKIIDCQTGSCLKV  144 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs~-DgsIrlWd~~t~~L-----~gH~~~VtslafSPDG~~LaSgS~Dg---tVrVWDl~tg~~l~~  144 (768)
                      ..+...++..++.... ++.|.+||..++++     ..+...+.+++|+|||++|+++..++   .|++||+++++.+..
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence            3444455665555544 88999999987754     24455555599999999999555553   999999999998888


Q ss_pred             EecCCCCcEEEEEccCCCC-EEEEEeCCCe-EEEEECCCCcEE-----EEecCCCCeEEEEEcCCCCEEEEEE--CCeEE
Q 004203          145 LHGHRRTPWVVRFHPLNPT-IIASGSLDHE-VRLWNASTAECI-----GSRDFYRPIASIAFHASGELLAVAS--GHKLY  215 (768)
Q Consensus       145 l~gH~g~V~sVafSP~dg~-lLaSgS~Dgt-VrLWDl~sg~~i-----~~l~h~~~V~svafSPDG~~LatgS--dd~I~  215 (768)
                      +..+ ..+..++|+| +++ ++++...++. |++|++.....+     ..+........++|+|||++|++++  ++.|+
T Consensus       124 ~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  201 (331)
T 3u4y_A          124 IPIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIG  201 (331)
T ss_dssp             EECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EECC-CCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEE
Confidence            7754 4578999999 766 5555566688 999999864332     2234456688999999999877776  34599


Q ss_pred             EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      +||+.+++... ..........+..++|+|||++++++.
T Consensus       202 v~d~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~v~~  239 (331)
T 3u4y_A          202 ILETQNPENIT-LLNAVGTNNLPGTIVVSRDGSTVYVLT  239 (331)
T ss_dssp             EEECSSTTSCE-EEEEEECSSCCCCEEECTTSSEEEEEC
T ss_pred             EEECCCCcccc-eeeeccCCCCCceEEECCCCCEEEEEE
Confidence            99998776511 012333457788999999999777654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.59  E-value=3.3e-14  Score=165.11  Aligned_cols=168  Identities=14%  Similarity=0.143  Sum_probs=124.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-----CeEEEEEecCCCC--
Q 004203           82 RGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSCLKVLHGHRRT--  151 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-----g~~l~~l~gH~g~--  151 (768)
                      +.++.. .++.|++||+.+++   +..+...+.+++|||||++|+++ .|+.|++||+.+     ++.......+...  
T Consensus        93 ~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~  170 (706)
T 2z3z_A           93 GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV  170 (706)
T ss_dssp             TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred             CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence            444433 35999999998773   45677889999999999999985 679999999998     8766555444332  


Q ss_pred             ------------cEEEEEccCCCCEEEEEe---------------------------------CCCeEEEEECCCCcEEE
Q 004203          152 ------------PWVVRFHPLNPTIIASGS---------------------------------LDHEVRLWNASTAECIG  186 (768)
Q Consensus       152 ------------V~sVafSP~dg~lLaSgS---------------------------------~DgtVrLWDl~sg~~i~  186 (768)
                                  +..+.|+| |+++|++++                                 .+..|++||+.+++...
T Consensus       171 ~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~  249 (706)
T 2z3z_A          171 YGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY  249 (706)
T ss_dssp             ESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred             cccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence                        47899999 999999987                                 44689999999988765


Q ss_pred             Ee---cCCCCeEEEEEcCCCCEEEEEE-CC-----eEEEEEcCCCccccCCeEeecCCC---CeEEEEEcc--CCCeEEE
Q 004203          187 SR---DFYRPIASIAFHASGELLAVAS-GH-----KLYIWRYNMREETSSPRIVLRTRR---SLRAVHFHP--HAAPLLL  252 (768)
Q Consensus       187 ~l---~h~~~V~svafSPDG~~LatgS-dd-----~I~IWDl~t~~~~~~~~~l~~h~~---~V~sVaFSP--DG~~Lla  252 (768)
                      ..   .+...+..++|+|||++|++++ +.     .|++||+.+++... ......+..   .+..+.|+|  ||+++++
T Consensus       250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~  328 (706)
T 2z3z_A          250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR-TLFVETDKHYVEPLHPLTFLPGSNNQFIWQ  328 (706)
T ss_dssp             CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE-EEEEEECSSCCCCCSCCEECTTCSSEEEEE
T ss_pred             eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee-EEEEccCCCeECccCCceeecCCCCEEEEE
Confidence            54   3556789999999999888876 33     59999998873322 111112222   346789999  9985544


Q ss_pred             E
Q 004203          253 T  253 (768)
Q Consensus       253 S  253 (768)
                      +
T Consensus       329 ~  329 (706)
T 2z3z_A          329 S  329 (706)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.58  E-value=5.9e-13  Score=141.89  Aligned_cols=172  Identities=10%  Similarity=-0.019  Sum_probs=127.5

Q ss_pred             cCCCEEEEEeC-CC--eEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203           79 DARRGLASWVE-AE--SLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (768)
Q Consensus        79 d~g~~LvSgs~-Dg--sIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~  151 (768)
                      .+++.|+..+. ++  .|.+||+.+++    ..++...+..+.|+|||++|++++.++.|++||+.+++....+..+.+.
T Consensus        45 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~  124 (388)
T 3pe7_A           45 RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEW  124 (388)
T ss_dssp             TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE
T ss_pred             CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhc
Confidence            35555555555 55  47888887762    3345555557889999999999999999999999999988777777665


Q ss_pred             cEEEEE--ccCCCCEEEEEe----------------------CCCeEEEEECCCCcEEEEecCCCCeEEEEEcC-CCCEE
Q 004203          152 PWVVRF--HPLNPTIIASGS----------------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELL  206 (768)
Q Consensus       152 V~sVaf--SP~dg~lLaSgS----------------------~DgtVrLWDl~sg~~i~~l~h~~~V~svafSP-DG~~L  206 (768)
                      +....|  +| ++.+++...                      .+..|++||+.+++......+...+..++|+| ||+.|
T Consensus       125 ~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l  203 (388)
T 3pe7_A          125 VGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTV  203 (388)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEE
T ss_pred             ccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEE
Confidence            544444  78 888877432                      34689999999998877777778899999999 99999


Q ss_pred             EEEECC-------eEEEEEcCCCccccCCeEeecCC--CCeEEEEEccCCCeEEEEEe
Q 004203          207 AVASGH-------KLYIWRYNMREETSSPRIVLRTR--RSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       207 atgSdd-------~I~IWDl~t~~~~~~~~~l~~h~--~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++.+.+       .|+++|+......    .+..+.  ..+..+.|+|||+.|++.+.
T Consensus       204 ~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          204 AFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             EEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCCcccccceECCCCCEEEEEec
Confidence            887742       3888887665432    233333  35788999999998876543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.57  E-value=2.6e-14  Score=166.61  Aligned_cols=176  Identities=10%  Similarity=0.073  Sum_probs=126.8

Q ss_pred             EEecCCCEEEEEeC---------CCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 004203           76 AGRDARRGLASWVE---------AESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK  143 (768)
Q Consensus        76 a~~d~g~~LvSgs~---------DgsIrlWd~~t~~L---~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~  143 (768)
                      +.+.+++.|+..+.         ++.|++||+.+++.   ......+..++|||||++|+++. |++|++||+.+++...
T Consensus        66 ~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~  144 (719)
T 1z68_A           66 GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ  144 (719)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred             EECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE
Confidence            34456777776655         68999999988765   44556799999999999999886 7899999999887654


Q ss_pred             EE-ecCCCCc-----------------EEEEEccCCCCEEEEEeCCC---------------------------------
Q 004203          144 VL-HGHRRTP-----------------WVVRFHPLNPTIIASGSLDH---------------------------------  172 (768)
Q Consensus       144 ~l-~gH~g~V-----------------~sVafSP~dg~lLaSgS~Dg---------------------------------  172 (768)
                      .. .++...|                 ..+.||| |++.|++++.|.                                 
T Consensus       145 l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~  223 (719)
T 1z68_A          145 ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPV  223 (719)
T ss_dssp             CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCE
T ss_pred             EecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCe
Confidence            33 2322222                 4799999 999999987652                                 


Q ss_pred             -eEEEEECCCCcEE---EE------ecCCCCeEEEEEcCCCCEEEEEECC-----eEEEEE----cCCCccccCCe-Eee
Q 004203          173 -EVRLWNASTAECI---GS------RDFYRPIASIAFHASGELLAVASGH-----KLYIWR----YNMREETSSPR-IVL  232 (768)
Q Consensus       173 -tVrLWDl~sg~~i---~~------l~h~~~V~svafSPDG~~LatgSdd-----~I~IWD----l~t~~~~~~~~-~l~  232 (768)
                       +|++||+.+++..   ..      ..+...+..++|+||++++++..+.     .|++||    +.+++...... ...
T Consensus       224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~  303 (719)
T 1z68_A          224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEE  303 (719)
T ss_dssp             EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEE
T ss_pred             eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccc
Confidence             7899999988752   21      1366678999999998877775421     288999    66665432110 003


Q ss_pred             cCCCCeE-----EEEEccCCCeEEEE
Q 004203          233 RTRRSLR-----AVHFHPHAAPLLLT  253 (768)
Q Consensus       233 ~h~~~V~-----sVaFSPDG~~LlaS  253 (768)
                      .+...+.     .+.|+|||+.+++.
T Consensus       304 ~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          304 SRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             CSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             cCCceEccccCCccEECCCCCeEEEE
Confidence            5566666     88999999977663

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.55  E-value=5.2e-13  Score=163.60  Aligned_cols=169  Identities=10%  Similarity=0.012  Sum_probs=142.9

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---CCCCCCC-CeEEEEECCCCCEEEEEeCCCeEE-EEeCCCCeEEEEEecCCCCcE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC---PLSPPPR-STIAAAFSPDGKTLASTHGDHTVK-IIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~-~VtslafSPDG~~LaSgS~DgtVr-VWDl~tg~~l~~l~gH~g~V~  153 (768)
                      .++..|+..+ ++.|.+|+...+   .+..|.. .+..++|+ ||+.|++++.+..++ +||+.+++... +.+|...+.
T Consensus       306 pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~  382 (1045)
T 1k32_A          306 LDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVF  382 (1045)
T ss_dssp             CGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEE
T ss_pred             CCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCcccee
Confidence            5566666666 788999998866   3667887 89999999 999999999998999 99998877544 448888899


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC-C----------eEEEEEcCC
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG-H----------KLYIWRYNM  221 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSd-d----------~I~IWDl~t  221 (768)
                      .++|+| |+++|++++.++.|++||+.+++..... .+...+..++|+|||++|++++. +          .|++||+.+
T Consensus       383 ~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          383 AMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             eeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            999999 9999999999999999999999888776 68888999999999999988763 3          499999988


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++.    ..+..+...+..+.|+|||++|++.+.
T Consensus       462 g~~----~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          462 RKI----FAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             TEE----EECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             CcE----EEeeCCCcccCCceEcCCCCEEEEEec
Confidence            752    245667788999999999998888765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.55  E-value=4.8e-13  Score=139.34  Aligned_cols=143  Identities=13%  Similarity=0.078  Sum_probs=110.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CCCCC-CCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCeEEEEEecCC---
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP----LSPPP-RSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHR---  149 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~-~~VtslafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~---  149 (768)
                      .++..+++...++.|.+||..+++    +..+. ..+..++|+|||++++ +...++.|++||+++++.+..+..+.   
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~   88 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG   88 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence            466778889999999999998763    22222 2578999999998765 44568999999999999887776432   


Q ss_pred             ---CCcEEEEEccCCCCEEEEEeCC------------CeEEEEECCCCcE---EEEecCCCCeEEEEEcCCCCEEEEEEC
Q 004203          150 ---RTPWVVRFHPLNPTIIASGSLD------------HEVRLWNASTAEC---IGSRDFYRPIASIAFHASGELLAVASG  211 (768)
Q Consensus       150 ---g~V~sVafSP~dg~lLaSgS~D------------gtVrLWDl~sg~~---i~~l~h~~~V~svafSPDG~~LatgSd  211 (768)
                         ..+..++|+| +++++++++.+            +.|++||+.+++.   +..+.+...+.+++|+|||+ ++++ +
T Consensus        89 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~  165 (349)
T 1jmx_B           89 EVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA-G  165 (349)
T ss_dssp             EEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE-S
T ss_pred             cccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEc-c
Confidence               2378899999 88888888865            8999999998543   34455666788999999999 5554 4


Q ss_pred             CeEEEEEcCCCcc
Q 004203          212 HKLYIWRYNMREE  224 (768)
Q Consensus       212 d~I~IWDl~t~~~  224 (768)
                      +.|++||+.+++.
T Consensus       166 ~~i~~~d~~~~~~  178 (349)
T 1jmx_B          166 PDIYKMDVKTGKY  178 (349)
T ss_dssp             SSEEEECTTTCCE
T ss_pred             CcEEEEeCCCCce
Confidence            4599999987764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.54  E-value=2.3e-13  Score=160.69  Aligned_cols=225  Identities=8%  Similarity=0.042  Sum_probs=146.7

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc-----EEEEEccCCCCEEEEEeCC---------CeE
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP-----WVVRFHPLNPTIIASGSLD---------HEV  174 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V-----~sVafSP~dg~lLaSgS~D---------gtV  174 (768)
                      ....+.|+|||++|+++  |++|++||+.++++...+.+|....     ..+.||| |++.|++++.+         +.+
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEE
Confidence            35588999999999886  9999999999999988888876432     3478999 99999998876         567


Q ss_pred             EEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCe----------------
Q 004203          175 RLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSL----------------  238 (768)
Q Consensus       175 rLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V----------------  238 (768)
                      ++||+.+++......+...+...+|+|||+.||++.++.|++||+.+++....  ...++...+                
T Consensus        95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~l--t~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRI--TWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEEC--CSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEE--cCCCCccceecCcccccccchhcCC
Confidence            79999999877666677889999999999999999999999999987764321  111222222                


Q ss_pred             -EEEEEccCCCeEEEEEeeCC-cCCC----------CcceeEe---ecCCcccCCCCeEEEecCCC---CCCCCcccccC
Q 004203          239 -RAVHFHPHAAPLLLTAEVND-LDSS----------ESSLTLA---TSPGYWRYPPPVICMAGAHS---SSHPGLAEEVP  300 (768)
Q Consensus       239 -~sVaFSPDG~~LlaS~svwd-l~sg----------~~~~~L~---t~~G~~~~p~~~V~l~d~~s---~d~~~L~~~~~  300 (768)
                       ..+.|||||++|++...... ++.+          .......   ...|. ..+...+.+++...   +..........
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~-~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA-VNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS-CCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC-cCCeeEEEEEECCCCCCCCcceEEEecC
Confidence             35899999998888764221 1100          0000000   01111 01112466777666   42211111111


Q ss_pred             -----CCCCCceEEEEecCCCEEEEEecCCCCCcceEEeccCCC
Q 004203          301 -----LITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSS  339 (768)
Q Consensus       301 -----~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss  339 (768)
                           +...-+..++|||||+.+++..+.......+...+..+.
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg  295 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES  295 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence                 112224479999999977776554433334555555443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.53  E-value=6.5e-13  Score=137.34  Aligned_cols=167  Identities=17%  Similarity=0.125  Sum_probs=120.8

Q ss_pred             cCCCE-EEEEeCCCeEEEEeCCCCCCC-----CC----CCCeEEEEECCCCCEEEEEe------------CCCeEEEEeC
Q 004203           79 DARRG-LASWVEAESLHHLRPKYCPLS-----PP----PRSTIAAAFSPDGKTLASTH------------GDHTVKIIDC  136 (768)
Q Consensus        79 d~g~~-LvSgs~DgsIrlWd~~t~~L~-----gH----~~~VtslafSPDG~~LaSgS------------~DgtVrVWDl  136 (768)
                      .++.. +++...++.|.+||..+++..     ++    ...+.+++|+|||++|+++.            .++.|++||+
T Consensus        43 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~  122 (337)
T 1pby_B           43 PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA  122 (337)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEEC
Confidence            34444 456666889999999876321     11    22677899999999999886            5799999999


Q ss_pred             CCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-------------------------
Q 004203          137 QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-------------------------  191 (768)
Q Consensus       137 ~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~-------------------------  191 (768)
                      ++++.+..+.. ...+..++|+| ++++++++  ++.|++||+.+++....+...                         
T Consensus       123 ~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  198 (337)
T 1pby_B          123 ETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVM  198 (337)
T ss_dssp             TTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEE
T ss_pred             CCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCce
Confidence            99998887765 45578899999 88877776  688999999988776544211                         


Q ss_pred             ------------------------------------------CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCe
Q 004203          192 ------------------------------------------RPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPR  229 (768)
Q Consensus       192 ------------------------------------------~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~  229 (768)
                                                                ..+..++|+|||++|+++ ++.|++||+.+++...   
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~---  274 (337)
T 1pby_B          199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIK---  274 (337)
T ss_dssp             EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEE---
T ss_pred             eeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcc---
Confidence                                                      123357888888887777 5668888887765432   


Q ss_pred             EeecCCCCeEEEEEccCCCeEEEEE
Q 004203          230 IVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       230 ~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                       .......+.+++|+|||+++++++
T Consensus       275 -~~~~~~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          275 -RVPLPHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             -EEECSSCCCEEEECTTSCEEEEES
T ss_pred             -eecCCCceeeEEECCCCCEEEEEc
Confidence             222335677888888888776653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.53  E-value=2.2e-12  Score=133.69  Aligned_cols=175  Identities=11%  Similarity=0.091  Sum_probs=124.4

Q ss_pred             EEecCCCEEEEEeCC-CeEEEEeCC--CCC------CCCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCC---CCeEE
Q 004203           76 AGRDARRGLASWVEA-ESLHHLRPK--YCP------LSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQ---TGSCL  142 (768)
Q Consensus        76 a~~d~g~~LvSgs~D-gsIrlWd~~--t~~------L~gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~---tg~~l  142 (768)
                      +...++..|+.+..+ +.|.+|++.  +++      +..+ ..+..++|+|||++|++++. ++.|++||+.   +++.+
T Consensus        44 ~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~  122 (343)
T 1ri6_A           44 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV  122 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             EECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc
Confidence            344567777777766 899999987  432      2223 37899999999998877765 8899999994   44455


Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCC-CcEEE----E--ecCCCCeEEEEEcCCCCEEEEEE--CC
Q 004203          143 KVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNAST-AECIG----S--RDFYRPIASIAFHASGELLAVAS--GH  212 (768)
Q Consensus       143 ~~l~gH~g~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~s-g~~i~----~--l~h~~~V~svafSPDG~~LatgS--dd  212 (768)
                      ..+..+ ..+..++|+| +++++++++ .|+.|++||+.+ ++...    .  ......+..++|+|+|++|++++  ++
T Consensus       123 ~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~  200 (343)
T 1ri6_A          123 DVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS  200 (343)
T ss_dssp             EEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             ccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC
Confidence            555544 4588899999 888777776 899999999987 65432    1  22345788999999999887766  45


Q ss_pred             eEEEEEcCC--CccccCCeEee------cCCCCeEEEEEccCCCeEEEEE
Q 004203          213 KLYIWRYNM--REETSSPRIVL------RTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       213 ~I~IWDl~t--~~~~~~~~~l~------~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      .|++||++.  ++... .....      .....+..++|+|+|++++++.
T Consensus       201 ~i~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~  249 (343)
T 1ri6_A          201 SVDVWELKDPHGNIEC-VQTLDMMPENFSDTRWAADIHITPDGRHLYACD  249 (343)
T ss_dssp             EEEEEESSCTTSCCEE-EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEEecCCCCcEEE-EeeccccCccccccCCccceEECCCCCEEEEEe
Confidence            599999964  22110 00111      1134677899999999887665

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.53  E-value=2.9e-13  Score=165.80  Aligned_cols=139  Identities=11%  Similarity=0.011  Sum_probs=116.7

Q ss_pred             CCCEEEEEeCCCeEE-EEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLH-HLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIr-lWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ++..|+..+.+..+. +|+...+   .+.+|...+..++|||||++|++++.++.|++||+++++....+.+|.+.+..+
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~  426 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  426 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence            445677777777788 8898765   355788899999999999999999999999999999999888888899999999


Q ss_pred             EEccCCCCEEEEEeCCC----------eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEc
Q 004203          156 RFHPLNPTIIASGSLDH----------EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRY  219 (768)
Q Consensus       156 afSP~dg~lLaSgS~Dg----------tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl  219 (768)
                      +|+| |+++|++++.++          .|++||+.+++......+...+..++|+|||++|++.+++ ...+|+.
T Consensus       427 ~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          427 TISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             EECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             EECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence            9999 999888877654          8999999998855555677788899999999999998853 3555553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.51  E-value=1.1e-12  Score=138.50  Aligned_cols=148  Identities=11%  Similarity=0.143  Sum_probs=104.0

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCe--EEEEEecCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEE
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWN  178 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~---DgtVrVWDl~tg~--~l~~l~gH~g~V~sVafSP~dg~lLaSgS-~DgtVrLWD  178 (768)
                      .+...+..++|+|||+ |++++.   ++.|++||+.+++  .+..+..+...+..++|+| ++++|++++ .+++|.+||
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEE
Confidence            4556788899999999 665554   6899999998776  3445556777889999999 888888877 688999999


Q ss_pred             CC-CCcE--EEEecCC----------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcC-CCccccCCeEeecCCCCeEEEEE
Q 004203          179 AS-TAEC--IGSRDFY----------RPIASIAFHASGELLAVAS-GHKLYIWRYN-MREETSSPRIVLRTRRSLRAVHF  243 (768)
Q Consensus       179 l~-sg~~--i~~l~h~----------~~V~svafSPDG~~LatgS-dd~I~IWDl~-t~~~~~~~~~l~~h~~~V~sVaF  243 (768)
                      +. +++.  +..+.+.          ..+.+++|+|||+++++.. ++.|++||+. +++..............+..++|
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            96 3332  3333222          2478899999999444433 3459999998 33321101111223346889999


Q ss_pred             ccCCCeEEEEE
Q 004203          244 HPHAAPLLLTA  254 (768)
Q Consensus       244 SPDG~~LlaS~  254 (768)
                      +|||++++++.
T Consensus       195 spdg~~l~v~~  205 (347)
T 3hfq_A          195 SPDGQYAFLAG  205 (347)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCEEEEEe
Confidence            99999777765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.50  E-value=3.5e-13  Score=153.46  Aligned_cols=166  Identities=11%  Similarity=0.061  Sum_probs=119.3

Q ss_pred             EecCCCEEEEEeC-CCeEEEEeCCCC---CCCCCC-CCeEEEEECCCCCEEEEEeC---CCeEEEEeCCC---CeEEEEE
Q 004203           77 GRDARRGLASWVE-AESLHHLRPKYC---PLSPPP-RSTIAAAFSPDGKTLASTHG---DHTVKIIDCQT---GSCLKVL  145 (768)
Q Consensus        77 ~~d~g~~LvSgs~-DgsIrlWd~~t~---~L~gH~-~~VtslafSPDG~~LaSgS~---DgtVrVWDl~t---g~~l~~l  145 (768)
                      ...+++.|+..+. |+++++|++..+   ++..|. ..+..++|||| +++++++.   +...++|.++.   +... .+
T Consensus        29 ~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l  106 (582)
T 3o4h_A           29 GVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RL  106 (582)
T ss_dssp             EEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-EC
T ss_pred             cCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cc
Confidence            3457778887776 999999998765   455666 68999999999 78887765   45455554432   3323 44


Q ss_pred             ecCCCCcEEEEEccCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC-----eEEEEEc
Q 004203          146 HGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY  219 (768)
Q Consensus       146 ~gH~g~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd-----~I~IWDl  219 (768)
                      .... .+...+|+| +++ ++++...++.+.|||+.+++......+..  .+++|+|||++|++++.+     .|++||+
T Consensus       107 ~~~~-~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~  182 (582)
T 3o4h_A          107 EAVK-PMRILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL  182 (582)
T ss_dssp             TTSC-SBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred             cCCC-CceeeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC
Confidence            3332 355678999 554 44444444455699999998776665544  889999999999977743     3999999


Q ss_pred             CCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                      .+++.    ..+..+...+..++|||||++|+.
T Consensus       183 ~~g~~----~~l~~~~~~~~~~~~SpDG~~l~~  211 (582)
T 3o4h_A          183 SSGGL----RVFDSGEGSFSSASISPGMKVTAG  211 (582)
T ss_dssp             TTCCC----EEECCSSCEEEEEEECTTSCEEEE
T ss_pred             CCCCc----eEeecCCCccccceECCCCCEEEE
Confidence            88764    246677888999999999998873

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.49  E-value=1.9e-12  Score=137.86  Aligned_cols=216  Identities=12%  Similarity=0.073  Sum_probs=143.3

Q ss_pred             CCCCCCCeEE-----EEECCCCCEEEEEeC-CC--eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 004203          103 LSPPPRSTIA-----AAFSPDGKTLASTHG-DH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV  174 (768)
Q Consensus       103 L~gH~~~Vts-----lafSPDG~~LaSgS~-Dg--tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtV  174 (768)
                      +..|......     .+|||||++|+.++. ++  .|++||+++++......++...+..+.|+| |++.|++++.++.|
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l  104 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNL  104 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEE
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeE
Confidence            4556655555     889999999999887 66  499999999998877777776666678999 99999999999999


Q ss_pred             EEEECCCCcEEEEecCCC-CeEEE--EEcCCCCEEEEEE-----------------------CCeEEEEEcCCCccccCC
Q 004203          175 RLWNASTAECIGSRDFYR-PIASI--AFHASGELLAVAS-----------------------GHKLYIWRYNMREETSSP  228 (768)
Q Consensus       175 rLWDl~sg~~i~~l~h~~-~V~sv--afSPDG~~LatgS-----------------------dd~I~IWDl~t~~~~~~~  228 (768)
                      ++||+.+++....+.... .+...  .++||+++++...                       +..|++||+.+++..   
T Consensus       105 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~---  181 (388)
T 3pe7_A          105 MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST---  181 (388)
T ss_dssp             EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE---
T ss_pred             EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE---
Confidence            999999998876655433 33333  3489999887432                       134999999887542   


Q ss_pred             eEeecCCCCeEEEEEcc-CCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce
Q 004203          229 RIVLRTRRSLRAVHFHP-HAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (768)
Q Consensus       229 ~~l~~h~~~V~sVaFSP-DG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil  307 (768)
                       .+..+...+..+.|+| ||+.|++..... -...                ...+.+.+........+.....  ...+.
T Consensus       182 -~l~~~~~~~~~~~~sp~dg~~l~~~~~~~-~~~~----------------~~~l~~~d~~~~~~~~l~~~~~--~~~~~  241 (388)
T 3pe7_A          182 -VILQENQWLGHPIYRPYDDSTVAFCHEGP-HDLV----------------DARMWLINEDGTNMRKVKTHAE--GESCT  241 (388)
T ss_dssp             -EEEEESSCEEEEEEETTEEEEEEEEECSC-TTTS----------------SCSEEEEETTSCCCEESCCCCT--TEEEE
T ss_pred             -EeecCCccccccEECCCCCCEEEEEEecC-CCCC----------------cceEEEEeCCCCceEEeeeCCC--Ccccc
Confidence             3556677899999999 999887776411 0000                1123333332222222211100  01234


Q ss_pred             EEEEecCCCEEEEEecCCCCC-cceEEeccCCCcee
Q 004203          308 RPSFVRDDERISLQHTEHDSG-ATRTQQSLRSSSSV  342 (768)
Q Consensus       308 ~psFSpDG~rIv~~~~d~~~G-s~~~~~~~~ss~~~  342 (768)
                      .|.|||||++|++........ ..++..+..+...+
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~  277 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR  277 (388)
T ss_dssp             EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred             cceECCCCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence            789999999998864432211 12555555544433

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.46  E-value=1.5e-12  Score=135.65  Aligned_cols=167  Identities=13%  Similarity=0.117  Sum_probs=121.3

Q ss_pred             ecCCCE-EEEEeCCCeEEEEeCCCCCC----C-CC-----CCCeEEEEECCCCCEEEEEeCC------------CeEEEE
Q 004203           78 RDARRG-LASWVEAESLHHLRPKYCPL----S-PP-----PRSTIAAAFSPDGKTLASTHGD------------HTVKII  134 (768)
Q Consensus        78 ~d~g~~-LvSgs~DgsIrlWd~~t~~L----~-gH-----~~~VtslafSPDG~~LaSgS~D------------gtVrVW  134 (768)
                      ..+++. +++...++.|.+||..+++.    . .+     ...+.+++|+|||++|++++.+            +.|++|
T Consensus        51 s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~  130 (349)
T 1jmx_B           51 APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF  130 (349)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEE
Confidence            344554 45556788999999987632    1 22     2337899999999999999865            899999


Q ss_pred             eCCCCe---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-------------------
Q 004203          135 DCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-------------------  192 (768)
Q Consensus       135 Dl~tg~---~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~-------------------  192 (768)
                      |+++++   .+..+..+. .+.+++|+| +++ ++.++  +.|++||+.+++.+..+....                   
T Consensus       131 d~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (349)
T 1jmx_B          131 STADGLEAKPVRTFPMPR-QVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS  205 (349)
T ss_dssp             EGGGGGGBCCSEEEECCS-SCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCC
T ss_pred             ECCCccccceeeeccCCC-cccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCC
Confidence            998854   334555443 588899999 777 44444  349999999988776653221                   


Q ss_pred             --------------------------------------------------CeEEEEEcC-CCCEEEEEECCeEEEEEcCC
Q 004203          193 --------------------------------------------------PIASIAFHA-SGELLAVASGHKLYIWRYNM  221 (768)
Q Consensus       193 --------------------------------------------------~V~svafSP-DG~~LatgSdd~I~IWDl~t  221 (768)
                                                                        .+..++|+| ||++|+++ ++.|++||+.+
T Consensus       206 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~  284 (349)
T 1jmx_B          206 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ  284 (349)
T ss_dssp             TTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT
T ss_pred             cceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc
Confidence                                                              345677889 99999988 77799999988


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ++...    .......+.+++|+|||++|++++
T Consensus       285 ~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          285 RKLIK----AANLDHTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             TEEEE----EEECSSCCCEEEECSSSSCEEEES
T ss_pred             CeEEE----EEcCCCCccceEECCCCCEEEEec
Confidence            76533    222345678999999999888754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.44  E-value=2e-11  Score=129.60  Aligned_cols=175  Identities=11%  Similarity=0.126  Sum_probs=118.4

Q ss_pred             EecCCCEEEEEeCC----CeEEEEeCCC--CC------CCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEE
Q 004203           77 GRDARRGLASWVEA----ESLHHLRPKY--CP------LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLK  143 (768)
Q Consensus        77 ~~d~g~~LvSgs~D----gsIrlWd~~t--~~------L~gH~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~  143 (768)
                      ...+++.|++.+.+    +.|.+|++..  ++      +..+......+++  |+++|++++ .++.|.+|++.+...+.
T Consensus        57 ~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~  134 (361)
T 3scy_A           57 PSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALL  134 (361)
T ss_dssp             ECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBC
T ss_pred             ECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCc
Confidence            34566777777765    7899998764  32      2235567788888  888888777 58899999997543221


Q ss_pred             ----EE--ecC--------CCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCc-------E-------EEEecCCCCe
Q 004203          144 ----VL--HGH--------RRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAE-------C-------IGSRDFYRPI  194 (768)
Q Consensus       144 ----~l--~gH--------~g~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~sg~-------~-------i~~l~h~~~V  194 (768)
                          .+  .+.        ...+.+++|+| ++++++.++ .++.|++|++....       .       ..........
T Consensus       135 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  213 (361)
T 3scy_A          135 PASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGP  213 (361)
T ss_dssp             SCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCE
T ss_pred             ccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCC
Confidence                11  111        22347899999 887655544 58899999887543       1       2223445677


Q ss_pred             EEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEe---ecCCCCeEEEEEccCCCeEEEEEe
Q 004203          195 ASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIV---LRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       195 ~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l---~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..++|+|||++|++++  ++.|.+||+.++.... ...+   ..+...+..++|+|||++|+++..
T Consensus       214 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~-~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          214 RHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE-IQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE-EEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             eEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE-eEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence            8999999999988887  4559999998664321 1111   123355789999999998876653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.43  E-value=6.4e-12  Score=135.02  Aligned_cols=179  Identities=12%  Similarity=0.055  Sum_probs=123.2

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCC-CCCCC---CCC--CCeEEEEECCCCCE--EEEEe-------------CCCeEEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPK-YCPLS---PPP--RSTIAAAFSPDGKT--LASTH-------------GDHTVKI  133 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~-t~~L~---gH~--~~VtslafSPDG~~--LaSgS-------------~DgtVrV  133 (768)
                      .+...+++.|++.+.+ .|.+|++. ++++.   .+.  +.+..++|+|||++  ++++.             .++++++
T Consensus        45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v  123 (365)
T 1jof_A           45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV  123 (365)
T ss_dssp             EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred             EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence            4445567778888777 89999986 54321   111  23566899999994  45553             6899999


Q ss_pred             EeCC-CCeEEEEEe----cCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEECC-CCcEEE--Eec---CCCCeEEEEEcC
Q 004203          134 IDCQ-TGSCLKVLH----GHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNAS-TAECIG--SRD---FYRPIASIAFHA  201 (768)
Q Consensus       134 WDl~-tg~~l~~l~----gH~g~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~-sg~~i~--~l~---h~~~V~svafSP  201 (768)
                      |+++ +++....+.    .+...+..++|+| ++++++++.. ++.|++||+. +++...  .+.   +...+..++|+|
T Consensus       124 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp  202 (365)
T 1jof_A          124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP  202 (365)
T ss_dssp             EEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred             EccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC
Confidence            9997 466554443    2456789999999 8887777654 6799999998 776532  232   356789999999


Q ss_pred             CCCEEEEEEC--CeEEEEEcCC--CccccCCeEee-------cCCC------CeEEEE-EccCCCeEEEEEe
Q 004203          202 SGELLAVASG--HKLYIWRYNM--REETSSPRIVL-------RTRR------SLRAVH-FHPHAAPLLLTAE  255 (768)
Q Consensus       202 DG~~LatgSd--d~I~IWDl~t--~~~~~~~~~l~-------~h~~------~V~sVa-FSPDG~~LlaS~s  255 (768)
                      ||++|++++.  +.|.+|+++.  ++.......+.       ++..      .+..++ |+|||++|+++..
T Consensus       203 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          203 TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            9999988873  4599998864  33210000111       1122      588999 9999998876654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.43  E-value=1.7e-11  Score=130.25  Aligned_cols=173  Identities=13%  Similarity=0.094  Sum_probs=119.0

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCC-CCC-----------------CCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCC
Q 004203           80 ARRGLASWV-EAESLHHLRPKYC-PLS-----------------PPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTG  139 (768)
Q Consensus        80 ~g~~LvSgs-~DgsIrlWd~~t~-~L~-----------------gH~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg  139 (768)
                      +++.|+... .++.|.+|++... .+.                 .+...+.+++|+|||++|++++ .++.|++|+++..
T Consensus       108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~  187 (361)
T 3scy_A          108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN  187 (361)
T ss_dssp             CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence            445555444 6889999998643 111                 1223468899999999776655 4889999988754


Q ss_pred             e-------E------EEEEecCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEEEE--ec----CCCCeEEEEE
Q 004203          140 S-------C------LKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGS--RD----FYRPIASIAF  199 (768)
Q Consensus       140 ~-------~------l~~l~gH~g~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~sg~~i~~--l~----h~~~V~svaf  199 (768)
                      .       .      ......+...+..++|+| ++++++.++ .++.|++||+.+++....  +.    +......++|
T Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~  266 (361)
T 3scy_A          188 ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL  266 (361)
T ss_dssp             CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE
T ss_pred             CCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEE
Confidence            3       1      122233455688999999 888777766 689999999998765322  21    2345679999


Q ss_pred             cCCCCEEEEEECC---eEEEEEcCC--CccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          200 HASGELLAVASGH---KLYIWRYNM--REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       200 SPDG~~LatgSdd---~I~IWDl~t--~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +|||++|+++..+   .|.+|+++.  ++... ...+. ....++.++|+|||++|+++..
T Consensus       267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~-~~~~~-~g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          267 SPDGKYLYASNRLKADGVAIFKVDETNGTLTK-VGYQL-TGIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEEECTTTCCEEE-EEEEE-CSSCCCEEEECTTSCEEEEEET
T ss_pred             CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE-eeEec-CCCCCceEEECCCCCEEEEEEC
Confidence            9999999877643   499999963  33211 11222 2567889999999998887763

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.40  E-value=7.3e-12  Score=132.99  Aligned_cols=160  Identities=8%  Similarity=0.006  Sum_probs=114.5

Q ss_pred             CeEEEEeCCCC---CCCCCCCC-eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE------------
Q 004203           91 ESLHHLRPKYC---PLSPPPRS-TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV------------  154 (768)
Q Consensus        91 gsIrlWd~~t~---~L~gH~~~-VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s------------  154 (768)
                      ..|.+|+..++   ++..+... ...+.|+|||++|+..+.++.|++||+.+++....+..+......            
T Consensus        60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  139 (396)
T 3c5m_A           60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL  139 (396)
T ss_dssp             CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred             ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence            36777887765   23333333 334789999999999999999999999999877666655542222            


Q ss_pred             -------EEEccCCCCEEEEE-----eCCCeEEEEECCCCcEEEEecCCCCeEEEEEcC-CCCEEEEEEC-------CeE
Q 004203          155 -------VRFHPLNPTIIASG-----SLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASG-------HKL  214 (768)
Q Consensus       155 -------VafSP~dg~lLaSg-----S~DgtVrLWDl~sg~~i~~l~h~~~V~svafSP-DG~~LatgSd-------d~I  214 (768)
                             +.|+| +++.++..     ..+..|++||+.+++......+...+..+.|+| +++.|++.++       ..|
T Consensus       140 ~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l  218 (396)
T 3c5m_A          140 VGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM  218 (396)
T ss_dssp             EEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred             ccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence                   24566 55555443     356689999999998877777778899999999 8887877763       248


Q ss_pred             EEEEcCCCccccCCeEeecC--CCCeEEEEEccCCCeEEEEEe
Q 004203          215 YIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       215 ~IWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++||+..++..    .+..+  ...+..+.|+|||++|++.+.
T Consensus       219 ~~~d~~~~~~~----~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          219 WLVNEDGSNVR----KIKEHAEGESCTHEFWIPDGSAMAYVSY  257 (396)
T ss_dssp             EEEETTSCCCE----ESSCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             EEEECCCCcee----EeeccCCCccccceEECCCCCEEEEEec
Confidence            88888665422    22222  235888999999998887754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.40  E-value=6.3e-12  Score=144.79  Aligned_cols=236  Identities=11%  Similarity=0.037  Sum_probs=147.4

Q ss_pred             cCCCE-EEEEe-CCCeEEEEeCC--C-C---CCCC-----CCCCeEEEEECCCCCEEEEEeCC----------CeEEEEe
Q 004203           79 DARRG-LASWV-EAESLHHLRPK--Y-C---PLSP-----PPRSTIAAAFSPDGKTLASTHGD----------HTVKIID  135 (768)
Q Consensus        79 d~g~~-LvSgs-~DgsIrlWd~~--t-~---~L~g-----H~~~VtslafSPDG~~LaSgS~D----------gtVrVWD  135 (768)
                      .+++. |+... .+..|.+|+..  . +   ++..     |...+.+++|||||++|++++.|          .+|++||
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~  167 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP  167 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence            34555 44333 35667777776  2 3   3555     67789999999999999999887          6899999


Q ss_pred             CCC------CeEEEEEe-cCCCCcEEEEEccCCCCEEEEEeCC--------CeEEEEECC-CC---cEEEEec-CCCCeE
Q 004203          136 CQT------GSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLD--------HEVRLWNAS-TA---ECIGSRD-FYRPIA  195 (768)
Q Consensus       136 l~t------g~~l~~l~-gH~g~V~sVafSP~dg~lLaSgS~D--------gtVrLWDl~-sg---~~i~~l~-h~~~V~  195 (768)
                      +.+      ++. ..+. .+...+..++||| |+++|++++.+        ..|++||+. ++   +...... +...+.
T Consensus       168 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~  245 (662)
T 3azo_A          168 LDGSAAADRSAV-RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA  245 (662)
T ss_dssp             TTSTTTTCGGGS-EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred             CCCCccccCCce-eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence            988      554 4454 5556677889999 99999887755        379999999 57   4444444 467899


Q ss_pred             EEEEcCCCCEEEEEEC-C--eEEEEEcCCCccccCCeEeecCCC---------CeEEEEEccCCCeEEEEEeeCCcCCCC
Q 004203          196 SIAFHASGELLAVASG-H--KLYIWRYNMREETSSPRIVLRTRR---------SLRAVHFHPHAAPLLLTAEVNDLDSSE  263 (768)
Q Consensus       196 svafSPDG~~LatgSd-d--~I~IWDl~t~~~~~~~~~l~~h~~---------~V~sVaFSPDG~~LlaS~svwdl~sg~  263 (768)
                      .++|+|||++++++.. +  +|++||+.+++...    +..+..         .+..++|+|+++.++++.. ...    
T Consensus       246 ~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~----l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~----  316 (662)
T 3azo_A          246 QAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ----LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA----  316 (662)
T ss_dssp             EEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE----SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC----
T ss_pred             ceEECCCCeEEEEECCCCCeEEEEEECCCCceee----cccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc----
Confidence            9999999996655553 3  37777765554322    222211         1567899999985554432 110    


Q ss_pred             cceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEE-ecCCCEEEEEecCCCCCcceEEeccCCCcee
Q 004203          264 SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSF-VRDDERISLQHTEHDSGATRTQQSLRSSSSV  342 (768)
Q Consensus       264 ~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psF-SpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~  342 (768)
                                       .+...+...+....+...     .. ....+ ++|++.+++...+.+.....+..+..+...+
T Consensus       317 -----------------~l~~~d~~~~~~~~l~~~-----~~-~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          317 -----------------VLGILDPESGELVDAAGP-----WT-EWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR  373 (662)
T ss_dssp             -----------------EEEEEETTTTEEEECCSS-----CC-EEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             -----------------EEEEEECCCCcEEEecCC-----CC-eEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence                             111111111110000000     01 12233 7889999888776666666777776666655


Q ss_pred             eeeccc
Q 004203          343 RLLTYS  348 (768)
Q Consensus       343 rl~~~~  348 (768)
                      +++...
T Consensus       374 ~l~~~~  379 (662)
T 3azo_A          374 TIGARH  379 (662)
T ss_dssp             EEESCC
T ss_pred             EeecCC
Confidence            554433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.38  E-value=2.5e-12  Score=146.44  Aligned_cols=166  Identities=9%  Similarity=-0.003  Sum_probs=124.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEeCCCCeEEEEEecCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~D----gtVrVWDl~tg~~l~~l~gH~  149 (768)
                      ..+++..++....++.+.+||+.+++   +..+..  .+++|||||++|++++.|    ..|++||+++++.. .+.+|.
T Consensus       118 s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~  194 (582)
T 3o4h_A          118 VDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGE  194 (582)
T ss_dssp             EECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSS
T ss_pred             CCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCC
Confidence            33444444444444455599998763   333333  789999999999988887    88999999988854 667888


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCC--eEEEEECCCCcEEEEecCCCCeEEEE--------EcCCCCEEEEEE-CCeEEEEE
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDH--EVRLWNASTAECIGSRDFYRPIASIA--------FHASGELLAVAS-GHKLYIWR  218 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~Dg--tVrLWDl~sg~~i~~l~h~~~V~sva--------fSPDG~~LatgS-dd~I~IWD  218 (768)
                      +.+..++|+| ||+.|+++..++  .|++||+.+++......+...+..++        |+|||.++++++ ++.+++|+
T Consensus       195 ~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          195 GSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             CEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             CccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence            8899999999 999999888888  89999999998873234555566666        999998777777 55699999


Q ss_pred             cCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +  ++...      .....|.+++|+ ||+.+++.+.
T Consensus       274 ~--g~~~~------~~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          274 D--GERVE------APQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             T--TEEEC------CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred             E--CCeec------cCCCceEEEEec-CCEEEEEEcC
Confidence            9  43211      234678999999 9887665543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.37  E-value=2.1e-11  Score=140.49  Aligned_cols=172  Identities=13%  Similarity=0.054  Sum_probs=121.8

Q ss_pred             CCEEEEE--eCCCeEEEEeCCC-C---CCCCCCCCeE---------EEEEC--CCCCE-EEEEeC-CCeEEEEeCC--C-
Q 004203           81 RRGLASW--VEAESLHHLRPKY-C---PLSPPPRSTI---------AAAFS--PDGKT-LASTHG-DHTVKIIDCQ--T-  138 (768)
Q Consensus        81 g~~LvSg--s~DgsIrlWd~~t-~---~L~gH~~~Vt---------slafS--PDG~~-LaSgS~-DgtVrVWDl~--t-  138 (768)
                      +..+++.  ..++...+|.... +   ++..|...+.         ...|+  |||++ |+..+. +..|++||+.  + 
T Consensus        35 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~  114 (662)
T 3azo_A           35 EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGG  114 (662)
T ss_dssp             EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTC
T ss_pred             eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCC
Confidence            3334444  4467788887532 2   4666776666         66665  99998 776655 6678888876  3 


Q ss_pred             CeEEEEEec-----CCCCcEEEEEccCCCCEEEEEeCC----------CeEEEEECCC------CcEEEEe-cCCCCeEE
Q 004203          139 GSCLKVLHG-----HRRTPWVVRFHPLNPTIIASGSLD----------HEVRLWNAST------AECIGSR-DFYRPIAS  196 (768)
Q Consensus       139 g~~l~~l~g-----H~g~V~sVafSP~dg~lLaSgS~D----------gtVrLWDl~s------g~~i~~l-~h~~~V~s  196 (768)
                      ++ ...+..     |...+..++|+| |++.|++++.|          .+|++||+.+      ++..... .+...+..
T Consensus       115 ~~-~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  192 (662)
T 3azo_A          115 AV-PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTG  192 (662)
T ss_dssp             CC-CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECC
T ss_pred             CC-CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccC
Confidence            44 455555     566788999999 99999988877          5899999998      6666555 55667888


Q ss_pred             EEEcCCCCEEEEEE-CC--------eEEEEEcC-CCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          197 IAFHASGELLAVAS-GH--------KLYIWRYN-MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       197 vafSPDG~~LatgS-dd--------~I~IWDl~-t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++|+|||++|++.+ ++        .|++||+. ++...........+...+..+.|+|||+ +++++.
T Consensus       193 ~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~  260 (662)
T 3azo_A          193 PRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATD  260 (662)
T ss_dssp             CEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEEC
T ss_pred             ceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEEC
Confidence            99999999998877 32        39999998 4521111112334568899999999999 555554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.34  E-value=6.2e-11  Score=127.31  Aligned_cols=146  Identities=14%  Similarity=0.072  Sum_probs=106.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEecC-CCCcEEEEEccCCCCE--EEEEe------------
Q 004203          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGH-RRTPWVVRFHPLNPTI--IASGS------------  169 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~-tg~~l~~l~gH-~g~V~sVafSP~dg~l--LaSgS------------  169 (768)
                      ....+..++|+|||++|++++.+ .|.+||++ +++........ .+.+..++|+| ++++  ++++.            
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceee
Confidence            33468899999999999999988 99999997 78765443311 13366689999 8874  44543            


Q ss_pred             -CCCeEEEEECC-CCcEEEEec-----CCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcC-CCccccCCeEee--cCCCC
Q 004203          170 -LDHEVRLWNAS-TAECIGSRD-----FYRPIASIAFHASGELLAVAS--GHKLYIWRYN-MREETSSPRIVL--RTRRS  237 (768)
Q Consensus       170 -~DgtVrLWDl~-sg~~i~~l~-----h~~~V~svafSPDG~~LatgS--dd~I~IWDl~-t~~~~~~~~~l~--~h~~~  237 (768)
                       .++++.+|++. +++....+.     +...+..++|+|||++|+++.  ++.|++||++ +++... ...+.  .+...
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~g~~  194 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL-VGSVDAPDPGDH  194 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE-EEEEECSSTTCC
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE-eeeEecCCCCCC
Confidence             68999999997 466544332     456789999999999988876  3569999998 554321 11121  23567


Q ss_pred             eEEEEEccCCCeEEEEE
Q 004203          238 LRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       238 V~sVaFSPDG~~LlaS~  254 (768)
                      ++.++|+|||++++++.
T Consensus       195 p~~~~~spdg~~l~v~~  211 (365)
T 1jof_A          195 PRWVAMHPTGNYLYALM  211 (365)
T ss_dssp             EEEEEECTTSSEEEEEE
T ss_pred             CCEeEECCCCCEEEEEE
Confidence            99999999999877665

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.32  E-value=2.4e-10  Score=134.03  Aligned_cols=237  Identities=10%  Similarity=0.001  Sum_probs=151.0

Q ss_pred             EecCCCEEEEEeCCC-----eEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCCe----------------EE
Q 004203           77 GRDARRGLASWVEAE-----SLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHT----------------VK  132 (768)
Q Consensus        77 ~~d~g~~LvSgs~Dg-----sIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS~Dgt----------------Vr  132 (768)
                      .+.+++.|+....++     .|++||+.+++..   .....+..++|+|||+.|+.++.+..                |+
T Consensus       132 ~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~  211 (710)
T 2xdw_A          132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY  211 (710)
T ss_dssp             ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE
T ss_pred             ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEE
Confidence            345666666444332     8999999887422   11223678999999999999988766                99


Q ss_pred             EEeCCCCeE--EEEEec--CCCCcEEEEEccCCCCEEEEEeC-----CCeEEEEECCC------C--cEEEEecCCCCeE
Q 004203          133 IIDCQTGSC--LKVLHG--HRRTPWVVRFHPLNPTIIASGSL-----DHEVRLWNAST------A--ECIGSRDFYRPIA  195 (768)
Q Consensus       133 VWDl~tg~~--l~~l~g--H~g~V~sVafSP~dg~lLaSgS~-----DgtVrLWDl~s------g--~~i~~l~h~~~V~  195 (768)
                      +|++.+++.  ...+..  |...+..+.|+| |+++|+..+.     +..|++||+.+      +  +......+...+.
T Consensus       212 ~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~  290 (710)
T 2xdw_A          212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY  290 (710)
T ss_dssp             EEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE
T ss_pred             EEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE
Confidence            999988763  233333  445577899999 8888877664     56899999987      5  3333444555554


Q ss_pred             EEEEcCCCCEEEEEEC-C----eEEEEEcCCCccccCCeEeecCCC--CeEEEEEccCCCeEEEEEeeCCcCCCCcceeE
Q 004203          196 SIAFHASGELLAVASG-H----KLYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTL  268 (768)
Q Consensus       196 svafSPDG~~LatgSd-d----~I~IWDl~t~~~~~~~~~l~~h~~--~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L  268 (768)
                      . .|+|+|+.|++.++ +    +|.+||+.++.... ...+..+..  .+..+.|++++. ++++.......        
T Consensus       291 ~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~--------  359 (710)
T 2xdw_A          291 D-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK-WKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKN--------  359 (710)
T ss_dssp             E-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-CEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEE--------
T ss_pred             E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-ceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEE--------
Confidence            4 58999998887774 2    39999998764211 223444433  688899996655 55554322110        


Q ss_pred             eecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEeccCCCc
Q 004203          269 ATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSS  340 (768)
Q Consensus       269 ~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~  340 (768)
                                  .+.+++...+........   ....+...++++|++.+++...+...+...+..+..+..
T Consensus       360 ------------~l~~~~~~~g~~~~~l~~---~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          360 ------------TLQLHDLATGALLKIFPL---EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ------------EEEEEETTTCCEEEEECC---CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ------------EEEEEECCCCCEEEecCC---CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                        112222111110000000   011233578899999999998888888888888886655

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.27  E-value=3.1e-10  Score=132.93  Aligned_cols=239  Identities=11%  Similarity=-0.011  Sum_probs=151.3

Q ss_pred             EecCCCEEE-----EEeCCCeEEEEeCCCCCCC--CCCCCe--EEEEECCCCCEEEEEeCCCe-------------EEEE
Q 004203           77 GRDARRGLA-----SWVEAESLHHLRPKYCPLS--PPPRST--IAAAFSPDGKTLASTHGDHT-------------VKII  134 (768)
Q Consensus        77 ~~d~g~~Lv-----Sgs~DgsIrlWd~~t~~L~--gH~~~V--tslafSPDG~~LaSgS~Dgt-------------VrVW  134 (768)
                      .+.+++.|+     +++++..|++||+.++++.  .+...+  ..++|+|||+.|+.++.|..             |++|
T Consensus       128 ~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~  207 (695)
T 2bkl_A          128 VSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH  207 (695)
T ss_dssp             ECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred             ECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence            345666665     3445578999999988543  233333  78999999999999998776             9999


Q ss_pred             eCCCCeE--EEEEe--cCCCCcEEEEEccCCCCEEEEEeCCC----eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEE
Q 004203          135 DCQTGSC--LKVLH--GHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHASGELL  206 (768)
Q Consensus       135 Dl~tg~~--l~~l~--gH~g~V~sVafSP~dg~lLaSgS~Dg----tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~L  206 (768)
                      ++.+++.  ...+.  .|...+..+.|+| |+++|+.++.++    .|++||..+++......+...+....| ++|+ |
T Consensus       208 ~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l  284 (695)
T 2bkl_A          208 TLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-F  284 (695)
T ss_dssp             ETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-E
T ss_pred             ECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-E
Confidence            9998762  23333  3556788999999 888887777665    788888777766665666666666667 6777 6


Q ss_pred             EEEEC-----CeEEEEEcCCCccccCCeEeecC--CCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCC
Q 004203          207 AVASG-----HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPP  279 (768)
Q Consensus       207 atgSd-----d~I~IWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~  279 (768)
                      ++.++     .+|.+||+.+++... ...+..+  ...+..+.|+ ++. ++++...+...                   
T Consensus       285 ~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~l~~~~~~-~~~-lv~~~~~dg~~-------------------  342 (695)
T 2bkl_A          285 YVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPEDSSASLLSVSIV-GGH-LSLEYLKDATS-------------------  342 (695)
T ss_dssp             EEEECTTCTTCEEEEEBTTBCSGGG-CEEEECCCSSCEEEEEEEE-TTE-EEEEEEETTEE-------------------
T ss_pred             EEEECCCCCCCEEEEEeCCCCCccC-CeEEecCCCCCeEEEEEEE-CCE-EEEEEEECCEE-------------------
Confidence            55553     349999997764311 1233333  4568888988 444 55554322110                   


Q ss_pred             CeEEEecCCCCCCCCcccccCCC-CCCceEEEEecCCCEEEEEecCCCCCcceEEeccCCCceeeee
Q 004203          280 PVICMAGAHSSSHPGLAEEVPLI-TPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLL  345 (768)
Q Consensus       280 ~~V~l~d~~s~d~~~L~~~~~~~-slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~  345 (768)
                       .+.+.+.. +..  + ...... ...+...+|++|++.+++...+...+...+..+..+...+.|.
T Consensus       343 -~l~~~~~~-g~~--~-~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          343 -EVRVATLK-GKP--V-RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             -EEEEEETT-CCE--E-EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             -EEEEEeCC-CCe--e-EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence             01111100 000  0 000000 0112256788999999998888888888888888766655444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.25  E-value=4.8e-11  Score=126.63  Aligned_cols=142  Identities=10%  Similarity=0.030  Sum_probs=102.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 004203          108 RSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (768)
Q Consensus       108 ~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~  184 (768)
                      ..+..++|||||++|+....+   ..|++||+.+++......++......+.|+| |++.|++++.++.|++||+.+++.
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCE
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCc
Confidence            347788999999998877553   4799999999886554444333333478999 999999999999999999999887


Q ss_pred             EEEecCCCC-eEE-------------------EEEcCCCCEEEEEE------CCeEEEEEcCCCccccCCeEeecCCCCe
Q 004203          185 IGSRDFYRP-IAS-------------------IAFHASGELLAVAS------GHKLYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       185 i~~l~h~~~-V~s-------------------vafSPDG~~LatgS------dd~I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      ......... ...                   +.|+|+++.+++..      +..|++||+.+++..    .+..+...+
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~~~~~~~  190 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE----VIHQDTAWL  190 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE----EEEEESSCE
T ss_pred             EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE----eeccCCccc
Confidence            665542222 222                   35677777666542      234999999887542    244567789


Q ss_pred             EEEEEcc-CCCeEEEEE
Q 004203          239 RAVHFHP-HAAPLLLTA  254 (768)
Q Consensus       239 ~sVaFSP-DG~~LlaS~  254 (768)
                      ..+.|+| |++.|++..
T Consensus       191 ~~~~~sp~dg~~l~~~~  207 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCH  207 (396)
T ss_dssp             EEEEEETTEEEEEEEEE
T ss_pred             ccceECCCCCCEEEEEe
Confidence            9999999 888777665

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.23  E-value=6e-09  Score=109.01  Aligned_cols=174  Identities=9%  Similarity=-0.010  Sum_probs=122.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCC----CeEEEEeCCCCeEEEEEe--cC
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCLKVLH--GH  148 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L~----gH~~~VtslafSPDG~~LaSgS~D----gtVrVWDl~tg~~l~~l~--gH  148 (768)
                      .++..+++...++.|.+||..++++.    .+...+.+++|++||+++++...+    +.|.+||.++++....+.  .+
T Consensus        54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  133 (333)
T 2dg1_A           54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST  133 (333)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc
Confidence            44555557778899999999876422    466789999999999988877766    789999998887654443  24


Q ss_pred             CCCcEEEEEccCCCCEEEEEeC------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcC
Q 004203          149 RRTPWVVRFHPLNPTIIASGSL------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYN  220 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~  220 (768)
                      ...+..+.++| +++++++...      .+.|+.||..+++..........+..++|+|||+.|+++.  ++.|++||++
T Consensus       134 ~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          134 AYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             CCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence            45789999999 8888777654      3567777777666554444445678999999999776665  4569999996


Q ss_pred             CC-ccccCC--eEeec--CCCCeEEEEEccCCCeEEEE
Q 004203          221 MR-EETSSP--RIVLR--TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       221 t~-~~~~~~--~~l~~--h~~~V~sVaFSPDG~~LlaS  253 (768)
                      +. ......  .....  ....+..++++++|+.++++
T Consensus       213 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~  250 (333)
T 2dg1_A          213 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  250 (333)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             CCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEE
Confidence            42 211100  01111  11467889999999866554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.21  E-value=2.8e-09  Score=113.05  Aligned_cols=155  Identities=14%  Similarity=0.158  Sum_probs=112.9

Q ss_pred             CeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEE---------ecCCCCcEEE
Q 004203           91 ESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVL---------HGHRRTPWVV  155 (768)
Q Consensus        91 gsIrlWd~~t~~L-----~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l---------~gH~g~V~sV  155 (768)
                      +.|.+||..++++     .++-....+++++++|+++++...++.|++||.+... .+..+         .++...+..+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            4799999887643     2455678999999999988888889999999986542 45555         2344568899


Q ss_pred             EEccCCCCEEEEEe-CCCeEEEEECCCCcEEEEecCC-----------CCeEEEEEcCCCCEEEEEE--CCeEEEEEcCC
Q 004203          156 RFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFY-----------RPIASIAFHASGELLAVAS--GHKLYIWRYNM  221 (768)
Q Consensus       156 afSP~dg~lLaSgS-~DgtVrLWDl~sg~~i~~l~h~-----------~~V~svafSPDG~~LatgS--dd~I~IWDl~t  221 (768)
                      +++|+++.++++.+ .++.|++|| .+++.+..+...           .....++++|++..|+++.  +++|++||..+
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~  227 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT  227 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence            99996788888876 689999999 567777666421           2378999999955455444  44599999986


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCC
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAA  248 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~  248 (768)
                      ++... ......+...+..++|+| +.
T Consensus       228 G~~~~-~~~~~~~~~~~~~~~~~p-g~  252 (329)
T 3fvz_A          228 KEFVR-EIKHASFGRNVFAISYIP-GF  252 (329)
T ss_dssp             CCEEE-EECCTTTTTCEEEEEEET-TE
T ss_pred             CcEEE-EEeccccCCCcceeeecC-CE
Confidence            65433 111123556789999999 54

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.19  E-value=1.3e-09  Score=114.39  Aligned_cols=153  Identities=15%  Similarity=0.176  Sum_probs=107.0

Q ss_pred             CCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCC---C--eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCE
Q 004203           90 AESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGD---H--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI  164 (768)
Q Consensus        90 DgsIrlWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~D---g--tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~l  164 (768)
                      +..|.+|+..+++...- ..+..+.|||||++|+..+.+   +  .|++||+.+++.......+ . +..+.|+| |++.
T Consensus        42 ~~~l~~~d~~~~~~~~l-~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~  117 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI-ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRK  117 (347)
T ss_dssp             EEEEEEEETTTCCEEEE-ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSE
T ss_pred             cceEEEEeCCCCceEEc-ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCE
Confidence            56788888876632111 568899999999999988754   2  4888899988876655544 3 89999999 8888


Q ss_pred             EEEEeCC---------------------------CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC-----
Q 004203          165 IASGSLD---------------------------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----  212 (768)
Q Consensus       165 LaSgS~D---------------------------gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd-----  212 (768)
                      |++++.+                           ..|++||+.+++.+..+... .+..++|+||| +++++..+     
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~  195 (347)
T 2gop_A          118 LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQ  195 (347)
T ss_dssp             EEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCC
T ss_pred             EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEeccccccc
Confidence            8877642                           57999999998873333224 78899999999 77766532     


Q ss_pred             ---eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          213 ---KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       213 ---~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                         ...||.+++++.    ..+..+ ..+..+  +|||++|++.+.
T Consensus       196 ~~~~~~l~~~d~~~~----~~l~~~-~~~~~~--spdg~~l~~~~~  234 (347)
T 2gop_A          196 YFKFWDIYIWEDGKE----EKMFEK-VSFYAV--DSDGERILLYGK  234 (347)
T ss_dssp             SSCCEEEEEEETTEE----EEEEEE-ESEEEE--EECSSCEEEEEC
T ss_pred             ccccccEEEeCCCce----EEeccC-cceeeE--CCCCCEEEEEEc
Confidence               334444443332    123334 455544  999998887765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.17  E-value=3.2e-09  Score=109.77  Aligned_cols=169  Identities=13%  Similarity=0.041  Sum_probs=120.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC----CCCcEEE
Q 004203           82 RGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWVV  155 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~--~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----~g~V~sV  155 (768)
                      ..+++...++.|..|+..++  .+..+...+.+++|+++|+++++...++.|.+||.++++........    ...++.+
T Consensus        41 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i  120 (296)
T 3e5z_A           41 AVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDV  120 (296)
T ss_dssp             EEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCE
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCE
Confidence            36777888899999998865  23456778999999999998888777899999999888865443322    2346779


Q ss_pred             EEccCCCCEEEEE----e-------------CCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004203          156 RFHPLNPTIIASG----S-------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIW  217 (768)
Q Consensus       156 afSP~dg~lLaSg----S-------------~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IW  217 (768)
                      +++| +++++++.    .             ..+.|+.+|.. ++.............++|+|||+.|++.+ ++.|++|
T Consensus       121 ~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~  198 (296)
T 3e5z_A          121 CLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRY  198 (296)
T ss_dssp             EECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             EECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEE
Confidence            9999 88888873    2             13467777765 55555555666778999999999984444 3569999


Q ss_pred             EcC-CCcc-ccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          218 RYN-MREE-TSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       218 Dl~-t~~~-~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      |+. .+.. .. ...+..+...+..++++++|+.++++
T Consensus       199 ~~~~~g~~~~~-~~~~~~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          199 CLNARGETEYQ-GVHFTVEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             EECSSSCEEEE-EEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred             EECCCCcCcCC-CeEeeCCCCCCCeEEECCCCCEEEEc
Confidence            997 3322 11 11222244567789999999865554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.16  E-value=3.3e-09  Score=122.79  Aligned_cols=169  Identities=12%  Similarity=0.060  Sum_probs=120.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC--CCeEEEEEecCCCCcEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--TGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~--tg~~l~~l~gH~g~V~sV  155 (768)
                      +..+++...++.|.++|..+.++.   .....+..+.|+|||+++++++.|+.|.+||+.  +++.+..+... .....+
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~i  245 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSI  245 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCcee
Confidence            345667778899999999887432   233467899999999999999999999999995  88888888753 346789


Q ss_pred             EEc----cCCCCEEEEEe-CCCeEEEEECCCCcEEEEecCC---------------------------------------
Q 004203          156 RFH----PLNPTIIASGS-LDHEVRLWNASTAECIGSRDFY---------------------------------------  191 (768)
Q Consensus       156 afS----P~dg~lLaSgS-~DgtVrLWDl~sg~~i~~l~h~---------------------------------------  191 (768)
                      +|+    | |+++++.+. .+++|.++|..+.+.+..+...                                       
T Consensus       246 a~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          246 ETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             EECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             EEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence            999    7 777666655 4689999999888776653210                                       


Q ss_pred             -----------------CCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEe---ecCCC-CeEEEEEccCCC
Q 004203          192 -----------------RPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIV---LRTRR-SLRAVHFHPHAA  248 (768)
Q Consensus       192 -----------------~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l---~~h~~-~V~sVaFSPDG~  248 (768)
                                       .....+.|+|||++++++.  +++|.++|+.+++... ...+   ..|.. .+.  -++|++.
T Consensus       325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~-~i~vgg~~Phpg~g~~--~~~p~~g  401 (567)
T 1qks_A          325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA-IEDTGGQTPHPGRGAN--FVHPTFG  401 (567)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-EEECSSSSBCCTTCEE--EEETTTE
T ss_pred             EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEE-EEeccCcCCCCcccee--eECCCCC
Confidence                             0122568999999998887  4669999999887543 1111   11221 222  2688866


Q ss_pred             eEEEEE
Q 004203          249 PLLLTA  254 (768)
Q Consensus       249 ~LlaS~  254 (768)
                      .+.+++
T Consensus       402 ~v~~t~  407 (567)
T 1qks_A          402 PVWATS  407 (567)
T ss_dssp             EEEEEE
T ss_pred             cEEEeC
Confidence            565554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.14  E-value=5.1e-09  Score=122.80  Aligned_cols=146  Identities=8%  Similarity=0.016  Sum_probs=107.9

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCe------
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHGDH-----TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE------  173 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~Dg-----tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dgt------  173 (768)
                      +|...+..++|||||++|+.++.++     +|++||+++++.+.....+. .+..++|+| |++.|++++.|+.      
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTH-DGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECT-TSSEEEEEECCCCSSCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEe-CCCEEEEEEECCccccccc
Confidence            3545689999999999999776643     89999999998765433222 367799999 9999999888766      


Q ss_pred             ----------EEEEECCCCcEE--EEec---CCCCeEEEEEcCCCCEEEEEEC------CeEEEEEcCC------Ccccc
Q 004203          174 ----------VRLWNASTAECI--GSRD---FYRPIASIAFHASGELLAVASG------HKLYIWRYNM------REETS  226 (768)
Q Consensus       174 ----------VrLWDl~sg~~i--~~l~---h~~~V~svafSPDG~~LatgSd------d~I~IWDl~t------~~~~~  226 (768)
                                |++|++.+++..  ..+.   +...+..+.|+|||++|++.+.      ..|++||+.+      +..  
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--  277 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL--  277 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC--
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc--
Confidence                      999999987632  2222   3456789999999999888762      2499999976      321  


Q ss_pred             CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ....+..+...+.. .|+|+|+.|++.+.
T Consensus       278 ~~~~l~~~~~~~~~-~~s~dg~~l~~~s~  305 (710)
T 2xdw_A          278 KWVKLIDNFEGEYD-YVTNEGTVFTFKTN  305 (710)
T ss_dssp             CCEEEECSSSSCEE-EEEEETTEEEEEEC
T ss_pred             ceEEeeCCCCcEEE-EEeccCCEEEEEEC
Confidence            13345556556655 58999998887764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.11  E-value=1.4e-09  Score=117.72  Aligned_cols=96  Identities=10%  Similarity=0.095  Sum_probs=74.6

Q ss_pred             CCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEeCCCCeEEEEEecC------
Q 004203           89 EAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHG----------DHTVKIIDCQTGSCLKVLHGH------  148 (768)
Q Consensus        89 ~DgsIrlWd~~t~~L----~gH~~~VtslafSPDG~~LaSgS~----------DgtVrVWDl~tg~~l~~l~gH------  148 (768)
                      .|+.|.+||..++++    ..+..+  .++|+|||++|+++..          ++.|.+||+.+++.+..+...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            367899999877642    334333  8999999999999863          678999999999988877632      


Q ss_pred             CCCcEEEEEccCCCCEEEEEeC--CCeEEEEECCCCcEEEE
Q 004203          149 RRTPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGS  187 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~--DgtVrLWDl~sg~~i~~  187 (768)
                      ......++|+| ++++|+++..  +++|.+||+.+++.+..
T Consensus       107 g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          107 LNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             CCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             CCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            34577899999 8888888764  57899999988766554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.11  E-value=8.3e-09  Score=108.17  Aligned_cols=160  Identities=11%  Similarity=0.101  Sum_probs=104.6

Q ss_pred             EecCCCEEEEEeCC---C--eEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCC--------------------
Q 004203           77 GRDARRGLASWVEA---E--SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD--------------------  128 (768)
Q Consensus        77 ~~d~g~~LvSgs~D---g--sIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~D--------------------  128 (768)
                      .+.+++.|+..+.+   +  .|.+|++.+++   +..+.. +..++|+|||+.|+.++.+                    
T Consensus        66 ~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~  144 (347)
T 2gop_A           66 ISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDL  144 (347)
T ss_dssp             ECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC----
T ss_pred             ECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence            33456666655433   2  37777877652   333344 9999999999999988743                    


Q ss_pred             -------CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC---------eEEEEECCCCcEEEEecCCC
Q 004203          129 -------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH---------EVRLWNASTAECIGSRDFYR  192 (768)
Q Consensus       129 -------gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg---------tVrLWDl~sg~~i~~l~h~~  192 (768)
                             ..|++||+.+++.+..+.. . .+..+.|+| ++ +++++..+.         .|+++|  +++......+ .
T Consensus       145 ~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~  217 (347)
T 2gop_A          145 GFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-V  217 (347)
T ss_dssp             -----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-E
T ss_pred             ccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC--CCceEEeccC-c
Confidence                   5799999999987455554 3 788999999 77 777776542         455556  6655444444 4


Q ss_pred             CeEEEEEcCCCCEEEEEEC-C--------eEEEEEcCCCccccCCeEeecCCCCeEE-EEEccCCCeEEEE
Q 004203          193 PIASIAFHASGELLAVASG-H--------KLYIWRYNMREETSSPRIVLRTRRSLRA-VHFHPHAAPLLLT  253 (768)
Q Consensus       193 ~V~svafSPDG~~LatgSd-d--------~I~IWDl~t~~~~~~~~~l~~h~~~V~s-VaFSPDG~~LlaS  253 (768)
                      .+..  ++|||++|++.+. +        .|++||  +++...   ....+...+.. +.|+ || .++++
T Consensus       218 ~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~---l~~~~~~~~~~~~~~s-dg-~~~~~  279 (347)
T 2gop_A          218 SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG---ILDEVDRGVGQAKIKD-GK-VYFTL  279 (347)
T ss_dssp             SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE---SSTTCCSEEEEEEEET-TE-EEEEE
T ss_pred             ceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEe---ccccCCcccCCccEEc-Cc-EEEEE
Confidence            4444  4999998888773 2        377777  333211   12334567886 9999 88 44443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.07  E-value=3.3e-09  Score=114.84  Aligned_cols=170  Identities=11%  Similarity=0.101  Sum_probs=122.9

Q ss_pred             EEEEecCCCEEEEEe----------CCCeEEEEeCCCCCC----CC------CCCCeEEEEECCCCCEEEEEeC--CCeE
Q 004203           74 FEAGRDARRGLASWV----------EAESLHHLRPKYCPL----SP------PPRSTIAAAFSPDGKTLASTHG--DHTV  131 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs----------~DgsIrlWd~~t~~L----~g------H~~~VtslafSPDG~~LaSgS~--DgtV  131 (768)
                      -.+...+++.++...          .++.|.+||..+.+.    ..      +......++|+|||++|+++..  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            445566777777765          356799999886532    11      2345678999999999998874  6789


Q ss_pred             EEEeCCCCeEEEE-EecC-------------------------------CCCcE--------------------------
Q 004203          132 KIIDCQTGSCLKV-LHGH-------------------------------RRTPW--------------------------  153 (768)
Q Consensus       132 rVWDl~tg~~l~~-l~gH-------------------------------~g~V~--------------------------  153 (768)
                      .+||+++++.+.. +...                               .+.+.                          
T Consensus       134 ~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  213 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDK  213 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSE
T ss_pred             EEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCE
Confidence            9999988776655 2100                               00000                          


Q ss_pred             --------------------------------------------EEEEccCCCCEEEEEeC-----------CCeEEEEE
Q 004203          154 --------------------------------------------VVRFHPLNPTIIASGSL-----------DHEVRLWN  178 (768)
Q Consensus       154 --------------------------------------------sVafSP~dg~lLaSgS~-----------DgtVrLWD  178 (768)
                                                                  .++|+| +++.++.+..           +++|.+||
T Consensus       214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD  292 (361)
T 2oiz_A          214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMD  292 (361)
T ss_dssp             EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred             EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEE
Confidence                                                        156777 5555544432           34899999


Q ss_pred             CCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC--ccccCCeEeecCCCCeEEEEEccCCC
Q 004203          179 ASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR--EETSSPRIVLRTRRSLRAVHFHPHAA  248 (768)
Q Consensus       179 l~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~--~~~~~~~~l~~h~~~V~sVaFSPDG~  248 (768)
                      +.+++.+..+.... +..++|+|||++|++++.+.|.+||..++  +...   .+.......+.+.|+|||+
T Consensus       293 ~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~---~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          293 TKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLR---TIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TTTTEEEEEEECTT-CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEE---EETTSCSSEEEEEECCCSC
T ss_pred             CCCCcEEEEEecCC-eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeE---EeccCCCCcEEEEecCCCC
Confidence            99999999887656 99999999999999888867999999998  6533   3345677889999999996

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.06  E-value=3.5e-08  Score=104.91  Aligned_cols=172  Identities=9%  Similarity=0.010  Sum_probs=124.9

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-----C
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-----R  150 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-----g  150 (768)
                      +++...++...++.|.+||..+.++.   ........++++++++.+++...++.|.+||.++++....+....     .
T Consensus        52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~  131 (328)
T 3dsm_A           52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESG  131 (328)
T ss_dssp             ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCC
Confidence            34555555566789999999877432   245678999999998544444489999999999999887776433     1


Q ss_pred             CcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-----------CeEEEEE
Q 004203          151 TPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-----------HKLYIWR  218 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-----------d~I~IWD  218 (768)
                      ....+++ . ++.++++.. .+++|.+||+.+++.+..+........++++|+|+++++...           +.|.+||
T Consensus       132 ~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id  209 (328)
T 3dsm_A          132 STEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID  209 (328)
T ss_dssp             BCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred             CcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence            4556777 4 566666554 488999999999998888776666778999999997666654           3599999


Q ss_pred             cCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ..+.+...  ............++|+||++++.++.
T Consensus       210 ~~t~~v~~--~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          210 AETFTVEK--QFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             TTTTEEEE--EEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             CCCCeEEE--EEecCCCCCceeEEEecCCCEEEEEc
Confidence            98876532  11111234789999999999777653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.06  E-value=2.5e-09  Score=118.39  Aligned_cols=170  Identities=11%  Similarity=0.028  Sum_probs=126.3

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT  138 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~--------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t  138 (768)
                      .+.+....++.+++++.+ .+.+|+.+.-              ....+.. |+.++|  |+++|+++ .++.|++||+.+
T Consensus        41 nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s  115 (388)
T 1xip_A           41 QNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE  115 (388)
T ss_dssp             BCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS
T ss_pred             cEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh
Confidence            334455677788888887 5555875421              1224566 999999  99999999 889999999988


Q ss_pred             CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004203          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIW  217 (768)
Q Consensus       139 g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IW  217 (768)
                      ......+..|...+..+.+.+ .  .++.+..||+|.+||+.++....   +...|.+++|+|+|  ++.+. ++++++|
T Consensus       116 l~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~  187 (388)
T 1xip_A          116 LSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSF  187 (388)
T ss_dssp             TTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEE
T ss_pred             hhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEE
Confidence            776667777888888888776 2  38889999999999999887654   34689999999999  45555 6679999


Q ss_pred             EcCCCcc--cc---CCeEee---cCCCCeEEEEEccCCCeEEEEEe
Q 004203          218 RYNMREE--TS---SPRIVL---RTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       218 Dl~t~~~--~~---~~~~l~---~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +......  ..   .+..+.   +|...|.+|.|.+++.++++=..
T Consensus       188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence            8877663  11   111112   36788999999999997765443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.04  E-value=4.8e-08  Score=100.04  Aligned_cols=166  Identities=13%  Similarity=0.110  Sum_probs=119.1

Q ss_pred             CCCEEEEEeC--CCeEEEEeCCCCC---C-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe--cCCCC
Q 004203           80 ARRGLASWVE--AESLHHLRPKYCP---L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRRT  151 (768)
Q Consensus        80 ~g~~LvSgs~--DgsIrlWd~~t~~---L-~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~--gH~g~  151 (768)
                      ....++....  ++.|.+|+.....   + ..+...+.+++++++|+++++...++.|++||.+ ++.+..+.  ++...
T Consensus        87 ~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~  165 (286)
T 1q7f_A           87 NSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEF  165 (286)
T ss_dssp             TTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSS
T ss_pred             CCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCC
Confidence            3444444442  7899999954331   2 2345678999999999988888888999999964 66666664  34456


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CCeEEEEEcCCCCEEEEEEC-C-eEEEEEcCCCcccc
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASG-H-KLYIWRYNMREETS  226 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~---~~V~svafSPDG~~LatgSd-d-~I~IWDl~t~~~~~  226 (768)
                      +..++++| +++++++...++.|++||. +++.+..+...   ..+..++++++|+++++... + .|++||.... ...
T Consensus       166 p~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~  242 (286)
T 1q7f_A          166 PNGVVVND-KQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LIS  242 (286)
T ss_dssp             EEEEEECS-SSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEE
T ss_pred             cEEEEECC-CCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEE
Confidence            88999999 8888888888999999997 45566665433   57889999999998877764 3 7999996433 222


Q ss_pred             CCeEeecC--CCCeEEEEEccCCCeEEE
Q 004203          227 SPRIVLRT--RRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       227 ~~~~l~~h--~~~V~sVaFSPDG~~Lla  252 (768)
                         .+..+  ...+.+++|+|+|+.+++
T Consensus       243 ---~~~~~~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          243 ---ALESKVKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             ---EEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             ---EEcccCCCCcceeEEECCCCcEEEE
Confidence               22222  235789999999984444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.03  E-value=1.9e-08  Score=105.15  Aligned_cols=166  Identities=11%  Similarity=0.038  Sum_probs=126.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CCCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-CCc
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP----LSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTP  152 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~-~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-g~V  152 (768)
                      +.+..|++++.++.|.+||.++++    +..+. ..+.++.++|+|++|+  +.++.|+.||. +|+.+..+..+. ..+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            356778888999999999997773    44444 4789999999999988  45788999998 899999988653 468


Q ss_pred             EEEEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEEecCC-------CCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCc
Q 004203          153 WVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRDFY-------RPIASIAFHASGELLAVASG-HKLYIWRYNMRE  223 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~-DgtVrLWDl~sg~~i~~l~h~-------~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~  223 (768)
                      .++.+.+ +++++++.+. ++.|..+|. +|+.+..+...       .....+++.++|++|++..+ +.|..||.. ++
T Consensus        80 ~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           80 QTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            8889999 9999998887 778888886 67776665321       23455678999999988874 559999987 65


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ...   . ......+.++.+.++|+.+++..
T Consensus       157 ~~w---~-~~~~~~~~~~~~~~~g~~~v~~~  183 (276)
T 3no2_A          157 LLN---S-VKLSGTPFSSAFLDNGDCLVACG  183 (276)
T ss_dssp             EEE---E-EECSSCCCEEEECTTSCEEEECB
T ss_pred             EEE---E-EECCCCccceeEcCCCCEEEEeC
Confidence            533   2 22234567788899999776544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.03  E-value=1.2e-08  Score=120.54  Aligned_cols=238  Identities=12%  Similarity=0.014  Sum_probs=144.7

Q ss_pred             EecCCCEEEEEeCC-----CeEEEEeCCCCCCC-CCCCC--eEEEEECCCCCEEEEEeCCCe--------------EEEE
Q 004203           77 GRDARRGLASWVEA-----ESLHHLRPKYCPLS-PPPRS--TIAAAFSPDGKTLASTHGDHT--------------VKII  134 (768)
Q Consensus        77 ~~d~g~~LvSgs~D-----gsIrlWd~~t~~L~-gH~~~--VtslafSPDG~~LaSgS~Dgt--------------VrVW  134 (768)
                      .+.+++.|+....+     ..|++||+.+++.. .+...  +..++|+|| +.|+.++.|..              |++|
T Consensus       170 ~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~  248 (741)
T 1yr2_A          170 ASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLH  248 (741)
T ss_dssp             ECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEE
T ss_pred             ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEE
Confidence            34556666554432     46999999987532 11122  357899999 99998887654              9999


Q ss_pred             eCCCCeE--EEEEecC--CCCcEEEEEccCCCCEEEEEeCCC-----eEEEEECCCC--c-EEEEecCCCCeEEEEEcCC
Q 004203          135 DCQTGSC--LKVLHGH--RRTPWVVRFHPLNPTIIASGSLDH-----EVRLWNASTA--E-CIGSRDFYRPIASIAFHAS  202 (768)
Q Consensus       135 Dl~tg~~--l~~l~gH--~g~V~sVafSP~dg~lLaSgS~Dg-----tVrLWDl~sg--~-~i~~l~h~~~V~svafSPD  202 (768)
                      ++.++..  ...+...  ...+..+.|+| |+++|+..+.++     .|++||+.++  + ......+...+... ++|+
T Consensus       249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~d  326 (741)
T 1yr2_A          249 RLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGV  326 (741)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEE
T ss_pred             ECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-Eecc
Confidence            9988752  3344332  23578899999 888888776543     8999999887  4 44444444444444 3489


Q ss_pred             CCEEEEEECC-----eEEEEEcCCCc-cccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCccc
Q 004203          203 GELLAVASGH-----KLYIWRYNMRE-ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWR  276 (768)
Q Consensus       203 G~~LatgSdd-----~I~IWDl~t~~-~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~  276 (768)
                      |+.|++.++.     +|.+||+.+.. ..  ...+..+...+..+.|+  +..++++...+...                
T Consensus       327 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~----------------  386 (741)
T 1yr2_A          327 GDQLWFVSGDGAPLKKIVRVDLSGSTPRF--DTVVPESKDNLESVGIA--GNRLFASYIHDAKS----------------  386 (741)
T ss_dssp             TTEEEEEECTTCTTCEEEEEECSSSSCEE--EEEECCCSSEEEEEEEE--BTEEEEEEEETTEE----------------
T ss_pred             CCEEEEEECCCCCCCEEEEEeCCCCcccc--EEEecCCCCeEEEEEEE--CCEEEEEEEECCEE----------------
Confidence            9988888742     29999987742 11  11233344456677777  44466555422110                


Q ss_pred             CCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEeccCCCceeee
Q 004203          277 YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRL  344 (768)
Q Consensus       277 ~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl  344 (768)
                          .+.+.+.. +........ + ....+..+++++|++.|++...+...+...+..+..+...+.|
T Consensus       387 ----~l~~~~~~-g~~~~~l~~-~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          387 ----QVLAFDLD-GKPAGAVSL-P-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             ----EEEEEETT-SCEEEECBC-S-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             ----EEEEEeCC-CCceeeccC-C-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence                11111100 000000000 0 0112336788999999999888888888888888876654433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.01  E-value=4.1e-09  Score=110.31  Aligned_cols=147  Identities=12%  Similarity=0.106  Sum_probs=110.0

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC----CeEEEEE
Q 004203          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD----HEVRLWN  178 (768)
Q Consensus       103 L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~D----gtVrLWD  178 (768)
                      +..+...+.+++|+++|++++++..++.|++||.++++....+..+...+..++|+| +++++++...+    +.|++||
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEEC
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEe
Confidence            345666789999999999888888899999999998887665545667899999999 88888877766    6899999


Q ss_pred             CCCCcEEEEec---CCCCeEEEEEcCCCCEEEEEEC-------CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCC
Q 004203          179 ASTAECIGSRD---FYRPIASIAFHASGELLAVASG-------HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA  248 (768)
Q Consensus       179 l~sg~~i~~l~---h~~~V~svafSPDG~~LatgSd-------d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~  248 (768)
                      ..+++....+.   ....+..++++|+|+++++...       +.|+.||..+++..    .+......+..++|+|||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEEEESSEEEEEECTTSS
T ss_pred             CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE----EeecCCCcccceEECCCCC
Confidence            98887653332   3457899999999998776653       23666665543321    2223344688999999998


Q ss_pred             eEEEEE
Q 004203          249 PLLLTA  254 (768)
Q Consensus       249 ~LlaS~  254 (768)
                      .++++.
T Consensus       195 ~l~v~~  200 (333)
T 2dg1_A          195 VLWVTE  200 (333)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            666554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.00  E-value=1.5e-08  Score=107.31  Aligned_cols=174  Identities=13%  Similarity=0.165  Sum_probs=126.9

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC--CC------------CCCCCCeEEEEECC-CCCEEEEEe-CCCeEEEEeCCC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC--PL------------SPPPRSTIAAAFSP-DGKTLASTH-GDHTVKIIDCQT  138 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~--~L------------~gH~~~VtslafSP-DG~~LaSgS-~DgtVrVWDl~t  138 (768)
                      .+...++..+++...++.|++|+....  .+            .++-....+++|+| +|+++++.+ .++.|++|| .+
T Consensus        96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A           96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            334445667777777899999998654  11            34455789999999 788888876 699999999 56


Q ss_pred             CeEEEEEecCC----------CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCeEEEEEcCCCCE
Q 004203          139 GSCLKVLHGHR----------RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGEL  205 (768)
Q Consensus       139 g~~l~~l~gH~----------g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---h~~~V~svafSPDG~~  205 (768)
                      ++.+..+....          ..+..++++|+.+.++++...++.|++||..+++.+..+.   +...+..++|+| +..
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~  253 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFL  253 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEE
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEE
Confidence            77777774322          3388999999338888888889999999999898888764   456788999999 433


Q ss_pred             EEEEE--------CCeEEEEEcCCCccccCCeEe---ecCCCCeEEEEEccCCCeEEEEE
Q 004203          206 LAVAS--------GHKLYIWRYNMREETSSPRIV---LRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       206 LatgS--------dd~I~IWDl~t~~~~~~~~~l---~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ++..+        ...|++||+.+++...   .+   ..+...+..|+|+|+|. ++++.
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~---~~~~~~~~~~~p~~ia~~~dG~-lyvad  309 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFSSGEIID---VFKPVRKHFDMPHDIVASEDGT-VYIGD  309 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETTTCCEEE---EECCSSSCCSSEEEEEECTTSE-EEEEE
T ss_pred             EEeCCCEEeccCCCcEEEEEEcCCCeEEE---EEcCCCCccCCeeEEEECCCCC-EEEEE
Confidence            33222        1249999998886543   22   24567799999999995 44443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.97  E-value=3.3e-08  Score=116.11  Aligned_cols=240  Identities=11%  Similarity=0.007  Sum_probs=148.4

Q ss_pred             EecCCCEEE-EE----eCCCeEEEEeCCCCCC-CCCCCCe--EEEEECCCCCEEEEEeCCC-------------eEEEEe
Q 004203           77 GRDARRGLA-SW----VEAESLHHLRPKYCPL-SPPPRST--IAAAFSPDGKTLASTHGDH-------------TVKIID  135 (768)
Q Consensus        77 ~~d~g~~Lv-Sg----s~DgsIrlWd~~t~~L-~gH~~~V--tslafSPDG~~LaSgS~Dg-------------tVrVWD  135 (768)
                      .+.+++.|+ +.    ++...|++||+.+++. ..+...+  ..++|+ ||+.|+.++.+.             .|++|+
T Consensus       136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~  214 (693)
T 3iuj_A          136 FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHR  214 (693)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEE
T ss_pred             ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEE
Confidence            345565555 22    2335799999998853 2232333  578999 999999998874             499999


Q ss_pred             CCCCeE--EEEEec---CCCCcEEEEEccCCCCEEEEEe-C---CCeEEEEECCCC--cEEEEecCCCCeEEEEEcCCCC
Q 004203          136 CQTGSC--LKVLHG---HRRTPWVVRFHPLNPTIIASGS-L---DHEVRLWNASTA--ECIGSRDFYRPIASIAFHASGE  204 (768)
Q Consensus       136 l~tg~~--l~~l~g---H~g~V~sVafSP~dg~lLaSgS-~---DgtVrLWDl~sg--~~i~~l~h~~~V~svafSPDG~  204 (768)
                      +.++..  ...+..   |...+..+.|+| |+++|+... .   +..|++||+.++  +......+....... |+++|.
T Consensus       215 lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~  292 (693)
T 3iuj_A          215 LGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGS  292 (693)
T ss_dssp             TTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETT
T ss_pred             CCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCC
Confidence            987643  333433   344567889999 777665433 2   358999999876  344444444444444 778888


Q ss_pred             EEEEEEC-----CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCC
Q 004203          205 LLAVASG-----HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPP  279 (768)
Q Consensus       205 ~LatgSd-----d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~  279 (768)
                      .|+..++     .+|.++|+.+..... ...+..+...+.  .|++++++|++........                   
T Consensus       293 ~l~~~t~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~-------------------  350 (693)
T 3iuj_A          293 TLYLLTNRDAPNRRLVTVDAANPGPAH-WRDLIPERQQVL--TVHSGSGYLFAEYMVDATA-------------------  350 (693)
T ss_dssp             EEEEEECTTCTTCEEEEEETTSCCGGG-CEEEECCCSSCE--EEEEETTEEEEEEEETTEE-------------------
T ss_pred             EEEEEECCCCCCCEEEEEeCCCCCccc-cEEEecCCCCEE--EEEEECCEEEEEEEECCee-------------------
Confidence            7776663     239999998765422 234555655555  8999999888776533211                   


Q ss_pred             CeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEeccCCCceeeee
Q 004203          280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLL  345 (768)
Q Consensus       280 ~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~  345 (768)
                       .+.+++........+. . + ....+..+++++|++.|++...+...+...+..+..+...+.|.
T Consensus       351 -~l~~~d~~g~~~~~l~-~-p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~  412 (693)
T 3iuj_A          351 -RVEQFDYEGKRVREVA-L-P-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR  412 (693)
T ss_dssp             -EEEEECTTSCEEEEEC-C-S-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred             -EEEEEECCCCeeEEee-c-C-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence             1122221110000000 0 0 00112255678899999999888888888888888766655444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.95  E-value=8.3e-08  Score=98.25  Aligned_cols=170  Identities=9%  Similarity=0.092  Sum_probs=121.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC---C------CCCCCCeEEEEE-CCCCCEEEEEeC-CCeEEEEeCCCCeEEEEE
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCP---L------SPPPRSTIAAAF-SPDGKTLASTHG-DHTVKIIDCQTGSCLKVL  145 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~---L------~gH~~~Vtslaf-SPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l  145 (768)
                      ...++..+++...++.|.+||.....   +      .+|...+.++++ .++++++++... ++.|++|| .+++.+..+
T Consensus        37 ~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~  115 (286)
T 1q7f_A           37 VNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKF  115 (286)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEE
T ss_pred             ECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEe
Confidence            33445566666778889999877431   1      234567899999 567777666643 88999999 667777766


Q ss_pred             ec-CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcC
Q 004203          146 HG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVAS-GHKLYIWRYN  220 (768)
Q Consensus       146 ~g-H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---h~~~V~svafSPDG~~LatgS-dd~I~IWDl~  220 (768)
                      .. +...+..++++| +++++++...++.|++||.. ++.+..+.   +...+..++++++|+++++.. ++.|++||..
T Consensus       116 ~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  193 (286)
T 1q7f_A          116 GATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE  193 (286)
T ss_dssp             CTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             cCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence            43 345688999999 88888888888999999964 56655553   335688999999998666655 5669999975


Q ss_pred             CCccccCCeEeec--CCCCeEEEEEccCCCeEEEE
Q 004203          221 MREETSSPRIVLR--TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       221 t~~~~~~~~~l~~--h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .... .   .+..  +...+..++++++|+.+++.
T Consensus       194 g~~~-~---~~~~~g~~~~p~~i~~d~~G~l~v~~  224 (286)
T 1q7f_A          194 GQYL-R---QIGGEGITNYPIGVGINSNGEILIAD  224 (286)
T ss_dssp             CCEE-E---EESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred             CCEE-E---EEccCCccCCCcEEEECCCCCEEEEe
Confidence            4321 1   2222  23678999999999855554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.92  E-value=2e-08  Score=117.59  Aligned_cols=143  Identities=15%  Similarity=0.118  Sum_probs=100.8

Q ss_pred             CCCCCeEEEEECCCCCEEEE-----EeCCCeEEEEeCCCCeEE-EEEecCCCCcEEEEEccCCCCEEEEEeCCCe-----
Q 004203          105 PPPRSTIAAAFSPDGKTLAS-----THGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-----  173 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaS-----gS~DgtVrVWDl~tg~~l-~~l~gH~g~V~sVafSP~dg~lLaSgS~Dgt-----  173 (768)
                      +|...+.+++|||||++|+.     |+.+.+|++||+++++.+ .... .......++|+| |++.|++++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCcc
Confidence            56667999999999999994     444679999999999864 1111 111226789999 9999999988776     


Q ss_pred             --------EEEEECCCCcE--EEEec---CCCCeEEEEEcCCCCEEEEEE-CC--e--EEEEEcCCCccccCCeEeecCC
Q 004203          174 --------VRLWNASTAEC--IGSRD---FYRPIASIAFHASGELLAVAS-GH--K--LYIWRYNMREETSSPRIVLRTR  235 (768)
Q Consensus       174 --------VrLWDl~sg~~--i~~l~---h~~~V~svafSPDG~~LatgS-dd--~--I~IWDl~t~~~~~~~~~l~~h~  235 (768)
                              |++|++.+++.  ...+.   +...+..+.|+|||++|++.+ ++  .  |++||..+++    ...+..+.
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~----~~~l~~~~  271 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD----FRLLVKGV  271 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS----CEEEEECS
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc----eEEeecCC
Confidence                    99999998763  22222   345788999999999888776 33  3  7777554432    33455566


Q ss_pred             CCeEEEEEccCCCeEEEEEe
Q 004203          236 RSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       236 ~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..+....| ++|. +++.+.
T Consensus       272 ~~~~~~~~-~~g~-l~~~s~  289 (695)
T 2bkl_A          272 GAKYEVHA-WKDR-FYVLTD  289 (695)
T ss_dssp             SCCEEEEE-ETTE-EEEEEC
T ss_pred             CceEEEEe-cCCc-EEEEEC
Confidence            66677767 6777 665543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.90  E-value=4.1e-07  Score=94.88  Aligned_cols=177  Identities=7%  Similarity=-0.014  Sum_probs=113.0

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCCCC--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC---
Q 004203           74 FEAGRDARRGLASWVEAESLHHLRPKYCPL--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH---  148 (768)
Q Consensus        74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L--~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH---  148 (768)
                      ..+..+.+..+++...++.|..||..++++  ......+.++++++||+++++ . +..|.+||.++++........   
T Consensus        18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~   95 (297)
T 3g4e_A           18 PVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDK   95 (297)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTC
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCC
Confidence            333333455566666788899999876632  234567999999999995554 4 568999999988754443321   


Q ss_pred             -CCCcEEEEEccCCCCEEEEEeCC---------CeEEEEECC-CCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEE
Q 004203          149 -RRTPWVVRFHPLNPTIIASGSLD---------HEVRLWNAS-TAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLY  215 (768)
Q Consensus       149 -~g~V~sVafSP~dg~lLaSgS~D---------gtVrLWDl~-sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~  215 (768)
                       ...++.++++| +++++++...+         ..-.||.+. .++...........+.++|+||++.|+++.  .++|.
T Consensus        96 ~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~  174 (297)
T 3g4e_A           96 KNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVD  174 (297)
T ss_dssp             SSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             CCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEE
Confidence             23477899999 88877764321         223444443 244443344444567899999999887766  45699


Q ss_pred             EEEcC--CCccccC--CeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          216 IWRYN--MREETSS--PRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       216 IWDl~--t~~~~~~--~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      +||++  ++.....  ...+......+..++++++|+.+++.
T Consensus       175 ~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~  216 (297)
T 3g4e_A          175 AFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVAC  216 (297)
T ss_dssp             EEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEE
T ss_pred             EEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence            99984  3332110  01111233568899999999855544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.86  E-value=1.6e-07  Score=94.64  Aligned_cols=168  Identities=10%  Similarity=0.002  Sum_probs=117.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC---C-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPL---S-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L---~-gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ++. ++....++.|..||.....+   . .....+.+++++++|+++++...++.|.+||..+.............+..+
T Consensus        77 ~g~-l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i  155 (270)
T 1rwi_B           77 AGT-VYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV  155 (270)
T ss_dssp             TCC-EEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred             CCC-EEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence            344 44444488999999876532   2 233678999999999987777788999999876655433323333467889


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeec
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      ++++ +++++++...++.|.+||...+...... .....+..++++++|.++++.. ++.|.+||........   ....
T Consensus       156 ~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~---~~~~  231 (270)
T 1rwi_B          156 AVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---LPFT  231 (270)
T ss_dssp             EECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE---CCCC
T ss_pred             EEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee---eccC
Confidence            9999 8888877777889999999876654432 2336788999999996665554 4569999986654211   1122


Q ss_pred             CCCCeEEEEEccCCCeEEE
Q 004203          234 TRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~Lla  252 (768)
                      +...+.+++++++|+.+++
T Consensus       232 ~~~~p~~i~~~~~g~l~v~  250 (270)
T 1rwi_B          232 GLNTPLAVAVDSDRTVYVA  250 (270)
T ss_dssp             SCSCEEEEEECTTCCEEEE
T ss_pred             CCCCceeEEECCCCCEEEE
Confidence            3367899999999984444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.86  E-value=1e-07  Score=98.39  Aligned_cols=170  Identities=17%  Similarity=0.123  Sum_probs=117.3

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCCCC-------C-CCCCeEEEEECCCCCEEEEE----e-------------CCCeE
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCPLS-------P-PPRSTIAAAFSPDGKTLAST----H-------------GDHTV  131 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~L~-------g-H~~~VtslafSPDG~~LaSg----S-------------~DgtV  131 (768)
                      ...++..+++...++.|.+||..++++.       + ....+.+++++|+|+++++.    +             ..+.|
T Consensus        76 ~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l  155 (296)
T 3e5z_A           76 LNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV  155 (296)
T ss_dssp             ECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred             ECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence            3344555555555688999998766422       1 12356789999999988873    2             13467


Q ss_pred             EEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CCcE---EEEe-cCCCCeEEEEEcCCCCEE
Q 004203          132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAEC---IGSR-DFYRPIASIAFHASGELL  206 (768)
Q Consensus       132 rVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-sg~~---i~~l-~h~~~V~svafSPDG~~L  206 (768)
                      ..+|.. ++. ..+..+...+..++|+| +++++++.+.++.|++||+. +++.   ...+ .....+..++++++|+++
T Consensus       156 ~~~~~~-g~~-~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~  232 (296)
T 3e5z_A          156 FRLAPD-GTL-SAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIW  232 (296)
T ss_dssp             EEECTT-SCE-EEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEE
T ss_pred             EEECCC-CCE-EEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEE
Confidence            777766 553 44455666788999999 88877777788999999997 5554   2233 133456789999999976


Q ss_pred             EEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEE-ccCCCeEEEEEe
Q 004203          207 AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHF-HPHAAPLLLTAE  255 (768)
Q Consensus       207 atgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaF-SPDG~~LlaS~s  255 (768)
                      ++. +++|.+||.. ++...   .+..+.. +.+++| +|+++.|.+++.
T Consensus       233 v~~-~~~v~~~~~~-g~~~~---~~~~~~~-~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          233 ASA-GDGVHVLTPD-GDELG---RVLTPQT-TSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             EEE-TTEEEEECTT-SCEEE---EEECSSC-CCEEEEESTTSCEEEEEET
T ss_pred             EEc-CCeEEEECCC-CCEEE---EEECCCC-ceeEEEECCCCCEEEEEcC
Confidence            666 7789999986 33222   3344445 899999 689987777664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.84  E-value=1.8e-07  Score=99.38  Aligned_cols=169  Identities=11%  Similarity=0.044  Sum_probs=120.3

Q ss_pred             cCCCEEEEEe-CCCeEEEEeCCCCCCC----CC-----CCCeEEEEECCCCCEEEEEe--CCCeEEEEeCCCCeEEEEEe
Q 004203           79 DARRGLASWV-EAESLHHLRPKYCPLS----PP-----PRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLH  146 (768)
Q Consensus        79 d~g~~LvSgs-~DgsIrlWd~~t~~L~----gH-----~~~VtslafSPDG~~LaSgS--~DgtVrVWDl~tg~~l~~l~  146 (768)
                      .++ .++... .++.|.+||..+.++.    ..     ......+++  +++.|+.+.  .++.|.+||+++++.+..+.
T Consensus        93 ~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~  169 (328)
T 3dsm_A           93 SDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT  169 (328)
T ss_dssp             ETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred             CCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence            344 454444 7899999999876321    11     114556777  455555555  48899999999999888876


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCC----------CeEEEEECCCCcEEEEecC--CCCeEEEEEcCCCCEEEEEECCeE
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLD----------HEVRLWNASTAECIGSRDF--YRPIASIAFHASGELLAVASGHKL  214 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~D----------gtVrLWDl~sg~~i~~l~h--~~~V~svafSPDG~~LatgSdd~I  214 (768)
                      .. .....+.++| +++++++...+          +.|.+||..+++....+..  ......++|+||+++|+++.. .|
T Consensus       170 ~g-~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v  246 (328)
T 3dsm_A          170 IG-IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DI  246 (328)
T ss_dssp             CS-SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SE
T ss_pred             cC-CCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EE
Confidence            53 3467789999 88877776654          7899999999988777654  346889999999999988765 89


Q ss_pred             EEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       215 ~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      .+||..+++..... .+.........++++|++..+.++.
T Consensus       247 ~~~d~~t~~~~~~~-~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          247 WRMPVEADRVPVRP-FLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EEEETTCSSCCSSC-SBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             EEEECCCCceeeee-eecCCCCceEEEEEcCCCCeEEEEc
Confidence            99999887653211 1111246789999999655555554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.82  E-value=1.3e-06  Score=89.91  Aligned_cols=163  Identities=10%  Similarity=0.061  Sum_probs=108.7

Q ss_pred             EeCCCeEEEEeCCCCCCC--------CCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEE-Eec----CCCCc
Q 004203           87 WVEAESLHHLRPKYCPLS--------PPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKV-LHG----HRRTP  152 (768)
Q Consensus        87 gs~DgsIrlWd~~t~~L~--------gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg~~l~~-l~g----H~g~V  152 (768)
                      ...++.|..|+..++++.        ++...+.+++++++ |+++++. ....|.+||.+ ++.... ...    ....+
T Consensus        42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  119 (314)
T 1pjx_A           42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGC  119 (314)
T ss_dssp             TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCC
T ss_pred             CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCC
Confidence            356788999987665321        25567999999999 6655544 44479999998 765433 221    12357


Q ss_pred             EEEEEccCCCCEEEEEeCC---------------CeEEEEECCCCcEEEEecCCCCeEEEEEc----CCCCEEEEEE--C
Q 004203          153 WVVRFHPLNPTIIASGSLD---------------HEVRLWNASTAECIGSRDFYRPIASIAFH----ASGELLAVAS--G  211 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~D---------------gtVrLWDl~sg~~i~~l~h~~~V~svafS----PDG~~LatgS--d  211 (768)
                      ..+++++ +++++++...+               +.|..||.. ++.............++|+    |+++.|+++.  +
T Consensus       120 ~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~  197 (314)
T 1pjx_A          120 NDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT  197 (314)
T ss_dssp             CEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred             cCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCC
Confidence            8999999 88888777655               578888876 6655444444556889999    9998776665  4


Q ss_pred             CeEEEEEcC-CCccccC-C-eEeecCC-CCeEEEEEccCCCeEEEE
Q 004203          212 HKLYIWRYN-MREETSS-P-RIVLRTR-RSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       212 d~I~IWDl~-t~~~~~~-~-~~l~~h~-~~V~sVaFSPDG~~LlaS  253 (768)
                      ++|++||++ .+..... . ..+..+. ..+..++++++|+.+++.
T Consensus       198 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence            569999986 3321110 0 1111222 568899999999866554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.82  E-value=1.4e-07  Score=110.70  Aligned_cols=208  Identities=12%  Similarity=0.082  Sum_probs=127.0

Q ss_pred             CCCCCeEEEEECCCCCEEEEEe-----CCCeEEEEeCCCCeEEEE-EecCCCCcEEEEEccCCCCEEEEEeCCC------
Q 004203          105 PPPRSTIAAAFSPDGKTLASTH-----GDHTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGSLDH------  172 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS-----~DgtVrVWDl~tg~~l~~-l~gH~g~V~sVafSP~dg~lLaSgS~Dg------  172 (768)
                      +|...+.+++|||||++|+.+.     .+.+|++||+++|+.+.. +.+.  ....++|+  |++.|+.++.|.      
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws--Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL--GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE--TTTEEEEEESSCCC----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe--CCCEEEEEEecCcccccc
Confidence            4666899999999999998543     346899999999986543 2221  13457898  567777777663      


Q ss_pred             -------eEEEEECCCCcE--EEEec----CCCCeEEEEEcCCCCEEEEEEC-----CeEEEEEcCCCccccCCeEeecC
Q 004203          173 -------EVRLWNASTAEC--IGSRD----FYRPIASIAFHASGELLAVASG-----HKLYIWRYNMREETSSPRIVLRT  234 (768)
Q Consensus       173 -------tVrLWDl~sg~~--i~~l~----h~~~V~svafSPDG~~LatgSd-----d~I~IWDl~t~~~~~~~~~l~~h  234 (768)
                             .|++|++.++..  ...+.    +...+..+.|+|||++|+....     ..|++||+.++..  ....+..+
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~--~~~~l~~~  279 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA--PLLTVQGD  279 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC--CCEEEECS
T ss_pred             cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC--ceEEEeCC
Confidence                   499999988653  22222    2345788999999998876552     2499999987643  23345555


Q ss_pred             CCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecC
Q 004203          235 RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRD  314 (768)
Q Consensus       235 ~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpD  314 (768)
                      ....... |+++|..|++.++...                   +...|..++...+.........+... .. . .|+++
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~-------------------~~~~l~~~d~~~~~~~~~~~l~~~~~-~~-~-~~s~~  336 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDA-------------------PNRRLVTVDAANPGPAHWRDLIPERQ-QV-L-TVHSG  336 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTC-------------------TTCEEEEEETTSCCGGGCEEEECCCS-SC-E-EEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCC-------------------CCCEEEEEeCCCCCccccEEEecCCC-CE-E-EEEEE
Confidence            5555555 7788887877664211                   11234444433332211111111111 12 2 89999


Q ss_pred             CCEEEEEecCCCCCcceEEeccCCCcee
Q 004203          315 DERISLQHTEHDSGATRTQQSLRSSSSV  342 (768)
Q Consensus       315 G~rIv~~~~d~~~Gs~~~~~~~~ss~~~  342 (768)
                      +++|++...++... .+...+.++....
T Consensus       337 g~~lv~~~~~~g~~-~l~~~d~~g~~~~  363 (693)
T 3iuj_A          337 SGYLFAEYMVDATA-RVEQFDYEGKRVR  363 (693)
T ss_dssp             TTEEEEEEEETTEE-EEEEECTTSCEEE
T ss_pred             CCEEEEEEEECCee-EEEEEECCCCeeE
Confidence            99999875544332 3344455544433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.80  E-value=2.7e-07  Score=108.94  Aligned_cols=145  Identities=14%  Similarity=0.069  Sum_probs=101.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCe-------
Q 004203          106 PPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-------  173 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dgt-------  173 (768)
                      |...+..++|||||++|+.++.+     .+|++||+++++.+.... +...+..++|+| | +.|++++.|+.       
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEEST-T-SEEEEEECCCC-------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEEC-C-CEEEEEEecCcccccccc
Confidence            44468899999999999987654     579999999998755421 222235689999 7 88888776654       


Q ss_pred             -------EEEEECCCCcE--EEEec---CCCCeEEEEEcCCCCEEEEEE-CC-----eEEEEEcCCCccccCCeEeecCC
Q 004203          174 -------VRLWNASTAEC--IGSRD---FYRPIASIAFHASGELLAVAS-GH-----KLYIWRYNMREETSSPRIVLRTR  235 (768)
Q Consensus       174 -------VrLWDl~sg~~--i~~l~---h~~~V~svafSPDG~~LatgS-dd-----~I~IWDl~t~~~~~~~~~l~~h~  235 (768)
                             |++|++.+++.  ...+.   +...+..+.|+|||++|++.+ ++     .|++||+.++... ....+..+.
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~  316 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-PVTALIPDL  316 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC-CCEEEECSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc-ccEEecCCC
Confidence                   99999988763  22232   223588999999999888776 32     4999999876321 023444555


Q ss_pred             CCeEEEEEccCCCeEEEEEe
Q 004203          236 RSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       236 ~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..+.... +|+|+.|++.+.
T Consensus       317 ~~~~~~~-~~dg~~l~~~s~  335 (741)
T 1yr2_A          317 KAQWDFV-DGVGDQLWFVSG  335 (741)
T ss_dssp             SSCEEEE-EEETTEEEEEEC
T ss_pred             CceEEEE-eccCCEEEEEEC
Confidence            5555553 489998887764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.74  E-value=2.9e-06  Score=90.00  Aligned_cols=168  Identities=13%  Similarity=0.011  Sum_probs=110.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC----CCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L~--gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----~g~V~  153 (768)
                      ++..+++...++.|..|+..++++.  .....+.+++|++||+++++. .+ .|++||.++++........    ...++
T Consensus        60 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~  137 (326)
T 2ghs_A           60 SGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSN  137 (326)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCC
Confidence            3455556666778888887765321  234679999999999887754 44 5999999888754433211    13478


Q ss_pred             EEEEccCCCCEEEEEeC------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcC--CC-
Q 004203          154 VVRFHPLNPTIIASGSL------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYN--MR-  222 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~--t~-  222 (768)
                      .+.++| +++++++...      .+.|+.+|  +++.............++|+|||+.|+++.  ++.|.+||++  ++ 
T Consensus       138 ~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl  214 (326)
T 2ghs_A          138 DGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL  214 (326)
T ss_dssp             EEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred             CEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCC
Confidence            899999 8887766542      24566666  565544333334567899999999887766  3459999986  44 


Q ss_pred             ccccCCeEee---cCCCCeEEEEEccCCCeEEEE
Q 004203          223 EETSSPRIVL---RTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       223 ~~~~~~~~l~---~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .... ...+.   .....+..++++++|..++++
T Consensus       215 ~~~~-~~~~~~~~~~~~~p~gi~~d~~G~lwva~  247 (326)
T 2ghs_A          215 PTGK-AEVFIDSTGIKGGMDGSVCDAEGHIWNAR  247 (326)
T ss_dssp             BSSC-CEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             cccC-ceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence            2211 11111   133567889999999865554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.74  E-value=6e-07  Score=93.81  Aligned_cols=171  Identities=11%  Similarity=0.013  Sum_probs=114.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC----CCCc
Q 004203           79 DARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTP  152 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~--~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----~g~V  152 (768)
                      +++..+++...++.|..|+....  .+..+...+.+++++++|+++++...++.|.+||.+ ++........    ...+
T Consensus        55 ~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~  133 (305)
T 3dr2_A           55 AQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSP  133 (305)
T ss_dssp             GGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCC
T ss_pred             CCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCC
Confidence            33445677777888888887422  233456779999999999977766667899999986 6543322211    1346


Q ss_pred             EEEEEccCCCCEEEE----EeC-------------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC----
Q 004203          153 WVVRFHPLNPTIIAS----GSL-------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG----  211 (768)
Q Consensus       153 ~sVafSP~dg~lLaS----gS~-------------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd----  211 (768)
                      +.+.++| +++++++    |..             .+.|+.||..+++..... .....+.++|+||++.|+++..    
T Consensus       134 ~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~  211 (305)
T 3dr2_A          134 NDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQG  211 (305)
T ss_dssp             CCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC--
T ss_pred             CCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcC
Confidence            7899999 8888886    332             256888888777665544 4456678999999998877764    


Q ss_pred             ---CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          212 ---HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       212 ---d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                         +.|++||+..................+..++++++|+.+++
T Consensus       212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~  255 (305)
T 3dr2_A          212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS  255 (305)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC
T ss_pred             CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe
Confidence               35999998765421101111112344567899999984443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.74  E-value=4.5e-07  Score=91.36  Aligned_cols=169  Identities=8%  Similarity=0.003  Sum_probs=112.7

Q ss_pred             cCCCEEE-EEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-cCCCCc
Q 004203           79 DARRGLA-SWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GHRRTP  152 (768)
Q Consensus        79 d~g~~Lv-Sgs~DgsIrlWd~~t~~L----~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-gH~g~V  152 (768)
                      .++...+ +...++.|..|+......    ..+...+.+++++++|+++++.. ++.|++||.++... ..+. .....+
T Consensus        33 ~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p  110 (270)
T 1rwi_B           33 SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYP  110 (270)
T ss_dssp             TTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSE
T ss_pred             CCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCC
Confidence            3444444 335678898998765421    23345688999999999666555 88999999876554 3332 233568


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~  230 (768)
                      ..+++++ +++++++...++.|.+||..+....... .....+..++++++|+++++.. ++.|.+||........   .
T Consensus       111 ~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~  186 (270)
T 1rwi_B          111 EGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---L  186 (270)
T ss_dssp             EEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---C
T ss_pred             cceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe---e
Confidence            8999999 8888887777889999987665443322 2234678899999998665554 4569999987654322   1


Q ss_pred             eecCCCCeEEEEEccCCCeEEEE
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ...+...+..++++++|..+++.
T Consensus       187 ~~~~~~~p~~i~~d~~g~l~v~~  209 (270)
T 1rwi_B          187 PFTDITAPWGIAVDEAGTVYVTE  209 (270)
T ss_dssp             CCSSCCSEEEEEECTTCCEEEEE
T ss_pred             cccCCCCceEEEECCCCCEEEEE
Confidence            12233678999999999644443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.66  E-value=1e-06  Score=91.97  Aligned_cols=166  Identities=13%  Similarity=0.062  Sum_probs=123.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CCCC-CCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEec-----
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP----LSPP-PRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHG-----  147 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~----L~gH-~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~g-----  147 (768)
                      .++..++  +.++.|..||. +++    +..+ ...+.++.+.+||+++++.+. ++.|..+|. +|+.+..+..     
T Consensus        46 pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~  121 (276)
T 3no2_A           46 KAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE  121 (276)
T ss_dssp             TTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS
T ss_pred             CCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC
Confidence            4555555  34667777777 442    2333 346889999999999999888 888888886 6887766642     


Q ss_pred             -CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccc
Q 004203          148 -HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREET  225 (768)
Q Consensus       148 -H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~  225 (768)
                       +......+.+.+ +++++++...++.|..||.+ |+.+..+........+.+.++|..++++.++ +|..+|..+++..
T Consensus       122 ~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~  199 (276)
T 3no2_A          122 RPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV  199 (276)
T ss_dssp             SGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred             cccccccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence             112345567888 99999999999999999998 9999888766667788899999999888865 5999999888764


Q ss_pred             cCCeEeecC------CCCeEEEEEccCCCeEEEE
Q 004203          226 SSPRIVLRT------RRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       226 ~~~~~l~~h------~~~V~sVaFSPDG~~LlaS  253 (768)
                      .   .+...      -..+..+...++|..+++.
T Consensus       200 w---~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          200 R---RVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             E---EEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             E---EecCCCCCCccccccccceEcCCCCEEEEe
Confidence            4   22211      2347888999999866554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.62  E-value=4.7e-06  Score=91.02  Aligned_cols=92  Identities=12%  Similarity=0.001  Sum_probs=69.2

Q ss_pred             eEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEeCCCCeEEEEEecC-------CC
Q 004203           92 SLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGH-------RR  150 (768)
Q Consensus        92 sIrlWd~~t~~L----~gH~~~VtslafSPDG~~LaSgS----------~DgtVrVWDl~tg~~l~~l~gH-------~g  150 (768)
                      .|.++|..+.++    ..-..+  .++|||||++|+++.          .++.|.+||..+.+.+..+.-.       ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            778888876632    222223  999999999999886          3678999999998887766432       12


Q ss_pred             CcEEEEEccCCCCEEEEEeC--CCeEEEEECCCCcEEEE
Q 004203          151 TPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGS  187 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~--DgtVrLWDl~sg~~i~~  187 (768)
                      ....+.|+| |+++|+.+..  ++.|.++| .+++.+..
T Consensus       126 ~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H          126 YSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             CccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence            355789999 8888888764  47899999 88877655

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.62  E-value=7.8e-06  Score=82.84  Aligned_cols=166  Identities=10%  Similarity=0.039  Sum_probs=116.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe--cCCCCc
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRRTP  152 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L-----~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~--gH~g~V  152 (768)
                      ++...++...++.|..||.. +.+     ..+...+.+++++++|+++++...++.|.+||.+ ++. ..+.  .....+
T Consensus        25 ~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~  101 (299)
T 2z2n_A           25 KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAP  101 (299)
T ss_dssp             TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCE
T ss_pred             CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCc
Confidence            33433333346788888877 422     2345779999999999988887778999999986 443 3332  345578


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-c-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCe
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-D-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPR  229 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~  229 (768)
                      ..+.+.+ ++.++++...++.|.+||. +++..... . ....+..++++++|+++++.. .+.|.+||. +++...  .
T Consensus       102 ~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~  176 (299)
T 2z2n_A          102 YGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--F  176 (299)
T ss_dssp             EEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--E
T ss_pred             eeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--e
Confidence            8999999 8888888777889999999 66554332 2 345789999999998776665 356999998 544321  1


Q ss_pred             EeecCCCCeEEEEEccCCCeEEEE
Q 004203          230 IVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       230 ~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ........+..++++++|+.+++.
T Consensus       177 ~~~~~~~~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          177 KIPTPASGPVGITKGNDDALWFVE  200 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             eCCCCCCcceeEEECCCCCEEEEc
Confidence            122345678999999999855543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.61  E-value=3.6e-06  Score=97.31  Aligned_cols=134  Identities=10%  Similarity=0.016  Sum_probs=104.4

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC--CCcEEEEecCCCCe
Q 004203          117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS--TAECIGSRDFYRPI  194 (768)
Q Consensus       117 PDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~--sg~~i~~l~h~~~V  194 (768)
                      +++.++++...++.|.++|..+++.+..+.. ...+..+.|+| |++++++++.|+.|.+||+.  +++.+..+......
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC
Confidence            4455677778899999999999999988874 34577899999 99999999999999999996  78888777766667


Q ss_pred             EEEEEc----CCCCEEEEEE--CCeEEEEEcCCCccccCCeEeec--------C-CCCeEEEEEccCCCeEEEE
Q 004203          195 ASIAFH----ASGELLAVAS--GHKLYIWRYNMREETSSPRIVLR--------T-RRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       195 ~svafS----PDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l~~--------h-~~~V~sVaFSPDG~~LlaS  253 (768)
                      ..++|+    |||+++++++  .+.+.++|..+.+.... ....+        | ...+..+.+++++..+++.
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~-i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI-QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE-EECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE-EeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence            889999    7999999888  45699999888765431 11111        1 2267889999988766554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.61  E-value=3.3e-06  Score=86.84  Aligned_cols=166  Identities=11%  Similarity=0.122  Sum_probs=112.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCC----CC-----CCCCeEEEEECCCCCEEEEEeCC---------------CeEEEEeCC
Q 004203           82 RGLASWVEAESLHHLRPKYCPL----SP-----PPRSTIAAAFSPDGKTLASTHGD---------------HTVKIIDCQ  137 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~L----~g-----H~~~VtslafSPDG~~LaSgS~D---------------gtVrVWDl~  137 (768)
                      ..|+.+.....|.+||.. +++    ..     +...+.+++++++|+++++...+               +.|.+||.+
T Consensus        83 g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (314)
T 1pjx_A           83 NQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD  161 (314)
T ss_dssp             SEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred             CcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence            455555555578888877 432    11     12358899999999888877665               678888876


Q ss_pred             CCeEEEEEecCCCCcEEEEEc----cCCCCEE-EEEeCCCeEEEEECC-CCcEE-----EEec-CC-CCeEEEEEcCCCC
Q 004203          138 TGSCLKVLHGHRRTPWVVRFH----PLNPTII-ASGSLDHEVRLWNAS-TAECI-----GSRD-FY-RPIASIAFHASGE  204 (768)
Q Consensus       138 tg~~l~~l~gH~g~V~sVafS----P~dg~lL-aSgS~DgtVrLWDl~-sg~~i-----~~l~-h~-~~V~svafSPDG~  204 (768)
                       ++..... .+......++|+    | +++.+ ++...++.|++||+. +++..     ..+. +. .....++++++|+
T Consensus       162 -g~~~~~~-~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  238 (314)
T 1pjx_A          162 -GQMIQVD-TAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             -SCEEEEE-EEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             -CCEEEec-cCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence             6544433 334456889999    9 77554 445567899999986 45421     1222 22 5578899999998


Q ss_pred             EEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          205 LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       205 ~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ++++.. +++|.+||.++++...   .+..+...+.+++|+|+|+.|.++.
T Consensus       239 l~v~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          239 LLVANWGSSHIEVFGPDGGQPKM---RIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBSCSE---EEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEcCCCEEEEEcCCCCcEeE---EEeCCCCCceeEEECCCCCEEEEEe
Confidence            777765 5669999987554322   3334457899999999999665554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.60  E-value=8.8e-06  Score=82.43  Aligned_cols=167  Identities=11%  Similarity=0.033  Sum_probs=116.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE-EecCCCCcEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPWV  154 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~g~V~s  154 (768)
                      ++...++...++.|..|+....    .+......+.+++++++|+++++...++.|.+||. +++.... +..+...+..
T Consensus        67 ~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           67 DGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSF  145 (299)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             CCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCce
Confidence            4444444444678888887522    12234567999999999988888778899999998 6654433 2334567889


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEe
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIV  231 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l  231 (768)
                      +++.+ +++++++...++.|..||. +++.... .. ....+..++++++|+++++.. ++.|.+||. ++....  ...
T Consensus       146 i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~  220 (299)
T 2z2n_A          146 ITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE--FKI  220 (299)
T ss_dssp             EEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EEC
T ss_pred             EEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE--EEC
Confidence            99999 7888887777889999999 7665543 22 345688999999998665554 456999998 544321  112


Q ss_pred             ecCCCCeEEEEEccCCCeEEE
Q 004203          232 LRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~Lla  252 (768)
                      ......+.+++++++|+.+++
T Consensus       221 ~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          221 PTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             SSTTCCEEEEEECSTTCEEEE
T ss_pred             CCCCCCceeEEECCCCCEEEe
Confidence            234567999999999985544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.50  E-value=1.4e-05  Score=83.13  Aligned_cols=175  Identities=11%  Similarity=0.053  Sum_probs=114.3

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCCCC---C-----CCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEeCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYCPLS---P-----PPRSTIAAAFSPDGKTLASTHG-----------DHTVKIIDCQ  137 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~~L~---g-----H~~~VtslafSPDG~~LaSgS~-----------DgtVrVWDl~  137 (768)
                      ...++. ++.+. +..|.+||.+++++.   .     ....+++++++|+|+++++...           .+.|+.+|..
T Consensus        61 ~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~  138 (297)
T 3g4e_A           61 LRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD  138 (297)
T ss_dssp             EBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred             ECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC
Confidence            334444 44444 567889998766321   1     1234889999999997665432           2345555543


Q ss_pred             CCeEEEEEecCCCCcEEEEEccCCCCEE-EEEeCCCeEEEEEC--CCCcEE--EEe---c-CCCCeEEEEEcCCCCEEEE
Q 004203          138 TGSCLKVLHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNA--STAECI--GSR---D-FYRPIASIAFHASGELLAV  208 (768)
Q Consensus       138 tg~~l~~l~gH~g~V~sVafSP~dg~lL-aSgS~DgtVrLWDl--~sg~~i--~~l---~-h~~~V~svafSPDG~~Lat  208 (768)
                       ++... +..+....+.++|+| +++.+ ++.+.++.|.+||+  .+++..  +.+   . .......++++++|.+.++
T Consensus       139 -g~~~~-~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva  215 (297)
T 3g4e_A          139 -HHVKK-YFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA  215 (297)
T ss_dssp             -SCEEE-EEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE
T ss_pred             -CCEEE-EeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE
Confidence             44333 333344567899999 77655 55666789999997  456542  112   1 2356788999999987666


Q ss_pred             EEC-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEc-cCCCeEEEEEeeCCc
Q 004203          209 ASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTAEVNDL  259 (768)
Q Consensus       209 gSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFS-PDG~~LlaS~svwdl  259 (768)
                      ... +.|.+||..+++...   .+..+...+++++|. ||++.|.+++....+
T Consensus       216 ~~~~~~v~~~d~~tG~~~~---~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~~  265 (297)
T 3g4e_A          216 CYNGGRVIRLDPVTGKRLQ---TVKLPVDKTTSCCFGGKNYSEMYVTCARDGM  265 (297)
T ss_dssp             EETTTEEEEECTTTCCEEE---EEECSSSBEEEEEEESGGGCEEEEEEBCTTC
T ss_pred             EcCCCEEEEEcCCCceEEE---EEECCCCCceEEEEeCCCCCEEEEEcCCcCC
Confidence            654 459999998776533   344455789999998 899988777764443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.48  E-value=1.3e-05  Score=89.66  Aligned_cols=97  Identities=10%  Similarity=0.019  Sum_probs=75.4

Q ss_pred             CeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEeCCCCeEEEEEecC-------C
Q 004203           91 ESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGH-------R  149 (768)
Q Consensus        91 gsIrlWd~~t~~L----~gH~~~VtslafSPDG~~LaSgS----------~DgtVrVWDl~tg~~l~~l~gH-------~  149 (768)
                      +.|.++|..+.++    ..-..+  .++++|||++|+++.          .++.|.++|..+++.+..+.-.       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            6899999887732    212234  899999999999886          4678999999999988877522       2


Q ss_pred             CCcEEEEEccCCCCEEEEEeC--CCeEEEEECCCCcEEEEecC
Q 004203          150 RTPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGSRDF  190 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~--DgtVrLWDl~sg~~i~~l~h  190 (768)
                      .....+.|+| |+++++.+..  ++.|.+.|+.+++.+..+..
T Consensus       177 ~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          177 TYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             CCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            3456789999 8888888764  57899999999998877654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.46  E-value=4.8e-05  Score=81.01  Aligned_cols=148  Identities=9%  Similarity=-0.019  Sum_probs=101.2

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCeEEEEEecC------CCCcEEEEEccCCCCEEEEEe---C
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGH------RRTPWVVRFHPLNPTIIASGS---L  170 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~~l~gH------~g~V~sVafSP~dg~lLaSgS---~  170 (768)
                      +|-..+.+++|+++|+++++-..     +..|.+||+++++.+..+...      ...+..++++++++..+++-.   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            46678999999999887665544     579999999999977766532      234688999984455556655   6


Q ss_pred             CCeEEEEECCCCcEEEEecC------------------------------CCCeEEEEEcCCCCEEEEEECC--eEEEEE
Q 004203          171 DHEVRLWNASTAECIGSRDF------------------------------YRPIASIAFHASGELLAVASGH--KLYIWR  218 (768)
Q Consensus       171 DgtVrLWDl~sg~~i~~l~h------------------------------~~~V~svafSPDG~~LatgSdd--~I~IWD  218 (768)
                      ++.|.+||+.+++..+.+..                              ...+..++|+|||+.|+++...  +++.++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            78999999998876665421                              0235789999999999888743  366665


Q ss_pred             cCC---Cc----cccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          219 YNM---RE----ETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       219 l~t---~~----~~~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                      ...   ..    .....+...++......++++++|..+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va  264 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVG  264 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEE
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEE
Confidence            431   11    00001122334456678999999985554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.45  E-value=4.2e-05  Score=77.39  Aligned_cols=167  Identities=10%  Similarity=0.013  Sum_probs=115.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE-EEecCCCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~-----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~g~V~  153 (768)
                      ++...++...++.|..|+.. ++     +..+...+.+++++++|+++++...++.|.+||.+ ++... .+......+.
T Consensus        30 ~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~  107 (300)
T 2qc5_A           30 DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPY  107 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCc
Confidence            34444444457788888877 42     22344679999999999988877778999999988 65432 2222346688


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~  230 (768)
                      .+++.+ +++++++...++.|..||.. ++.... +. ....+..++++++|++.++.. ++.|.+||. +++...  ..
T Consensus       108 ~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~  182 (300)
T 2qc5_A          108 GITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE--YP  182 (300)
T ss_dssp             EEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EE
T ss_pred             cceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE--ee
Confidence            999998 88888877778899999987 655433 22 345788999999999555544 456999998 443221  12


Q ss_pred             eecCCCCeEEEEEccCCCeEEEE
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .......+..++++++|..+++.
T Consensus       183 ~~~~~~~~~~i~~d~~g~l~v~~  205 (300)
T 2qc5_A          183 LPTNAAAPVGITSGNDGALWFVE  205 (300)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCCCCCcceEEECCCCCEEEEc
Confidence            22344678999999999855543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.45  E-value=1.4e-05  Score=89.77  Aligned_cols=175  Identities=11%  Similarity=0.097  Sum_probs=117.9

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC--CCC-------------CCCeEEEEECCCCCEEEEEeCC------CeEEEEeCC
Q 004203           79 DARRGLASWVEAESLHHLRPKYCPL--SPP-------------PRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQ  137 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~L--~gH-------------~~~VtslafSPDG~~LaSgS~D------gtVrVWDl~  137 (768)
                      +.+..++.+..+..|.++|..+...  +-+             ...-..+..+||| +++++..+      +.|.++|.+
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence            4455566777888999999865411  100             1123556789999 77777666      789999999


Q ss_pred             CCeEEEEEecCCC---CcEEEEEccCCCCEEEEEe-------------------CCCeEEEEECCCCcEEEEecCC---C
Q 004203          138 TGSCLKVLHGHRR---TPWVVRFHPLNPTIIASGS-------------------LDHEVRLWNASTAECIGSRDFY---R  192 (768)
Q Consensus       138 tg~~l~~l~gH~g---~V~sVafSP~dg~lLaSgS-------------------~DgtVrLWDl~sg~~i~~l~h~---~  192 (768)
                      +++.+..+....+   --+.+-|+| +++.+++..                   .+.+|.+||+.+++.+.++...   .
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9999988863322   244578899 888888874                   3679999999999888877653   2


Q ss_pred             CeEEEEE--cCCCCEEEEEEC-----C--eEEEEEcCCCccccCCe------Eeec-----------CCCCeEEEEEccC
Q 004203          193 PIASIAF--HASGELLAVASG-----H--KLYIWRYNMREETSSPR------IVLR-----------TRRSLRAVHFHPH  246 (768)
Q Consensus       193 ~V~svaf--SPDG~~LatgSd-----d--~I~IWDl~t~~~~~~~~------~l~~-----------h~~~V~sVaFSPD  246 (768)
                      ....+.|  +|+++++++++.     .  .|.+|..+.+.......      ....           .......|.+|||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            2334545  999998887774     3  37776665432111000      0000           0245788999999


Q ss_pred             CCeEEEEEe
Q 004203          247 AAPLLLTAE  255 (768)
Q Consensus       247 G~~LlaS~s  255 (768)
                      |++|.++..
T Consensus       332 GrfLYVSnr  340 (462)
T 2ece_A          332 DKFLYLSLW  340 (462)
T ss_dssp             SCEEEEEET
T ss_pred             CCEEEEEeC
Confidence            998887764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.44  E-value=1.5e-06  Score=96.03  Aligned_cols=119  Identities=12%  Similarity=0.001  Sum_probs=96.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ++..|+.+ .++.|++||....    .+..|...|.++.+.+.  .+++++.||.|.+||+++++...    +...|.++
T Consensus        96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v  168 (388)
T 1xip_A           96 HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSF  168 (388)
T ss_dssp             ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEE
T ss_pred             CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEE
Confidence            66777777 8899999998654    24467778999888764  38899999999999999887654    33579999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcE--EEEe----------cCCCCeEEEEEcCCCCEEEE
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAEC--IGSR----------DFYRPIASIAFHASGELLAV  208 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~--i~~l----------~h~~~V~svafSPDG~~Lat  208 (768)
                      +||| +|  ++.|..||++++|+...++.  .+++          +|...|.++.|.+++.+|++
T Consensus       169 ~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          169 DVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999 66  67899999999999988775  5555          25678999999999988875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.44  E-value=9.3e-06  Score=89.61  Aligned_cols=170  Identities=9%  Similarity=-0.027  Sum_probs=112.2

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCC--eEEEEeCCCCeEEEEE----e
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVL----H  146 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS~Dg--tVrVWDl~tg~~l~~l----~  146 (768)
                      +...++..+++...++.|+.||..++.+.   ....... ++|+++++.|+++..++  .|.+||..++.....+    .
T Consensus       137 a~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~  215 (409)
T 3hrp_A          137 AAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS  215 (409)
T ss_dssp             EECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT
T ss_pred             EEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc
Confidence            33344555555556789999999876321   1122233 99999999999998866  8999998776554444    2


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE----e-cCCCC--eEEEEEcCCCCEEEEEE--CCeEEEE
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS----R-DFYRP--IASIAFHASGELLAVAS--GHKLYIW  217 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~----l-~h~~~--V~svafSPDG~~LatgS--dd~I~IW  217 (768)
                      .....++.++++|+++. |+.+..++.|+.||..++.....    . .....  ...++|+|++..|+++.  .+.|++|
T Consensus       216 ~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~  294 (409)
T 3hrp_A          216 TFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKI  294 (409)
T ss_dssp             TSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             hhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEE
Confidence            24566888999994454 44477788999999988764332    1 11111  23899999766666665  3459999


Q ss_pred             EcCCCccccCCeEeecC---------------CCCeEEEEEccCCCeEEE
Q 004203          218 RYNMREETSSPRIVLRT---------------RRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       218 Dl~t~~~~~~~~~l~~h---------------~~~V~sVaFSPDG~~Lla  252 (768)
                      |.+....     .+.++               -.....++|+|+|+.+++
T Consensus       295 ~~~g~~~-----~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva  339 (409)
T 3hrp_A          295 TPDGECE-----WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV  339 (409)
T ss_dssp             CTTCCEE-----EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred             ecCCCEE-----EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence            8765421     22222               245889999999995544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.42  E-value=5.7e-05  Score=76.41  Aligned_cols=167  Identities=10%  Similarity=0.027  Sum_probs=115.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE-EecCCCCcE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~-----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~g~V~  153 (768)
                      ++...++...++.|..+|.. ++     +......+.+++++++|+++++...++.|.+||.+ ++.... +......+.
T Consensus        72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~  149 (300)
T 2qc5_A           72 LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA  149 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence            34444444446788888877 42     22244679999999999988877778899999987 655432 333456788


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeE
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~  230 (768)
                      .+++.+ +++++++...++.|..||. +++.....  .....+..++++++|.+.++... +.|.+||. +++...  ..
T Consensus       150 ~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~  224 (300)
T 2qc5_A          150 FITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE--YD  224 (300)
T ss_dssp             EEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EE
T ss_pred             eEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE--EE
Confidence            999999 8887777666789999998 56554422  23356889999999986665544 45999998 333211  11


Q ss_pred             eecCCCCeEEEEEccCCCeEEEE
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .......+.+++++++|+.+++.
T Consensus       225 ~~~~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          225 IPTPNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEE
T ss_pred             CCCCCCCceEEEECCCCCEEEec
Confidence            22345678999999999855443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.40  E-value=2.1e-05  Score=86.70  Aligned_cols=169  Identities=9%  Similarity=-0.048  Sum_probs=112.1

Q ss_pred             cCCCEEEEEeCCC--eEEEEeCCCCC----C----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE----
Q 004203           79 DARRGLASWVEAE--SLHHLRPKYCP----L----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV----  144 (768)
Q Consensus        79 d~g~~LvSgs~Dg--sIrlWd~~t~~----L----~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~----  144 (768)
                      ..+..|+....++  .|..|+.....    +    ..+...+.+++++|++..|+.+..++.|++||.+++.....    
T Consensus       180 ~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~  259 (409)
T 3hrp_A          180 KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE  259 (409)
T ss_dssp             TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC
T ss_pred             cCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc
Confidence            4455666666655  78888776432    1    22456788999999666666677789999999988764333    


Q ss_pred             EecCCCCc-E-EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---------------CCeEEEEEcCCCCEEE
Q 004203          145 LHGHRRTP-W-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---------------RPIASIAFHASGELLA  207 (768)
Q Consensus       145 l~gH~g~V-~-sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~---------------~~V~svafSPDG~~La  207 (768)
                      ..++.+.- . .++|+|+++.++++-..++.|+.||.... .....++.               .....++|+|+|++++
T Consensus       260 ~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv  338 (409)
T 3hrp_A          260 LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI  338 (409)
T ss_dssp             CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE
T ss_pred             ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE
Confidence            22333322 3 89999955777777777889999998643 32222221               3467899999999655


Q ss_pred             EEE-C-CeEEEEEcCCCccccCCeEeecC---------------CCCeEEEEEccCCCeEEE
Q 004203          208 VAS-G-HKLYIWRYNMREETSSPRIVLRT---------------RRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       208 tgS-d-d~I~IWDl~t~~~~~~~~~l~~h---------------~~~V~sVaFSPDG~~Lla  252 (768)
                      +-+ . +.|++||+.++...    .+.++               -.....++++++|..+++
T Consensus       339 ad~~~~~~I~~~~~~~G~v~----~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa  396 (409)
T 3hrp_A          339 VDGFKGYCLRKLDILDGYVS----TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA  396 (409)
T ss_dssp             EETTTTCEEEEEETTTTEEE----EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred             EeCCCCCEEEEEECCCCEEE----EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence            554 3 34999997666432    22222               246899999999764443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.38  E-value=1.7e-05  Score=87.66  Aligned_cols=177  Identities=14%  Similarity=0.091  Sum_probs=112.9

Q ss_pred             EEEecCCCEEEEEe----------CCCeEEEEeCCCCCCCC-----C------CCCeEEEEECCCCCEEEEEeC--CCeE
Q 004203           75 EAGRDARRGLASWV----------EAESLHHLRPKYCPLSP-----P------PRSTIAAAFSPDGKTLASTHG--DHTV  131 (768)
Q Consensus        75 ~a~~d~g~~LvSgs----------~DgsIrlWd~~t~~L~g-----H------~~~VtslafSPDG~~LaSgS~--DgtV  131 (768)
                      .+...+++.++...          .++.|.+||..+.+...     .      ...-..++|+|||++++++..  ++.|
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence            44445565555443          46789999998874221     1      124567999999999998864  6899


Q ss_pred             EEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEe-cC----CCCe-EEEEEc-CCC
Q 004203          132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSR-DF----YRPI-ASIAFH-ASG  203 (768)
Q Consensus       132 rVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s-g~~i~~l-~h----~~~V-~svafS-PDG  203 (768)
                      .++|+.+++.+..+.-..  .  ..+.|.+.+.+++.+.||.+.+.++.+ ++..... ..    ..++ ....|. ++|
T Consensus       163 sVID~~t~~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          163 GVVDLEGKAFKRMLDVPD--C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             EEEECCCCcEEEEEECCC--c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            999999999998886432  1  223343667788889999999999986 5543321 11    1122 124664 688


Q ss_pred             CEEEEEECCeEEEEEcCCCccc-cCCeEeec--------CCCCeEEEEEccCCCeEEEEEe
Q 004203          204 ELLAVASGHKLYIWRYNMREET-SSPRIVLR--------TRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       204 ~~LatgSdd~I~IWDl~t~~~~-~~~~~l~~--------h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +++++..++.+++.|+.+.... ..+..+..        .......+.++|+++.+.....
T Consensus       239 ~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~  299 (386)
T 3sjl_D          239 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD  299 (386)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEec
Confidence            7666555677999999766421 11111000        1223445778999987776643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.37  E-value=3.5e-05  Score=81.62  Aligned_cols=168  Identities=13%  Similarity=0.114  Sum_probs=108.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC---C----C-CCCeEEEEECCCCCEEEEEeC------CCeEEEEeCCCCeEEEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPLS---P----P-PRSTIAAAFSPDGKTLASTHG------DHTVKIIDCQTGSCLKVL  145 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L~---g----H-~~~VtslafSPDG~~LaSgS~------DgtVrVWDl~tg~~l~~l  145 (768)
                      ++..++ +.. ..|.+||..++++.   .    . ...+.+++++|+|+++++...      .+.|+.+|  +++.....
T Consensus       100 dg~l~v-~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~  175 (326)
T 2ghs_A          100 DSKQLI-ASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF  175 (326)
T ss_dssp             TTEEEE-EET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE
T ss_pred             CCeEEE-EEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee
Confidence            444444 444 34888998766421   1    1 235899999999997765543      25677777  56544332


Q ss_pred             ecCCCCcEEEEEccCCCCEEE-EEeCCCeEEEEECC--CC-cE-----EEEec-CCCCeEEEEEcCCCCEEEEEE-CCeE
Q 004203          146 HGHRRTPWVVRFHPLNPTIIA-SGSLDHEVRLWNAS--TA-EC-----IGSRD-FYRPIASIAFHASGELLAVAS-GHKL  214 (768)
Q Consensus       146 ~gH~g~V~sVafSP~dg~lLa-SgS~DgtVrLWDl~--sg-~~-----i~~l~-h~~~V~svafSPDG~~LatgS-dd~I  214 (768)
                       .+......++|+| +++.++ +.+.++.|++||+.  ++ +.     ...+. .......++++++|.+.++.. +++|
T Consensus       176 -~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v  253 (326)
T 2ghs_A          176 -ADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV  253 (326)
T ss_dssp             -EEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred             -CCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEE
Confidence             3334577899999 776554 44567899999986  55 32     21222 234567899999998766655 4669


Q ss_pred             EEEEcCCCccccCCeEeecCCCCeEEEEEc-cCCCeEEEEEeeC
Q 004203          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTAEVN  257 (768)
Q Consensus       215 ~IWDl~t~~~~~~~~~l~~h~~~V~sVaFS-PDG~~LlaS~svw  257 (768)
                      .+||.. ++...   .+..+...+.+++|+ |+++.|+++....
T Consensus       254 ~~~d~~-g~~~~---~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          254 DRYDTD-GNHIA---RYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEECTT-CCEEE---EEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EEECCC-CCEEE---EEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            999983 43322   333445679999998 8988777666533

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.30  E-value=0.00023  Score=77.54  Aligned_cols=108  Identities=14%  Similarity=-0.033  Sum_probs=82.9

Q ss_pred             EECCCCCEEEEEeC--CC---eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----------CCCeEEEEE
Q 004203          114 AFSPDGKTLASTHG--DH---TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------LDHEVRLWN  178 (768)
Q Consensus       114 afSPDG~~LaSgS~--Dg---tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS----------~DgtVrLWD  178 (768)
                      ...|+++++++...  ..   +|.+||..+++.+..+.....+  .+.++| |+++++.+.          .++.|.+||
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECC-CCCEEEEEeccccccccCCCCCeEEEEE
Confidence            44578888887764  22   8999999999988888654443  899999 888877765          367899999


Q ss_pred             CCCCcEEEEecCC--------CCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccc
Q 004203          179 ASTAECIGSRDFY--------RPIASIAFHASGELLAVASG---HKLYIWRYNMREET  225 (768)
Q Consensus       179 l~sg~~i~~l~h~--------~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~  225 (768)
                      ..+.+.+..+...        .....++|+|||++|++++.   +.|.++| .+++..
T Consensus       104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~  160 (373)
T 2mad_H          104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD  160 (373)
T ss_pred             CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE
Confidence            9998887765432        23457899999999998873   4499999 887653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.22  E-value=1.1e-05  Score=89.22  Aligned_cols=139  Identities=11%  Similarity=-0.000  Sum_probs=99.9

Q ss_pred             EEEECCCCCEEEEEeC-----CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----------CCCeEEE
Q 004203          112 AAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------LDHEVRL  176 (768)
Q Consensus       112 slafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS----------~DgtVrL  176 (768)
                      .....||++.+++...     ++.|.++|..+++.+..+..-..+ . +.++| |+++++.+.          .++.|.+
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~sp-DG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVAD-DGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECT-TSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECC-CCCEEEEEcccccccccCCCCCEEEE
Confidence            3556789999998866     679999999999999988754444 4 99999 777666654          4678999


Q ss_pred             EECCCCcEEEEecCC--------CCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecC-----CCCeEE
Q 004203          177 WNASTAECIGSRDFY--------RPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRT-----RRSLRA  240 (768)
Q Consensus       177 WDl~sg~~i~~l~h~--------~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h-----~~~V~s  240 (768)
                      ||..+.+.+..+...        .....++|+|||++|+++..   +.|.++|+.+.+..... .+.+.     ...-..
T Consensus       114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI-~v~g~~~~~P~g~~~~  192 (386)
T 3sjl_D          114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML-DVPDCYHIFPTAPDTF  192 (386)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-ECCSEEEEEEEETTEE
T ss_pred             EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE-ECCCcceeecCCCcee
Confidence            999999988876432        24557999999999998862   45999999998764411 11000     011122


Q ss_pred             EEEccCCCeEEEEE
Q 004203          241 VHFHPHAAPLLLTA  254 (768)
Q Consensus       241 VaFSPDG~~LlaS~  254 (768)
                      +..++||+.++...
T Consensus       193 ~~~~~DG~~~~v~~  206 (386)
T 3sjl_D          193 FMHCRDGSLAKVAF  206 (386)
T ss_dssp             EEEETTSCEEEEEC
T ss_pred             EEECCCCCEEEEEC
Confidence            46778887655543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.21  E-value=5.3e-05  Score=80.68  Aligned_cols=164  Identities=9%  Similarity=-0.028  Sum_probs=105.7

Q ss_pred             CCeEEEEeCCCCCC----------CCCCCCeEEEEECCCCCEEE-EEe---CCCeEEEEeCCCCeEEEEEecCC------
Q 004203           90 AESLHHLRPKYCPL----------SPPPRSTIAAAFSPDGKTLA-STH---GDHTVKIIDCQTGSCLKVLHGHR------  149 (768)
Q Consensus        90 DgsIrlWd~~t~~L----------~gH~~~VtslafSPDG~~La-SgS---~DgtVrVWDl~tg~~l~~l~gH~------  149 (768)
                      +..|.+||..++++          ..+...+..+++++++..++ +-.   .++.|++||+.+++..+.+.+|.      
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            46788888776531          12334578999998655554 444   67899999999888777664431      


Q ss_pred             -----------------------CCcEEEEEccCCCCEEEEEeCCC-eEEEEECC---CCc--------EEEEecCCCCe
Q 004203          150 -----------------------RTPWVVRFHPLNPTIIASGSLDH-EVRLWNAS---TAE--------CIGSRDFYRPI  194 (768)
Q Consensus       150 -----------------------g~V~sVafSP~dg~lLaSgS~Dg-tVrLWDl~---sg~--------~i~~l~h~~~V  194 (768)
                                             ..+..++|+| +++.|+++..++ .|+.+|..   .+.        .+...++....
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p  250 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC  250 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC
Confidence                                   1257799999 888888877666 55555432   111        01122334456


Q ss_pred             EEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEee
Q 004203          195 ASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEV  256 (768)
Q Consensus       195 ~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~sv  256 (768)
                      ..++++++|.++++.. ++.|.+||..+++...  .........+.+++|.++|+.++++...
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~--~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITSADRAYKL--LVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE--EEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEECCCCCEEE--EEECCceecCCeeEECCCCcEEEEeCcc
Confidence            6799999998777666 4569999984443211  1111124568999999999866665543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.21  E-value=3.7e-05  Score=86.35  Aligned_cols=164  Identities=9%  Similarity=0.005  Sum_probs=109.5

Q ss_pred             CeEEEEeCCCCCCC------CCC-CCeEEEEECCCCCEEEEEe-------------------CCCeEEEEeCCCCeEEEE
Q 004203           91 ESLHHLRPKYCPLS------PPP-RSTIAAAFSPDGKTLASTH-------------------GDHTVKIIDCQTGSCLKV  144 (768)
Q Consensus        91 gsIrlWd~~t~~L~------gH~-~~VtslafSPDG~~LaSgS-------------------~DgtVrVWDl~tg~~l~~  144 (768)
                      +.|.+.|.++.++.      ... .--..+-|+|+++.+++..                   .+.+|.+||+.+++.+..
T Consensus       164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t  243 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS  243 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence            67888998866322      122 2245688999999998885                   368999999999988887


Q ss_pred             EecC--CCCcEEEEE--ccCCCCEEEEEe------CCCeEEEEECCCCcEE--EEe--cC-----------------CCC
Q 004203          145 LHGH--RRTPWVVRF--HPLNPTIIASGS------LDHEVRLWNASTAECI--GSR--DF-----------------YRP  193 (768)
Q Consensus       145 l~gH--~g~V~sVaf--SP~dg~lLaSgS------~DgtVrLWDl~sg~~i--~~l--~h-----------------~~~  193 (768)
                      +.--  ......+.|  +| ++++++.++      .+++|.+|....++..  ..+  ..                 ...
T Consensus       244 I~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~  322 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL  322 (462)
T ss_dssp             EESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred             EecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence            7642  123455666  99 777776665      5668888776554321  111  10                 245


Q ss_pred             eEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEeecC-C-------------CCeEEEEEccCCCeEEEEEe
Q 004203          194 IASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRT-R-------------RSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       194 V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~l~~h-~-------------~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...+.+++||++|+++..  +.|.+||+...........+... .             ...+.+.++|||++|+++.+
T Consensus       323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs  400 (462)
T 2ece_A          323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS  400 (462)
T ss_dssp             CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence            678999999999999984  45999998643221101111111 0             13688999999999888875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.20  E-value=4.7e-05  Score=80.00  Aligned_cols=172  Identities=8%  Similarity=0.012  Sum_probs=118.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCC--CCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPLSP--PPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L~g--H~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa  156 (768)
                      ++...++.+.++.|+.+|++++++..  -..........++++.|+... .++.+.+||.++.+.+..+... ..-+.++
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt  142 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLC  142 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEe
Confidence            46666777888899999999885432  122333322233455555554 5889999999999999998753 2234455


Q ss_pred             EccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC------CCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCC
Q 004203          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY------RPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSP  228 (768)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~------~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~~  228 (768)
                        + +++.|+.+..++.|+++|.++.+.+..+...      ..++.+.|. +|+ |.+..  .+.|.+.|.++++.... 
T Consensus       143 --~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~-  216 (268)
T 3nok_A          143 --Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGV-  216 (268)
T ss_dssp             --E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEE-
T ss_pred             --c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEE-
Confidence              4 5666666667889999999999988876421      245678887 775 44444  45699999999876441 


Q ss_pred             eEee-----------cCCCCeEEEEEccCCCeEEEEEeeCC
Q 004203          229 RIVL-----------RTRRSLRAVHFHPHAAPLLLTAEVND  258 (768)
Q Consensus       229 ~~l~-----------~h~~~V~sVaFSPDG~~LlaS~svwd  258 (768)
                      ..+.           ....-.+.|+|+|+++.|++++..|.
T Consensus       217 Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp  257 (268)
T 3nok_A          217 IDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP  257 (268)
T ss_dssp             EECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred             EECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence            1111           11246799999999999999998774

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.19  E-value=1.9e-05  Score=82.40  Aligned_cols=139  Identities=9%  Similarity=0.019  Sum_probs=98.8

Q ss_pred             CCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 004203          107 PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (768)
Q Consensus       107 ~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i  185 (768)
                      .....+..|+|+|+ ++++...++.|.+|+. +++ ...+..+...+..+.+++ +++++++...++.|.+||.. ++..
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~  119 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAH  119 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEE
Confidence            34567899999998 5666677899999998 455 455555667789999999 88877766667889999986 5543


Q ss_pred             EEecC-----CCCeEEEEEcCCCCEEEE----EE--------------CCeEEEEEcCCCccccCCeEeecCCCCeEEEE
Q 004203          186 GSRDF-----YRPIASIAFHASGELLAV----AS--------------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVH  242 (768)
Q Consensus       186 ~~l~h-----~~~V~svafSPDG~~Lat----gS--------------dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVa  242 (768)
                      .....     ...++.++++|+|+++++    +.              .+.|+.||..+++...    +. .....+.++
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~----~~-~~~~p~gl~  194 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR----MA-DLDHPNGLA  194 (305)
T ss_dssp             EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE----EE-EESSEEEEE
T ss_pred             EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE----Ee-cCCCCcceE
Confidence            33221     234678999999998775    32              1347777776655322    22 345678999


Q ss_pred             EccCCCeEEEEE
Q 004203          243 FHPHAAPLLLTA  254 (768)
Q Consensus       243 FSPDG~~LlaS~  254 (768)
                      |+|||+.|+++.
T Consensus       195 ~spdg~~lyv~~  206 (305)
T 3dr2_A          195 FSPDEQTLYVSQ  206 (305)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             EcCCCCEEEEEe
Confidence            999999776654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.18  E-value=5.9e-05  Score=84.33  Aligned_cols=134  Identities=12%  Similarity=-0.030  Sum_probs=97.2

Q ss_pred             CCCCEEEEEeCC-----CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----------CCCeEEEEECCC
Q 004203          117 PDGKTLASTHGD-----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------LDHEVRLWNAST  181 (768)
Q Consensus       117 PDG~~LaSgS~D-----gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS----------~DgtVrLWDl~s  181 (768)
                      ++++++++....     +.|.++|..+++.+..+..-..+  .+.++| |+++++.+.          .++.|.++|..+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            588888777653     69999999999999988754444  799999 777666654          467899999999


Q ss_pred             CcEEEEecCC--------CCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeec-----CCCCeEEEEEcc
Q 004203          182 AECIGSRDFY--------RPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLR-----TRRSLRAVHFHP  245 (768)
Q Consensus       182 g~~i~~l~h~--------~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~-----h~~~V~sVaFSP  245 (768)
                      ++.+..+...        .....++|+|||++|+++..   +.|.++|+.+.+.... ..+.+     ....-..+.+++
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~-I~v~g~~~~~p~g~~~~v~~~~  237 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRM-LDVPDCYHIFPASPTVFYMNCR  237 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE-EECCSEEEEEEEETTEEEEEET
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEE-EEcCCceeeccCCCcEEEEEcC
Confidence            9998876532        23457899999999999873   3599999999876441 11100     001123467888


Q ss_pred             CCCeEEEEE
Q 004203          246 HAAPLLLTA  254 (768)
Q Consensus       246 DG~~LlaS~  254 (768)
                      ||+.+++..
T Consensus       238 dG~~~~V~~  246 (426)
T 3c75_H          238 DGSLARVDF  246 (426)
T ss_dssp             TSSEEEEEC
T ss_pred             CCCEEEEEC
Confidence            998666554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.14  E-value=4.9e-05  Score=79.64  Aligned_cols=173  Identities=8%  Similarity=-0.002  Sum_probs=115.1

Q ss_pred             CCCEEEEEeCCC--eEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           80 ARRGLASWVEAE--SLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~Dg--sIrlWd~~t~~L~g---H~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ++...++.+.++  .|+.+|++++++..   -..........++++.|+.... ++.+.+||.++.+.+..+.... .-+
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~  130 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGW  130 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCC
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-Cce
Confidence            345555666655  89999999884221   1223333333334667766654 8899999999999999887533 223


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC------CCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccc
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY------RPIASIAFHASGELLAVAS--GHKLYIWRYNMREET  225 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~------~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~  225 (768)
                      .++  + +++.|+.+..++.|+++|..+.+.+..+...      ..++.+.|. +|+ |.+..  ++.|.+.|..+++..
T Consensus       131 glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~  205 (262)
T 3nol_A          131 GLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVT  205 (262)
T ss_dssp             CEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEE
T ss_pred             EEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEE
Confidence            344  4 5555555555788999999999888876431      345567887 675 44444  456999999998764


Q ss_pred             cCCeEee----------cCCCCeEEEEEccCCCeEEEEEeeCCc
Q 004203          226 SSPRIVL----------RTRRSLRAVHFHPHAAPLLLTAEVNDL  259 (768)
Q Consensus       226 ~~~~~l~----------~h~~~V~sVaFSPDG~~LlaS~svwdl  259 (768)
                      ... .+.          ....-.+.|+|+|+++.|++++..|.-
T Consensus       206 ~~I-d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~  248 (262)
T 3nol_A          206 GII-DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPK  248 (262)
T ss_dssp             EEE-ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred             EEE-ECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence            411 110          112456999999999999999987753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.14  E-value=2.6e-07  Score=100.41  Aligned_cols=140  Identities=11%  Similarity=0.006  Sum_probs=75.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC-cE-
Q 004203           80 ARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT-PW-  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~L----~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~-V~-  153 (768)
                      .+..++.++.|+.|..||..++++    ..  +.+.+..+..+++.+++++.|+.|+.||.++|+.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            467788889999999999988742    22  45555556668888888889999999999999887766543211 10 


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcccc
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETS  226 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~  226 (768)
                      ...+.  ++..+++++.|+.|+.||.++|+.+..+.....   ..++|++..|++++. +.|+.||.++++...
T Consensus        86 sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           86 SPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             CSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred             CceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence            00111  345677888899999999999998877654332   345678888888774 559999999887543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.10  E-value=0.00043  Score=82.24  Aligned_cols=225  Identities=11%  Similarity=0.034  Sum_probs=126.6

Q ss_pred             eEEEEeCCCC-CCC-CCC-CCeEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCeE--EEEEec-CCCCcEEEEEccC
Q 004203           92 SLHHLRPKYC-PLS-PPP-RSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSC--LKVLHG-HRRTPWVVRFHPL  160 (768)
Q Consensus        92 sIrlWd~~t~-~L~-gH~-~~VtslafSPDG~~LaSgS~D-----gtVrVWDl~tg~~--l~~l~g-H~g~V~sVafSP~  160 (768)
                      .|.++|+.++ +.. .+- .....++|+|||+.|+....|     ..|+++++.+++.  ...+.. .......+.|+| 
T Consensus       202 ~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-  280 (751)
T 2xe4_A          202 TIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-  280 (751)
T ss_dssp             EEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-
T ss_pred             EEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-
Confidence            5999999887 532 111 123468999999988887765     3799999988742  334432 223456789999 


Q ss_pred             CCCEEEEEeC---CCeEEEEECCCCc--E--EEEec-CCCCeEEEEEcCCCCEEEEEE-CC-----eEEEEEcCCCcccc
Q 004203          161 NPTIIASGSL---DHEVRLWNASTAE--C--IGSRD-FYRPIASIAFHASGELLAVAS-GH-----KLYIWRYNMREETS  226 (768)
Q Consensus       161 dg~lLaSgS~---DgtVrLWDl~sg~--~--i~~l~-h~~~V~svafSPDG~~LatgS-dd-----~I~IWDl~t~~~~~  226 (768)
                      |+++|+..+.   ...|+++|+.+++  .  ..... ......++.|+. |+.|+..+ .+     +|.++|+.+...  
T Consensus       281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~--  357 (751)
T 2xe4_A          281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD--  357 (751)
T ss_dssp             TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC--
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc--
Confidence            8887776553   3479999998762  3  22222 234445555543 56555554 32     277777764311  


Q ss_pred             CCeE-eecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecC-------CCCC-CCCccc
Q 004203          227 SPRI-VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGA-------HSSS-HPGLAE  297 (768)
Q Consensus       227 ~~~~-l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~-------~s~d-~~~L~~  297 (768)
                       ... +..+...+.--.|++++..|+++.......                    .+.+.+.       ..+. ...+. 
T Consensus       358 -~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~--------------------~l~~~dl~~~~~~~~~g~~~~~l~-  415 (751)
T 2xe4_A          358 -WSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLT--------------------RIWTMMADSQDGVFKAGTGLREVV-  415 (751)
T ss_dssp             -CCCEEECCCSSEEEEEEEECSSEEEEEEEETTEE--------------------EEEEEECCTTTSCCCTTTCCEECC-
T ss_pred             -ceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEE--------------------EEEEEecccccccccCCccceEEC-
Confidence             112 334444333233444566777666432211                    1111111       0000 00000 


Q ss_pred             ccCCCCCCceEEEE------ecCCCEEEEEecCCCCCcceEEeccCCCceeeeec
Q 004203          298 EVPLITPPFLRPSF------VRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLT  346 (768)
Q Consensus       298 ~~~~~slpil~psF------SpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~~  346 (768)
                      .    +-......|      +.|++.+++...+...+...+..+..+...++|..
T Consensus       416 l----~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~  466 (751)
T 2xe4_A          416 M----EEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKV  466 (751)
T ss_dssp             C----CCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEE
T ss_pred             C----CCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence            0    001112233      56888999988888888888888877666555553

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.08  E-value=0.00011  Score=77.07  Aligned_cols=161  Identities=8%  Similarity=-0.010  Sum_probs=108.9

Q ss_pred             CCeEEEEeCCCCCCC-----CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCC
Q 004203           90 AESLHHLRPKYCPLS-----PPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT  163 (768)
Q Consensus        90 DgsIrlWd~~t~~L~-----gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~  163 (768)
                      +..|...|..+++..     +.......+++.  ++.|+.+.. ++.|.++|.++++.+..+......  ...+++ |++
T Consensus        43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~  117 (266)
T 2iwa_A           43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGK  117 (266)
T ss_dssp             TCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSS
T ss_pred             CCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCC
Confidence            578999999987422     111222345554  556665554 889999999999999888632122  234556 555


Q ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCC------CCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEeec--
Q 004203          164 IIASGSLDHEVRLWNASTAECIGSRDFY------RPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLR--  233 (768)
Q Consensus       164 lLaSgS~DgtVrLWDl~sg~~i~~l~h~------~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l~~--  233 (768)
                      .++.+..++.|.++|..+.+.+..+...      ...+.+.|. +| .|++..  ++.|.+.|..+++.... ..+.+  
T Consensus       118 ~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~-I~~~g~~  194 (266)
T 2iwa_A          118 ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGW-ILLPNLR  194 (266)
T ss_dssp             SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEE-EECHHHH
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEE-EECCCcc
Confidence            5555557889999999999888776522      246788888 67 455544  45699999999876441 11111  


Q ss_pred             ---------CCCCeEEEEEccCCCeEEEEEeeCC
Q 004203          234 ---------TRRSLRAVHFHPHAAPLLLTAEVND  258 (768)
Q Consensus       234 ---------h~~~V~sVaFSPDG~~LlaS~svwd  258 (768)
                               .....+.|+|+|+++.+++++..|+
T Consensus       195 ~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~  228 (266)
T 2iwa_A          195 KKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP  228 (266)
T ss_dssp             HHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             cccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence                     1146799999999999999887553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.05  E-value=4e-05  Score=84.05  Aligned_cols=87  Identities=11%  Similarity=-0.101  Sum_probs=65.2

Q ss_pred             eEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEeCCCCeEEEEEecC-------CC
Q 004203           92 SLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGH-------RR  150 (768)
Q Consensus        92 sIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS----------~DgtVrVWDl~tg~~l~~l~gH-------~g  150 (768)
                      .|.++|..+.+    +..-..+  .+.|+|||++++++.          .++.|.+||+.+++.+..+.-.       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            77788887763    2222234  799999999999886          3789999999999999888643       13


Q ss_pred             CcEEEEEccCCCCEEEEEeC--CCeEEE--EECCC
Q 004203          151 TPWVVRFHPLNPTIIASGSL--DHEVRL--WNAST  181 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~--DgtVrL--WDl~s  181 (768)
                      ....+.++| |+++++.+..  +..|.+  +|+.+
T Consensus       125 ~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          125 RVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh
Confidence            466789999 8887777764  356878  87743

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.02  E-value=0.00026  Score=73.45  Aligned_cols=172  Identities=13%  Similarity=0.091  Sum_probs=113.5

Q ss_pred             CCCEEEEEeCC--CeEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           80 ARRGLASWVEA--ESLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        80 ~g~~LvSgs~D--gsIrlWd~~t~~L~g---H~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ++....+.+..  ..|+.+|++++++..   -...........+++.|+... .++.+.+||.++.+.+..+.... .-+
T Consensus        30 ~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gw  108 (243)
T 3mbr_X           30 RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGW  108 (243)
T ss_dssp             TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCC
T ss_pred             CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-Cce
Confidence            34445555554  489999999885321   112233333333456666554 48999999999999999987543 334


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC------CCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccc
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY------RPIASIAFHASGELLAVAS--GHKLYIWRYNMREET  225 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~------~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~  225 (768)
                      .++  + +++.|+.+..++.|.++|..+.+.+..+...      ..++.+.|. +|+.. +..  .+.|.+.|..+++..
T Consensus       109 glt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly-anvw~s~~I~vIDp~tG~V~  183 (243)
T 3mbr_X          109 ALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL-ANVWLTSRIARIDPASGKVV  183 (243)
T ss_dssp             EEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EEETTTTEEEEECTTTCBEE
T ss_pred             EEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE-EEECCCCeEEEEECCCCCEE
Confidence            555  4 4555555556889999999999888776532      355677776 66543 443  566999999998764


Q ss_pred             cCCeEee-----------cCCCCeEEEEEccCCCeEEEEEeeCC
Q 004203          226 SSPRIVL-----------RTRRSLRAVHFHPHAAPLLLTAEVND  258 (768)
Q Consensus       226 ~~~~~l~-----------~h~~~V~sVaFSPDG~~LlaS~svwd  258 (768)
                      .. ..+.           ....-.+.|+|+|+++.|++++..|.
T Consensus       184 ~~-idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp  226 (243)
T 3mbr_X          184 AW-IDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP  226 (243)
T ss_dssp             EE-EECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred             EE-EECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            41 1111           11235799999999999999998774

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.98  E-value=0.00015  Score=83.94  Aligned_cols=171  Identities=8%  Similarity=-0.063  Sum_probs=121.1

Q ss_pred             CCEEE-EEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEE-C-CCCCEEEEEe------------------CCCeEEEE
Q 004203           81 RRGLA-SWVEAESLHHLRPKYCPL-----SPPPRSTIAAAF-S-PDGKTLASTH------------------GDHTVKII  134 (768)
Q Consensus        81 g~~Lv-Sgs~DgsIrlWd~~t~~L-----~gH~~~Vtslaf-S-PDG~~LaSgS------------------~DgtVrVW  134 (768)
                      +++++ +-..+..|.+.|+.+.+.     .........+++ + |++++++.++                  .++.+.++
T Consensus       101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI  180 (595)
T 1fwx_A          101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  180 (595)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence            44444 444566799999988641     123456889998 5 9999999885                  35689999


Q ss_pred             eCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC--------------------------------------eEEE
Q 004203          135 DCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH--------------------------------------EVRL  176 (768)
Q Consensus       135 Dl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg--------------------------------------tVrL  176 (768)
                      |.++.+....+.--. ....++++| +++++++.+.+.                                      .|.+
T Consensus       181 D~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          181 DADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             ETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             ECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            999999888876433 456689999 888888877543                                      4777


Q ss_pred             EECCC--CcE-EEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccc--------cCCeEeecCCCCeEEEEE
Q 004203          177 WNAST--AEC-IGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREET--------SSPRIVLRTRRSLRAVHF  243 (768)
Q Consensus       177 WDl~s--g~~-i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~--------~~~~~l~~h~~~V~sVaF  243 (768)
                      .|.++  ++. +..+.......++.++|||++++++.  ++.|.++|+.+.+..        ........-....+.++|
T Consensus       259 ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF  338 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF  338 (595)
T ss_dssp             EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEE
T ss_pred             EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEE
Confidence            88877  444 55555555667899999999999988  455999999865310        001112233467899999


Q ss_pred             ccCCCeEEEEE
Q 004203          244 HPHAAPLLLTA  254 (768)
Q Consensus       244 SPDG~~LlaS~  254 (768)
                      +||| ++.++.
T Consensus       339 ~~dG-~aY~t~  348 (595)
T 1fwx_A          339 DGRG-NAYTSL  348 (595)
T ss_dssp             CTTS-EEEEEE
T ss_pred             CCCC-eEEEEE
Confidence            9999 555544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.97  E-value=0.00072  Score=68.75  Aligned_cols=143  Identities=12%  Similarity=0.016  Sum_probs=95.9

Q ss_pred             CeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 004203          109 STIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS  187 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~  187 (768)
                      .+.+++|+++++.|+.+. .++.|.++|++++.....+.........++++++++.++++-...+.|.++|+........
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            467999999766666554 5789999999876554444333356789999994455555556677999999875433322


Q ss_pred             ecCC-CCeEEEEEcCCCCEEEEEEC----CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          188 RDFY-RPIASIAFHASGELLAVASG----HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       188 l~h~-~~V~svafSPDG~~LatgSd----d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      .... .....++++|++..|+.+..    +.|.+++++.....   ............++|+|++..|.++.
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~---~~~~~~~~~P~gia~d~~~~~lyv~d  185 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR---ILAQDNLGLPNGLTFDAFSSQLCWVD  185 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE---EEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE---EEEECCCCCCcEEEEcCCCCEEEEEE
Confidence            3222 45688999998777766653    35888887653321   11112335689999999988776654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.96  E-value=0.00014  Score=85.48  Aligned_cols=160  Identities=13%  Similarity=0.141  Sum_probs=109.1

Q ss_pred             eEEEEeCCCCCC------CCCC-------CCeEEEEECCCC---CEEEEEeCCCeEEEEeCCCCeEEEEEecCC------
Q 004203           92 SLHHLRPKYCPL------SPPP-------RSTIAAAFSPDG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHR------  149 (768)
Q Consensus        92 sIrlWd~~t~~L------~gH~-------~~VtslafSPDG---~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~------  149 (768)
                      .|..+|.+++++      ..|.       .....+....||   +.++.++.+|.|+++|.++|+.+..++...      
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            477788877632      2231       223334444578   689999999999999999999887664221      


Q ss_pred             ----CC-c------------------------EEEEEccCCCCEEEEEeC------------------------------
Q 004203          150 ----RT-P------------------------WVVRFHPLNPTIIASGSL------------------------------  170 (768)
Q Consensus       150 ----g~-V------------------------~sVafSP~dg~lLaSgS~------------------------------  170 (768)
                          +. +                        ..++++| +..+++....                              
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence                00 0                        1468889 6666666432                              


Q ss_pred             -------------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCC
Q 004203          171 -------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRR  236 (768)
Q Consensus       171 -------------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~  236 (768)
                                   .+.|..||+.+++.+..+.+..++....+..++.++++++ ++.+++||.++++...  .....+..
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw--~~~~~~~~  520 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW--EAPTGTGV  520 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCC
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee--eeeCCCCc
Confidence                         2789999999999988887766666666777888888887 4569999999998754  12223333


Q ss_pred             CeEEEEEccCCCeEEEEE
Q 004203          237 SLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       237 ~V~sVaFSPDG~~LlaS~  254 (768)
                      .-.-+.|..+|+.+++..
T Consensus       521 ~~~p~~y~~~G~~~v~~~  538 (677)
T 1kb0_A          521 VAAPSTYMVDGRQYVSVA  538 (677)
T ss_dssp             CSCCEEEEETTEEEEEEE
T ss_pred             ccCCEEEEeCCEEEEEEe
Confidence            334567788998666543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.91  E-value=0.0009  Score=70.11  Aligned_cols=170  Identities=8%  Similarity=0.068  Sum_probs=104.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCC-----------------------CCCCeEEEEECC-CCCEEEEEeCCCeEEEEeC
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLSP-----------------------PPRSTIAAAFSP-DGKTLASTHGDHTVKIIDC  136 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~g-----------------------H~~~VtslafSP-DG~~LaSgS~DgtVrVWDl  136 (768)
                      +..+++...++.|..|+.....+..                       ....+.++++.+ +| .|+.+...+.|.++|.
T Consensus        30 g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~~~~i~~~d~  108 (322)
T 2fp8_A           30 NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDCYYHLSVVGS  108 (322)
T ss_dssp             CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEETTTEEEEECT
T ss_pred             CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEECCCCEEEEeC
Confidence            3335556666777777765542210                       013578999998 55 4555555566899998


Q ss_pred             CCCeEEEEEec-----CCCCcEEEEEccCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEecCCCCe
Q 004203          137 QTGSCLKVLHG-----HRRTPWVVRFHPLNPTIIASGSL-----------------DHEVRLWNASTAECIGSRDFYRPI  194 (768)
Q Consensus       137 ~tg~~l~~l~g-----H~g~V~sVafSP~dg~lLaSgS~-----------------DgtVrLWDl~sg~~i~~l~h~~~V  194 (768)
                      ++++. ..+..     .......+++.+.++++.++-..                 ++.|..||..+++.......-...
T Consensus       109 ~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p  187 (322)
T 2fp8_A          109 EGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP  187 (322)
T ss_dssp             TCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCC
T ss_pred             CCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccC
Confidence            76643 22221     11346778898744566655322                 367999998877654433322345


Q ss_pred             EEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          195 ASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       195 ~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ..++|+|+|++|+++.  .++|++||+....... ...+..... ...++++++|+.+++..
T Consensus       188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEec
Confidence            6799999999877775  3569999987532111 111112223 78899999998665554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.87  E-value=0.00061  Score=80.90  Aligned_cols=144  Identities=13%  Similarity=0.077  Sum_probs=92.0

Q ss_pred             CCCC-CeEEEEEC-CCCCEEEEEeC-C----CeEEEEeCCCC-eEEE-EEecCCCCcEEEEEccCCCCEEEEEeCC----
Q 004203          105 PPPR-STIAAAFS-PDGKTLASTHG-D----HTVKIIDCQTG-SCLK-VLHGHRRTPWVVRFHPLNPTIIASGSLD----  171 (768)
Q Consensus       105 gH~~-~VtslafS-PDG~~LaSgS~-D----gtVrVWDl~tg-~~l~-~l~gH~g~V~sVafSP~dg~lLaSgS~D----  171 (768)
                      +|.- .+...+|| |||++|+.... +    .+|+++|++++ +.+. .+..   ....+.|+| |++.|+....|    
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~Wsp-Dg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGP-DHTSLFYVTKDETLR  245 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECS-STTEEEEEEECTTCC
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEec-CCCEEEEEEECCCCC
Confidence            4443 68899999 99999886543 2    36999999998 6321 1221   134578999 88777776665    


Q ss_pred             -CeEEEEECCCCcE--EEEe--cCCCCeEEEEEcCCCCEEEEEEC---C-eEEEEEcCCCccccCC--eEeec-CCCCeE
Q 004203          172 -HEVRLWNASTAEC--IGSR--DFYRPIASIAFHASGELLAVASG---H-KLYIWRYNMREETSSP--RIVLR-TRRSLR  239 (768)
Q Consensus       172 -gtVrLWDl~sg~~--i~~l--~h~~~V~svafSPDG~~LatgSd---d-~I~IWDl~t~~~~~~~--~~l~~-h~~~V~  239 (768)
                       ..|+++++.+++.  ...+  ........+.|+|||++|+..+.   . .|+++|+.++..  ..  ..+.. ......
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~--~~~~~~l~~~~~~~~~  323 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA--HNTLEIVRPREKGVRY  323 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT--CCCEEESSCCCTTCCE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC--CceeEEeecCCCCceE
Confidence             3689999988652  2222  23345678899999998887762   1 299999987531  11  12222 234455


Q ss_pred             EEEEccCCCeEEEEEe
Q 004203          240 AVHFHPHAAPLLLTAE  255 (768)
Q Consensus       240 sVaFSPDG~~LlaS~s  255 (768)
                      ++.|+. |+.|++.++
T Consensus       324 s~~~~~-g~~l~~~t~  338 (751)
T 2xe4_A          324 DVQMHG-TSHLVILTN  338 (751)
T ss_dssp             EEEEET-TTEEEEEEC
T ss_pred             EEeeee-CCEEEEEeC
Confidence            555543 665665554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.84  E-value=0.0005  Score=81.04  Aligned_cols=161  Identities=12%  Similarity=0.136  Sum_probs=105.8

Q ss_pred             eEEEEeCCCCCC------CCCC-------CCeEEEEECCCCC---EEEEEeCCCeEEEEeCCCCeEEEEEecCC------
Q 004203           92 SLHHLRPKYCPL------SPPP-------RSTIAAAFSPDGK---TLASTHGDHTVKIIDCQTGSCLKVLHGHR------  149 (768)
Q Consensus        92 sIrlWd~~t~~L------~gH~-------~~VtslafSPDG~---~LaSgS~DgtVrVWDl~tg~~l~~l~gH~------  149 (768)
                      .|..||.++++.      ..|.       ..+.......+|+   .++.++.+|.++++|.++|+.+...+...      
T Consensus       276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  355 (689)
T 1yiq_A          276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG  355 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence            388888887732      2221       2222233333675   78899999999999999999874332110      


Q ss_pred             --------------------------------C-CcEEEEEccCCCCEEEEEeC--------------------------
Q 004203          150 --------------------------------R-TPWVVRFHPLNPTIIASGSL--------------------------  170 (768)
Q Consensus       150 --------------------------------g-~V~sVafSP~dg~lLaSgS~--------------------------  170 (768)
                                                      + .-..++|+| +..+++....                          
T Consensus       356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  434 (689)
T 1yiq_A          356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL  434 (689)
T ss_dssp             EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred             cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccccCc
Confidence                                            0 011268888 6666665422                          


Q ss_pred             -------------------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeE
Q 004203          171 -------------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       171 -------------------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~  230 (768)
                                         ++.|+.||+.+|+.+..+.+..+...-.+...+.++++++. +.++.||.++++...  ..
T Consensus       435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw--~~  512 (689)
T 1yiq_A          435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW--EQ  512 (689)
T ss_dssp             EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE--EE
T ss_pred             cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccce--ee
Confidence                               37899999999999888776655555566777888888884 559999999998754  11


Q ss_pred             eecCCCCeEEEEEccCCCeEEEEEe
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...+...-.-+.|..||+.+++...
T Consensus       513 ~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          513 PAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             ECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eCCCCcccCceEEEECCEEEEEEEe
Confidence            2223223345777899987766543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.74  E-value=1.5e-05  Score=86.54  Aligned_cols=127  Identities=16%  Similarity=0.102  Sum_probs=66.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CeE
Q 004203          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR--PIA  195 (768)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~--~V~  195 (768)
                      ++..+++++.|+.|+.||.++|+.+..+..  +.+.+..+.. ++.++++++.|+.|+.||.++|+.+..+....  .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            678999999999999999999999988876  4555555556 67778888899999999999998776654221  110


Q ss_pred             -EEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          196 -SIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       196 -svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                       ...+. ++..|++++ ++.|+.||..+++...   ....+.    .+.++|++..+++++.
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w---~~~~~~----~~~~~p~~~~v~~~~~  138 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ---TLSSAF----ADSLSPSTSLLYLGRT  138 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEE
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE---EecCCC----cccccccCCEEEEEec
Confidence             11111 334566665 5569999999887644   111121    2456677776766543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.70  E-value=0.0019  Score=67.70  Aligned_cols=133  Identities=11%  Similarity=0.105  Sum_probs=90.3

Q ss_pred             eEEEEECCCCCEEEEEeCCC--eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 004203          110 TIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS  187 (768)
Q Consensus       110 VtslafSPDG~~LaSgS~Dg--tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~  187 (768)
                      ...+.|+ ++.++.+.+.++  .|+++|+++++.+..+.-.. ........++++++.+..-.++.+.+||.++.+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4789999 776666777766  89999999999988886443 3433333442345555555688999999999999999


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCC---CCeEEEEEccCCC
Q 004203          188 RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR---RSLRAVHFHPHAA  248 (768)
Q Consensus       188 l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~---~~V~sVaFSPDG~  248 (768)
                      +.....  ...+++|++.|+.+. +++|+++|..+.+... ...+....   ..++.+.|. +|+
T Consensus       123 i~~~~e--G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~-~I~V~~~g~~~~~lNELe~~-~G~  183 (262)
T 3nol_A          123 FNYDGE--GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVR-TITVTAHGEELPELNELEWV-DGE  183 (262)
T ss_dssp             EECSSC--CCCEEECSSCEEECCSSSEEEEECTTTCSEEE-EEECEETTEECCCEEEEEEE-TTE
T ss_pred             EECCCC--ceEEecCCCEEEEECCCCeEEEEcCCCCeEEE-EEEeccCCccccccceeEEE-CCE
Confidence            876542  234456788777665 4459999998877644 11222112   445667886 675

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.64  E-value=0.013  Score=60.94  Aligned_cols=162  Identities=12%  Similarity=0.105  Sum_probs=93.4

Q ss_pred             EEeCCCeEEEEeCCCCC--CCCCCCCeEEEEECCCCCEEEEEeCC--CeEEEEeCCCCeEEEEEec-CCCCcEEEEEccC
Q 004203           86 SWVEAESLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTLASTHGD--HTVKIIDCQTGSCLKVLHG-HRRTPWVVRFHPL  160 (768)
Q Consensus        86 Sgs~DgsIrlWd~~t~~--L~gH~~~VtslafSPDG~~LaSgS~D--gtVrVWDl~tg~~l~~l~g-H~g~V~sVafSP~  160 (768)
                      +-...+.|..||.....  +........+++++++|+++++....  ..|..+|..+++....... .......++..+ 
T Consensus        48 ~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-  126 (306)
T 2p4o_A           48 TNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-  126 (306)
T ss_dssp             EETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-
T ss_pred             EeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-
Confidence            33355666666654331  11123468899999999966555432  3577788888875443332 122334555555 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcE-EE-Ee---------cCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccC
Q 004203          161 NPTIIASGSLDHEVRLWNASTAEC-IG-SR---------DFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSS  227 (768)
Q Consensus       161 dg~lLaSgS~DgtVrLWDl~sg~~-i~-~l---------~h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~  227 (768)
                      ++..+++-..++.|+.+|..+++. +. ..         ..-...+.+  +||++.|+++..  +.|++||+........
T Consensus       127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~  204 (306)
T 2p4o_A          127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE  204 (306)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC
T ss_pred             CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc
Confidence            555555555688999999876532 11 10         011233455  889998888773  4599999975211111


Q ss_pred             CeEeecCCCCeEEEEEccCCCeEE
Q 004203          228 PRIVLRTRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPDG~~Ll  251 (768)
                      ...+ ........++++++|+.++
T Consensus       205 ~~~~-~~~~~P~gi~vd~dG~l~v  227 (306)
T 2p4o_A          205 PEIF-VEQTNIDDFAFDVEGNLYG  227 (306)
T ss_dssp             CEEE-EESCCCSSEEEBTTCCEEE
T ss_pred             cEEE-eccCCCCCeEECCCCCEEE
Confidence            1111 1124567789999997544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.63  E-value=0.0017  Score=68.07  Aligned_cols=132  Identities=8%  Similarity=0.005  Sum_probs=90.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q 004203          110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD  189 (768)
Q Consensus       110 VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~  189 (768)
                      ...+.|+ ++.++.+.+.++.|+++|+++++.+..+ - ..........++++++....-.++.+.+||.++.+.+.++.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            5788998 4666677778899999999999988776 2 23343322333345666666678899999999999999987


Q ss_pred             CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCC---CCeEEEEEccCCC
Q 004203          190 FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR---RSLRAVHFHPHAA  248 (768)
Q Consensus       190 h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~---~~V~sVaFSPDG~  248 (768)
                      ....-..+  ++|++.|+.+. +++|+++|..+.+... ...+....   ..++.+.|. +|+
T Consensus       134 ~~~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~-~I~V~~~g~~v~~lNeLe~~-dG~  192 (268)
T 3nok_A          134 YSGEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVG-AVQVKLRGQPVELINELECA-NGV  192 (268)
T ss_dssp             CSSCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEE-EEECEETTEECCCEEEEEEE-TTE
T ss_pred             CCCceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEE-EEEeCCCCcccccccccEEe-CCE
Confidence            65433334  46788887776 4559999998877644 11222222   345777887 775

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.62  E-value=0.00083  Score=79.00  Aligned_cols=78  Identities=10%  Similarity=0.132  Sum_probs=59.7

Q ss_pred             EEEEECCCCCEEEEEeCCC-------------------eEEEEeCCCCeEEEEEecCC---------CCcEEEEEccCCC
Q 004203          111 IAAAFSPDGKTLASTHGDH-------------------TVKIIDCQTGSCLKVLHGHR---------RTPWVVRFHPLNP  162 (768)
Q Consensus       111 tslafSPDG~~LaSgS~Dg-------------------tVrVWDl~tg~~l~~l~gH~---------g~V~sVafSP~dg  162 (768)
                      ..++++|++.+|+.+..++                   .|..+|.++|+.+..++...         .....+.... ++
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG  324 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AG  324 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TT
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CC
Confidence            3578999999999888764                   59999999999988876421         1222334444 56


Q ss_pred             ---CEEEEEeCCCeEEEEECCCCcEEEEec
Q 004203          163 ---TIIASGSLDHEVRLWNASTAECIGSRD  189 (768)
Q Consensus       163 ---~lLaSgS~DgtVrLWDl~sg~~i~~l~  189 (768)
                         ..++.++.+|.|+++|.++|+.+..+.
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence               688999999999999999999876653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.54  E-value=0.019  Score=58.15  Aligned_cols=165  Identities=12%  Similarity=-0.025  Sum_probs=100.3

Q ss_pred             EEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEE
Q 004203           83 GLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF  157 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~~L----~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVaf  157 (768)
                      ..++-...+.|..++......    ........++++++++..|+.+ ...+.|.++|++.......+.........+++
T Consensus        50 ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~v  129 (267)
T 1npe_A           50 VYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVT  129 (267)
T ss_dssp             EEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             EEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEE
Confidence            333444567788888765421    1223568899999976666655 45789999998754433333322246788999


Q ss_pred             ccCCCCEEEEEeC--CCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEee
Q 004203          158 HPLNPTIIASGSL--DHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVL  232 (768)
Q Consensus       158 SP~dg~lLaSgS~--DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~l~  232 (768)
                      +|+++.++++...  .+.|..+++......... ..-.....++|++++..|+++..  +.|.++|++.....    .+.
T Consensus       130 d~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~----~~~  205 (267)
T 1npe_A          130 DPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVL  205 (267)
T ss_dssp             ETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEE
T ss_pred             eeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE----EEe
Confidence            9934444444333  468888888643322222 22345788999999988887774  45999998754321    122


Q ss_pred             cCCCCeEEEEEccCCCeEEEE
Q 004203          233 RTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       233 ~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ........+++.  +..+..+
T Consensus       206 ~~~~~P~gi~~d--~~~lyva  224 (267)
T 1npe_A          206 EGLQYPFAVTSY--GKNLYYT  224 (267)
T ss_dssp             ECCCSEEEEEEE--TTEEEEE
T ss_pred             cCCCCceEEEEe--CCEEEEE
Confidence            223445666653  4445544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.52  E-value=0.0011  Score=68.37  Aligned_cols=159  Identities=12%  Similarity=0.023  Sum_probs=105.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa  156 (768)
                      +..|+.+..++.|..+|.. ++    +..+...+.++...++|. |+.++.++.|..||.+ ++.+..+......+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            5667778888889889887 42    223344566677777776 5667888999999998 887777766566677777


Q ss_pred             EccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCC
Q 004203          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR  235 (768)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~  235 (768)
                      +.+ ++.+++..   +.|..+| .+++...... ....+.++..+++|.+.+...+++|..+|.. ++...   ......
T Consensus       184 ~d~-~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~-g~~~~---~~~~~~  254 (330)
T 3hxj_A          184 IGK-DGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD-GTEKW---RFKTGK  254 (330)
T ss_dssp             ECT-TCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTT-SCEEE---EEECSS
T ss_pred             EcC-CCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCC-CCEeE---EeeCCC
Confidence            766 66655443   7799999 7777666554 3356778888988876655556778888743 33211   222223


Q ss_pred             CCeEEEEEccCCCeEE
Q 004203          236 RSLRAVHFHPHAAPLL  251 (768)
Q Consensus       236 ~~V~sVaFSPDG~~Ll  251 (768)
                      ..+..+.+.++|..++
T Consensus       255 ~~~~~~~~~~~g~l~v  270 (330)
T 3hxj_A          255 RIESSPVIGNTDTIYF  270 (330)
T ss_dssp             CCCSCCEECTTSCEEE
T ss_pred             CccccceEcCCCeEEE
Confidence            3344556666776443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.49  E-value=0.0016  Score=68.37  Aligned_cols=134  Identities=13%  Similarity=0.053  Sum_probs=89.1

Q ss_pred             eEEEEECCCCCEEEEEeC--CCeEEEEeCCCCeEEEEEecCCC-CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203          110 TIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVLHGHRR-TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (768)
Q Consensus       110 VtslafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~l~gH~g-~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~  186 (768)
                      ...++|++|+.++++.+.  +..|.++|+.+++.+..+.-... ....+++.  ++.+.++.-.++.+.++|..+.+.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            589999998744444443  68999999999999888753222 12234443  34555556668899999999999988


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecC---CCCeEEEEEccCCC
Q 004203          187 SRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRT---RRSLRAVHFHPHAA  248 (768)
Q Consensus       187 ~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h---~~~V~sVaFSPDG~  248 (768)
                      .+... .-....+++||+.|+++. ++.|.++|..+.+... ...+...   -..++.+.|. +|+
T Consensus       101 ~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~-~I~Vg~~~~p~~~~nele~~-dg~  163 (266)
T 2iwa_A          101 NFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIK-KHNVKYNGHRVIRLNELEYI-NGE  163 (266)
T ss_dssp             EEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEE-EEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEE-EEEECCCCcccccceeEEEE-CCE
Confidence            87654 112344667888777665 3459999998876543 1111111   1247788888 674

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.47  E-value=0.097  Score=57.26  Aligned_cols=165  Identities=10%  Similarity=-0.001  Sum_probs=110.0

Q ss_pred             EEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCC----eEEEEEecCCCCcEEEEE
Q 004203           86 SWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRF  157 (768)
Q Consensus        86 Sgs~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg----~~l~~l~gH~g~V~sVaf  157 (768)
                      ..+....|+..++....   +......+.+++|++.+..|+.. ...+.|+.++++..    .....+.........+++
T Consensus        87 l~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav  166 (400)
T 3p5b_L           87 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  166 (400)
T ss_dssp             EEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred             EEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence            34445678888876552   23445678999999966666655 45789999998752    233444434456788999


Q ss_pred             ccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeec
Q 004203          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      .+.+++++++-...+.|.+.|+........+. .-.....++++|.+.+|+....   ++|...+++......   ....
T Consensus       167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~---~~~~  243 (400)
T 3p5b_L          167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTE  243 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE---EECS
T ss_pred             EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE---EEEC
Confidence            87556666666677899999998665444433 3345789999998877776662   348888886543211   2223


Q ss_pred             CCCCeEEEEEccCCCeEEEE
Q 004203          234 TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .-...+.|++++++..|..+
T Consensus       244 ~l~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          244 NIQWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEE
Confidence            34678999999988877665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.46  E-value=0.021  Score=60.17  Aligned_cols=162  Identities=10%  Similarity=-0.005  Sum_probs=102.9

Q ss_pred             CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCC----CeEEEEEecCCCCcEEEEEccCC
Q 004203           90 AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQT----GSCLKVLHGHRRTPWVVRFHPLN  161 (768)
Q Consensus        90 DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~t----g~~l~~l~gH~g~V~sVafSP~d  161 (768)
                      ...|+..++....   +...-....+++|+++++.|+.+ ...+.|+.+|+++    ......+......+..+++.+.+
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            3456777766542   22334567899999976655554 4578999999876    22233343333456789998745


Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecCCCC
Q 004203          162 PTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRS  237 (768)
Q Consensus       162 g~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h~~~  237 (768)
                      ++++++-..++.|.+.|+.......... .-.....++++|++..|+.+..   ++|..++++......   .....-..
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~---~~~~~~~~  165 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQW  165 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EECSSCSC
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE---EEECCCCC
Confidence            6666666677899999987654433332 3356789999998777766653   458888876543211   12223457


Q ss_pred             eEEEEEccCCCeEEEEE
Q 004203          238 LRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       238 V~sVaFSPDG~~LlaS~  254 (768)
                      .+.++|+|++..|..+-
T Consensus       166 P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          166 PNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             EEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeccCCEEEEEE
Confidence            88999999888776653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.45  E-value=0.0091  Score=65.07  Aligned_cols=165  Identities=9%  Similarity=-0.027  Sum_probs=109.5

Q ss_pred             EeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCC
Q 004203           87 WVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP  162 (768)
Q Consensus        87 gs~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg  162 (768)
                      .+....|+.+++....   +......+.+++|++.+..|+ +-...+.|+.++++.+.....+.........+++.+.++
T Consensus        92 ~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g  171 (386)
T 3v65_B           92 FANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD  171 (386)
T ss_dssp             EECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT
T ss_pred             eecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC
Confidence            3445678888876553   223345688999998655555 445678999999987765555543334566789988556


Q ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecCCCCe
Q 004203          163 TIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       163 ~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      .++++-...+.|.+.++........+. .-.....++++|++..|+....   ++|+.++++......   .....-...
T Consensus       172 ~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~P  248 (386)
T 3v65_B          172 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWP  248 (386)
T ss_dssp             EEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EECSSCSCE
T ss_pred             eEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCe
Confidence            666666667889999987554333332 2356789999998887777663   348888876543211   222334568


Q ss_pred             EEEEEccCCCeEEEEE
Q 004203          239 RAVHFHPHAAPLLLTA  254 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~  254 (768)
                      +.|+|+|++..|..+-
T Consensus       249 nGlavd~~~~~lY~aD  264 (386)
T 3v65_B          249 NGLTIDYAGRRMYWVD  264 (386)
T ss_dssp             EEEEEEGGGTEEEEEE
T ss_pred             eeEEEeCCCCEEEEEE
Confidence            9999999887776653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.45  E-value=0.00034  Score=81.03  Aligned_cols=163  Identities=10%  Similarity=0.088  Sum_probs=105.6

Q ss_pred             CCeEEEEeCCCCCCCCC---CCCeEEEEECCCCCEEEEEeCCC-------------------------------------
Q 004203           90 AESLHHLRPKYCPLSPP---PRSTIAAAFSPDGKTLASTHGDH-------------------------------------  129 (768)
Q Consensus        90 DgsIrlWd~~t~~L~gH---~~~VtslafSPDG~~LaSgS~Dg-------------------------------------  129 (768)
                      ++.+.++|.++.+....   .+.-..++++|||+++++++.+.                                     
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             CceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            44688888887531100   11345678999999999888543                                     


Q ss_pred             -eEEEEeCCC--CeE-EEEEecCCCCcEEEEEccCCCCEEEEE-eCCCeEEEEECCCCc------------EEEEecCCC
Q 004203          130 -TVKIIDCQT--GSC-LKVLHGHRRTPWVVRFHPLNPTIIASG-SLDHEVRLWNASTAE------------CIGSRDFYR  192 (768)
Q Consensus       130 -tVrVWDl~t--g~~-l~~l~gH~g~V~sVafSP~dg~lLaSg-S~DgtVrLWDl~sg~------------~i~~l~h~~  192 (768)
                       .|.|.|..+  ++. +..+... ....++.++| ||++++.+ ..+.+|.++|+.+.+            .........
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~  331 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  331 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred             CcEEEEeCcccCCceeEEEEecC-CCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence             477888777  544 4555432 3466789999 77765554 467899999999653            344455556


Q ss_pred             CeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCc------c-ccCCeEeecCCCC-----eEEEEEccCCCeEEEEEe
Q 004203          193 PIASIAFHASGELLAVAS--GHKLYIWRYNMRE------E-TSSPRIVLRTRRS-----LRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       193 ~V~svafSPDG~~LatgS--dd~I~IWDl~t~~------~-~~~~~~l~~h~~~-----V~sVaFSPDG~~LlaS~s  255 (768)
                      ...-++|+||| ++++..  ++.|.+||+.+..      . ......+..|..+     -..+.++|||++|++...
T Consensus       332 gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          332 GPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             CcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            77889999999 777776  5669999998721      1 1111122223221     122356899998887765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.41  E-value=0.0092  Score=61.76  Aligned_cols=134  Identities=12%  Similarity=0.055  Sum_probs=88.7

Q ss_pred             CeEEEEECCCCCEEEEEeCC--CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203          109 STIAAAFSPDGKTLASTHGD--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~D--gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~  186 (768)
                      -...+.|+. +.++.+.+.+  ..|+++|+++++.+..+.-... .......+.++++....-.++.+.+||.++.+.+.
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~   99 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA   99 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence            367999985 5555555554  4899999999999888764433 33333333245555566678899999999999999


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCC---CCeEEEEEccCCC
Q 004203          187 SRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR---RSLRAVHFHPHAA  248 (768)
Q Consensus       187 ~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~---~~V~sVaFSPDG~  248 (768)
                      ++.....-..+  ++|++.|+.+. +++|.++|..+.+... ...+..+.   ..++.+.|. +|+
T Consensus       100 ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~-~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X          100 RFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVG-SIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEE-EEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEE-EEEEccCCcccccceeeEEe-CCE
Confidence            98765533344  46677666655 4459999998876544 11222221   355667766 665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.38  E-value=0.017  Score=61.98  Aligned_cols=163  Identities=9%  Similarity=-0.043  Sum_probs=106.8

Q ss_pred             CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCE
Q 004203           89 EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI  164 (768)
Q Consensus        89 ~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~l  164 (768)
                      ....|+..++....   +......+.+++|++.+..|+.. ...+.|+.++++.+.....+.........+++.+.++.+
T Consensus        51 ~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  130 (349)
T 3v64_C           51 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  130 (349)
T ss_dssp             CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence            34456666665432   22233457899999866665544 467899999998776555444334456788998856666


Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecCCCCeEE
Q 004203          165 IASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSLRA  240 (768)
Q Consensus       165 LaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h~~~V~s  240 (768)
                      +++-...+.|.+.++........+. .-.....++++|++..|+....   ++|..++++......   .....-...+.
T Consensus       131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~PnG  207 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWPNG  207 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---SCCSSCSCEEE
T ss_pred             EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCcce
Confidence            6666667899999987654333332 2346789999998877776663   448888876543211   11223456799


Q ss_pred             EEEccCCCeEEEEE
Q 004203          241 VHFHPHAAPLLLTA  254 (768)
Q Consensus       241 VaFSPDG~~LlaS~  254 (768)
                      |+|+|++..|..+-
T Consensus       208 la~d~~~~~lY~aD  221 (349)
T 3v64_C          208 LTIDYAGRRMYWVD  221 (349)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEeCCCCEEEEEE
Confidence            99999887776653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.30  E-value=0.0025  Score=65.64  Aligned_cols=161  Identities=14%  Similarity=-0.008  Sum_probs=104.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      +.+..++.+..++.|..+|.. ++    +......+.++.+.++|.+++ ++  +.|..|| .+++....+......+.+
T Consensus       145 ~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~  219 (330)
T 3hxj_A          145 SEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTR  219 (330)
T ss_dssp             CTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSC
T ss_pred             cCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceec
Confidence            335567778888889999987 42    223345567777877877554 44  8899999 788877777666666888


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeec
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~-~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      +...+ ++. +..++.++.|..+|. +++.+..+... ..+..+.+.+++.+.+...+++|..+|. +++...   ....
T Consensus       220 ~~~~~-~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~---~~~~  292 (330)
T 3hxj_A          220 PAISE-DGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKW---NFET  292 (330)
T ss_dssp             CEECT-TSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEE---EEEC
T ss_pred             eEECC-CCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEE---EEEc
Confidence            88877 555 455667788888884 55555554432 3344566666776544433557999985 443322   2222


Q ss_pred             CCCCeEEEEEccCCCeEE
Q 004203          234 TRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~Ll  251 (768)
                      ....+.++...++|+.++
T Consensus       293 ~~~~~~~~~~d~~g~l~~  310 (330)
T 3hxj_A          293 GSWIIATPVIDENGTIYF  310 (330)
T ss_dssp             SSCCCSCCEECTTCCEEE
T ss_pred             CCccccceEEcCCCEEEE
Confidence            345567777878887444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.28  E-value=0.0054  Score=64.11  Aligned_cols=139  Identities=8%  Similarity=0.074  Sum_probs=90.8

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC--------------------CCCcEEEEEccCCCCEEEEE
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--------------------RRTPWVVRFHPLNPTIIASG  168 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--------------------~g~V~sVafSP~dg~lLaSg  168 (768)
                      ...+++|+++|++++++..++.|..||.++++.. .+...                    ...+..+++.+++++ |+.+
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            3467889999998888989999999998876543 23210                    134778999873444 4555


Q ss_pred             eCCCeEEEEECCCCcEEEEec-----CCCCeEEEEEcC-CCCEEEEEEC------------------CeEEEEEcCCCcc
Q 004203          169 SLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHA-SGELLAVASG------------------HKLYIWRYNMREE  224 (768)
Q Consensus       169 S~DgtVrLWDl~sg~~i~~l~-----h~~~V~svafSP-DG~~LatgSd------------------d~I~IWDl~t~~~  224 (768)
                      ...+.|..+|..+++......     .......+++++ +|.+.++-..                  +.|..||..+++.
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            555568899987654322211     113568899999 9986665432                  3488888766643


Q ss_pred             ccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ..    +.........|+|+|+|+.+.++
T Consensus       178 ~~----~~~~~~~p~gia~~~dg~~lyv~  202 (322)
T 2fp8_A          178 TL----LLKELHVPGGAEVSADSSFVLVA  202 (322)
T ss_dssp             EE----EEEEESCCCEEEECTTSSEEEEE
T ss_pred             EE----eccCCccCcceEECCCCCEEEEE
Confidence            21    22222445789999999866555

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.27  E-value=0.028  Score=66.53  Aligned_cols=177  Identities=8%  Similarity=-0.002  Sum_probs=121.4

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCCCC------------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYCPLS------------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS  140 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~------------gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~  140 (768)
                      +.....+....|+.+..++-|..|+..+.++.            -....|.++...++|+.|..|+.++-|.+||.++++
T Consensus       359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             eEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence            44445566778889998888999998765321            123579999999888867778887789999998877


Q ss_pred             EEEEEe----cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-------CCCCeEEEEEcCCCCEEEEE
Q 004203          141 CLKVLH----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------FYRPIASIAFHASGELLAVA  209 (768)
Q Consensus       141 ~l~~l~----gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-------h~~~V~svafSPDG~~Latg  209 (768)
                      ......    .....|.++...+ ++.+.+.. .+ -|.+||..+++......       ....|.++..+++|.+.+..
T Consensus       439 ~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  515 (795)
T 4a2l_A          439 VENFNQRNSQLVNENVYAILPDG-EGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG  515 (795)
T ss_dssp             EEEECTTTSCCSCSCEEEEEECS-SSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred             EEEeecCCCCcCCCeeEEEEECC-CCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe
Confidence            543321    1245688888877 67655544 44 58999998876544321       13578999999999866655


Q ss_pred             ECCeEEEEEcCCCccccCC---eEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          210 SGHKLYIWRYNMREETSSP---RIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       210 Sdd~I~IWDl~t~~~~~~~---~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      . ++|.+||..+... ...   ....-....|.++...++|...+.+.
T Consensus       516 ~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~  561 (795)
T 4a2l_A          516 E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR  561 (795)
T ss_dssp             S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES
T ss_pred             C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC
Confidence            4 7799999877643 100   00011245799999999999666553

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.15  E-value=0.0031  Score=74.26  Aligned_cols=81  Identities=14%  Similarity=0.045  Sum_probs=60.8

Q ss_pred             CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CeEEEEEcCCCC-
Q 004203          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR--PIASIAFHASGE-  204 (768)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~--~V~svafSPDG~-  204 (768)
                      ++.|+.||+.||+.+..++.+.. +....+.. .+.+++.++.|+.|+.||.++|+.+..+....  ...-+.|..+|+ 
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence            37899999999999988875543 33335566 67889999999999999999999998875433  234477788887 


Q ss_pred             EEEEEE
Q 004203          205 LLAVAS  210 (768)
Q Consensus       205 ~LatgS  210 (768)
                      ++++.+
T Consensus       532 yv~~~~  537 (689)
T 1yiq_A          532 YVTFMA  537 (689)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            444444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.15  E-value=0.00084  Score=73.48  Aligned_cols=89  Identities=13%  Similarity=-0.081  Sum_probs=71.9

Q ss_pred             eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----------CCCeEEEEECCCCcEEEEecCC--------
Q 004203          130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------LDHEVRLWNASTAECIGSRDFY--------  191 (768)
Q Consensus       130 tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS----------~DgtVrLWDl~sg~~i~~l~h~--------  191 (768)
                      +|.++|..+++.+..+.....+  .+.++| |+++++.+.          .+++|.+||+.+++.+.++...        
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            8999999999999998755555  799999 777777665          4789999999999999887533        


Q ss_pred             CCeEEEEEcCCCCEEEEEEC---CeEEE--EEcCC
Q 004203          192 RPIASIAFHASGELLAVASG---HKLYI--WRYNM  221 (768)
Q Consensus       192 ~~V~svafSPDG~~LatgSd---d~I~I--WDl~t  221 (768)
                      .....++|+|||++|+++..   +.+.+  +|..+
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            23567999999999998873   34888  88866

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.15  E-value=0.0072  Score=70.85  Aligned_cols=160  Identities=12%  Similarity=0.153  Sum_probs=99.5

Q ss_pred             eEEEEeCCCCCC------CCCC-------CCeEEEEECCCCC---EEEEEeCCCeEEEEeCCCCeEEEEEecCC------
Q 004203           92 SLHHLRPKYCPL------SPPP-------RSTIAAAFSPDGK---TLASTHGDHTVKIIDCQTGSCLKVLHGHR------  149 (768)
Q Consensus        92 sIrlWd~~t~~L------~gH~-------~~VtslafSPDG~---~LaSgS~DgtVrVWDl~tg~~l~~l~gH~------  149 (768)
                      .|..+|.+++++      ..|.       .......+..||+   .++.++.+|.++++|.++|+.+..++...      
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  350 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence            377788777632      2232       2333333344675   68899999999999999999874443211      


Q ss_pred             -----CC-------------------------cEEEEEccCCCCEEEEE-------------------------------
Q 004203          150 -----RT-------------------------PWVVRFHPLNPTIIASG-------------------------------  168 (768)
Q Consensus       150 -----g~-------------------------V~sVafSP~dg~lLaSg-------------------------------  168 (768)
                           +.                         -..++++| +..+++..                               
T Consensus       351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  429 (668)
T 1kv9_A          351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (668)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             cccccCCccccccccccCCeeEECCCCccccCCCcceECC-CCCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence                 00                         01257788 44444331                               


Q ss_pred             -----eCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecCC-CCeEEE
Q 004203          169 -----SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTR-RSLRAV  241 (768)
Q Consensus       169 -----S~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h~-~~V~sV  241 (768)
                           ..++.|+.||+.+++.+.............+...+.++++++. +.++.||.++++...   ...... -.-.-+
T Consensus       430 ~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~---~~~~~~~~~~~p~  506 (668)
T 1kv9_A          430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW---QFEAQSGIVAAPM  506 (668)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE---EEECSSCCCSCCE
T ss_pred             CCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe---EecCCCCcccCce
Confidence                 1247899999999999887765555544455667888888874 559999999987644   121111 111234


Q ss_pred             EEccCCCeEEEEEe
Q 004203          242 HFHPHAAPLLLTAE  255 (768)
Q Consensus       242 aFSPDG~~LlaS~s  255 (768)
                      .+..+|+..++.+.
T Consensus       507 ~~~~~G~~yva~~~  520 (668)
T 1kv9_A          507 TFELAGRQYVAIMA  520 (668)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEEECCEEEEEEEe
Confidence            55668886665554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.10  E-value=0.068  Score=63.21  Aligned_cols=179  Identities=9%  Similarity=0.006  Sum_probs=122.2

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCC----------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE
Q 004203           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLS----------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (768)
Q Consensus        72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~----------gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~  141 (768)
                      .+.....|....|+.+..++-|..++.....+.          -....|.++...++|++. .|+.++-|.+||..+++.
T Consensus       311 ~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~  389 (795)
T 4a2l_A          311 SVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRF  389 (795)
T ss_dssp             CEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCE
T ss_pred             cEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcE
Confidence            344445667788888998888888987654321          123469999999888654 577777799999887765


Q ss_pred             EEEEec--------CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----CCCCeEEEEEcCCCCEEEE
Q 004203          142 LKVLHG--------HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHASGELLAV  208 (768)
Q Consensus       142 l~~l~g--------H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-----h~~~V~svafSPDG~~Lat  208 (768)
                      ......        ....|.++...+ ++++|..|+.++-|.+||..+++......     ....|.++...++|.+.+.
T Consensus       390 ~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig  468 (795)
T 4a2l_A          390 TSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG  468 (795)
T ss_dssp             EEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE
T ss_pred             EEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE
Confidence            433211        135688888877 77746667777789999999877554322     2457899999998886655


Q ss_pred             EECCeEEEEEcCCCccccCCeE---eecCCCCeEEEEEccCCCeEEEE
Q 004203          209 ASGHKLYIWRYNMREETSSPRI---VLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       209 gSdd~I~IWDl~t~~~~~~~~~---l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      . .+++.+||..+++.......   ..-....|.++...++|+..+.+
T Consensus       469 t-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  515 (795)
T 4a2l_A          469 T-LSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG  515 (795)
T ss_dssp             E-SSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred             e-cCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe
Confidence            4 47799999877654221000   00123679999999999866554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.08  E-value=0.19  Score=60.32  Aligned_cols=165  Identities=10%  Similarity=0.008  Sum_probs=108.2

Q ss_pred             EEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCC----eEEEEEecCCCCcEEEEE
Q 004203           86 SWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRF  157 (768)
Q Consensus        86 Sgs~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~La-SgS~DgtVrVWDl~tg----~~l~~l~gH~g~V~sVaf  157 (768)
                      -......|+..++....   +......+.+++|++....|+ +-...+.|+.+++...    .....+.........|++
T Consensus       399 l~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv  478 (791)
T 3m0c_C          399 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  478 (791)
T ss_dssp             EEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             ccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence            34455667777776442   334456788999999555555 5455788999998753    334444434556778999


Q ss_pred             ccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeec
Q 004203          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      .+.+++++++-...+.|.+.++........+. .-.....|+++|.+.+|+.+..   ++|.+.+++......   .+..
T Consensus       479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~---lv~~  555 (791)
T 3m0c_C          479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTE  555 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EECS
T ss_pred             eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE---EEeC
Confidence            98455666666677899999998654433332 3346789999998877777663   348888886554311   2223


Q ss_pred             CCCCeEEEEEccCCCeEEEE
Q 004203          234 TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .-...+.|++++.+..|..+
T Consensus       556 ~l~~P~GLavD~~~~~LYwa  575 (791)
T 3m0c_C          556 NIQWPNGITLDLLSGRLYWV  575 (791)
T ss_dssp             SCSCEEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEecCCCeEEEE
Confidence            34678999999888767665

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.01  E-value=0.078  Score=56.17  Aligned_cols=187  Identities=9%  Similarity=-0.012  Sum_probs=113.2

Q ss_pred             EEEECCCCCEEEEEeCC--------------CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----CCCe
Q 004203          112 AAAFSPDGKTLASTHGD--------------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----LDHE  173 (768)
Q Consensus       112 slafSPDG~~LaSgS~D--------------gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS----~Dgt  173 (768)
                      +--++++|++|+.+...              +.|+..+++.++.......   .  ...|++ +++.|+...    .+..
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~--~~~~s~-~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---P--CIYASL-IGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---C--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---C--ccEEEE-eCCEEEEEeecCCCCce
Confidence            34567899999887653              5788899887764443322   1  236788 777777765    3446


Q ss_pred             EEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203          174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       174 VrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Ll  251 (768)
                      |+..++......+...+..    .+|+++++.|+..+++.  |++.++......    .+..  .... ..++|++.+|+
T Consensus       131 Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~----~l~~--~~~~-~~~~P~g~~iy  199 (302)
T 3s25_A          131 LYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA----LFYD--CNCY-KPVVLDDTNVY  199 (302)
T ss_dssp             EEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE----EEEC--SCEE-EEEEEETTEEE
T ss_pred             EEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE----EEeC--CCcc-ceeeecCCEEE
Confidence            7777777555444444432    45788999999887643  888888766532    2222  2222 34679999888


Q ss_pred             EEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcce
Q 004203          252 LTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATR  331 (768)
Q Consensus       252 aS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~  331 (768)
                      .+.....                     ..|...+........|...        ..+.|++++++|++..+.  -+..+
T Consensus       200 ~t~~~~~---------------------~~I~~~~ldG~~~~~Lt~~--------~~~~~~~~g~~Iy~~~~~--~~~~i  248 (302)
T 3s25_A          200 YMDVNRD---------------------NAIVHVNINNPNPVVLTEA--------NIEHYNVYGSLIFYQRGG--DNPAL  248 (302)
T ss_dssp             EEEGGGT---------------------TEEEEECSSSCCCEECSCS--------CEEEEEEETTEEEEEECS--SSCEE
T ss_pred             EEEcCCC---------------------cEEEEEECCCCCeEEEeCC--------CcceEEECCCEEEEEECC--CCcEE
Confidence            7643110                     0222222222222222111        126699999999764222  24788


Q ss_pred             EEeccCCCceeeeec
Q 004203          332 TQQSLRSSSSVRLLT  346 (768)
Q Consensus       332 ~~~~~~ss~~~rl~~  346 (768)
                      ....++++.+++|+.
T Consensus       249 ~~~~~DG~~r~~l~~  263 (302)
T 3s25_A          249 CVVKNDGTGFKELAK  263 (302)
T ss_dssp             EEEETTSCCCEEEEE
T ss_pred             EEEECCCCccEEeeC
Confidence            888999988887765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.00  E-value=0.0076  Score=63.99  Aligned_cols=139  Identities=6%  Similarity=-0.057  Sum_probs=89.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC------CC-------CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLS------PP-------PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~------gH-------~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (768)
                      +..++....++.|..+|.+++++.      ..       ...+.+ ....++..++.++.++.|+.+|.++|+.+..+..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            456666677778888887766321      10       122322 1222467888899999999999999998877765


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCe------EEEEEcCCCCEEEEEE-CCeEEEEEcC
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI------ASIAFHASGELLAVAS-GHKLYIWRYN  220 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V------~svafSPDG~~LatgS-dd~I~IWDl~  220 (768)
                      ...........   +..++.++.++.|+.+|.++|+.+........+      ......  +..+++++ ++.+..+|..
T Consensus       132 ~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          132 AGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME  206 (376)
T ss_dssp             SSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred             CCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence            43322222332   356777888999999999999988776543332      112222  34566666 4569999998


Q ss_pred             CCccc
Q 004203          221 MREET  225 (768)
Q Consensus       221 t~~~~  225 (768)
                      +++..
T Consensus       207 tG~~~  211 (376)
T 3q7m_A          207 QGQMI  211 (376)
T ss_dssp             TCCEE
T ss_pred             CCcEE
Confidence            87653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.98  E-value=0.0038  Score=66.37  Aligned_cols=132  Identities=11%  Similarity=0.045  Sum_probs=87.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC-CCCcEEEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWVVRF  157 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~--gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-~g~V~sVaf  157 (768)
                      +..++.+..++.+..+|..++++.  ........+..  ++..|+.++.++.|..+|.++|+.+...... ...+.....
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  316 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL  316 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE
Confidence            456677778888999998876422  11223444444  4678888999999999999999988776522 222323333


Q ss_pred             ccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCeEEEEEcCCCCEEEEEE-CCeEEEEE
Q 004203          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVAS-GHKLYIWR  218 (768)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h-~~~V~svafSPDG~~LatgS-dd~I~IWD  218 (768)
                         .+..++.++.++.|+++|.++|+.+..... ...+....... +..|++++ ++.|+.||
T Consensus       317 ---~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~-~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          317 ---YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA-DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ---ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred             ---ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence               246788888999999999999998877654 23332211112 44566666 45688886

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.96  E-value=0.1  Score=55.92  Aligned_cols=160  Identities=11%  Similarity=0.011  Sum_probs=101.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L----~gH~~~VtslafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      +...++-...+.|..++......    ........++++.+.+..| ++-...+.|.+.+++.......+.........+
T Consensus        85 ~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~i  164 (349)
T 3v64_C           85 ELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI  164 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEE
T ss_pred             cEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceE
Confidence            33334445667888888765421    1223456789999855555 455567899999987655444444444568899


Q ss_pred             EEccCCCCEEEEEeCC-CeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEe
Q 004203          156 RFHPLNPTIIASGSLD-HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIV  231 (768)
Q Consensus       156 afSP~dg~lLaSgS~D-gtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~l  231 (768)
                      +++|.++.++.+-..+ +.|..+++.......... .-...+.++|+|++..|+.+..  +.|..+|++.....   ..+
T Consensus       165 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~---~~~  241 (349)
T 3v64_C          165 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AVI  241 (349)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEE
T ss_pred             EEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE---EEE
Confidence            9999555555555555 789999887543332222 2335688999999888888773  44999998754321   122


Q ss_pred             ecCCCCeEEEEE
Q 004203          232 LRTRRSLRAVHF  243 (768)
Q Consensus       232 ~~h~~~V~sVaF  243 (768)
                      .........+++
T Consensus       242 ~~~~~~P~giav  253 (349)
T 3v64_C          242 SQGLPHPFAITV  253 (349)
T ss_dssp             CSSCSSEEEEEE
T ss_pred             eCCCCCceEEEE
Confidence            233456678888

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.91  E-value=0.012  Score=65.25  Aligned_cols=141  Identities=11%  Similarity=0.130  Sum_probs=88.4

Q ss_pred             CeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC-CC----eEEEEECCCC
Q 004203          109 STIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DH----EVRLWNASTA  182 (768)
Q Consensus       109 ~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~-Dg----tVrLWDl~sg  182 (768)
                      ....++|+| ++..|+.+...+.|+++|+++++...... .......++|++ +++.|+.+.. ++    .+..++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            457899998 46677777666899999998877554443 455688999999 7875555443 22    3444443 33


Q ss_pred             cEE--EEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          183 ECI--GSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       183 ~~i--~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ...  ..+........++++|++..|+++.  .++|+.+|........  ..........+.++|+|+|++|.++.
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            222  2232233456788999443444444  4569999987664311  11122234678999999999666553

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.87  E-value=0.014  Score=67.25  Aligned_cols=137  Identities=10%  Similarity=0.048  Sum_probs=88.1

Q ss_pred             CCCCC---EEEEEeCCCeEEEEeCCCCeEEEEEecCC-------------CCc--------------------------E
Q 004203          116 SPDGK---TLASTHGDHTVKIIDCQTGSCLKVLHGHR-------------RTP--------------------------W  153 (768)
Q Consensus       116 SPDG~---~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-------------g~V--------------------------~  153 (768)
                      ..||+   .++.++.+|.++++|.++|+.+..++-..             .++                          .
T Consensus       310 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~  389 (571)
T 2ad6_A          310 PVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQG  389 (571)
T ss_dssp             EETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSC
T ss_pred             ccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCC
Confidence            34784   67788899999999999999887664221             111                          2


Q ss_pred             EEEEccCCCCEEEEEe-------------------------------------CCCeEEEEECCCCcEEEEecCCCCeEE
Q 004203          154 VVRFHPLNPTIIASGS-------------------------------------LDHEVRLWNASTAECIGSRDFYRPIAS  196 (768)
Q Consensus       154 sVafSP~dg~lLaSgS-------------------------------------~DgtVrLWDl~sg~~i~~l~h~~~V~s  196 (768)
                      .++++| +..+++...                                     .++.|..||+.+++.+..+.....+..
T Consensus       390 ~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~  468 (571)
T 2ad6_A          390 VDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG  468 (571)
T ss_dssp             BCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS
T ss_pred             CceECC-CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc
Confidence            357788 555555432                                     357899999999998887765544443


Q ss_pred             EEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          197 IAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       197 vafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..+...+..+++++ ++.|+.||.++++...  .........-..+.+..+|+.++....
T Consensus       469 ~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw--~~~~~~~~~~~p~~~~~~G~~yv~~~~  526 (571)
T 2ad6_A          469 GTLYTKGGLVWYATLDGYLKALDNKDGKELW--NFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             BCEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eeEEECCCEEEEEcCCCeEEEEECCCCCEEE--EEeCCCCcEeeeEEEEECCEEEEEEEC
Confidence            33344566677776 4569999999988754  111122111223446688886665544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.83  E-value=0.079  Score=55.01  Aligned_cols=151  Identities=9%  Similarity=0.107  Sum_probs=99.7

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEE-EeCCCeEEEEeCCCCeEEEEEecC-CCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGH-RRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~gH-~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (768)
                      .+.+-...+.+++|+|+++.|++ ...++.|...|.. ++.++.+.-. ......|++.+ ++.++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence            45566678999999998766654 6668899999998 8888777422 24577889988 7777777667889999988


Q ss_pred             CCCcE---EEEe--c-----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEee--------cCCCCeEE
Q 004203          180 STAEC---IGSR--D-----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL--------RTRRSLRA  240 (768)
Q Consensus       180 ~sg~~---i~~l--~-----h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~--------~h~~~V~s  240 (768)
                      .....   +...  .     .+.....++|+|+++.|+++.... ..+|.++...... ...+.        .....+.+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~-~l~i~~~~~~~~~~~~~d~S~  177 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN-ELHISKDKALQRQFTLDDVSG  177 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS-CCEEEECHHHHHTCCSSCCCE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC-ceeeecchhhccccccCCcee
Confidence            75442   1222  1     234568999999998888877543 4444443110000 01111        12346799


Q ss_pred             EEEccCCCeEEEEEe
Q 004203          241 VHFHPHAAPLLLTAE  255 (768)
Q Consensus       241 VaFSPDG~~LlaS~s  255 (768)
                      ++|+|....+++.+.
T Consensus       178 l~~dp~tg~lliLS~  192 (255)
T 3qqz_A          178 AEFNQQKNTLLVLSH  192 (255)
T ss_dssp             EEEETTTTEEEEEET
T ss_pred             EEEcCCCCeEEEEEC
Confidence            999998766665553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.82  E-value=0.079  Score=57.57  Aligned_cols=160  Identities=11%  Similarity=0.014  Sum_probs=100.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      +...++-...+.|..++.....    +.........+++++.+..|+ +-...+.|.+.+++.......+.........+
T Consensus       128 ~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gi  207 (386)
T 3v65_B          128 ELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI  207 (386)
T ss_dssp             TEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEE
T ss_pred             CeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEE
Confidence            3334444566778888876542    112223456788988555554 55557899999987655444454444668899


Q ss_pred             EEccCCCCEEEEEeCC-CeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEe
Q 004203          156 RFHPLNPTIIASGSLD-HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIV  231 (768)
Q Consensus       156 afSP~dg~lLaSgS~D-gtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~l  231 (768)
                      +++|.++.++.+-..+ +.|..+++.......... .-...+.++|+|++..|+.+..  +.|..+|++.....   ..+
T Consensus       208 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~~  284 (386)
T 3v65_B          208 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AVI  284 (386)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE---EEE
T ss_pred             EEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE---EEE
Confidence            9999455555554444 689989887544333332 2335688999999888888773  44999998654321   122


Q ss_pred             ecCCCCeEEEEE
Q 004203          232 LRTRRSLRAVHF  243 (768)
Q Consensus       232 ~~h~~~V~sVaF  243 (768)
                      .........|++
T Consensus       285 ~~~~~~P~giav  296 (386)
T 3v65_B          285 SQGLPHPFAITV  296 (386)
T ss_dssp             CSSCSSEEEEEE
T ss_pred             ECCCCCceEEEE
Confidence            233456678888

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.82  E-value=0.034  Score=64.20  Aligned_cols=162  Identities=9%  Similarity=0.056  Sum_probs=97.3

Q ss_pred             CeEEEEeCCCCC------CCCCC--------CCeEEEEEC-CCCC---EEEEEeCCCeEEEEeCCCCeEEEEEecCC---
Q 004203           91 ESLHHLRPKYCP------LSPPP--------RSTIAAAFS-PDGK---TLASTHGDHTVKIIDCQTGSCLKVLHGHR---  149 (768)
Q Consensus        91 gsIrlWd~~t~~------L~gH~--------~~VtslafS-PDG~---~LaSgS~DgtVrVWDl~tg~~l~~l~gH~---  149 (768)
                      +.|.-+|..+++      +..|.        ..+. +... .+|+   .++.++.+|.++++|.++|+.+..+....   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            467777777663      22232        2222 2332 4774   78889999999999999999887665331   


Q ss_pred             ---------CC---------------------------------cEEEEEccCCCCEEEEEe------------------
Q 004203          150 ---------RT---------------------------------PWVVRFHPLNPTIIASGS------------------  169 (768)
Q Consensus       150 ---------g~---------------------------------V~sVafSP~dg~lLaSgS------------------  169 (768)
                               +.                                 -..++++|+.+.+++...                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                     00                                 012466773333333221                  


Q ss_pred             --------------CCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecC
Q 004203          170 --------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRT  234 (768)
Q Consensus       170 --------------~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h  234 (768)
                                    .++.|+.||+.+++.+.......++..-.....+.++++++ ++.++.||.++++....  .....
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~--~~~~~  527 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK--FQTGS  527 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSS
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE--ecCCC
Confidence                          25789999999999887765443332222223466777777 45699999999987541  11111


Q ss_pred             CCCeEEEEEccCCCeEEEEEe
Q 004203          235 RRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       235 ~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...-.-+.|..+|+.+++...
T Consensus       528 g~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          528 GIVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             CCCSCCEEEEETTEEEEEEEE
T ss_pred             CcccCceEEEECCEEEEEEEc
Confidence            111223667789986665543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.82  E-value=0.056  Score=60.00  Aligned_cols=139  Identities=14%  Similarity=0.131  Sum_probs=86.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCC----C-eEEEEeCCCCeE-EEEEecCCCC
Q 004203           81 RRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD----H-TVKIIDCQTGSC-LKVLHGHRRT  151 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~D----g-tVrVWDl~tg~~-l~~l~gH~g~  151 (768)
                      ...|+.....+.|+.++...++   +........+++|+++|+ |+.+...    . .+..++...+.. ...+. ....
T Consensus       152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~  229 (433)
T 4hw6_A          152 YDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARG  229 (433)
T ss_dssp             TCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSS
T ss_pred             CCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCC
Confidence            3455544444788889886653   334455689999999999 5554432    1 244444332211 11222 2334


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ec--CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCC
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD--FYRPIASIAFHASGELLAVASG--HKLYIWRYNM  221 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~--h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t  221 (768)
                      ...++++|.++.++++-..++.|+.+|..+++.... +.  ....-..++|+|+|++|+++..  +.|+.+|++.
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            566889986677666666778999999987776322 22  2222346999999997777763  4599988763

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.77  E-value=0.061  Score=63.46  Aligned_cols=173  Identities=12%  Similarity=0.019  Sum_probs=116.2

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~-------gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (768)
                      +.....+....|+.+..++-|..++..+.++.       .....|.++...++|.+.+ |+.++-|.+||.++++.....
T Consensus       365 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~  443 (781)
T 3v9f_A          365 VSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIE  443 (781)
T ss_dssp             EEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECC
T ss_pred             eEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEec
Confidence            33444566677888887777888887654221       2345799999988876554 677677999998887643322


Q ss_pred             e--cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC------CCCeEEEEEcCCCCEEEEEECCeEEEE
Q 004203          146 H--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF------YRPIASIAFHASGELLAVASGHKLYIW  217 (768)
Q Consensus       146 ~--gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h------~~~V~svafSPDG~~LatgSdd~I~IW  217 (768)
                      .  -....|.++...+ ++.+.+ |+. +-|..||..+++.......      ...|.++...++|.+.+...++++..|
T Consensus       444 ~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~  520 (781)
T 3v9f_A          444 LEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIY  520 (781)
T ss_dssp             STTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEE
T ss_pred             cCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEE
Confidence            1  1345688888777 565444 444 5699999988765443221      357899999999987665545779999


Q ss_pred             EcCCCccccCCeEee-c---CCCCeEEEEEccCCCeEEEE
Q 004203          218 RYNMREETSSPRIVL-R---TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       218 Dl~t~~~~~~~~~l~-~---h~~~V~sVaFSPDG~~LlaS  253 (768)
                      |..+.+...    .. .   ....|.++...++|...+.+
T Consensus       521 ~~~~~~~~~----~~~~~~l~~~~i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          521 TPDMQLVRK----FNQYEGFCSNTINQIYRSSKGQMWLAT  556 (781)
T ss_dssp             CTTCCEEEE----ECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred             eCCCCeEEE----ccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence            887654321    11 1   24578999999999966654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.74  E-value=0.034  Score=61.58  Aligned_cols=139  Identities=13%  Similarity=0.040  Sum_probs=91.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCeEE--EEEecCCC
Q 004203           81 RRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCL--KVLHGHRR  150 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l--~~l~gH~g  150 (768)
                      +..|+.....+.|+.+|.....   +.........++|+++|++|+.+...     ..+.+++.+ +...  ..+.. ..
T Consensus       149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~  226 (430)
T 3tc9_A          149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQ  226 (430)
T ss_dssp             EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CS
T ss_pred             CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CC
Confidence            3445555444788888887652   23345568899999999977766541     234445533 3221  23322 23


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCC
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVAS--GHKLYIWRYNM  221 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t  221 (768)
                      ....++++|+++.++++-..++.|+.+|...+.......  .......++|+|+|++|++..  .+.|++++++.
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            456789999667777776677899999998776533322  223467899999999777776  34599988764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.73  E-value=0.29  Score=51.38  Aligned_cols=163  Identities=10%  Similarity=-0.009  Sum_probs=98.5

Q ss_pred             EEEEeCCCeEEEEeCCC----CC----CCCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           84 LASWVEAESLHHLRPKY----CP----LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        84 LvSgs~DgsIrlWd~~t----~~----L~gH~~~VtslafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      .++-...+.|..++...    ..    +...-....++++++.+..|+ +-...+.|.++|++.......+.........
T Consensus        45 y~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~  124 (316)
T 1ijq_A           45 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRA  124 (316)
T ss_dssp             EEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEE
T ss_pred             EEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcce
Confidence            33444556777777654    11    112224567899987555555 4466889999998765544444444456889


Q ss_pred             EEEccCCCCEEEEEeCC-CeEEEEECCCCcEEEEe--cCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCe
Q 004203          155 VRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPR  229 (768)
Q Consensus       155 VafSP~dg~lLaSgS~D-gtVrLWDl~sg~~i~~l--~h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~  229 (768)
                      ++++|.++.++.+.... +.|...++... ....+  ..-...+.++|++++..|+.+..  +.|..+|++....    .
T Consensus       125 iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~----~  199 (316)
T 1ijq_A          125 IVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----K  199 (316)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----E
T ss_pred             EEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce----E
Confidence            99999455444444333 68888888643 33332  22345779999999988888774  4599999875332    1


Q ss_pred             Eeec---CCCCeEEEEEccCCCeEEEE
Q 004203          230 IVLR---TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       230 ~l~~---h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .+..   .......+++.  +..+..+
T Consensus       200 ~~~~~~~~~~~P~giav~--~~~ly~~  224 (316)
T 1ijq_A          200 TILEDEKRLAHPFSLAVF--EDKVFWT  224 (316)
T ss_dssp             EEEECTTTTSSEEEEEEE--TTEEEEE
T ss_pred             EEeecCCccCCcEEEEEE--CCEEEEE
Confidence            2221   23456778874  3345444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.73  E-value=0.059  Score=57.20  Aligned_cols=163  Identities=10%  Similarity=-0.032  Sum_probs=103.8

Q ss_pred             CCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCeE-EEEEecCCCCcEEEEEccCC
Q 004203           89 EAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLN  161 (768)
Q Consensus        89 ~DgsIrlWd~~t~~L-----~gH~~~VtslafSPDG~~La-SgS~DgtVrVWDl~tg~~-l~~l~gH~g~V~sVafSP~d  161 (768)
                      ....|+.+++.....     ......+.+++|++.+..|+ +-...+.|+.++++.+.. ...+...-.....+++.+.+
T Consensus        11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            345677777765420     11123467899998555554 545678999999887642 22333233456778998756


Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecCCCC
Q 004203          162 PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRS  237 (768)
Q Consensus       162 g~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h~~~  237 (768)
                      +.++++-...+.|.++++......... ........++++|.+..|+.+..   ++|...+++.....   ......-..
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~~~~~~l~~  167 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF---IIINSEIYW  167 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE---EEECSSCSC
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE---EEEECCCCC
Confidence            666666667789999998764433333 33456789999998777777662   34888887654321   122233456


Q ss_pred             eEEEEEccCCCeEEEEE
Q 004203          238 LRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       238 V~sVaFSPDG~~LlaS~  254 (768)
                      .+.|+|+|++..|..+-
T Consensus       168 Pnglavd~~~~~lY~aD  184 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWAD  184 (318)
T ss_dssp             EEEEEEETTTTEEEEEE
T ss_pred             ccEEEEeccCCEEEEEE
Confidence            79999999887776653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.61  E-value=0.068  Score=62.07  Aligned_cols=136  Identities=11%  Similarity=0.063  Sum_probs=85.5

Q ss_pred             CCC---CEEEEEeCCCeEEEEeCCCCeEEEEEecCC------------C-Cc--------------------------EE
Q 004203          117 PDG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHR------------R-TP--------------------------WV  154 (768)
Q Consensus       117 PDG---~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~------------g-~V--------------------------~s  154 (768)
                      .+|   +.++.++.+|.++++|.++|+.+.......            + ++                          ..
T Consensus       318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  397 (599)
T 1w6s_A          318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGH  397 (599)
T ss_dssp             TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCC
Confidence            578   567888999999999999999887654211            1 11                          13


Q ss_pred             EEEccCCCCEEEEE---------------------------------e------CCCeEEEEECCCCcEEEEecCCCCeE
Q 004203          155 VRFHPLNPTIIASG---------------------------------S------LDHEVRLWNASTAECIGSRDFYRPIA  195 (768)
Q Consensus       155 VafSP~dg~lLaSg---------------------------------S------~DgtVrLWDl~sg~~i~~l~h~~~V~  195 (768)
                      ++++| +..+++..                                 +      .++.|.-||+.+++.+....+..+..
T Consensus       398 ~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~  476 (599)
T 1w6s_A          398 DSYDP-KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVW  476 (599)
T ss_dssp             CEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCC
T ss_pred             ccCCC-CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCcc
Confidence            56777 44444332                                 1      34789999999999887765443322


Q ss_pred             EEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          196 SIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       196 svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .-.....+.++++++ ++.++.||.++++....  ..........-+.|..+|+.+++...
T Consensus       477 ~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~--~~l~~g~~~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          477 GGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK--FKIPSGAIGYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             SBCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CcceEecCCEEEEECCCCeEEEEECCCCCEEEE--eeCCCCcEeccEEEEeCCEEEEEEEc
Confidence            212233566677777 45699999999987541  11222222233566788986665544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.45  E-value=0.13  Score=53.26  Aligned_cols=141  Identities=12%  Similarity=-0.008  Sum_probs=83.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE-EEEEec---------CCCCcEEEEEccCCCC-EEEEEeCCCeEEEEE
Q 004203          110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-LKVLHG---------HRRTPWVVRFHPLNPT-IIASGSLDHEVRLWN  178 (768)
Q Consensus       110 VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~-l~~l~g---------H~g~V~sVafSP~dg~-lLaSgS~DgtVrLWD  178 (768)
                      ...++..+++..+++-..++.|+++|..+++. +....+         .-...+.+  +| +++ ++++-...+.|+.+|
T Consensus       119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~~~~~I~~~~  195 (306)
T 2p4o_A          119 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNTEKMLLLRIP  195 (306)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEETTTTEEEEEE
T ss_pred             cCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeCCCCEEEEEE
Confidence            45666666555555555689999999876532 221111         11224445  78 555 445555677999999


Q ss_pred             CCC-CcE--EEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEc---cCCCeEE
Q 004203          179 AST-AEC--IGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFH---PHAAPLL  251 (768)
Q Consensus       179 l~s-g~~--i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFS---PDG~~Ll  251 (768)
                      +.. ++.  ...+........++++++|+++++.. .+.|.++|.. ++... ...+......+.+++|.   ||++.|+
T Consensus       196 ~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~-~~~~~~~~~~p~~~a~~g~~~d~~~Ly  273 (306)
T 2p4o_A          196 VDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI-IAQAEQGVIGSTAVAFGQTEGDCTAIY  273 (306)
T ss_dssp             BCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE-EECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             eCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE-EeecccccCCceEEEEecccCCCCEEE
Confidence            875 332  12222123456789999998655544 4569999865 32211 00111223678999999   8988777


Q ss_pred             EEEe
Q 004203          252 LTAE  255 (768)
Q Consensus       252 aS~s  255 (768)
                      ++..
T Consensus       274 Vt~~  277 (306)
T 2p4o_A          274 VVTN  277 (306)
T ss_dssp             EEEC
T ss_pred             EECC
Confidence            7665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.44  E-value=0.4  Score=55.88  Aligned_cols=162  Identities=7%  Similarity=-0.055  Sum_probs=109.7

Q ss_pred             CCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCC
Q 004203           89 EAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP  162 (768)
Q Consensus        89 ~DgsIrlWd~~t~~L-----~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg  162 (768)
                      ....|+..+++....     ...-..+.+++|++++..|+.+ ..++.|+.++++.......+......+..+++.+.++
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            566788888775421     1233568899999966666544 5578999999886655455543334577899987456


Q ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecCCCCe
Q 004203          163 TIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       163 ~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      +++.+-...+.|.+.|+......... ..-.....++++|....|+....   ++|...+++....    ..+...-...
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~----~~l~~~~~~P  168 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----TTLVPNVGRA  168 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSCSSE
T ss_pred             EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce----EEEECCCCCc
Confidence            66666666789999999765433322 33345689999997777776652   3488888766543    2233455678


Q ss_pred             EEEEEccCCCeEEEEE
Q 004203          239 RAVHFHPHAAPLLLTA  254 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~  254 (768)
                      ..|+++++++.|..+-
T Consensus       169 ~GlalD~~~~~LY~aD  184 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTD  184 (628)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             ceEEEccccCEEEEEE
Confidence            9999999887776653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.41  E-value=0.22  Score=58.73  Aligned_cols=174  Identities=4%  Similarity=-0.072  Sum_probs=115.5

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCCCC-------------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYCPLS-------------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG  139 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~-------------gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg  139 (768)
                      +.....|....|+.+..++-|..++.....+.             -....|.++...++|++ ..|+.++-|.+||..++
T Consensus       315 v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~  393 (781)
T 3v9f_A          315 ARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKR  393 (781)
T ss_dssp             EEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEE
T ss_pred             EEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCC
Confidence            44445566778888988888888887755321             12356999999888765 45666666899998765


Q ss_pred             eEEEEE---ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCeEEEEEcCCCCEEEEEECCe
Q 004203          140 SCLKVL---HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGHK  213 (768)
Q Consensus       140 ~~l~~l---~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---h~~~V~svafSPDG~~LatgSdd~  213 (768)
                      +.....   ......|.++...+ ++.+.+ |+.++-|..+|..+++......   ....|.++...++|.+.+ ++.++
T Consensus       394 ~~~~~~~~~~~~~~~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~G  470 (781)
T 3v9f_A          394 VAIYNKENRELLSNSVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTHAG  470 (781)
T ss_dssp             EEECC-----CCCSBEEEEEECT-TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EETTE
T ss_pred             eEEEccCCCCCCCcceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EECCc
Confidence            432211   12235688888776 566554 6666779999998876544321   245788998888887544 45578


Q ss_pred             EEEEEcCCCccccCCeEeecC-----CCCeEEEEEccCCCeEEEE
Q 004203          214 LYIWRYNMREETSSPRIVLRT-----RRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       214 I~IWDl~t~~~~~~~~~l~~h-----~~~V~sVaFSPDG~~LlaS  253 (768)
                      |.+||..+++...   .....     ...|.++...++|...+.+
T Consensus       471 l~~~~~~~~~~~~---~~~~~~~~~~~~~i~~i~~d~~g~lWigt  512 (781)
T 3v9f_A          471 VFVIDLASKKVIH---HYDTSNSQLLENFVRSIAQDSEGRFWIGT  512 (781)
T ss_dssp             EEEEESSSSSCCE---EECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred             eEEEeCCCCeEEe---cccCcccccccceeEEEEEcCCCCEEEEE
Confidence            9999987765322   11111     3679999999999866655

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.39  E-value=0.45  Score=51.89  Aligned_cols=166  Identities=8%  Similarity=-0.028  Sum_probs=101.7

Q ss_pred             EEEEeCCCeEEEEeCCCC-------C-CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           84 LASWVEAESLHHLRPKYC-------P-LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        84 LvSgs~DgsIrlWd~~t~-------~-L~gH~~~VtslafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      .++-...+.|..+++...       . +........++++.+.++.| ++-...+.|.+.|++.......+.........
T Consensus       127 ywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~  206 (400)
T 3p5b_L          127 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRA  206 (400)
T ss_dssp             EEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEE
T ss_pred             EEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcce
Confidence            334445677877777541       1 12234567899999854444 45556789999999876655555545556889


Q ss_pred             EEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeE
Q 004203          155 VRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       155 VafSP~dg~lLaSgS~-DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~  230 (768)
                      |++.|.++.++.+-.. .+.|...++.......... .-...+.+++++++..|+.+..  +.|..+|++......   .
T Consensus       207 iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~---~  283 (400)
T 3p5b_L          207 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT---I  283 (400)
T ss_dssp             EEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEE---E
T ss_pred             EEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEE---E
Confidence            9999944444444322 3689999987544333332 2246789999999998888873  459999987543211   1


Q ss_pred             eec--CCCCeEEEEEccCCCeEEEEE
Q 004203          231 VLR--TRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       231 l~~--h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ...  .......|++  ++..++.+.
T Consensus       284 ~~~~~~l~~P~gl~v--~~~~lywtd  307 (400)
T 3p5b_L          284 LEDEKRLAHPFSLAV--FEDKVFWTD  307 (400)
T ss_dssp             EECSSTTSSEEEEEE--ETTEEEEEE
T ss_pred             EeCCCCCCCCEEEEE--eCCEEEEec
Confidence            221  1234566776  334455443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.34  E-value=0.061  Score=61.16  Aligned_cols=144  Identities=10%  Similarity=0.060  Sum_probs=89.4

Q ss_pred             CeEEEEECC-CCCEEEEEeC-CCeEEEEeCCCCeEEEEEecCC---CCcEEEEE-------ccCCCCEEEEEeCCC----
Q 004203          109 STIAAAFSP-DGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHR---RTPWVVRF-------HPLNPTIIASGSLDH----  172 (768)
Q Consensus       109 ~VtslafSP-DG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~---g~V~sVaf-------SP~dg~lLaSgS~Dg----  172 (768)
                      ....|+|+| ++..|+.+.. .+.|++.|++++.....+....   .....++|       ++ +++.|+.+...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            467999999 4555555554 4789999999887665554322   24788999       99 777555555443    


Q ss_pred             ---eEEEEECCC-CcEE-----EEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcC-------CCccc-----c---
Q 004203          173 ---EVRLWNAST-AECI-----GSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYN-------MREET-----S---  226 (768)
Q Consensus       173 ---tVrLWDl~s-g~~i-----~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~-------t~~~~-----~---  226 (768)
                         .|.+++... ++..     ..+........++.+|++..|+++.  .+.|+.+|+.       ++...     .   
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               366776443 2221     2222222345678899777666666  3459999997       44430     0   


Q ss_pred             --CCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          227 --SPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       227 --~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                        ............+.|+|+|+|++|.++
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYva  327 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFG  327 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEE
Confidence              011112234557899999999965544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.32  E-value=0.069  Score=57.68  Aligned_cols=142  Identities=11%  Similarity=0.089  Sum_probs=93.5

Q ss_pred             eEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEecC-----CC--CcEEEEE---ccCCCCEEEEEe---------
Q 004203          110 TIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGH-----RR--TPWVVRF---HPLNPTIIASGS---------  169 (768)
Q Consensus       110 VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH-----~g--~V~sVaf---SP~dg~lLaSgS---------  169 (768)
                      -.+++|.+....|+.++ ..++|..||...+.........     ..  .+..+.|   .| ++++++...         
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTS
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccc
Confidence            35788988666666666 6999999999866544332211     11  2568999   68 677777544         


Q ss_pred             ----CCCeEEEEECC---CCcEEEEecC--------------CCCeEEEEEcCCCCEEEEEE-C-CeEEEEEcCCCcccc
Q 004203          170 ----LDHEVRLWNAS---TAECIGSRDF--------------YRPIASIAFHASGELLAVAS-G-HKLYIWRYNMREETS  226 (768)
Q Consensus       170 ----~DgtVrLWDl~---sg~~i~~l~h--------------~~~V~svafSPDG~~LatgS-d-d~I~IWDl~t~~~~~  226 (768)
                          .+..|..||+.   +++.+.....              ......++..++|+.-++.+ . +.|..++.+..... 
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~-  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS-  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE-
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe-
Confidence                26789999999   7877655431              12478999999999888777 4 45777766544221 


Q ss_pred             CCeEee----cCCCCeEEEEEccCCCeEEEEE
Q 004203          227 SPRIVL----RTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       227 ~~~~l~----~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                       .....    ......+.|+++|||+.|++..
T Consensus       173 -~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~  203 (334)
T 2p9w_A          173 -TFAWESGNGGQRPGYSGITFDPHSNKLIAFG  203 (334)
T ss_dssp             -EEEECCCCSSSCCSCSEEEEETTTTEEEEES
T ss_pred             -eeeecCCCcccccCcceEEEeCCCCEEEEEc
Confidence             11111    1123467999999999777653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.27  E-value=0.74  Score=47.67  Aligned_cols=145  Identities=12%  Similarity=0.073  Sum_probs=87.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE---EEEEe------cCCCCcEEEEEccCCCCEEEEEeCCC-eEEEE
Q 004203          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLH------GHRRTPWVVRFHPLNPTIIASGSLDH-EVRLW  177 (768)
Q Consensus       108 ~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~---l~~l~------gH~g~V~sVafSP~dg~lLaSgS~Dg-tVrLW  177 (768)
                      ....++++.+++.++++.-.++.+.++++.....   +....      ........++|+|.++.++++...+. .|+.|
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            5678999999998777766788999998765432   22222      12334688999994334555444444 55555


Q ss_pred             EC-CCCcEEEEec--------CCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEeec-------CCCCeE
Q 004203          178 NA-STAECIGSRD--------FYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR-------TRRSLR  239 (768)
Q Consensus       178 Dl-~sg~~i~~l~--------h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~~l~~-------h~~~V~  239 (768)
                      +- .....+....        .-..+..++++|....|.+-++..  +.++|.... ... ...+..       .-....
T Consensus       150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~-~~~L~~g~~~l~~~~~qpE  227 (255)
T 3qqz_A          150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIG-EMSLTKGSRGLSHNIKQAE  227 (255)
T ss_dssp             ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEE-EEECSTTGGGCSSCCCSEE
T ss_pred             cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEE-EEEcCCccCCcccccCCCC
Confidence            51 1111112111        234678999999887777777543  888887654 221 112221       124678


Q ss_pred             EEEEccCCCeEEEEEe
Q 004203          240 AVHFHPHAAPLLLTAE  255 (768)
Q Consensus       240 sVaFSPDG~~LlaS~s  255 (768)
                      .|+|.++|+ +.++++
T Consensus       228 Gia~d~~G~-lyIvsE  242 (255)
T 3qqz_A          228 GVAMDASGN-IYIVSE  242 (255)
T ss_dssp             EEEECTTCC-EEEEET
T ss_pred             eeEECCCCC-EEEEcC
Confidence            999999998 444443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.25  E-value=0.093  Score=60.93  Aligned_cols=176  Identities=9%  Similarity=-0.010  Sum_probs=104.1

Q ss_pred             cCCCEEEEEe-CCCeEEEEeCCCCC---CC--CCCCCeEEEEECCCCCEEEEEe-CC-----CeEEEEeCCCCeEEEE--
Q 004203           79 DARRGLASWV-EAESLHHLRPKYCP---LS--PPPRSTIAAAFSPDGKTLASTH-GD-----HTVKIIDCQTGSCLKV--  144 (768)
Q Consensus        79 d~g~~LvSgs-~DgsIrlWd~~t~~---L~--gH~~~VtslafSPDG~~LaSgS-~D-----gtVrVWDl~tg~~l~~--  144 (768)
                      .++..++.|+ .+..+.+||..+.+   +.  ...+.-.+++..+||++++.|+ .+     ..+.+||..+.+-...  
T Consensus       252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~  331 (656)
T 1k3i_A          252 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN  331 (656)
T ss_dssp             TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETT
T ss_pred             CCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCC
Confidence            3455556665 45689999988652   11  1122234566667999999888 34     5799999987653221  


Q ss_pred             -----------------------EecCCC---------------------------------------CcEEEEEccCCC
Q 004203          145 -----------------------LHGHRR---------------------------------------TPWVVRFHPLNP  162 (768)
Q Consensus       145 -----------------------l~gH~g---------------------------------------~V~sVafSP~dg  162 (768)
                                             +-+..+                                       .-..+.|...++
T Consensus       332 ~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~  411 (656)
T 1k3i_A          332 AKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG  411 (656)
T ss_dssp             SCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTT
T ss_pred             ccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCC
Confidence                                   000000                                       012223323367


Q ss_pred             CEEEEEeCCC-----------eEEEEECCCCcEEEEe----cCCCCeEEEEEcCCCCEEEEEEC------------CeEE
Q 004203          163 TIIASGSLDH-----------EVRLWNASTAECIGSR----DFYRPIASIAFHASGELLAVASG------------HKLY  215 (768)
Q Consensus       163 ~lLaSgS~Dg-----------tVrLWDl~sg~~i~~l----~h~~~V~svafSPDG~~LatgSd------------d~I~  215 (768)
                      ++++.|+.++           .|.+||..+.+.....    .......+++..|+|+++++|+.            ..+.
T Consensus       412 ~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~  491 (656)
T 1k3i_A          412 KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPE  491 (656)
T ss_dssp             EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCE
T ss_pred             eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceE
Confidence            7888877532           6888888877654433    22223345677889999999872            2389


Q ss_pred             EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +||..+.+.... ......+.......+.|||+.+++++.
T Consensus       492 ~ydp~t~~W~~~-~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          492 IYVPEQDTFYKQ-NPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEGGGTEEEEC-CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EEcCCCCceeec-CCCCCccccccHhhcCCCcEEEecCCC
Confidence            999987653221 111122333455667899997777664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.17  E-value=0.35  Score=52.14  Aligned_cols=171  Identities=10%  Similarity=0.028  Sum_probs=106.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC-----CCC----C--CCCeEEEEE---CCCCCEEEEEe-------------CCCeEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCP-----LSP----P--PRSTIAAAF---SPDGKTLASTH-------------GDHTVKI  133 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~-----L~g----H--~~~Vtslaf---SPDG~~LaSgS-------------~DgtVrV  133 (768)
                      +..+++-...+.|..|+...+.     +.+    .  ...+.++.|   .|+++++++..             .+..|..
T Consensus        25 g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~  104 (334)
T 2p9w_A           25 QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHS  104 (334)
T ss_dssp             TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEE
T ss_pred             CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEE
Confidence            3444444467777777776331     111    1  113689999   68888877543             2678999


Q ss_pred             EeCC---CCeEEEEEe--cC-----------CCCcEEEEEccCCCCEEEEEeCC-CeEEEEECCCCcEEEEec--C----
Q 004203          134 IDCQ---TGSCLKVLH--GH-----------RRTPWVVRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSRD--F----  190 (768)
Q Consensus       134 WDl~---tg~~l~~l~--gH-----------~g~V~sVafSP~dg~lLaSgS~D-gtVrLWDl~sg~~i~~l~--h----  190 (768)
                      ||+.   +++.+....  ..           ......++..+ +|+..++++.- +.|...|.... ....+.  .    
T Consensus       105 ~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~  182 (334)
T 2p9w_A          105 FNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGG  182 (334)
T ss_dssp             EESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSS
T ss_pred             EcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcc
Confidence            9999   887765543  11           12377899999 89999988888 88777776544 222221  1    


Q ss_pred             -CCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEee--c---CCCCeEEE-EEccCCCeEEEEEe
Q 004203          191 -YRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVL--R---TRRSLRAV-HFHPHAAPLLLTAE  255 (768)
Q Consensus       191 -~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~--~---h~~~V~sV-aFSPDG~~LlaS~s  255 (768)
                       ....+.++++|+|+.|++... ++|..+|+.+...  .+..+.  +   .-.....+ .---+|+.++++..
T Consensus       183 ~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~--~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          183 QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYA--WPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSC--CCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcc--eeecccccCCcccccCcccccccccCCEEEEEEcC
Confidence             123679999999998887764 4599999884322  012222  2   12234443 33347776566654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.12  E-value=0.054  Score=63.89  Aligned_cols=163  Identities=9%  Similarity=-0.005  Sum_probs=99.3

Q ss_pred             CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCC----CeEEEEEecCCCCcEEEEEccC
Q 004203           89 EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQT----GSCLKVLHGHRRTPWVVRFHPL  160 (768)
Q Consensus        89 ~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~t----g~~l~~l~gH~g~V~sVafSP~  160 (768)
                      ....|+..++....   +......+.+++|++++..|+.+. ..+.|+++++.+    ......+.........|++.+.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            34567777776542   233345677899999777766554 467899999875    2222222222233556788764


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecCCC
Q 004203          161 NPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRR  236 (768)
Q Consensus       161 dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h-~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h~~  236 (768)
                      +++++++-...+.|.++|+........+.. ......++++|++.+|+.+..   ++|++++++.....   ..+...-.
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~---~l~~~~l~  540 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVTENIQ  540 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---EESCSSCS
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---EEEeCCCC
Confidence            566666656678899999876544433332 234577899997776665542   45888877644321   11222335


Q ss_pred             CeEEEEEccCCCeEEEEE
Q 004203          237 SLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       237 ~V~sVaFSPDG~~LlaS~  254 (768)
                      ..+.|+|+|++..|.++-
T Consensus       541 ~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             SCCCEEECTTTCCEEEEE
T ss_pred             CccEEEEeccCCEEEEEe
Confidence            678899999877676654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.10  E-value=0.76  Score=48.57  Aligned_cols=166  Identities=9%  Similarity=-0.055  Sum_probs=100.4

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           82 RGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~L-----~gH~~~VtslafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      ...++-...+.|..++......     ...-....++++.+.+..| ++-...+.|.+++++.......+.........+
T Consensus        48 ~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~gi  127 (318)
T 3sov_A           48 LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI  127 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             EEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEE
Confidence            3334444566777777765421     1122356689998755544 455567899999987654444444445668899


Q ss_pred             EEccCCCCEEEEEe--CCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeE
Q 004203          156 RFHPLNPTIIASGS--LDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRI  230 (768)
Q Consensus       156 afSP~dg~lLaSgS--~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~  230 (768)
                      ++.| .+..|+.+.  ..+.|...++.......... .-..-+.++|++++..|+.+..  +.|..+|++.....   ..
T Consensus       128 avdp-~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~  203 (318)
T 3sov_A          128 ALDP-SSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ---AV  203 (318)
T ss_dssp             EEEG-GGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EE
T ss_pred             EEeC-CCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE---EE
Confidence            9999 444444444  25788888886433222222 2235678999999888888773  45999998754321   12


Q ss_pred             eecCCCCeEEEEEccCCCeEEEE
Q 004203          231 VLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       231 l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ..........+++..  ..++.+
T Consensus       204 ~~~~~~~P~glav~~--~~lywt  224 (318)
T 3sov_A          204 VKGSLPHPFALTLFE--DILYWT  224 (318)
T ss_dssp             ECSCCSCEEEEEEET--TEEEEE
T ss_pred             ecCCCCCceEEEEeC--CEEEEE
Confidence            222345567777753  334444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.08  E-value=0.023  Score=65.60  Aligned_cols=82  Identities=17%  Similarity=0.255  Sum_probs=57.9

Q ss_pred             CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeE--EEEEcCCCC-
Q 004203          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA--SIAFHASGE-  204 (768)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~--svafSPDG~-  204 (768)
                      ++.|+.||+.+|+.+..+.... .+..-.... .+.+++.++.|+.|+.||.++|+.+..+.....+.  -+.|..+|+ 
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            5889999999999887765432 222212222 46678889999999999999999998876554443  366777887 


Q ss_pred             EEEEEEC
Q 004203          205 LLAVASG  211 (768)
Q Consensus       205 ~LatgSd  211 (768)
                      ++++.+.
T Consensus       543 Yv~~~~G  549 (582)
T 1flg_A          543 YLGVTVG  549 (582)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcc
Confidence            4444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.03  E-value=0.017  Score=66.39  Aligned_cols=81  Identities=9%  Similarity=0.074  Sum_probs=56.3

Q ss_pred             CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCe--EEEEEcCCCCE
Q 004203          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGEL  205 (768)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V--~svafSPDG~~  205 (768)
                      ++.|..||+.+|+.+..+... ..+....+.. .+.+++.++.|+.|+.||.++|+.+..+.....+  ..+.+..+|+.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence            578999999999988877633 2233323333 4567777999999999999999999887644332  22445677875


Q ss_pred             EEEEE
Q 004203          206 LAVAS  210 (768)
Q Consensus       206 LatgS  210 (768)
                      ++...
T Consensus       521 yv~~~  525 (571)
T 2ad6_A          521 YIGSM  525 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.03  E-value=0.31  Score=51.35  Aligned_cols=138  Identities=9%  Similarity=0.046  Sum_probs=84.4

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC--CCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC--QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl--~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg  182 (768)
                      ++...+..+++.+++++++.+......+-+|-  .+.+.+.  ......+..+.+.+ ++.++ .++.+|.+++++...+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNS  235 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEE
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCC
Confidence            45668999999999888876654444444442  2333332  23456788899988 66655 4556788887753334


Q ss_pred             cEEEEec-----CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEee---cCCCCeEEEEEccCCCeE
Q 004203          183 ECIGSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVL---RTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       183 ~~i~~l~-----h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~---~h~~~V~sVaFSPDG~~L  250 (768)
                      +....+.     ....+..++|.+++.+++++.++.| ++..+.++.-.   .+.   .....+..+.|.++++.+
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~---~~~~~~~~~~~~~~v~~~~~~~~~  307 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQ---QDVDVKKVPSNFYKILFFSPDQGF  307 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCE---ECGGGTTSSSCCCEEEEEETTEEE
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccE---EcCccCCCCCCeEEEEEECCCceE
Confidence            4333222     2235889999999888888777767 34444443211   222   123567888888666533

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.02  E-value=0.26  Score=53.68  Aligned_cols=173  Identities=10%  Similarity=0.093  Sum_probs=108.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCCCCC-CCeEEEEECCC----CCE--EE--EEeC--CCeEEEEeC--CCCeEEEEEec-
Q 004203           82 RGLASWVEAESLHHLRPKYCPLSPPP-RSTIAAAFSPD----GKT--LA--STHG--DHTVKIIDC--QTGSCLKVLHG-  147 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~L~gH~-~~VtslafSPD----G~~--La--SgS~--DgtVrVWDl--~tg~~l~~l~g-  147 (768)
                      ..++.-.+++-+.++|+.-..+.... +.++.+..-|+    |+.  |+  +.-.  +.+|.+|++  .+++ +..+.. 
T Consensus        41 s~ii~t~k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~  119 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDP  119 (355)
T ss_dssp             CEEEEEETTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCT
T ss_pred             cEEEEEcCCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecccc
Confidence            44555556677888888444332222 56777777662    322  33  3333  578999966  4444 444421 


Q ss_pred             -----CC-CCcEEEEE--ccCCCC-EEEEEeCCCeEEEEECC-------CCcEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 004203          148 -----HR-RTPWVVRF--HPLNPT-IIASGSLDHEVRLWNAS-------TAECIGSRDFYRPIASIAFHASGELLAVASG  211 (768)
Q Consensus       148 -----H~-g~V~sVaf--SP~dg~-lLaSgS~DgtVrLWDl~-------sg~~i~~l~h~~~V~svafSPDG~~LatgSd  211 (768)
                           .. ..++.+++  +|.++. +++....++.+..|++.       +.+.++++...+.+..+..++....|+++-.
T Consensus       120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eE  199 (355)
T 3amr_A          120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEE  199 (355)
T ss_dssp             TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred             ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecc
Confidence                 11 45677887  674454 57777888999999883       3356777888889999999999999999986


Q ss_pred             Ce-EEEEEcCCCcccc-CCeEeec--C-CCCeEEEEE--ccCCC-eEEEEEe
Q 004203          212 HK-LYIWRYNMREETS-SPRIVLR--T-RRSLRAVHF--HPHAA-PLLLTAE  255 (768)
Q Consensus       212 d~-I~IWDl~t~~~~~-~~~~l~~--h-~~~V~sVaF--SPDG~-~LlaS~s  255 (768)
                      +. |..+|.+...... .......  + ...+..|++  .++|+ +|++++.
T Consensus       200 d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ  251 (355)
T 3amr_A          200 DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ  251 (355)
T ss_dssp             TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence            54 7777755322100 0111222  2 247888888  56777 6777764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.98  E-value=0.57  Score=56.19  Aligned_cols=166  Identities=9%  Similarity=-0.037  Sum_probs=101.5

Q ss_pred             EEEEEeCCCeEEEEeCCCC-------C-CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203           83 GLASWVEAESLHHLRPKYC-------P-LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~-------~-L~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V~  153 (768)
                      ..++-...+.|+.+++...       . +........+|++.+.++.|+.+ ...+.|.+.+++.......+.......+
T Consensus       438 lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~  517 (791)
T 3m0c_C          438 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR  517 (791)
T ss_dssp             EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE
T ss_pred             eEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcc
Confidence            3334445567777776532       1 12234556789999877655544 5578999999986655555554556688


Q ss_pred             EEEEccCCCCEEEEEeCC-CeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCe
Q 004203          154 VVRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPR  229 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~D-gtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~  229 (768)
                      .|++.|..+.++++-..+ +.|...++........+. .-.....|++++.+..|+.+..  ++|..+|++......   
T Consensus       518 gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~---  594 (791)
T 3m0c_C          518 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT---  594 (791)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---
T ss_pred             eEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE---
Confidence            999999445555443333 689999987544433333 2246789999998888888763  449999986554321   


Q ss_pred             Eeec--CCCCeEEEEEccCCCeEEEE
Q 004203          230 IVLR--TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       230 ~l~~--h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .+..  .-....+|++.  +.+|..+
T Consensus       595 v~~~~~~l~~P~glav~--~~~lYwt  618 (791)
T 3m0c_C          595 ILEDEKRLAHPFSLAVF--EDKVFWT  618 (791)
T ss_dssp             EEECTTTTSSEEEEEEE--TTEEEEE
T ss_pred             EecCCCccCCCCEEEEe--CCEEEEE
Confidence            2222  12344566663  3345544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.90  E-value=0.45  Score=51.66  Aligned_cols=161  Identities=12%  Similarity=0.074  Sum_probs=97.8

Q ss_pred             CCCeEEEEeCCCC--C-----CCC-----CCCCeEEEEECC--CCC--EEEEEeC--CCeEEEEeCCCC--e--EEEEEe
Q 004203           89 EAESLHHLRPKYC--P-----LSP-----PPRSTIAAAFSP--DGK--TLASTHG--DHTVKIIDCQTG--S--CLKVLH  146 (768)
Q Consensus        89 ~DgsIrlWd~~t~--~-----L~g-----H~~~VtslafSP--DG~--~LaSgS~--DgtVrVWDl~tg--~--~l~~l~  146 (768)
                      .+|.|.++|....  +     +.+     ..-....+.+.+  ||.  ++++-..  +.+|.+|+++.+  .  .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6888888887632  1     112     234677888765  454  3444343  567888876553  2  223444


Q ss_pred             cCC-CCcEEEEEccCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEE
Q 004203          147 GHR-RTPWVVRFHPLNPTIIASGSL-----------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV  208 (768)
Q Consensus       147 gH~-g~V~sVafSP~dg~lLaSgS~-----------------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~Lat  208 (768)
                      +.. ...+.+.+.+ ++.+.++...                 .+.|+-+|.  ++.......-..-+.++|+||++.|++
T Consensus       161 g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence            322 3578899999 8887776541                 244555554  333333333345688999999999988


Q ss_pred             EE--CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEcc-CCCeEEEE
Q 004203          209 AS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP-HAAPLLLT  253 (768)
Q Consensus       209 gS--dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSP-DG~~LlaS  253 (768)
                      +.  .++|+.||++........ .........-.+++.+ +|+..++.
T Consensus       238 adt~~~~I~~~~~~~~g~l~~~-~~~~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWTLTPL-RVLSFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEE-EEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             EeCCCCeEEEEEECCCCcEecC-EEEeCCCCCceEEEeCCCCcEEEEe
Confidence            87  355999999743222211 1223356678899999 59865544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.89  E-value=0.74  Score=53.45  Aligned_cols=163  Identities=9%  Similarity=-0.036  Sum_probs=103.1

Q ss_pred             eCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCeE-EEEEecCCCCcEEEEEccC
Q 004203           88 VEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPL  160 (768)
Q Consensus        88 s~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~tg~~-l~~l~gH~g~V~sVafSP~  160 (768)
                      .....|+..++...     .+...-+...+++|++.+..|+.+.. .+.|+.++++.... ...+...-.....+++.+.
T Consensus        15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~   94 (619)
T 3s94_A           15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   94 (619)
T ss_dssp             ECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred             eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence            34566777776543     12334556889999997776665544 68899999876542 3344433356889999985


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecCCC
Q 004203          161 NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRR  236 (768)
Q Consensus       161 dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h~~  236 (768)
                      +++++++-...+.|.+.|+......... ..-.....++++|.+.+|+.+..   .+|...+++......   .....-.
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~---l~~~~~~  171 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI---IINSEIY  171 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EECSSCS
T ss_pred             CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE---EEeCCCC
Confidence            5666666667789999999765433333 23345678999998777776663   347777776543211   2223456


Q ss_pred             CeEEEEEccCCCeEEEE
Q 004203          237 SLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       237 ~V~sVaFSPDG~~LlaS  253 (768)
                      ..+.|+++++++.|..+
T Consensus       172 ~P~Glald~~~~~LY~a  188 (619)
T 3s94_A          172 WPNGLTLDYEEQKLYWA  188 (619)
T ss_dssp             SEEEEEEETTTTEEEEE
T ss_pred             CCcEEEEEccCCEEEEE
Confidence            78999999987767665

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.76  E-value=0.28  Score=55.67  Aligned_cols=139  Identities=14%  Similarity=0.099  Sum_probs=89.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEE-------CCCCCEEEEEeCCC-------eEEEEeCCC-C
Q 004203           82 RGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAF-------SPDGKTLASTHGDH-------TVKIIDCQT-G  139 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~L~-------gH~~~Vtslaf-------SPDG~~LaSgS~Dg-------tVrVWDl~t-g  139 (768)
                      ...++......|++.|++.+.+.       ........++|       +++|++|+++...+       .|.+++... +
T Consensus       153 ~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G  232 (496)
T 3kya_A          153 HLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADG  232 (496)
T ss_dssp             EEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTS
T ss_pred             EEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCC
Confidence            33444444567888998876321       12235899999       99999777776653       377776443 2


Q ss_pred             eEE-----EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-------CCcE--------------EEEecCCCC
Q 004203          140 SCL-----KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-------TAEC--------------IGSRDFYRP  193 (768)
Q Consensus       140 ~~l-----~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-------sg~~--------------i~~l~h~~~  193 (768)
                      +..     ..+... .....++++|+++.++++-..++.|+.+|+.       +++.              +........
T Consensus       233 ~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~  311 (496)
T 3kya_A          233 TFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSW  311 (496)
T ss_dssp             CCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSC
T ss_pred             ceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCC
Confidence            221     222221 2345678999667777777788899999997       5543              112223344


Q ss_pred             eEEEEEcCCCCEEEEEE--CCeEEEEEcCC
Q 004203          194 IASIAFHASGELLAVAS--GHKLYIWRYNM  221 (768)
Q Consensus       194 V~svafSPDG~~LatgS--dd~I~IWDl~t  221 (768)
                      ...++|+|+|++|+++.  .+.|+.+|++.
T Consensus       312 p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence            57899999999777765  34598877654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.71  E-value=0.25  Score=53.00  Aligned_cols=141  Identities=17%  Similarity=0.212  Sum_probs=79.9

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE--Ee---cCCCCcEEEEEccC---CCCEEEEEeCC-----CeEE
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV--LH---GHRRTPWVVRFHPL---NPTIIASGSLD-----HEVR  175 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~--l~---gH~g~V~sVafSP~---dg~lLaSgS~D-----gtVr  175 (768)
                      .-..++|.|||++++ +..++.|++++  +++....  +.   ........|+|+|+   ++.++++-..+     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            467999999998554 55669999999  4543221  11   12345788999993   25555554432     5788


Q ss_pred             EEECCCCcE-----E-EEecC----CCCeEEEEEcCCCCEEEEEEC--------------CeEEEEEcCCCccc------
Q 004203          176 LWNASTAEC-----I-GSRDF----YRPIASIAFHASGELLAVASG--------------HKLYIWRYNMREET------  225 (768)
Q Consensus       176 LWDl~sg~~-----i-~~l~h----~~~V~svafSPDG~~LatgSd--------------d~I~IWDl~t~~~~------  225 (768)
                      .|+...++.     + ..+..    ......++|.|||.+.++.++              ++|..+|.+..-..      
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            888775421     1 11221    123468999999975555332              24666665431000      


Q ss_pred             ---cCCeEeecCCCCeEEEEEcc-CCCeEEE
Q 004203          226 ---SSPRIVLRTRRSLRAVHFHP-HAAPLLL  252 (768)
Q Consensus       226 ---~~~~~l~~h~~~V~sVaFSP-DG~~Lla  252 (768)
                         .........-.....++|+| +|..+++
T Consensus       189 ~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~  219 (352)
T 2ism_A          189 RRGARPEVYSLGHRNPQGLAWHPKTGELFSS  219 (352)
T ss_dssp             CTTSCTTEEEECCSEECCCEECTTTCCEEEE
T ss_pred             CCCCCccEEEEcCCCcccEEEECCCCCEEEE
Confidence               00111222224567899999 6664444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.68  E-value=0.12  Score=57.35  Aligned_cols=144  Identities=12%  Similarity=0.041  Sum_probs=84.7

Q ss_pred             CCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC---C-eEEEEECCC
Q 004203          108 RSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD---H-EVRLWNAST  181 (768)
Q Consensus       108 ~~VtslafSPD--G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~D---g-tVrLWDl~s  181 (768)
                      ....+++|+|+  +..|+.+...+.|+++|.++++..... ........++|++ +++++++-...   . .+...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCC
Confidence            34678999995  455666655589999999888765544 3445688999999 77755544321   1 233333322


Q ss_pred             CcE-EEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          182 AEC-IGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       182 g~~-i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      +.. ...+........++++|++..|+++.  .+.|+.+|..++.... ..........-..++|+|+|++|.++-
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            211 11222234456788999444444444  3459999987654311 011112223345799999999666554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.59  E-value=0.087  Score=61.64  Aligned_cols=144  Identities=13%  Similarity=0.054  Sum_probs=90.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC----C-CCCCeEEEEECC--CCCEEEEEeC------CCeEEEEeCCCCeEEEEEec
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLS----P-PPRSTIAAAFSP--DGKTLASTHG------DHTVKIIDCQTGSCLKVLHG  147 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~----g-H~~~VtslafSP--DG~~LaSgS~------DgtVrVWDl~tg~~l~~l~g  147 (768)
                      +..|+.+..|+.|..+|.+++++.    . .......+..+|  .+..++.+..      ++.|+.+|.++|+.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            456777788899999998877421    1 000000111112  2335555543      58999999999999887753


Q ss_pred             CCC-------------------------------CcEEEEEccCCCCEEEEEeCCC-------------------eEEEE
Q 004203          148 HRR-------------------------------TPWVVRFHPLNPTIIASGSLDH-------------------EVRLW  177 (768)
Q Consensus       148 H~g-------------------------------~V~sVafSP~dg~lLaSgS~Dg-------------------tVrLW  177 (768)
                      ..+                               ....+++.| +..+++.++.++                   .|..+
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            110                               112367888 667787777665                   49999


Q ss_pred             ECCCCcEEEEecCC----------CCeEEEEEcCCCC---EEEEEEC-CeEEEEEcCCCccc
Q 004203          178 NASTAECIGSRDFY----------RPIASIAFHASGE---LLAVASG-HKLYIWRYNMREET  225 (768)
Q Consensus       178 Dl~sg~~i~~l~h~----------~~V~svafSPDG~---~LatgSd-d~I~IWDl~t~~~~  225 (768)
                      |.++|+.+..+...          .+.....+..+|+   .|++++. +.++++|..+++..
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            99999998776421          2233333444675   5666664 45999999998764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.51  E-value=0.25  Score=53.16  Aligned_cols=140  Identities=14%  Similarity=0.137  Sum_probs=79.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEe---cCCCCcEEEEEccC---CCCEEEEEeC---C----CeE
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLH---GHRRTPWVVRFHPL---NPTIIASGSL---D----HEV  174 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~---gH~g~V~sVafSP~---dg~lLaSgS~---D----gtV  174 (768)
                      ...+++|.|||++++ +..++.|+++| .+++ .+..+.   ........|+|+|+   ++.++++-+.   +    ..|
T Consensus        30 ~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            467899999998554 55669999998 4565 222211   12245788999993   3555555442   3    567


Q ss_pred             EEEECCCC--c---E--E-EEec--CCCCeEEEEEcCCCCEEEEEEC--------------CeEEEEEcCCCccc-----
Q 004203          175 RLWNASTA--E---C--I-GSRD--FYRPIASIAFHASGELLAVASG--------------HKLYIWRYNMREET-----  225 (768)
Q Consensus       175 rLWDl~sg--~---~--i-~~l~--h~~~V~svafSPDG~~LatgSd--------------d~I~IWDl~t~~~~-----  225 (768)
                      ..|+...+  .   .  + ..+.  .......++|.|||.+.++.++              ++|..+|.+..-..     
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            77887654  1   1  1 1122  1123467999999986655432              24555555432100     


Q ss_pred             cCCeEeecCCCCeEEEEEcc-CCCeEE
Q 004203          226 SSPRIVLRTRRSLRAVHFHP-HAAPLL  251 (768)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSP-DG~~Ll  251 (768)
                      .......++ .....++|+| +|+.++
T Consensus       188 ~~~i~a~G~-rnp~Gla~d~~~g~l~v  213 (354)
T 3a9g_A          188 NSPIWSYGH-RNPQGIDWHRASGVMVA  213 (354)
T ss_dssp             TCCEEEECC-SCCCEEEECTTTCCEEE
T ss_pred             CCcEEEEcc-CCcceEEEeCCCCCEEE
Confidence            001122233 4567899999 666443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.46  E-value=0.35  Score=51.06  Aligned_cols=181  Identities=9%  Similarity=0.076  Sum_probs=103.7

Q ss_pred             CCCCCEEEEEe--CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC--------------CeEEEEEC
Q 004203          116 SPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD--------------HEVRLWNA  179 (768)
Q Consensus       116 SPDG~~LaSgS--~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~D--------------gtVrLWDl  179 (768)
                      +.+|.+|+...  .++.|+..+.+... ...+...  .  +--+++ ++++|+.....              ..|+..++
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~--~--~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND--T--AMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE--E--EEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC--c--eeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            34677777664  36778888876544 3333322  1  234578 77777776543              36888888


Q ss_pred             CCCcEEEEecCCCCeEEEEEcCCCCEEEEEE---CCe--EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          180 STAECIGSRDFYRPIASIAFHASGELLAVAS---GHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       180 ~sg~~i~~l~h~~~V~svafSPDG~~LatgS---dd~--I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ..++.......  .  ...|++++++|+...   ++.  |+..+++....    ..+..+..    ..|+++|+.|..+.
T Consensus        96 dg~~~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~----~~lt~~~~----~~~~~~g~~iy~t~  163 (302)
T 3s25_A           96 NGHGSTVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK----KKIKNHYL----FTCNTSDRYFYYNN  163 (302)
T ss_dssp             TSCCCEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC----EEEESSCC----CCSEEETTEEEEEC
T ss_pred             CCCcceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe----EEEeCCCc----eEeeEECCEEEEEe
Confidence            87764443322  1  237888999999876   333  77777765432    23444432    45788999888764


Q ss_pred             eeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEe
Q 004203          255 EVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQ  334 (768)
Q Consensus       255 svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~  334 (768)
                      .      +..........|.                ....+...      +...| +.|+++.|++....  .+..+...
T Consensus       164 ~------g~~~Iy~~~l~g~----------------~~~~l~~~------~~~~~-~~P~g~~iy~t~~~--~~~~I~~~  212 (302)
T 3s25_A          164 P------KNGQLYRYDTASQ----------------SEALFYDC------NCYKP-VVLDDTNVYYMDVN--RDNAIVHV  212 (302)
T ss_dssp             T------TTCCEEEEETTTT----------------EEEEEECS------CEEEE-EEEETTEEEEEEGG--GTTEEEEE
T ss_pred             C------CCceEEEEECCCC----------------CEEEEeCC------Cccce-eeecCCEEEEEEcC--CCcEEEEE
Confidence            3      1111111111221                11111111      11233 56999999986322  23678888


Q ss_pred             ccCCCceeeee
Q 004203          335 SLRSSSSVRLL  345 (768)
Q Consensus       335 ~~~ss~~~rl~  345 (768)
                      .++++..++|+
T Consensus       213 ~ldG~~~~~Lt  223 (302)
T 3s25_A          213 NINNPNPVVLT  223 (302)
T ss_dssp             CSSSCCCEECS
T ss_pred             ECCCCCeEEEe
Confidence            99988877665

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.44  E-value=0.49  Score=52.87  Aligned_cols=102  Identities=14%  Similarity=0.186  Sum_probs=61.8

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE--EEec------CCCCcEEEEEccC---CCCEEEEEeC-------
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLHG------HRRTPWVVRFHPL---NPTIIASGSL-------  170 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--~l~g------H~g~V~sVafSP~---dg~lLaSgS~-------  170 (768)
                      ...+++|.|||+++++-...+.|++++..+++...  .+..      ..+....|+|+|+   ++.+.++-+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            45799999999977765554579999876665432  2221      1344668999994   4555554432       


Q ss_pred             -----CCeEEEEECCCC--cE-----EE-Eec--CCCCeEEEEEcCCCCEEEEEE
Q 004203          171 -----DHEVRLWNASTA--EC-----IG-SRD--FYRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       171 -----DgtVrLWDl~sg--~~-----i~-~l~--h~~~V~svafSPDG~~LatgS  210 (768)
                           ...|.-|++..+  +.     +. .+.  .......++|.|||++.++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                 235666665432  11     11 122  123568899999998666554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.43  E-value=0.44  Score=51.62  Aligned_cols=143  Identities=15%  Similarity=0.129  Sum_probs=83.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE--E----ecCCCCcEEEEEccC---CCCEEEEEe--CCCeEEEE
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV--L----HGHRRTPWVVRFHPL---NPTIIASGS--LDHEVRLW  177 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~--l----~gH~g~V~sVafSP~---dg~lLaSgS--~DgtVrLW  177 (768)
                      .-..++|.|||+++++--..|.|++++.++++....  +    ....+....|+++|+   ++.+.++-+  .++.|.-|
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            467999999999877766689999998776654322  1    122345788999993   355544322  34456666


Q ss_pred             ECCCC----------cEEE-Eec--CCCCeEEEEEcCCCCEEEEEEC--------------CeEEEEEcCCCccc-----
Q 004203          178 NASTA----------ECIG-SRD--FYRPIASIAFHASGELLAVASG--------------HKLYIWRYNMREET-----  225 (768)
Q Consensus       178 Dl~sg----------~~i~-~l~--h~~~V~svafSPDG~~LatgSd--------------d~I~IWDl~t~~~~-----  225 (768)
                      .+..+          +.+. .+.  ....-..++|.|||.+.++.++              ++|..++.+..-..     
T Consensus       113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~  192 (347)
T 3das_A          113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFP  192 (347)
T ss_dssp             EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSST
T ss_pred             EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCC
Confidence            65541          1111 121  1223457999999986666432              34555565432100     


Q ss_pred             cCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          226 SSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                      .......++ .....++|+|+|..+++
T Consensus       193 ~~~i~a~G~-RNp~Gla~dp~G~L~~~  218 (347)
T 3das_A          193 GSPVYSYGH-RNVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             TCCEEEBCC-SBCCEEEECTTCCEEEE
T ss_pred             CCeEEeeCC-CCcceEEECCCCCEEEE
Confidence            011122333 45678999999874433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.30  E-value=0.22  Score=53.52  Aligned_cols=142  Identities=17%  Similarity=0.042  Sum_probs=78.8

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-------cCCCCcEEEEEccC---CCCEEEEEeC-------C
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-------GHRRTPWVVRFHPL---NPTIIASGSL-------D  171 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-------gH~g~V~sVafSP~---dg~lLaSgS~-------D  171 (768)
                      ....++|.|||++|+.+...+.|++++.+ ++....+.       ...+....++|+|+   ++.+.++-+.       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            35789999999945556678999999853 43221111       11234678999994   3555555332       2


Q ss_pred             CeEEEEECCCC--c--EEEE-e---c----CCCCeEEEEEcCCCCEEEEEEC--------------CeEEEEEcCCCccc
Q 004203          172 HEVRLWNASTA--E--CIGS-R---D----FYRPIASIAFHASGELLAVASG--------------HKLYIWRYNMREET  225 (768)
Q Consensus       172 gtVrLWDl~sg--~--~i~~-l---~----h~~~V~svafSPDG~~LatgSd--------------d~I~IWDl~t~~~~  225 (768)
                      ..|..|++..+  +  ..+. +   .    ....-..++|.|||.+.++.++              ++|..+|.+..-..
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35666776543  1  1111 1   1    1112357999999965444433              25777776543100


Q ss_pred             c---------CCeEeecCCCCeEEEEEcc-CCCeEE
Q 004203          226 S---------SPRIVLRTRRSLRAVHFHP-HAAPLL  251 (768)
Q Consensus       226 ~---------~~~~l~~h~~~V~sVaFSP-DG~~Ll  251 (768)
                      .         ........-.....++|+| +|+.++
T Consensus       178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~  213 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWL  213 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEE
T ss_pred             CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEE
Confidence            0         0112222235678999999 665333

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.29  E-value=0.52  Score=51.23  Aligned_cols=129  Identities=14%  Similarity=0.139  Sum_probs=90.6

Q ss_pred             CCeEEEEeC--CCCCCC---C------CC-CCeEEEEE--CCC-CC-EEEEEeCCCeEEEEeCC-------CCeEEEEEe
Q 004203           90 AESLHHLRP--KYCPLS---P------PP-RSTIAAAF--SPD-GK-TLASTHGDHTVKIIDCQ-------TGSCLKVLH  146 (768)
Q Consensus        90 DgsIrlWd~--~t~~L~---g------H~-~~Vtslaf--SPD-G~-~LaSgS~DgtVrVWDl~-------tg~~l~~l~  146 (768)
                      +++|.++++  .+.++.   .      .. ..+..+++  +|+ ++ ++++...++.+..|++.       +++.++.|.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            578999955  343321   1      11 56777888  774 54 67888889999999882       335667776


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-----CCcEEEEecC---CCCeEEEEE--cCCCC-EEEEEE--CCe
Q 004203          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-----TAECIGSRDF---YRPIASIAF--HASGE-LLAVAS--GHK  213 (768)
Q Consensus       147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-----sg~~i~~l~h---~~~V~svaf--SPDG~-~LatgS--dd~  213 (768)
                      - .+.+..+...+ ....|+.+-.|.-|..+|.+     +++.+..+..   ...+..|+.  .++++ +|++++  ++.
T Consensus       178 l-gsq~EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          178 M-NSQTEGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             C-SSCEEEEEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             C-CCCcceEEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            4 45688888888 77888888998888888865     3455655532   247888888  56777 787777  445


Q ss_pred             EEEEEcC
Q 004203          214 LYIWRYN  220 (768)
Q Consensus       214 I~IWDl~  220 (768)
                      ..+||..
T Consensus       256 ~~Vydr~  262 (355)
T 3amr_A          256 YAIYDRQ  262 (355)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9999986

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.05  E-value=3.5  Score=47.82  Aligned_cols=164  Identities=7%  Similarity=-0.051  Sum_probs=106.5

Q ss_pred             EeCCCeEEEEeCCCCCC-----C-CCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEcc
Q 004203           87 WVEAESLHHLRPKYCPL-----S-PPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP  159 (768)
Q Consensus        87 gs~DgsIrlWd~~t~~L-----~-gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP  159 (768)
                      .+..+.|+..++.....     . ..-..+.+++|++.+..|+.+ ...+.|+.++++.......+...-..+..+++.+
T Consensus       322 ~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~  401 (619)
T 3s94_A          322 LARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDW  401 (619)
T ss_dssp             EEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET
T ss_pred             EEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEec
Confidence            34456777777765421     1 123467899999965555554 4578999999886555455544445677899987


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecCC
Q 004203          160 LNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTR  235 (768)
Q Consensus       160 ~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h~  235 (768)
                      .+++++.+-+..+.|.+.++.......... .-.....++++|....|+.+..   .+|...+++.....   ......-
T Consensus       402 ~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~---~l~~~~l  478 (619)
T 3s94_A          402 VARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV---VLVNTSL  478 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEECSSC
T ss_pred             ccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE---EEEeCCC
Confidence            466666666667899999987654322222 2346789999998666666652   34777777544321   1223335


Q ss_pred             CCeEEEEEccCCCeEEEE
Q 004203          236 RSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       236 ~~V~sVaFSPDG~~LlaS  253 (768)
                      ...+.|++++++..|..+
T Consensus       479 ~~P~GlalD~~~~~LY~a  496 (619)
T 3s94_A          479 GWPNGLALDYDEGKIYWG  496 (619)
T ss_dssp             SCEEEEEEETTTTEEEEE
T ss_pred             CCCeeeEEcccCCEEEEE
Confidence            678999999977766655

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.97  E-value=0.91  Score=47.76  Aligned_cols=143  Identities=14%  Similarity=0.121  Sum_probs=84.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE-EecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC--CCC
Q 004203          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA--STA  182 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl--~sg  182 (768)
                      +...+..+.+.++++.++.+ .++.|+.- .+.|+.-.. ..++...+..+.+.+ ++.+++.+...+..+-+|-  .+.
T Consensus       120 ~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW  196 (327)
T 2xbg_A          120 LPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAW  196 (327)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSC
T ss_pred             CCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCce
Confidence            44568888888777766655 45655332 233443322 234556788999999 7777776654444444442  233


Q ss_pred             cEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEee--cCCCCeEEEEEccCCCeEEEE
Q 004203          183 ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVL--RTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       183 ~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~--~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      +.+ .......+..+++.++++.++++.++.+++.+.+.++.-. .....  .....+..+.|.+++..++++
T Consensus       197 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~-~~~~~~~~~~~~~~~v~~~~~~~~~~~g  267 (327)
T 2xbg_A          197 EPH-NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG-ELLSPLRRNSVGFLDLAYRTPNEVWLAG  267 (327)
T ss_dssp             EEE-ECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC-CCBCTTSSCCSCEEEEEESSSSCEEEEE
T ss_pred             eEC-CCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeE-eccCCcccCCcceEEEEecCCCEEEEEe
Confidence            333 2234567889999999988777666667776432222111 00111  123458899999888755543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.72  E-value=0.33  Score=56.31  Aligned_cols=81  Identities=12%  Similarity=0.114  Sum_probs=54.6

Q ss_pred             CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC--eEEEEEcCCCC-
Q 004203          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP--IASIAFHASGE-  204 (768)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~--V~svafSPDG~-  204 (768)
                      ++.|..||+.+|+.+...+.. ..+..-.... .+.+++.++.|+.|+.||.++|+.+..+.....  ..-+.|..+|+ 
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cCeEEEEECCCCCEEeEecCC-CCccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            478999999999988776522 2222111222 467777799999999999999999888754332  23355667777 


Q ss_pred             EEEEEE
Q 004203          205 LLAVAS  210 (768)
Q Consensus       205 ~LatgS  210 (768)
                      ++++.+
T Consensus       530 yv~~~~  535 (599)
T 1w6s_A          530 YVAIYY  535 (599)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            444444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.60  E-value=3.4  Score=48.00  Aligned_cols=164  Identities=6%  Similarity=-0.077  Sum_probs=103.3

Q ss_pred             EEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEE-EeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEc
Q 004203           84 LASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH  158 (768)
Q Consensus        84 LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafS  158 (768)
                      .++-..++.|..+++....    +..-.....++++.+.++.|+. -...+.|.+.+++.......+...-...+.+++.
T Consensus        52 ywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavd  131 (628)
T 4a0p_A           52 YWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALD  131 (628)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEc
Confidence            3344456677777765431    1112245678999886665554 4557899999987655444443445568899999


Q ss_pred             cCCCCEEEEE-eCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEeecCC
Q 004203          159 PLNPTIIASG-SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTR  235 (768)
Q Consensus       159 P~dg~lLaSg-S~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~l~~h~  235 (768)
                      |..+.++.+- +..+.|...++...........-.....++++++++.|+.+..  +.|..+|++....    ..+....
T Consensus       132 p~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~----~v~~~~l  207 (628)
T 4a0p_A          132 PAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR----EVIADDL  207 (628)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEECC
T ss_pred             cCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce----EEeeccC
Confidence            9445444443 1256788888876554444444456789999999998888874  4599999976543    1233334


Q ss_pred             CCeEEEEEccCCCeEEEE
Q 004203          236 RSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       236 ~~V~sVaFSPDG~~LlaS  253 (768)
                      .....+++..  ..+..+
T Consensus       208 ~~P~glav~~--~~ly~t  223 (628)
T 4a0p_A          208 PHPFGLTQYQ--DYIYWT  223 (628)
T ss_dssp             SCEEEEEEET--TEEEEE
T ss_pred             CCceEEEEEC--CEEEEe
Confidence            4566788765  345444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.22  E-value=0.2  Score=58.05  Aligned_cols=112  Identities=19%  Similarity=0.179  Sum_probs=77.0

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------eEEEEeCCCCeE--EEEEec-CCCCcEEEEEccCCCCEEEEEeC-CCeEE
Q 004203          112 AAAFSP-DGKTLASTHGDH-----------TVKIIDCQTGSC--LKVLHG-HRRTPWVVRFHPLNPTIIASGSL-DHEVR  175 (768)
Q Consensus       112 slafSP-DG~~LaSgS~Dg-----------tVrVWDl~tg~~--l~~l~g-H~g~V~sVafSP~dg~lLaSgS~-DgtVr  175 (768)
                      .+++.+ +|+.++.|+.+.           .+.+||..+++-  +..+.. +......+++.. ++++++.|+. +..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence            566777 888888887643           689999988753  233322 223334567777 8899999884 45899


Q ss_pred             EEECCCCcEEEE--ecCCCCeEEEEEcCCCCEEEEEE-C------CeEEEEEcCCCcc
Q 004203          176 LWNASTAECIGS--RDFYRPIASIAFHASGELLAVAS-G------HKLYIWRYNMREE  224 (768)
Q Consensus       176 LWDl~sg~~i~~--l~h~~~V~svafSPDG~~LatgS-d------d~I~IWDl~t~~~  224 (768)
                      +||..+.+....  +.......+++..++|+++++|+ .      +.+.+||..+.+.
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            999988765443  22333445667778999998887 2      2399999887653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.50  E-value=5.1  Score=44.74  Aligned_cols=130  Identities=15%  Similarity=0.120  Sum_probs=84.4

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CC--CC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---------
Q 004203           78 RDARRGLASWVEAESLHHLRPKYC----PL--SP--PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------  140 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L--~g--H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~---------  140 (768)
                      ..++..++... ++.||.-++...    .+  ..  .-..|..+..||+|++||..+ +..|.|..+..+.         
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            34555555543 366776666522    11  11  123578899999999999875 4589998886321         


Q ss_pred             ---EEEEEec------CCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCC--cEEEEec----------CCCCeEEE
Q 004203          141 ---CLKVLHG------HRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTA--ECIGSRD----------FYRPIASI  197 (768)
Q Consensus       141 ---~l~~l~g------H~g~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~sg--~~i~~l~----------h~~~V~sv  197 (768)
                         ..+.+.-      ....|..+.|||..  +..|++-..|++|++||+...  ++. .+.          ....|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence               1223321      24679999999943  348889999999999999862  222 221          22578889


Q ss_pred             EEcCCCCEEEEEE
Q 004203          198 AFHASGELLAVAS  210 (768)
Q Consensus       198 afSPDG~~LatgS  210 (768)
                      +|..++-.|+..+
T Consensus       186 ~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          186 EFSKDGLTLYCLN  198 (452)
T ss_dssp             EECTTSSCEEEEE
T ss_pred             EEcCCCcEEEEEe
Confidence            9998877666655

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.31  E-value=0.63  Score=47.65  Aligned_cols=138  Identities=14%  Similarity=0.111  Sum_probs=83.9

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE------EEEEe--cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC------LKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~------l~~l~--gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (768)
                      .+.+++|+|||.+.++  .++.++..+..+.+.      -..+-  +-.. ...+.|.| ++.+.++  .||.|+-++-.
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence            5679999999986655  778888888755211      12221  2222 56789999 8888777  56999888764


Q ss_pred             CCcEEEE------ec--CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc---CCeEee-cCCCCeEEEEEccCCC
Q 004203          181 TAECIGS------RD--FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETS---SPRIVL-RTRRSLRAVHFHPHAA  248 (768)
Q Consensus       181 sg~~i~~------l~--h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~---~~~~l~-~h~~~V~sVaFSPDG~  248 (768)
                      +......      +.  --..+..+.|+|+|.+-++. ++.++.+...+.....   ....+. ..-..-+-+.|.++|.
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            4222111      11  11467999999999988888 8876554333222100   011122 2223455677999998


Q ss_pred             eEEEE
Q 004203          249 PLLLT  253 (768)
Q Consensus       249 ~LlaS  253 (768)
                      .+.+.
T Consensus       195 l~~v~  199 (236)
T 1tl2_A          195 LFGVQ  199 (236)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.48  E-value=4.4  Score=43.80  Aligned_cols=141  Identities=9%  Similarity=0.101  Sum_probs=82.1

Q ss_pred             CeEEEEECCCCCEEEEEe------------CCCeEEEEeCCC--CeE-EEEEec-----CCCCcEEEEEccC-CCC-EEE
Q 004203          109 STIAAAFSPDGKTLASTH------------GDHTVKIIDCQT--GSC-LKVLHG-----HRRTPWVVRFHPL-NPT-IIA  166 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS------------~DgtVrVWDl~t--g~~-l~~l~g-----H~g~V~sVafSP~-dg~-lLa  166 (768)
                      ...+++..|+|..+++++            .+|.|.++|.++  ++. ...+.+     .......+.+.++ ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            455667777775555542            689999999874  332 122333     2235667777662 333 343


Q ss_pred             EE-eC--CCeEEEEECCCC--cE--EEEecC--CCCeEEEEEcCCCCEEEEEEC------------------CeEEEEEc
Q 004203          167 SG-SL--DHEVRLWNASTA--EC--IGSRDF--YRPIASIAFHASGELLAVASG------------------HKLYIWRY  219 (768)
Q Consensus       167 Sg-S~--DgtVrLWDl~sg--~~--i~~l~h--~~~V~svafSPDG~~LatgSd------------------d~I~IWDl  219 (768)
                      .+ ..  +.+|-+|++..+  ..  +..+.+  -...+.+++.++|.+.++...                  +.|+.+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            33 22  457777776543  22  222332  236789999999987776531                  12444443


Q ss_pred             CCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                        ++    ...+...-...+.++|+||++++.++-.
T Consensus       211 --~~----~~~~~~~l~~pNGia~spDg~~lYvadt  240 (355)
T 3sre_A          211 --ND----VRVVAEGFDFANGINISPDGKYVYIAEL  240 (355)
T ss_dssp             --TC----CEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             --Ce----EEEeecCCcccCcceECCCCCEEEEEeC
Confidence              32    1234444567899999999998776653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=92.15  E-value=0.16  Score=60.00  Aligned_cols=135  Identities=8%  Similarity=-0.050  Sum_probs=79.2

Q ss_pred             eCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeC-C-CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCC
Q 004203           88 VEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHG-D-HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN  161 (768)
Q Consensus        88 s~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~-D-gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~d  161 (768)
                      ...+.|.+.+.....    +.........++++|++.+|+.+.. . +.|.+++++.......+...-...+.|+|+|++
T Consensus       472 ~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~  551 (699)
T 1n7d_A          472 SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS  551 (699)
T ss_dssp             TTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTT
T ss_pred             ccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccC
Confidence            345667777776442    1122244678899997666665543 2 788888876443323322233456779999955


Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecC---CCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcc
Q 004203          162 PTIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVAS--GHKLYIWRYNMREE  224 (768)
Q Consensus       162 g~lLaSgS~DgtVrLWDl~sg~~i~~l~h---~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~  224 (768)
                      +.++++-...+.|..+|+........+..   ......+++..  ..|+...  .+.|..+|..+++.
T Consensus       552 ~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          552 GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             CCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEE
T ss_pred             CEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCc
Confidence            66666666678999999975433322221   12233455543  3454444  34488888766654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.92  E-value=20  Score=41.78  Aligned_cols=168  Identities=10%  Similarity=-0.001  Sum_probs=104.2

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCCCCC----CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe----
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCPLSP----PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH----  146 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~g----H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~----  146 (768)
                      ....+....|+.+..+| +..+|..+.++..    ....|.++... +| .|..++.+ -|.+||.++++.. .+.    
T Consensus        67 ~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~  141 (758)
T 3ott_A           67 CGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRN  141 (758)
T ss_dssp             EEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEE-EECHHHH
T ss_pred             EEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCC
Confidence            33446677888887665 6788887764432    23357777553 55 45556665 6889998876643 331    


Q ss_pred             -cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cC-----CCCeEEEEEcCCCCEEEEEECCeEEEEEc
Q 004203          147 -GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DF-----YRPIASIAFHASGELLAVASGHKLYIWRY  219 (768)
Q Consensus       147 -gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h-----~~~V~svafSPDG~~LatgSdd~I~IWDl  219 (768)
                       -....|.++.... ++.+.+ +..+ -|..+|..+++..... ..     ...|.++....++..|-.++++++..+|.
T Consensus       142 ~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~  218 (758)
T 3ott_A          142 GLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFP  218 (758)
T ss_dssp             CCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEET
T ss_pred             CcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcC
Confidence             1134577777766 666555 4444 5888898876543321 11     22478888888777655566667999998


Q ss_pred             CCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .+.+... ...+  ....|.++....+|...+.+
T Consensus       219 ~~~~~~~-~~~l--~~~~i~~i~~d~~g~lWigT  249 (758)
T 3ott_A          219 STGQIKQ-TEAF--HNNSIKSLALDGNGDLLAGT  249 (758)
T ss_dssp             TTTEEEE-EEEE--EEEEEEEEEECTTCCEEEEE
T ss_pred             CCCeEEe-ccCC--CCCeEEEEEEcCCCCEEEEe
Confidence            7654322 1111  23458889888888866655

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.08  E-value=10  Score=38.45  Aligned_cols=128  Identities=16%  Similarity=0.124  Sum_probs=70.2

Q ss_pred             CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeCCCCeEEEE--EecCCCCcEEEE
Q 004203           91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQTGSCLKV--LHGHRRTPWVVR  156 (768)
Q Consensus        91 gsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~D------gtVrVWDl~tg~~l~~--l~gH~g~V~sVa  156 (768)
                      ..+..+|..+.+      +......-..+.+  ++++++.|+.+      ..+.+||..+.+-...  +........ +.
T Consensus        70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~  146 (306)
T 3ii7_A           70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHG-MV  146 (306)
T ss_dssp             CEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCE-EE
T ss_pred             ceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeE-EE
Confidence            567888887652      2222222223333  57777777754      4699999988753322  111111112 22


Q ss_pred             EccCCCCEEEEEeC---------CCeEEEEECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEEC------CeEEEEEc
Q 004203          157 FHPLNPTIIASGSL---------DHEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASG------HKLYIWRY  219 (768)
Q Consensus       157 fSP~dg~lLaSgS~---------DgtVrLWDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgSd------d~I~IWDl  219 (768)
                      . - ++++++.|+.         -..+.+||+.+.+-...-.  ....-.+++.. ++++++.|+.      +.+.+||+
T Consensus       147 ~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~  223 (306)
T 3ii7_A          147 E-A-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDI  223 (306)
T ss_dssp             E-E-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEET
T ss_pred             E-E-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeC
Confidence            2 2 5677777653         3458999999876444322  22212222222 5666666652      23899999


Q ss_pred             CCCcc
Q 004203          220 NMREE  224 (768)
Q Consensus       220 ~t~~~  224 (768)
                      .+.+-
T Consensus       224 ~~~~W  228 (306)
T 3ii7_A          224 KLNEW  228 (306)
T ss_dssp             TTTEE
T ss_pred             CCCcE
Confidence            88754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.07  E-value=1.4  Score=45.06  Aligned_cols=129  Identities=15%  Similarity=0.118  Sum_probs=77.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCe------EEEEEecC--CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Q 004203          119 GKTLASTHGDHTVKIIDCQTGS------CLKVLHGH--RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF  190 (768)
Q Consensus       119 G~~LaSgS~DgtVrVWDl~tg~------~l~~l~gH--~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h  190 (768)
                      ...|+...+| +|+.=...++.      ....+ +.  =..+..++|+| ++.+.+.  .++.++-.+..+.+....+..
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccccc
Confidence            4456666677 66655444433      12222 22  24678999999 8886666  677777777655322211111


Q ss_pred             CC--------CeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc---CCeEeecC-CCCeEEEEEccCCCeEEEE
Q 004203          191 YR--------PIASIAFHASGELLAVASGHKLYIWRYNMREETS---SPRIVLRT-RRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       191 ~~--------~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~---~~~~l~~h-~~~V~sVaFSPDG~~LlaS  253 (768)
                      ..        ....+.|+|+|.+.++ +++.|+.++-.+.....   .-.++..+ =..+..|.|.|+|...+++
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             ccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            11        2578999999998887 88889888754332211   01112111 2468999999999966555

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=90.99  E-value=10  Score=42.36  Aligned_cols=130  Identities=14%  Similarity=0.168  Sum_probs=79.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEecC----CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc----------
Q 004203          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----------  183 (768)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~----------  183 (768)
                      +|..++.+- +..||.-++..+..-+.++-.    -..|..+..+| +|++||..+ +.+|.|-.+..+.          
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence            455554443 356777676643333344332    23688899999 999988875 4579998887331          


Q ss_pred             --EEEEe--c-----CCCCeEEEEEcCCC---CEEEEEE-CCeEEEEEcCCCccccCCeEee---------cCCCCeEEE
Q 004203          184 --CIGSR--D-----FYRPIASIAFHASG---ELLAVAS-GHKLYIWRYNMREETSSPRIVL---------RTRRSLRAV  241 (768)
Q Consensus       184 --~i~~l--~-----h~~~V~svafSPDG---~~LatgS-dd~I~IWDl~t~~~~~~~~~l~---------~h~~~V~sV  241 (768)
                        ..+.+  +     ...+|..+.|||-+   ..|++-. ++.|++||+.....  .|..+.         .....|.++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~--~P~~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE--KPIVLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS--CCEEESCCCSEEESCSSCCCEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC--CCcchhccccccCCCcccceEEEE
Confidence              11122  1     24689999999954   4566666 55699999987332  222111         112567788


Q ss_pred             EEccCCCeEEE
Q 004203          242 HFHPHAAPLLL  252 (768)
Q Consensus       242 aFSPDG~~Lla  252 (768)
                      +|.+++-.|.+
T Consensus       186 ~Fg~~~lTLYv  196 (452)
T 3pbp_A          186 EFSKDGLTLYC  196 (452)
T ss_dssp             EECTTSSCEEE
T ss_pred             EEcCCCcEEEE
Confidence            88886654443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.98  E-value=2.5  Score=45.03  Aligned_cols=102  Identities=13%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE--Eec----CCCCeEEEEEcCC---CCEEEEEEC-------C
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRD----FYRPIASIAFHAS---GELLAVASG-------H  212 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~--~l~----h~~~V~svafSPD---G~~LatgSd-------d  212 (768)
                      -...+.++|.| ++++++ +..++.|++++  +++...  .+.    .......++|+|+   +..|+++..       +
T Consensus        30 l~~P~~ia~~p-dG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           30 LEVPWALAFLP-DGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CSCEEEEEECT-TSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCceEEEEcC-CCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            34577899999 887555 46679999998  444321  111    2346789999998   666655542       4


Q ss_pred             eEEEEEcCCCccccCCeE---ee---cCCCCeEEEEEccCCCeEEEEE
Q 004203          213 KLYIWRYNMREETSSPRI---VL---RTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       213 ~I~IWDl~t~~~~~~~~~---l~---~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      .|..|++...........   +.   ........++|.|||..+++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            588888874321110011   11   1112346899999997555443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.76  E-value=2.6  Score=45.55  Aligned_cols=112  Identities=13%  Similarity=0.180  Sum_probs=68.3

Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--e-----cCCCCeEEEEEcCC---CCEEEEE-E-
Q 004203          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--R-----DFYRPIASIAFHAS---GELLAVA-S-  210 (768)
Q Consensus       143 ~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l-----~h~~~V~svafSPD---G~~Latg-S-  210 (768)
                      ..+...-...+.|+|.| ++.++++-...|.|++++..+++....  +     ........++|+||   +..|++. + 
T Consensus        25 ~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           25 RTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             EEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            34444445688999999 888777655589999998766654322  2     12456789999996   4455443 2 


Q ss_pred             --CCeEEEEEcCCCc----cccCCeEee-----cCCCCeEEEEEccCCCeEEEEEe
Q 004203          211 --GHKLYIWRYNMRE----ETSSPRIVL-----RTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       211 --dd~I~IWDl~t~~----~~~~~~~l~-----~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                        +++|..|.+....    .......+.     .....-..|.|.|||..+++.+.
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence              3447778776521    111111111     11224567999999986666554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.38  E-value=6  Score=42.10  Aligned_cols=142  Identities=14%  Similarity=0.087  Sum_probs=75.9

Q ss_pred             EEEEECCCCCEEEEEeC-------------CCeEEEEeCCCC-------------eEEEEEecCCCCcEEEEEccCCCCE
Q 004203          111 IAAAFSPDGKTLASTHG-------------DHTVKIIDCQTG-------------SCLKVLHGHRRTPWVVRFHPLNPTI  164 (768)
Q Consensus       111 tslafSPDG~~LaSgS~-------------DgtVrVWDl~tg-------------~~l~~l~gH~g~V~sVafSP~dg~l  164 (768)
                      ..++|.|||.+.++.+.             .+.|..+|.+..             .....-.++.. .+.++|+|.++++
T Consensus       133 ~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rn-p~gl~~d~~~g~l  211 (353)
T 2g8s_A          133 GRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRN-PQGMAMNPWSNAL  211 (353)
T ss_dssp             CCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSE-EEEEEEETTTTEE
T ss_pred             ccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcC-ccceEEECCCCCE
Confidence            57999999965554433             257888887542             11111234543 6779999955555


Q ss_pred             EEEEe-CCCeEEEEECCCCc-------------------------------EEEEecCCCCeEEEEEcC-------CCCE
Q 004203          165 IASGS-LDHEVRLWNASTAE-------------------------------CIGSRDFYRPIASIAFHA-------SGEL  205 (768)
Q Consensus       165 LaSgS-~DgtVrLWDl~sg~-------------------------------~i~~l~h~~~V~svafSP-------DG~~  205 (768)
                      +++-. .++.=.|.-+..+.                               +...+.+......++|..       +|++
T Consensus       212 ~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l  291 (353)
T 2g8s_A          212 WLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKL  291 (353)
T ss_dssp             EEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEE
T ss_pred             EEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcE
Confidence            54422 12111222222211                               111223334566778864       4555


Q ss_pred             EEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          206 LAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       206 LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ++..- .++|...++..++.......+......+..+++.|||..++++
T Consensus       292 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          292 FIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             EEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             EEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            44433 4458888887543222111111234579999999999965544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=89.58  E-value=3.5  Score=44.08  Aligned_cols=103  Identities=11%  Similarity=0.085  Sum_probs=61.3

Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEec----CCCCeEEEEEcCC---CCEEEEEE-C--------
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD----FYRPIASIAFHAS---GELLAVAS-G--------  211 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~l~----h~~~V~svafSPD---G~~LatgS-d--------  211 (768)
                      -...+.++|.| ++++++ +..++.|+++| .+++ .+..+.    .......++|+|+   +..|+++. .        
T Consensus        28 l~~P~~ia~~p-dG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLG-GGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEE-TTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcC-CCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            34578899999 777544 56679999997 4554 222111    2346789999998   55555443 2        


Q ss_pred             CeEEEEEcCCCc--cc--cCCeE-ee-cCCCCeEEEEEccCCCeEEEEE
Q 004203          212 HKLYIWRYNMRE--ET--SSPRI-VL-RTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       212 d~I~IWDl~t~~--~~--~~~~~-l~-~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      +.|..|++....  ..  ..... +. ........+.|.|||..+++.+
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            458888876541  10  00001 11 1112356799999998555543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.18  E-value=5  Score=44.59  Aligned_cols=106  Identities=11%  Similarity=0.153  Sum_probs=63.9

Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--ec-------CCCCeEEEEEcCC---CCEEEEEEC-----
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD-------FYRPIASIAFHAS---GELLAVASG-----  211 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~-------h~~~V~svafSPD---G~~LatgSd-----  211 (768)
                      -...+.|+|.| +++++++-...+.|++++..+++....  +.       .......|+|+||   +..|++...     
T Consensus        26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            34578999999 888776644445799988766654322  21       1345679999996   555555441     


Q ss_pred             ---------CeEEEEEcCCCcc-ccCCeEee-----cCCCCeEEEEEccCCCeEEEEEe
Q 004203          212 ---------HKLYIWRYNMREE-TSSPRIVL-----RTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       212 ---------d~I~IWDl~t~~~-~~~~~~l~-----~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                               ..|..|++..... ......+.     ........|.|.|||..+++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                     2377777654311 00011111     11245789999999986666554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=88.44  E-value=19  Score=36.22  Aligned_cols=128  Identities=13%  Similarity=0.056  Sum_probs=69.9

Q ss_pred             CeEEEEeCCCCC---C------CCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCeEEE--EEecCCCCcEE
Q 004203           91 ESLHHLRPKYCP---L------SPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLK--VLHGHRRTPWV  154 (768)
Q Consensus        91 gsIrlWd~~t~~---L------~gH~~~VtslafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~--~l~gH~g~V~s  154 (768)
                      ..+.++|..+.+   .      ......-..+.+  +++.++.|+.+     ..+.+||+.+.+-..  .+.........
T Consensus        78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  155 (301)
T 2vpj_A           78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGL  155 (301)
T ss_dssp             CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred             ceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceE
Confidence            358888877654   2      111112222333  56777776643     468999998875332  22211111222


Q ss_pred             EEEccCCCCEEEEEeCC-----CeEEEEECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEEC------CeEEEEEcCC
Q 004203          155 VRFHPLNPTIIASGSLD-----HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASG------HKLYIWRYNM  221 (768)
Q Consensus       155 VafSP~dg~lLaSgS~D-----gtVrLWDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgSd------d~I~IWDl~t  221 (768)
                      +.  - ++++++.|+.+     ..+.+||+.+.+-...-.  ....-.+++. -++++++.|+.      +.+.+||+.+
T Consensus       156 ~~--~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          156 VV--A-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             EE--E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             EE--E-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCC
Confidence            22  2 57788887754     469999998876544322  1111112222 25666677652      2399999987


Q ss_pred             Ccc
Q 004203          222 REE  224 (768)
Q Consensus       222 ~~~  224 (768)
                      .+-
T Consensus       232 ~~W  234 (301)
T 2vpj_A          232 DSW  234 (301)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=87.06  E-value=14  Score=37.47  Aligned_cols=131  Identities=11%  Similarity=0.040  Sum_probs=70.5

Q ss_pred             CCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEeCCCCeEEEEEecCCCCcEEEEEcc
Q 004203           90 AESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP  159 (768)
Q Consensus        90 DgsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~D----gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP  159 (768)
                      ...+..+|..+.+      +......-..+.+  +++.++.|+.+    ..+.+||..+.+-...-.-...........-
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  100 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA  100 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence            3456777776541      2221222223332  56677777754    6799999988754332211111111111122


Q ss_pred             CCCCEEEEEeCC------CeEEEEECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEE----------CCeEEEEEcCC
Q 004203          160 LNPTIIASGSLD------HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVAS----------GHKLYIWRYNM  221 (768)
Q Consensus       160 ~dg~lLaSgS~D------gtVrLWDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgS----------dd~I~IWDl~t  221 (768)
                       ++++++.|+.+      ..+.+||..+.+-...-.  ....-.+++. -++++++.|+          .+.+.+||..+
T Consensus       101 -~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 -EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             -TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             -CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence             67788887765      469999999876544321  1211122222 2566666665          22388999988


Q ss_pred             Ccc
Q 004203          222 REE  224 (768)
Q Consensus       222 ~~~  224 (768)
                      .+-
T Consensus       179 ~~W  181 (306)
T 3ii7_A          179 ETW  181 (306)
T ss_dssp             TEE
T ss_pred             CeE
Confidence            754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=84.42  E-value=66  Score=37.25  Aligned_cols=166  Identities=13%  Similarity=0.015  Sum_probs=99.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC--------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC----
Q 004203           81 RRGLASWVEAESLHHLRPKYCPLS--------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----  148 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L~--------gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----  148 (768)
                      ...|+.+..+ -+..++..+.++.        -....|.++....+|.+.+ ++.+ -|..||..+++... +...    
T Consensus       112 ~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~-~~~~~~~~  187 (758)
T 3ott_A          112 GDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEG-IPLPVHSS  187 (758)
T ss_dssp             TTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEE-ECCCCCTT
T ss_pred             CCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEE-ecCCCccc
Confidence            4567767666 5777887655332        1234688998888887665 4444 47888987766432 2211    


Q ss_pred             --CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccc
Q 004203          149 --RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHKLYIWRYNMREET  225 (768)
Q Consensus       149 --~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~  225 (768)
                        ...|.++.... ++..|..|.. +-|..+|..+++...... ....|.++....+|.+.+. +++++.++|..+....
T Consensus       188 ~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~Gl~~~~~~~~~~~  264 (758)
T 3ott_A          188 QSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDNGLYVYHNDTTPLQ  264 (758)
T ss_dssp             CSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETTEEEEECCTTSCCE
T ss_pred             cccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCCceeEEecCCCcEE
Confidence              12377777766 5554444443 458889988775433211 2335788888888876554 4678999987665321


Q ss_pred             cCCeEe----ecCCCCeEEEEEccCCCeEEEE
Q 004203          226 SSPRIV----LRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       226 ~~~~~l----~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ......    .-....|.++....+|...+.+
T Consensus       265 ~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT  296 (758)
T 3ott_A          265 HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT  296 (758)
T ss_dssp             EECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred             EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence            100000    0013468999999888866554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=83.63  E-value=23  Score=35.66  Aligned_cols=128  Identities=18%  Similarity=0.164  Sum_probs=69.2

Q ss_pred             CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCeEEEE--EecCCCCcEEEEE
Q 004203           91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKV--LHGHRRTPWVVRF  157 (768)
Q Consensus        91 gsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~~--l~gH~g~V~sVaf  157 (768)
                      ..+.++|..+.+      +......-.++.+  +++.++.|+.+     ..+.+||+.+.+-...  +.........+.+
T Consensus       128 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  205 (301)
T 2vpj_A          128 TSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL  205 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             ceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE
Confidence            357888887652      2211122222333  67777777654     4699999988753322  1111111122222


Q ss_pred             ccCCCCEEEEEeCC-----CeEEEEECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEEC------CeEEEEEcCCCcc
Q 004203          158 HPLNPTIIASGSLD-----HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASG------HKLYIWRYNMREE  224 (768)
Q Consensus       158 SP~dg~lLaSgS~D-----gtVrLWDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgSd------d~I~IWDl~t~~~  224 (768)
                         ++.+++.|+.+     ..+.+||+.+.+-...-.  .......++. -++++++.|+.      +.+.+||..+.+-
T Consensus       206 ---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          206 ---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             ---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             ---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence               56788887764     469999999876544322  1111112222 26666666652      1278888877653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=82.96  E-value=33  Score=34.55  Aligned_cols=128  Identities=18%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCeEEEE--EecCCCCcEEEEE
Q 004203           91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKV--LHGHRRTPWVVRF  157 (768)
Q Consensus        91 gsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~~--l~gH~g~V~sVaf  157 (768)
                      ..+..+|..+.+      +......-..+.+  +++.++.|+.+     ..+.+||+.+.+-...  +....... .+..
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~  153 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV  153 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE
T ss_pred             cceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE
Confidence            357888887652      2222222223333  57777777755     3588999887753322  11111111 2222


Q ss_pred             ccCCCCEEEEEeCC-------CeEEEEECCCCcEEEEe--cCCCCeEEEEEcCCCCEEEEEEC------CeEEEEEcCCC
Q 004203          158 HPLNPTIIASGSLD-------HEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASG------HKLYIWRYNMR  222 (768)
Q Consensus       158 SP~dg~lLaSgS~D-------gtVrLWDl~sg~~i~~l--~h~~~V~svafSPDG~~LatgSd------d~I~IWDl~t~  222 (768)
                       - ++++++.|+.+       ..+.+||+.+.+-...-  .....-.+++. -++++++.|+.      +.+.+||..+.
T Consensus       154 -~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          154 -V-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             -E-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             -E-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence             2 56777776542       35899999887654432  22211122222 25677777652      23899998876


Q ss_pred             cc
Q 004203          223 EE  224 (768)
Q Consensus       223 ~~  224 (768)
                      +-
T Consensus       231 ~W  232 (302)
T 2xn4_A          231 AW  232 (302)
T ss_dssp             EE
T ss_pred             CE
Confidence            54

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=82.79  E-value=33  Score=34.53  Aligned_cols=127  Identities=17%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             eEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeC-------CCeEEEEeCCCCeEEEE--EecCCCCcEEEE
Q 004203           92 SLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHG-------DHTVKIIDCQTGSCLKV--LHGHRRTPWVVR  156 (768)
Q Consensus        92 sIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~-------DgtVrVWDl~tg~~l~~--l~gH~g~V~sVa  156 (768)
                      .+..+|..+.+      +.........+.+  +++.++.|+.       ...+.+||+.+.+-...  +.........+.
T Consensus       125 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  202 (302)
T 2xn4_A          125 SVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV  202 (302)
T ss_dssp             EEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             eEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE
Confidence            47788877652      2222222222332  5666666654       24589999988753322  111111122222


Q ss_pred             EccCCCCEEEEEeCC-----CeEEEEECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEECC------eEEEEEcCCCc
Q 004203          157 FHPLNPTIIASGSLD-----HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASGH------KLYIWRYNMRE  223 (768)
Q Consensus       157 fSP~dg~lLaSgS~D-----gtVrLWDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgSdd------~I~IWDl~t~~  223 (768)
                      +   ++.+++.|+.+     ..+.+||+.+.+-...-.  ....-..++. -++++++.|+.+      .+.+||..+.+
T Consensus       203 ~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          203 L---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             E---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             E---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            2   57788887764     369999998876544322  1111112222 266777776521      28999988765


Q ss_pred             c
Q 004203          224 E  224 (768)
Q Consensus       224 ~  224 (768)
                      -
T Consensus       279 W  279 (302)
T 2xn4_A          279 W  279 (302)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=82.27  E-value=25  Score=35.79  Aligned_cols=128  Identities=15%  Similarity=0.120  Sum_probs=69.5

Q ss_pred             CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCeEEEE--EecCCCCcEEEEE
Q 004203           91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKV--LHGHRRTPWVVRF  157 (768)
Q Consensus        91 gsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~~--l~gH~g~V~sVaf  157 (768)
                      ..+..+|..+.+      +......-..+.+  ++++++.|+.+     ..+.+||..+.+-...  +.........+.+
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  167 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  167 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence            357888887652      2222222233333  56777776643     4689999987653222  1111111222222


Q ss_pred             ccCCCCEEEEEeCC-----CeEEEEECCCCcEEEEe--cCCCCeEEEEEcCCCCEEEEEEC------CeEEEEEcCCCcc
Q 004203          158 HPLNPTIIASGSLD-----HEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASG------HKLYIWRYNMREE  224 (768)
Q Consensus       158 SP~dg~lLaSgS~D-----gtVrLWDl~sg~~i~~l--~h~~~V~svafSPDG~~LatgSd------d~I~IWDl~t~~~  224 (768)
                         ++.+++.|+.+     ..+.+||+.+.+-...-  .......+++.. ++++++.|+.      +.+.+||+.+.+-
T Consensus       168 ---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          168 ---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             ---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             ---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence               56777777654     46999999887544332  111111222222 6677777652      2399999987754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.07  E-value=39  Score=37.59  Aligned_cols=102  Identities=21%  Similarity=0.192  Sum_probs=59.1

Q ss_pred             eEEEEECCCCC-EEEEEeCCCeEEEEeCCCCe---EEEEEe-----c----CCCCcEEEEEccC---CCCEEEEEeC--C
Q 004203          110 TIAAAFSPDGK-TLASTHGDHTVKIIDCQTGS---CLKVLH-----G----HRRTPWVVRFHPL---NPTIIASGSL--D  171 (768)
Q Consensus       110 VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~---~l~~l~-----g----H~g~V~sVafSP~---dg~lLaSgS~--D  171 (768)
                      -..|+|.|||+ .|+++...|.|++++.+...   .+..+.     +    ..+....|+|+|+   ++.+.++-+.  +
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~   95 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE   95 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence            57899999996 56667788999999754321   222221     1    1345778999993   2455444332  1


Q ss_pred             ----------CeEEEEECCCC----------cEEEEec---CCCCeEEEEEcCCCCEEEEEEC
Q 004203          172 ----------HEVRLWNASTA----------ECIGSRD---FYRPIASIAFHASGELLAVASG  211 (768)
Q Consensus       172 ----------gtVrLWDl~sg----------~~i~~l~---h~~~V~svafSPDG~~LatgSd  211 (768)
                                ..|.-|.+..+          +.+..+.   ....-..|+|.|||++.++.++
T Consensus        96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence                      13444555421          2222221   2234678999999986666553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=81.80  E-value=29  Score=35.31  Aligned_cols=130  Identities=11%  Similarity=0.020  Sum_probs=69.3

Q ss_pred             CeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCCeEEEE--EecCCCCc
Q 004203           91 ESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHG-----------DHTVKIIDCQTGSCLKV--LHGHRRTP  152 (768)
Q Consensus        91 gsIrlWd~~t~~-----L~gH~~~VtslafSPDG~~LaSgS~-----------DgtVrVWDl~tg~~l~~--l~gH~g~V  152 (768)
                      ..+..+|..+.+     +..............+++.++.|+.           ...+.+||..+.+-...  +.......
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~   92 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF   92 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence            456777776652     2222222333333457788888873           12388899988753221  11111111


Q ss_pred             EEEEEccCCCCEEEEEeCC--------CeEEEEECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEEC-------CeEE
Q 004203          153 WVVRFHPLNPTIIASGSLD--------HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASG-------HKLY  215 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~D--------gtVrLWDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgSd-------d~I~  215 (768)
                      ..+.+   ++.+++.|+.+        ..+.+||..+.+-...-.  ....-.+++. -++++++.|+.       +.+.
T Consensus        93 ~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~  168 (315)
T 4asc_A           93 GLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMC  168 (315)
T ss_dssp             EEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEE
T ss_pred             eEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEE
Confidence            11222   56777777642        369999998875433321  2211122222 45666666653       2399


Q ss_pred             EEEcCCCcc
Q 004203          216 IWRYNMREE  224 (768)
Q Consensus       216 IWDl~t~~~  224 (768)
                      +||..+.+-
T Consensus       169 ~yd~~~~~W  177 (315)
T 4asc_A          169 VYDPKKFEW  177 (315)
T ss_dssp             EEETTTTEE
T ss_pred             EEeCCCCeE
Confidence            999887754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=81.43  E-value=25  Score=39.48  Aligned_cols=119  Identities=14%  Similarity=0.163  Sum_probs=84.8

Q ss_pred             CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEE
Q 004203          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA  207 (768)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~La  207 (768)
                      +..|.|.|+.++..+..-.-   ...+.-.+| ..+++|-=. ..++.|+|+++.+.++.+.....|.--.|-.+ +.|+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l~  120 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVA  120 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC---CCSEEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEEE
T ss_pred             CCeEEEEECCCCCcceeccc---ccceeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeEE
Confidence            34788889887654322111   122456788 667666654 67999999999999999887888888888754 4677


Q ss_pred             EEECCeEEEEEcCCCccccCCeEeec-C----CCCeEEEEEccCCCeEEEEEe
Q 004203          208 VASGHKLYIWRYNMREETSSPRIVLR-T----RRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       208 tgSdd~I~IWDl~t~~~~~~~~~l~~-h----~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..++..|+-|++....   .|.++.. |    ...|-.-..+++.++++..+-
T Consensus       121 lVT~taVyHWsi~~~s---~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI  170 (494)
T 1bpo_A          121 LVTDNAVYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI  170 (494)
T ss_dssp             EECSSEEEEEESSSSC---CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEE
T ss_pred             EEcCCeeEEecccCCC---CchhheecchhcccceEEEEEECCCCCeEEEEee
Confidence            7788889999997633   2444443 2    456888888999999887664

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=81.16  E-value=40  Score=34.30  Aligned_cols=103  Identities=9%  Similarity=-0.010  Sum_probs=57.5

Q ss_pred             CCCEEEEEeCC--------CeEEEEeCCCCeEEEE--EecCCCCcEEEEEccCCCCEEEEEeC-C-----CeEEEEECCC
Q 004203          118 DGKTLASTHGD--------HTVKIIDCQTGSCLKV--LHGHRRTPWVVRFHPLNPTIIASGSL-D-----HEVRLWNAST  181 (768)
Q Consensus       118 DG~~LaSgS~D--------gtVrVWDl~tg~~l~~--l~gH~g~V~sVafSP~dg~lLaSgS~-D-----gtVrLWDl~s  181 (768)
                      +++.++.|+.+        ..+.+||..+.+-...  +....... +++. - ++++++.|+. +     ..+.+||..+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-H-MDLVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-E-CCEEEEEeCCCCCCcccceEEEEeCCC
Confidence            56666666632        4699999988753221  11111112 2222 2 5678888776 2     3699999988


Q ss_pred             CcEEEEec--CCCCeEEEEEcCCCCEEEEEE-CC-----eEEEEEcCCCcc
Q 004203          182 AECIGSRD--FYRPIASIAFHASGELLAVAS-GH-----KLYIWRYNMREE  224 (768)
Q Consensus       182 g~~i~~l~--h~~~V~svafSPDG~~LatgS-dd-----~I~IWDl~t~~~  224 (768)
                      .+-...-.  ......+++. -++++++.|+ ++     .+.+||..+.+-
T Consensus       175 ~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          175 FEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKW  224 (315)
T ss_dssp             TEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred             CeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeE
Confidence            75443322  1111122222 2667777776 22     388899887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	768
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.7 bits (187), Expect = 9e-16
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 92  SLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151
            +                +        G  L S   D T+K+ D  TG CL  L GH   
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS 210
              V FH      I S + D  +R+W+     C+ +       + S+ FH +   +   S
Sbjct: 250 VRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308

Query: 211 G-HKLYIW 217
               + +W
Sbjct: 309 VDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 5e-12
 Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 27/176 (15%)

Query: 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160
              +           + DG  +AS   D TV++    T  C   L  HR     + + P 
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 161 NP-------------------TIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFH 200
           +                      + SGS D  +++W+ ST  C+ +       +  + FH
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 201 ASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTA 254
           + G+ +   +    L +W Y    +       L      + ++ FH   AP ++T 
Sbjct: 257 SGGKFILSCADDKTLRVWDY----KNKRCMKTLNAHEHFVTSLDFHKT-APYVVTG 307

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 11/158 (6%)

Query: 105 PPPRSTI--------AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156
           PP +  +           F P    + S   D T+K+ D +TG   + L GH  +   + 
Sbjct: 7   PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 66

Query: 157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI 216
           F      + +  +                        ++S++   +G+ +  AS  K   
Sbjct: 67  FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK--- 123

Query: 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254
                  +T          R    +        L+ + 
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
                    +     +  + +  P+G  + S   D T+K+ + QTG C+K   GHR    
Sbjct: 88  FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 147

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGH 212
           +VR +  + T+IAS S D  VR+W  +T EC    R+    +  I++       +++   
Sbjct: 148 MVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.1 bits (188), Expect = 1e-15
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
                             + +FS  G+ L + + D    + D        VL GH     
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWN 178
            +     +   +A+GS D  +++WN
Sbjct: 317 CLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.6 bits (179), Expect = 1e-14
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV--VRFHPLNPTIIASGS 169
           A  F P+G   A+   D T ++ D +    L           +  V F   +  ++ +G 
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGY 289

Query: 170 LDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIW 217
            D    +W+A  A+  G        ++ +     G  +A  S    L IW
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 6e-13
 Identities = 28/141 (19%), Positives = 43/141 (30%), Gaps = 11/141 (7%)

Query: 119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL-- 176
            +   S   D + K+ D + G C +   GH      + F P N    A+GS D   RL  
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFD 254

Query: 177 -WNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT 234
                        +    I S++F  SG LL          +W        +    VL  
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA----LKADRAGVLAG 310

Query: 235 -RRSLRAVHFHPHAAPLLLTA 254
               +  +         + T 
Sbjct: 311 HDNRVSCLGVTDD-GMAVATG 330

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 12/80 (15%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAF 199
             + L GH    + + +   +  ++ S S D ++ +W++ T   + +       + + A+
Sbjct: 47  TRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 200 HASGELLAVASGHKLYIWRY 219
             SG  +A      +     
Sbjct: 106 APSGNYVACGGLDNICSIYN 125

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 9/53 (16%), Positives = 17/53 (32%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
           A  +  D + L S   D  + I D  T + +  +           + P    +
Sbjct: 60  AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 93  LHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152
           +  +    C  +     ++ +        L S + D TVKI D +TG CL+ L G  +  
Sbjct: 201 VWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 260

Query: 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECI------GSRDFYRPIASIAFHASGELL 206
             V     N   + + S D  V+LW+  T E I       S      +  I    +  + 
Sbjct: 261 SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 320

Query: 207 AVASGH-----KLYIWRYN 220
           AV S +     KL +  ++
Sbjct: 321 AVGSRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 9e-10
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 5/163 (3%)

Query: 85  ASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV 144
            S      +  +    C                DG+ + S   D  VK+ D +T +CL  
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172

Query: 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE 204
           L GH    + ++F   +   + SGSLD  +R+W+  T  CI +   ++ + S        
Sbjct: 173 LQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDN 228

Query: 205 LLAVA-SGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246
           +L    +   + IW     +   + +   + + ++  + F+ +
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 7e-09
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
              +       G  + S   D+T+K+    TG CL+ L GH    W  +   
Sbjct: 16  DDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 135 DCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRP 193
                   KVL GH                I SGS D+ +++W+A T +C+ +       
Sbjct: 2   RRGELKSPKVLKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 194 IASIAFH 200
           + S    
Sbjct: 60  VWSSQMR 66

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 92  SLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-----H 146
            +   +       P    +       +   + ++  D TVK+ D +TG  ++ L      
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 147 GHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWN 178
           G     W +R       + A GS +     ++ + +
Sbjct: 303 GSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLD 337

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.4 bits (160), Expect = 3e-12
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGS 169
             A++ D   +A    +H V I +        +  L  H      V + P +   I +  
Sbjct: 12  CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCG 70

Query: 170 LDHEVRLWN 178
            D    +W 
Sbjct: 71  TDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASG 211
             ++  + T IA    +HEV ++  S  + +   +       +  + +      +     
Sbjct: 13  HAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71

Query: 212 -HKLYIWRYNM 221
               Y+W    
Sbjct: 72  DRNAYVWTLKG 82

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 9/77 (11%)

Query: 116 SPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG------HRRTPWVVRFHP---LNPTIIA 166
            P   +          + +D +  S      G      H+ +   +          +   
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 345

Query: 167 SGSLDHEVRLWNASTAE 183
           +  +D  + +W+  + E
Sbjct: 346 TTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 8/124 (6%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
            F  +   +A+ H    V +    + +      G    P       L        +LD +
Sbjct: 250 TFITESSLVAAGHDCFPV-LFTYDSAAGKLSFGGRLDVPKQSSQRGLTA-RERFQNLDKK 307

Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGE--LLAVASG---HKLYIWRYNMREETSSP 228
                ++ A           ++ I+  + G+       +      + IW     E     
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 367

Query: 229 -RIV 231
            +IV
Sbjct: 368 LKIV 371

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.7 bits (162), Expect = 4e-12
 Identities = 35/280 (12%), Positives = 63/280 (22%), Gaps = 28/280 (10%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSC-----LKVLHGHRRTPWVVRFHPLNPTIIASG 168
             S  G+ L     D  V +ID           +K+    R           +   IA  
Sbjct: 68  RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA 127

Query: 169 SLDHEVRLWNASTAECIGSRDFYRPI------------ASIAFHASGELLAVASGHKLYI 216
               +  + +  T E    +                  A+I          V       I
Sbjct: 128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187

Query: 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWR 276
              +  +  +     +   R L             +TA                      
Sbjct: 188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHR-YFITAANARNKLVVIDTKEGKLVAIED 246

Query: 277 YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSL 336
                       +  HP      P+     +    V         H ++   A +   S 
Sbjct: 247 TGGQTPHPGRGANFVHPTFG---PVWATSHMGDDSVALIGTDPEGHPDN---AWKILDSF 300

Query: 337 RSSSSVRLLTYSTPSGQYELVLSPI----ASNRSSPMPDG 372
            +     L   + P+ QY  V + +      + S  + D 
Sbjct: 301 PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 340

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 15/132 (11%), Positives = 30/132 (22%), Gaps = 15/132 (11%)

Query: 102 PLSPPPRSTIAAAFSPDGKTL--ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
                P   +      D + L   +      + +ID  T     VL        + R   
Sbjct: 16  APEDRPTQQM---NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSA 71

Query: 160 LNPTIIASGSLDHEVRLWNASTAECIGSRDF------YRPIASIAFHASGELLAVAS--G 211
            +   +     D +V + +    E     +            S       +     +   
Sbjct: 72  -SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP 130

Query: 212 HKLYIWRYNMRE 223
            +  I      E
Sbjct: 131 PQYVIMDGETLE 142

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 6e-12
 Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 21/174 (12%)

Query: 66  CSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLAST 125
             G    I     D    +        +  L  +    +    S  +  F+ DG+++ S 
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWV------------VRFHPLNPTIIASGSLDHE 173
             D +VK+ + Q  +                          V     N   I SGS D  
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRG 331

Query: 174 VRLWNASTAECIGS-RDFYRPIASIA------FHASGELLAVASG-HKLYIWRY 219
           V  W+  +   +   +     + S+A            + A  SG  K  IW+Y
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 8/139 (5%)

Query: 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNAST-----AECIGSRDFYRPIASIAFHASGEL 205
            P+++     +         +    L+N +       E   S D    +  + F   GE 
Sbjct: 17  PPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY 76

Query: 206 LAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESS 265
           LA        ++R +     +         +    ++     +       +  +  S   
Sbjct: 77  LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS---DLYIRSVCFSPDG 133

Query: 266 LTLATSPGYWRYPPPVICM 284
             LAT           I  
Sbjct: 134 KFLATGAEDRLIRIWDIEN 152

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 6e-04
 Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 25/110 (22%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
              FS DG+ LA+   + T ++     GS +  L             P N    +S S D
Sbjct: 67  CVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDD----SAANKDPENLNTSSSPSSD 121

Query: 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNM 221
             +R                    S+ F   G+ LA  +  +L       
Sbjct: 122 LYIR--------------------SVCFSPDGKFLATGAEDRLIRIWDIE 151

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185
            GD TV+I D +TG C             V   P +   IA+GSLD  VR+W++ T   +
Sbjct: 182 SGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 186 GSRDFYR--------PIASIAFHASGELLAVASGHK 213
              D            + S+ F   G+ +   S  +
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 8e-12
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
           +  F+  GK   ST  D+ +       G+ +        +         +   I +GS D
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGD 327

Query: 172 HEVRLWN 178
            +  ++ 
Sbjct: 328 KKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 3/105 (2%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
            + P G+   +   + +   +          LH H      ++F         S   D+ 
Sbjct: 231 GYCPTGEW-LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNL 288

Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIW 217
           +  W       I        + S       + +   SG  K  ++
Sbjct: 289 LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 10/95 (10%), Positives = 24/95 (25%), Gaps = 7/95 (7%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-----HGHRRTPWVVRFHPLNPTIIA 166
           A   S   + + +  G   VK+ D         +               +  P +   + 
Sbjct: 56  AVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLI 113

Query: 167 SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA 201
            G     + +W+ +        +      +    A
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 63.2 bits (152), Expect = 3e-11
 Identities = 15/141 (10%), Positives = 39/141 (27%), Gaps = 8/141 (5%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDH 172
           A     + +  T+  + + ++D  + +  K      +  P      P N T     +   
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 173 EVRLWNASTAECIGSRDF-------YRPIASIAFHASGELLAVASGHKLYIWRYNMREET 225
           ++   +  T +     +         R + S A    G+ +         +  + + +  
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

Query: 226 SSPRIVLRTRRSLRAVHFHPH 246
                        + V   P 
Sbjct: 123 RLEVFSTADGLEAKPVRTFPM 143

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.8 bits (125), Expect = 7e-08
 Identities = 14/117 (11%), Positives = 38/117 (32%), Gaps = 2/117 (1%)

Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
           F  D +  A+    +    +D +TG             +              G   + +
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRL 274

Query: 175 RLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI 230
             ++    + I + +       +AF   G+ L +    + L ++  +  E+  + ++
Sbjct: 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 20/201 (9%), Positives = 49/201 (24%), Gaps = 18/201 (8%)

Query: 105 PPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLH------GHRRTPWVVRF 157
           P       A  +PD +T     +    +  ID  T       +         R+ +    
Sbjct: 37  PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 96

Query: 158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-----YRPIASIAFHASGELLAVASGH 212
            P    + A+ +    +          +           +P+ +        L+  A   
Sbjct: 97  SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156

Query: 213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSP 272
            LY+   ++       ++ ++T +   A+             +V      +S     +  
Sbjct: 157 SLYVAGPDIY------KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 273 GYWRYPPPVICMAGAHSSSHP 293
                              + 
Sbjct: 211 YTIARFKDDKQDPATADLLYG 231

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 6/41 (14%), Positives = 13/41 (31%)

Query: 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145
               +    AF   G  L      + + + +  T   +K +
Sbjct: 289 NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.3 bits (144), Expect = 2e-10
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 86  SWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145
           + V+                   S     +SPDG  +AS   D T+KI +  T    K +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276

Query: 146 HGHRRTP-WVVRFHPLNPTIIASGSLDHEVRLWN 178
               R     +         + S S +  +   N
Sbjct: 277 PVGTRIEDQQLGIIW-TKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.1 bits (141), Expect = 5e-10
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL 170
           +    +P G  +   +G  +V  +   + +  ++   H     V +  P +    ASG +
Sbjct: 21  VVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDV 78

Query: 171 DHEVRLWN 178
              VR+W+
Sbjct: 79  HGNVRIWD 86

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 136 CQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA 195
                   + +              + T IAS S D  +++WN +T +   +      I 
Sbjct: 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283

Query: 196 S--IAFHASGELLAVASGHK-LYIW 217
              +    + + L   S +  +   
Sbjct: 284 DQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.6 bits (142), Expect = 3e-10
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 3/110 (2%)

Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIAS 196
           GS  +V +GH +    +     +   + S   +  +  W+ ST              I  
Sbjct: 2   GSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 197 IAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246
           I   + G+L  V+    L +         SS  +  +       +     
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 110

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.8 bits (119), Expect = 3e-07
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSL 170
           A + S DGKTL S   +  +   D  TG   +V    H      ++    +   + + S 
Sbjct: 17  ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT--SKGDLFTVSW 74

Query: 171 DHEVRLWNASTAEC 184
           D  +++  A  +  
Sbjct: 75  DDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (108), Expect = 6e-06
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 87  WVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL- 145
              + + +         +         ++SPD   LA+   D++V + +    S   ++ 
Sbjct: 204 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 263

Query: 146 -HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
              H  +         N T I S   D  ++ WN
Sbjct: 264 KGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 4/99 (4%)

Query: 124 STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE 183
                     +                          +   +A+GSLD+ V +WN +   
Sbjct: 198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 257

Query: 184 C----IGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
                I        + S+ +     +++      +  W 
Sbjct: 258 DHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 4e-10
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 4/86 (4%)

Query: 103 LSPPPRSTIAA-AFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLHGHRRTPWVVRFH 158
           +   P+  I+     P    L  T  D ++ +      +    L     ++       F 
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 159 PLNPTIIASGSLDHEVRLWNASTAEC 184
                 I  G++  E+   +   +  
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 17/161 (10%), Positives = 38/161 (23%), Gaps = 18/161 (11%)

Query: 87  WVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL- 145
           W                    +    A    + +  A +  D  V +             
Sbjct: 174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233

Query: 146 --------------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY 191
                                  + F P     + +   D  +  WN  T + I +   +
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292

Query: 192 RPIASIAFHASGELLAVASGHKLYI--WRYNMREETSSPRI 230
              + +    S  +L +A+    +      +   E ++  I
Sbjct: 293 NEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 8/86 (9%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST----AECIGSRDFYRPIAS 196
            +++    +     ++  P + +++   S D  + ++         + + S  +  P+  
Sbjct: 3   IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 197 IAFHASGELLAVASGHKLYIWRYNMR 222
             F  + +L       +  I + ++ 
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 194 IASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252
           I+ I    S  LL + S    L +++++++ +       LR +  L   +F  +    + 
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 253 TA 254
             
Sbjct: 74  VG 75

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (139), Expect = 1e-09
 Identities = 17/148 (11%), Positives = 36/148 (24%), Gaps = 7/148 (4%)

Query: 106 PPRST-------IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
           P R+T       +      +   + +   D  +++ D      L  L GH    W +++ 
Sbjct: 3   PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62

Query: 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
                +  S      V          +                      V       +  
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 219 YNMREETSSPRIVLRTRRSLRAVHFHPH 246
           + + +E+S P         L       +
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEEN 150

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 7e-09
 Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 4/93 (4%)

Query: 86  SWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV- 144
           +                       +    F      L S   ++   I + ++G  +   
Sbjct: 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN 319

Query: 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
           +       W V F     T++A+   D +  L 
Sbjct: 320 ILKDADQIWSVNFKG--KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 9e-07
 Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185
                  I         +    H      +    ++  I+ SGS +++  ++N  + + +
Sbjct: 258 SAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 316

Query: 186 GS--RDFYRPIASIAFHASGELLAVASGHKLYIWRYN 220
            +        I S+ F     + AV    + ++   +
Sbjct: 317 HANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
            D K + S  GD T+K+ +  T   ++ L+GH      +        ++ SGS D+ +RL
Sbjct: 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH---KRGIACLQYRDRLVVSGSSDNTIRL 202

Query: 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRR 236
           W+     C+   + +  +       +  +++ A   K+ +W      +  +P   L  R 
Sbjct: 203 WDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 262

Query: 237 ------SLRAVHFHPHAAPLLLTA 254
                  +  + F       ++++
Sbjct: 263 LVEHSGRVFRLQFDEF---QIVSS 283

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 9e-09
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 12/112 (10%)

Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
                + + S   D+T+++ D + G+CL+VL GH     +VR    +   I SG+ D ++
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH---EELVRCIRFDNKRIVSGAYDGKI 240

Query: 175 RLWNASTAECIGSRDFYRPIASIAFHA--------SGELLAVASG-HKLYIW 217
           ++W+   A    +      + ++  H+            +  +S    + IW
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 8e-08
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 93  LHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---------SCLK 143
           L  +    C         +      D K + S   D  +K+ D              CL+
Sbjct: 202 LWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 261

Query: 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
            L  H    + ++F       I S S D  + +W+
Sbjct: 262 TLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 4e-07
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
               D + + S   D+T+KI D  T  C ++L GH  +   +++  
Sbjct: 20  CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 127 GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186
           G H+++ I C++           +  + +++   +   I SG  D+ +++W+ +T EC  
Sbjct: 1   GRHSLQRIHCRSE--------TSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKR 49

Query: 187 S 187
            
Sbjct: 50  I 50

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--HGHRRT 151
                       P +  I A    D +  A+   D T+++ D  T  C++       +  
Sbjct: 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 297

Query: 152 PWVVRFHPLNPTIIASGSLDHEVRLWN 178
              V         I S SLD  +  + 
Sbjct: 298 NQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 4e-08
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 18/169 (10%)

Query: 103 LSPPPRST----IAAAFSPDGKTLASTHGDHT-VKIIDCQTGS--CLKVLHGHRRTP-WV 154
           + P P +        ++ P    +A   G    V+ +D        +    GH  +    
Sbjct: 9   IPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT 68

Query: 155 VRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRDFYR---------PIASIAFHASGE 204
           V+F P+     + SG    +V +W  +  +   S +            PI+ I++   G 
Sbjct: 69  VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128

Query: 205 LLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253
            L V    +     +   +  +S   V    + + A H         +T
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 9/77 (11%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-----GSRDFYRPIASIAFH 200
                   +     L+    A+   D  +R+W+ +T++C+       +        +   
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306

Query: 201 ASGELLAVASGHKLYIW 217
            +G +++++    L  +
Sbjct: 307 GNGRIISLSLDGTLNFY 323

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 57.7 bits (138), Expect = 3e-09
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 6/118 (5%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-----HGHRRTPWVVRFHPLNPTIIA 166
            +  S  G+ L     D  + +ID       KV         R           +   IA
Sbjct: 66  ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA 125

Query: 167 SGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
                 +  + +  T E           + +  +H    + A+ + H+   +  N++E
Sbjct: 126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.7 bits (120), Expect = 4e-07
 Identities = 19/160 (11%), Positives = 40/160 (25%), Gaps = 11/160 (6%)

Query: 103 LSPPPRSTIAAAFSPDGKTLA--STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160
           L  P           D   L   +      + ++D  +   +KV+        + R    
Sbjct: 14  LVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA- 71

Query: 161 NPTIIASGSLDHEVRLWNASTAEC-----IGSRDFYRPIA-SIAFHASGELLAVASGHKL 214
           +   +     D  + + +    E      I      R +  S             +    
Sbjct: 72  SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP 131

Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254
                +  E     +IV     ++    +HP      + A
Sbjct: 132 QFAIMDG-ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.5 bits (96), Expect = 4e-04
 Identities = 26/202 (12%), Positives = 57/202 (28%), Gaps = 18/202 (8%)

Query: 73  IFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLAST-HGDHTV 131
           +   GRDAR  +      E       K            +     + +   +  +     
Sbjct: 76  LLVIGRDARIDMIDLWAKEPTKVAEIKIG--IEARSVESSKFKGYEDRYTIAGAYWPPQF 133

Query: 132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI------ 185
            I+D +T    +++     T     +HP         S +H   + N      +      
Sbjct: 134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 193

Query: 186 -------GSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE--ETSSPRIVLRTRR 236
                   S      +A   + +S      A+ +   +   + ++   ++   +      
Sbjct: 194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 253

Query: 237 SLRAVHFHPHAAPLLLTAEVND 258
              A   HP   P+  T+ + D
Sbjct: 254 GRGANFVHPKYGPVWSTSHLGD 275

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 8e-04
 Identities = 21/148 (14%), Positives = 43/148 (29%), Gaps = 17/148 (11%)

Query: 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
           P      + +   DG                      +  L G       ++ HP +  +
Sbjct: 262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQ---YAWKKVAELQGQGGGSLFIKTHPKSSHL 318

Query: 165 IA------SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV-----ASGHK 213
                      +   V +++    +         PIA  A    G    V       G +
Sbjct: 319 YVDTTFNPDARISQSVAVFDLKNLDAKYQV---LPIAEWADLGEGAKRVVQPEYNKRGDE 375

Query: 214 LYIWRYNMREETSSPRIVLRTRRSLRAV 241
           ++   +N + ++S+  +V      L+AV
Sbjct: 376 VWFSVWNGKNDSSALVVVDDKTLKLKAV 403

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 11/119 (9%), Positives = 26/119 (21%), Gaps = 5/119 (4%)

Query: 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGS 169
                  D      T     +  +D +TG      +       +    +P          
Sbjct: 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA---FG 257

Query: 170 LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSS 227
             + +  ++      I          S+     G  + +      L  +     E+   
Sbjct: 258 AYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 8/107 (7%)

Query: 122 LASTHGDHTVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179
           + +      + +ID +  +  KV+       TP V    P      A+ +    +   + 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 180 STAECIGSRDFYRP------IASIAFHASGELLAVASGHKLYIWRYN 220
            T E +G  D   P      +   A    G+ LA+          + 
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 17/147 (11%)

Query: 99  KYCPLSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157
           K   ++    + +    +P G+   A+ +   ++  ID  TG  L  +        V   
Sbjct: 25  KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84

Query: 158 HPL----NPTIIASGSLDHEVRL------------WNASTAECIGSRDFYRPIASIAFHA 201
                  +   +A       + L            ++A T     + +  R I  +A+  
Sbjct: 85  FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR 144

Query: 202 SGELLAVASGHKLYIWRYNMREETSSP 228
            G  L         +           P
Sbjct: 145 DGSKLYGLGRDLHVMDPEAGTLVEDKP 171

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 4/50 (8%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL----HGHRRTPWVVRF 157
           +   S DG T+        +   D +T      +    +       V  F
Sbjct: 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLF 333

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 5e-08
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTP 152
                K   +S  P    A     +   +A+   D  + I   +     +K L+ H+   
Sbjct: 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 261

Query: 153 WVVRFHPLNPTIIASGSLDHEVRLWN 178
             + +    P+ + S   D  ++ WN
Sbjct: 262 NNLLWET--PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 5e-08
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200
            LK + GH +    +  +PL      SGS D  +  W++S+      +D    I S+   
Sbjct: 5   VLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNS 55

Query: 201 ASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246
            + E  +++    L +      E  S P++         AV  +  
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD 101

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 10/93 (10%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIG 186
              VK       +        +          +   ++A+GSLD  + +++     + I 
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252

Query: 187 SRDFYR-PIASIAFHASGELLAVASGHKLYIWR 218
           + + ++  + ++ +     L++  +   +  W 
Sbjct: 253 ALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 13/126 (10%), Positives = 30/126 (23%), Gaps = 7/126 (5%)

Query: 71  SQIFEAGRDARRGLASWVEAESLHHLRPK-YCPLSPPPRSTIAAAFSPDGKTLASTHGDH 129
           S   EAG      +       ++     +   PL                          
Sbjct: 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 298

Query: 130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD 189
            +   D +T      +   +     +R    +   +     D ++  +     E   + +
Sbjct: 299 VLLKYDVKTRK----VTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

Query: 190 F-YRPI 194
              RP+
Sbjct: 354 TDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 109 STIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS 167
           S  A  FSP DG  +A         I D      LKV    R     VR           
Sbjct: 4   SKFAEDFSPLDGDLIAFV-SRGQAFIQDVSGTYVLKVPEPLR--IRYVRRGGDTKVAFIH 60

Query: 168 GSLDHE-VRLWNASTAECIGSRDFYRPIASIAFH 200
           G+ + + + +++  T +     +    + ++   
Sbjct: 61  GTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVD 94

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 5e-07
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 12/84 (14%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSC------------LKVLHGHRRTPWVVRFHPLN 161
           + S       S  GD  +K+ D +                 K    H      +      
Sbjct: 19  SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78

Query: 162 PTIIASGSLDHEVRLWNASTAECI 185
             ++A+ S   ++  +  +  +  
Sbjct: 79  LCLVATTSFSGDLLFYRITREDET 102

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 4e-05
 Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 64  RKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTI-AAAFSPDGKTL 122
                  S  F             + + S+     +         S + + +F+  G+TL
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 123 ASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
            S   D  ++  D +T   +  L+ H         ++       ++   G  D  V+   
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD--VKFLK 362

Query: 179 ASTAECIGSRDFYRPIASIAF 199
                 +G+ D    +  +  
Sbjct: 363 KGWRSGMGA-DLNESLCCVCL 382

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 8e-07
 Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 2/87 (2%)

Query: 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL- 160
            ++                          V ++D +TG  L            +      
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDE 311

Query: 161 NPTIIASGSLDHEVRLWNASTAECIGS 187
            P + A  + D  + + +A + E + S
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRS 338

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 20/154 (12%), Positives = 41/154 (26%), Gaps = 16/154 (10%)

Query: 110 TIAAAFSPDGKTL-----ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
            I  A +PD + +     A         +ID + G  + ++ G                I
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFI 61

Query: 165 ---------IASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLY 215
                    IA G     V +++  T       +       +             G  L 
Sbjct: 62  AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL 121

Query: 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP 249
            ++++         +  +  + +  V    H  P
Sbjct: 122 FYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP 155

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 105 PPPRSTIAAAFSPDGKTL--ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
                  +   S D K L  A + GD T+ I D ++G  L+ ++     P V+    
Sbjct: 297 EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 19/148 (12%), Positives = 33/148 (22%), Gaps = 26/148 (17%)

Query: 114 AFSPDGKTLAST----------HGDHTVKIIDCQTGSCLKVLHGHRRT-------PWVVR 156
             + DG  +A                 V++ D  T      +             PW+  
Sbjct: 53  VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112

Query: 157 FHPLNPTII-ASGSLDHEVRLWNASTAECIGSRD--------FYRPIASIAFHASGELLA 207
             P   T++    S    V + +          D           P         G L  
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK 172

Query: 208 VASGHKLYIWRYNMREETSSPRIVLRTR 235
           VA G +      +          ++   
Sbjct: 173 VAFGTEGTPEITHTEVFHPEDEFLINHP 200

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 21/130 (16%), Positives = 33/130 (25%), Gaps = 24/130 (18%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLNPTIIA--- 166
             A+S     L        +  ID  +G    L  +           + P     +A   
Sbjct: 199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 258

Query: 167 ----------------SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS 210
                             +    V + +A T E +   +    I SI      + L  A 
Sbjct: 259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 318

Query: 211 G---HKLYIW 217
                 LYI 
Sbjct: 319 STGDKTLYIH 328

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 127 GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184
               + +ID  +      +      P      P    +  + +  ++V + + +T   
Sbjct: 10  ESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 1/94 (1%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
            +       +   P                     +TV +ID  T      +      P 
Sbjct: 189 TNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PA 247

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS 187
            +   P    +  + S  + V + + +T     +
Sbjct: 248 GIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT 281

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 112 AAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVL 145
             A +PDGK +  +    +TV +ID  T +    +
Sbjct: 248 GIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 114 AFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
             SPDG  +  +    + V IID  T   +        +P  V   P    +  +     
Sbjct: 38  VISPDGTKVYVANAHSNDVSIIDTATN-NVIATVPAGSSPQGVAVSPDGKQVYVTNMASS 96

Query: 173 EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNM 221
            + + + ++    G+    +    +A    G+ L V +     +   N 
Sbjct: 97  TLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINT 145

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 7/104 (6%), Positives = 27/104 (25%), Gaps = 6/104 (5%)

Query: 124 STHGDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181
           ++     + + +      L +            +   P    +      +  V  +  + 
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 182 AECIGSRDFYRPI----ASIAFHASGELLAVASGHKLYIWRYNM 221
            +   +      +      I+    G+ + V S +   +    +
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.8 bits (89), Expect = 0.002
 Identities = 31/289 (10%), Positives = 63/289 (21%), Gaps = 43/289 (14%)

Query: 109 STIAAAFSPDGKTL-----ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT 163
           S+         +       A   G     +     G  L    G      +         
Sbjct: 21  SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA--FLSLAVAGHSGSD 78

Query: 164 I---------IASGSLDHEVRLWNASTAECIGSRDFYRPIA--------SIAFHASGELL 206
                      A G     V +++  T   I   +               I   AS   L
Sbjct: 79  FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL 138

Query: 207 AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSL 266
                        ++   +       +  +S    H HP AA            +S ++ 
Sbjct: 139 LFFLFGSSAAAGLSVPGAS-----DDQLTKSASCFHIHPGAAATHYL---GSCPASLAAS 190

Query: 267 TLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHD 326
            LA +P                  +    A+           P  +      S+   +  
Sbjct: 191 DLAAAPAAAG-----------IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239

Query: 327 SGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGT 375
           +     + ++  + S R       +G   +              + + +
Sbjct: 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS 288

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	768
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.9
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.89
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.89
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.89
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.88
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.88
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.86
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.86
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.85
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.84
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.83
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.83
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.82
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.81
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.77
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.77
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.76
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.75
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.74
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.73
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.72
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.72
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.69
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.69
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.68
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.67
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.67
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.64
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.63
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.63
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.53
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.52
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.41
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.39
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.38
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.34
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.15
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.13
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.13
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.08
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.05
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.98
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.67
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.49
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.46
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.39
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.32
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.31
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.19
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.15
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.1
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.96
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.85
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.7
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.65
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.63
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.61
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.58
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.57
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.53
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.39
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.94
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.06
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.64
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.98
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.36
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.17
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.04
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.01
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.94
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.76
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.81
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.76
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	91.33
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.74
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.37
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.19
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.52
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.26
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	88.78
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	88.63
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.55
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	86.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	84.6
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	83.91
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	83.89
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	82.4
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	81.23

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-21  Score=204.82  Aligned_cols=217  Identities=18%  Similarity=0.182  Sum_probs=178.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (768)
                      .+...++..|++++.|+.|++||+...      .+..|...|.+++|+|++.++++++.|+.|++||+.++++...+.+|
T Consensus       103 v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~  182 (337)
T d1gxra_         103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             EEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            445567889999999999999998754      35689999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~  227 (768)
                      ...|.+++|++ ++..+++++.|+.|++||+++++.+..+.+...|.+++|+|++++|++++.++ +++||+++.+..  
T Consensus       183 ~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--  259 (337)
T d1gxra_         183 TDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--  259 (337)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE--
T ss_pred             ccccccccccc-cccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc--
Confidence            99999999999 99999999999999999999999999999999999999999999999998655 999999887642  


Q ss_pred             CeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce
Q 004203          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (768)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil  307 (768)
                        ....|...|.+++|+|+|++|++++...                       .+.+|+...+.......    ...++.
T Consensus       260 --~~~~~~~~i~~v~~s~~g~~l~s~s~Dg-----------------------~i~iwd~~~~~~~~~~~----~~~~v~  310 (337)
T d1gxra_         260 --QLHLHESCVLSLKFAYCGKWFVSTGKDN-----------------------LLNAWRTPYGASIFQSK----ESSSVL  310 (337)
T ss_dssp             --EECCCSSCEEEEEECTTSSEEEEEETTS-----------------------EEEEEETTTCCEEEEEE----CSSCEE
T ss_pred             --cccccccccceEEECCCCCEEEEEeCCC-----------------------eEEEEECCCCCEEEEcc----CCCCEE
Confidence              4567889999999999999887765311                       12222222221111111    123566


Q ss_pred             EEEEecCCCEEEEEec
Q 004203          308 RPSFVRDDERISLQHT  323 (768)
Q Consensus       308 ~psFSpDG~rIv~~~~  323 (768)
                      ...|+||++.|+....
T Consensus       311 ~~~~s~d~~~l~t~s~  326 (337)
T d1gxra_         311 SCDISVDDKYIVTGSG  326 (337)
T ss_dssp             EEEECTTSCEEEEEET
T ss_pred             EEEEeCCCCEEEEEeC
Confidence            7899999999887543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=5.1e-22  Score=207.37  Aligned_cols=190  Identities=14%  Similarity=0.172  Sum_probs=158.8

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEeCCCCeEEEE
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKV  144 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~  144 (768)
                      .......++..|++++.|+.|++||....      .+..|...|.+++|+||+++|++++.  +..+++||+++++....
T Consensus        62 ~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~  141 (311)
T d1nr0a1          62 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN  141 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred             EEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccc
Confidence            33445678999999999999999999875      25689999999999999999999986  45699999999999999


Q ss_pred             EecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCC
Q 004203          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMR  222 (768)
Q Consensus       145 l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~  222 (768)
                      +.+|...|++++|+|++...|++|+.|+.|++||+++++....+ .|...|.+++|+|++++|++++.+ .|++||+.++
T Consensus       142 l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccc
Confidence            99999999999999943446899999999999999999888776 478899999999999999999854 5999999887


Q ss_pred             cccc----CCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203          223 EETS----SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (768)
Q Consensus       223 ~~~~----~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg  262 (768)
                      ....    ......+|...|++++|+|++++|++++.     +||+.++
T Consensus       222 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            5432    11223457889999999999998887654     5665544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=3.8e-22  Score=211.56  Aligned_cols=179  Identities=16%  Similarity=0.156  Sum_probs=147.0

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE--EEEEec
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHG  147 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l~g  147 (768)
                      +...++..|++++.|+.|++||...+      .+.+|.+.|++++|+|++++|++++.|++|+|||+++++.  ...+.+
T Consensus        14 ~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~   93 (371)
T d1k8kc_          14 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR   93 (371)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccc
Confidence            34467888999999999999999755      3679999999999999999999999999999999988764  445578


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-----ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCC
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNM  221 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-----l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t  221 (768)
                      |...|.+++|+| +++.|++++.|++|++|++........     ..|...|.+++|+|++++|++++.+ .|++||...
T Consensus        94 ~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_          94 INRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             cccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeecc
Confidence            889999999999 999999999999999999877654322     2377899999999999999999855 599999875


Q ss_pred             Ccccc---------------CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          222 REETS---------------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       222 ~~~~~---------------~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      .....               .......|...|.+++|+|+|+++++++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  221 (371)
T d1k8kc_         173 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH  221 (371)
T ss_dssp             TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             CccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc
Confidence            43211               01223457788999999999998776654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.89  E-value=8e-22  Score=205.86  Aligned_cols=218  Identities=13%  Similarity=0.081  Sum_probs=167.5

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE--EEEEecCC
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHGHR  149 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l~gH~  149 (768)
                      +....+..|+.+ .++.|.+|++...    .+.+|...|++++|+|||++|++|+.|++|++||+.+++.  ...+.+|.
T Consensus        24 a~~~~g~~l~~~-~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~  102 (311)
T d1nr0a1          24 GNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS  102 (311)
T ss_dssp             EECTTSSEEEEE-ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS
T ss_pred             EEcCCCCEEEEE-eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccccc
Confidence            344566666665 4668999999876    3579999999999999999999999999999999988764  35688999


Q ss_pred             CCcEEEEEccCCCCEEEEEeC--CCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCE-EEEEECC-eEEEEEcCCCcc
Q 004203          150 RTPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGSR-DFYRPIASIAFHASGEL-LAVASGH-KLYIWRYNMREE  224 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~--DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~-LatgSdd-~I~IWDl~t~~~  224 (768)
                      +.|.+++|+| +++++++++.  +..+++||+++++....+ .|...|.+++|+|++++ |++++++ .|++||+++.+.
T Consensus       103 ~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~  181 (311)
T d1nr0a1         103 GPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF  181 (311)
T ss_dssp             SCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE
T ss_pred             Cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccc
Confidence            9999999999 8999988876  456999999998887775 47889999999999985 7777755 499999998775


Q ss_pred             ccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCccccc
Q 004203          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEV  299 (768)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~  299 (768)
                      ..   ....|...|+++.|+|+++++++++.     +|++..+.....+.   ..                     ....
T Consensus       182 ~~---~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~---~~---------------------~~~~  234 (311)
T d1nr0a1         182 KS---TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE---DD---------------------SLKN  234 (311)
T ss_dssp             EE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB---CT---------------------TSSS
T ss_pred             cc---ccccccccccccccCcccccccccccccccccccccccccccccc---cc---------------------cccc
Confidence            33   66678999999999999998887764     45544332111111   00                     0001


Q ss_pred             CCCCCCceEEEEecCCCEEEEEe
Q 004203          300 PLITPPFLRPSFVRDDERISLQH  322 (768)
Q Consensus       300 ~~~slpil~psFSpDG~rIv~~~  322 (768)
                      .+...++...+|+||++.|+..-
T Consensus       235 ~~h~~~V~~~~~s~~~~~l~tgs  257 (311)
T d1nr0a1         235 VAHSGSVFGLTWSPDGTKIASAS  257 (311)
T ss_dssp             CSSSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccCCCCCEEEEEe
Confidence            11233566889999999988753

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.2e-21  Score=198.76  Aligned_cols=128  Identities=20%  Similarity=0.311  Sum_probs=108.9

Q ss_pred             EEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCeEEEEEc
Q 004203          124 STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DFYRPIASIAFH  200 (768)
Q Consensus       124 SgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l---~h~~~V~svafS  200 (768)
                      +++.|+.|++||+++++++..+.+|.+.|++++|+| ++++|++++.|+.|++||++..+....+   .+...+.+++|+
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC
Confidence            344556666777777777788889999999999999 9999999999999999999998887765   356689999999


Q ss_pred             CCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          201 ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       201 PDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |++++|++++.++ |++||+.+++...   .+.+|...|++++|+|++++|++++.
T Consensus       280 ~~~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~H~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         280 KSGRLLLAGYDDFNCNVWDALKADRAG---VLAGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCCCEEEEEECCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence            9999999999654 9999999887644   66789999999999999998887664

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.6e-21  Score=199.15  Aligned_cols=175  Identities=12%  Similarity=0.096  Sum_probs=151.0

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--CeEEE
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--GSCLK  143 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~---------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t--g~~l~  143 (768)
                      .+...+++.|++++ |+.|++||+...         ...+|.+.|.+++|+|||++|++++.|++|++||+..  ++...
T Consensus        57 v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  135 (337)
T d1gxra_          57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred             EEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccc
Confidence            44557888999987 789999998754         2357999999999999999999999999999999875  45667


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCC
Q 004203          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG-HKLYIWRYNM  221 (768)
Q Consensus       144 ~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t  221 (768)
                      .+.+|...+..+.|+| ++.++++++.|+.|++||+.++++.... .|...+.+++|++++..+++++. +.+++||+++
T Consensus       136 ~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~  214 (337)
T d1gxra_         136 ELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             EEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8889999999999999 9999999999999999999999887765 47889999999999999999985 5599999988


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++..    ....+...|.+++|+|+++++++++.
T Consensus       215 ~~~~----~~~~~~~~i~~l~~~~~~~~l~~~~~  244 (337)
T d1gxra_         215 GRQL----QQHDFTSQIFSLGYCPTGEWLAVGME  244 (337)
T ss_dssp             TEEE----EEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             ceee----cccccccceEEEEEcccccccceecc
Confidence            7653    35568899999999999998877654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3e-20  Score=184.43  Aligned_cols=185  Identities=23%  Similarity=0.349  Sum_probs=144.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~  184 (768)
                      +|...+.++.|+++++.+++++.|+.+++||+++++.+..+.+|...+.+++|+| ++.+|++++.|+.|++||+.+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~  177 (317)
T d1vyhc1          99 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKEC  177 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE
T ss_pred             cccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeecccee
Confidence            3444455555555566677889999999999999999999999999999999999 999999999999999999999988


Q ss_pred             EEEe-cCCCCeEEEEEcCCC--------------------CEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEE
Q 004203          185 IGSR-DFYRPIASIAFHASG--------------------ELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVH  242 (768)
Q Consensus       185 i~~l-~h~~~V~svafSPDG--------------------~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVa  242 (768)
                      ...+ .+...+.+++|+|++                    .++++++.+ .|++||+++++...   .+.+|...|.+++
T Consensus       178 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~---~~~~~~~~v~~~~  254 (317)
T d1vyhc1         178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM---TLVGHDNWVRGVL  254 (317)
T ss_dssp             EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEE
T ss_pred             eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE---EEeCCCCCEEEEE
Confidence            8776 477889999998764                    467788754 59999999887544   6678999999999


Q ss_pred             EccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCE
Q 004203          243 FHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER  317 (768)
Q Consensus       243 FSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~r  317 (768)
                      |+|++++|++++.     +|++..++....+.   +                            ...++...+|++|++.
T Consensus       255 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~----------------------------h~~~V~~~~~s~~~~~  303 (317)
T d1vyhc1         255 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLN---A----------------------------HEHFVTSLDFHKTAPY  303 (317)
T ss_dssp             ECSSSSCEEEEETTTEEEEECCTTSCCCEEEE---C----------------------------CSSCEEEEEECSSSSC
T ss_pred             ECCCCCEEEEEECCCeEEEEECCCCcEEEEEc---C----------------------------CCCCEEEEEEcCCCCE
Confidence            9999998887764     44544332221111   1                            2235667899999999


Q ss_pred             EEEEecC
Q 004203          318 ISLQHTE  324 (768)
Q Consensus       318 Iv~~~~d  324 (768)
                      |+....|
T Consensus       304 l~s~s~D  310 (317)
T d1vyhc1         304 VVTGSVD  310 (317)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            8875443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=3.5e-21  Score=195.17  Aligned_cols=189  Identities=16%  Similarity=0.164  Sum_probs=143.7

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEE----
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW----  177 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLW----  177 (768)
                      +|+||.+.|++++|+||+++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.+++|    
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~  128 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEESSS
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeecccccc
Confidence            4789999999999999999999999999999999999999999999999999999999 66666666555555554    


Q ss_pred             --------------------------------------------------------------------------------
Q 004203          178 --------------------------------------------------------------------------------  177 (768)
Q Consensus       178 --------------------------------------------------------------------------------  177 (768)
                                                                                                      
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  208 (340)
T d1tbga_         129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA  208 (340)
T ss_dssp             SCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             cccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceE
Confidence                                                                                            


Q ss_pred             ---ECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          178 ---NASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       178 ---Dl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                         |+++++++..+ .|...|.+++|+|++++|++++.++ |++||++...... ......+...|.+++|+|++++|++
T Consensus       209 ~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
T d1tbga_         209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCTTCCSCEEEEEECSSSCEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc-ccccccccCceEEEEECCCCCEEEE
Confidence               44444444443 3678899999999999999999655 9999998876533 1122345678999999999998877


Q ss_pred             EEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203          253 TAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (768)
Q Consensus       253 S~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~  323 (768)
                      ++.     +|++..++.   +....+                            ...++...+|+||++.|+....
T Consensus       288 g~~dg~i~iwd~~~~~~---~~~~~~----------------------------H~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         288 GYDDFNCNVWDALKADR---AGVLAG----------------------------HDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             EETTSCEEEEETTTCCE---EEEECC----------------------------CSSCEEEEEECTTSSCEEEEET
T ss_pred             EECCCEEEEEECCCCcE---EEEEcC----------------------------CCCCEEEEEEeCCCCEEEEEcc
Confidence            664     444443221   111122                            2335667899999999887544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.6e-20  Score=184.81  Aligned_cols=178  Identities=17%  Similarity=0.289  Sum_probs=157.2

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g  150 (768)
                      .....++..+++++.|+.+++||..+.    .+.+|...+.+++|++++++|++++.|+.|++||+.+++....+.+|..
T Consensus       107 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~  186 (317)
T d1vyhc1         107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH  186 (317)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             eeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCC
Confidence            334456788999999999999999876    4678999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccC-------------------CCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE
Q 004203          151 TPWVVRFHPL-------------------NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       151 ~V~sVafSP~-------------------dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS  210 (768)
                      .+.++.|+|+                   .+.++++++.|+.|++||+++++++..+ .|...|.+++|+|++++|++++
T Consensus       187 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  266 (317)
T d1vyhc1         187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA  266 (317)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             CceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE
Confidence            9999999883                   2357899999999999999999988876 4888999999999999999998


Q ss_pred             C-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          211 G-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       211 d-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      . +.|++||+.+++...   .+..|...|++++|+|++++|++++.
T Consensus       267 ~dg~i~iwd~~~~~~~~---~~~~h~~~V~~~~~s~~~~~l~s~s~  309 (317)
T d1vyhc1         267 DDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYVVTGSV  309 (317)
T ss_dssp             TTTEEEEECCTTSCCCE---EEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             CCCeEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            5 559999999887543   67789999999999999998887664

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.1e-19  Score=189.64  Aligned_cols=228  Identities=18%  Similarity=0.225  Sum_probs=168.1

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCC----------------------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYCP----------------------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKI  133 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~~----------------------L~gH~~~VtslafSPDG~~LaSgS~DgtVrV  133 (768)
                      +...++..|++++ |+.|++||+.+++                      ...|...|++++|+|||++|++|+.|+.|++
T Consensus        69 ~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i  147 (388)
T d1erja_          69 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRI  147 (388)
T ss_dssp             EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccc
Confidence            3445778888886 8899999987542                      2357788999999999999999999999999


Q ss_pred             EeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcC-CCCEEEEEECC
Q 004203          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASGH  212 (768)
Q Consensus       134 WDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSP-DG~~LatgSdd  212 (768)
                      ||..+++.+..+.+|...|.++.|++ ++..+++++.++.+++||+++........+......+.|.+ ++++|++++.+
T Consensus       148 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  226 (388)
T d1erja_         148 WDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD  226 (388)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETT
T ss_pred             cccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCC
Confidence            99999999999999999999999999 89999999999999999999998888877777777777765 78899999855


Q ss_pred             -eEEEEEcCCCccccC----CeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeE
Q 004203          213 -KLYIWRYNMREETSS----PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVI  282 (768)
Q Consensus       213 -~I~IWDl~t~~~~~~----~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V  282 (768)
                       .|++||+.+......    ......|...|.++.|+|++++|++++.     +|+++..............     ...
T Consensus       227 ~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~  301 (388)
T d1erja_         227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG-----TCE  301 (388)
T ss_dssp             SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------------CEE
T ss_pred             CeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccc-----cee
Confidence             599999988765321    1123457889999999999998887664     5666543222111110000     001


Q ss_pred             EEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          283 CMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       283 ~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                      .              ........+...+|++||+.|+.+..+
T Consensus       302 ~--------------~~~~~~~~v~~~~~s~~~~~l~sg~~d  329 (388)
T d1erja_         302 V--------------TYIGHKDFVLSVATTQNDEYILSGSKD  329 (388)
T ss_dssp             E--------------EEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred             e--------------ecccccceEEEEEECCCCCEEEEEeCC
Confidence            1              011123356678999999999875443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=3.3e-20  Score=196.43  Aligned_cols=204  Identities=15%  Similarity=0.173  Sum_probs=149.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 004203          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (768)
Q Consensus       107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~  184 (768)
                      .++|+|++|+|||++||+++.|+.|+|||+++++  .+..+++|.+.|.+++|+| ++++|++++.|++|+|||+.+++.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeeccccc
Confidence            4679999999999999999999999999998875  5678899999999999999 999999999999999999998765


Q ss_pred             EEE---ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC-CeEeecCCCCeEEEEEccCCCeEEEEEe----
Q 004203          185 IGS---RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS-PRIVLRTRRSLRAVHFHPHAAPLLLTAE----  255 (768)
Q Consensus       185 i~~---l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~-~~~l~~h~~~V~sVaFSPDG~~LlaS~s----  255 (768)
                      ...   ..|...|.+++|+|++++|++++.++ |++|++........ ......|...|.+++|+|++++|++++.    
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            444   24778999999999999999999655 99999877654221 1223457889999999999998877654    


Q ss_pred             -eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          256 -VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       256 -vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                       +|++............            .+.... ....+..........+...+|+|||++|+....+
T Consensus       166 ~v~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  222 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPT------------PWGSKM-PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  222 (371)
T ss_dssp             EEEECCCTTTSCCCCCB------------TTBSCC-CTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             EEEeeccCccccccccc------------cccccc-cceeeeeeccCccCcEEEEEeecccccccccccC
Confidence             4444432211111000            000000 0011122223334456688999999999876443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.84  E-value=7.6e-19  Score=177.63  Aligned_cols=179  Identities=13%  Similarity=0.111  Sum_probs=141.0

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC----C-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE--------
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCP----L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--------  141 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~----L-~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~--------  141 (768)
                      .+...++..|++++.|+.|++||+.+++    + .+|...|++++|+|+|++ ++++.|+.+++|+......        
T Consensus        18 l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~   96 (299)
T d1nr0a2          18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVAN   96 (299)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCccccccccccc
Confidence            3445678899999999999999998762    3 478999999999999865 5677899999998643210        


Q ss_pred             -------------------------EEEE-------ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE--E
Q 004203          142 -------------------------LKVL-------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--S  187 (768)
Q Consensus       142 -------------------------l~~l-------~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~--~  187 (768)
                                               +..+       ......+.+++|+| +++++++++.|+.|++||+++++...  .
T Consensus        97 ~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~  175 (299)
T d1nr0a2          97 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT  175 (299)
T ss_dssp             ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence                                     0000       01234567789999 89999999999999999999887644  4


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          188 RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       188 l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..|...|.+++|+|++++|++++.+ .|++||+.+............|...|++++|+|++++|++++.
T Consensus       176 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~  244 (299)
T d1nr0a2         176 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL  244 (299)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcC
Confidence            5688999999999999999999855 5999999887655444455678899999999999998877664

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=6.7e-19  Score=183.57  Aligned_cols=191  Identities=22%  Similarity=0.267  Sum_probs=153.3

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V  152 (768)
                      ...++..|++++.|+.|++|+...+    .+.+|...|.+++|++++..+++++.++.|++||.++.........+.. .
T Consensus       129 ~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~  207 (388)
T d1erja_         129 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-V  207 (388)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-E
T ss_pred             ECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccc-c
Confidence            4457889999999999999999876    4678999999999999999999999999999999999988887776555 5


Q ss_pred             EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCc
Q 004203          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--------DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMRE  223 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--------~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~  223 (768)
                      ..+.+++.++++|++++.|+.|++||+++++....+        .|...|.+++|+|++++|++++.+ .|++||+++..
T Consensus       208 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCc
Confidence            566777768999999999999999999998876654        367789999999999999999954 59999998764


Q ss_pred             ccc---------CCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203          224 ETS---------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       224 ~~~---------~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L  268 (768)
                      ...         .......|...|.+++|+|+|++|++++.     +||+.+++....+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l  346 (388)
T d1erja_         288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  346 (388)
T ss_dssp             -----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            321         11234457889999999999998887765     6777655443333

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.83  E-value=3.4e-19  Score=180.18  Aligned_cols=196  Identities=15%  Similarity=0.145  Sum_probs=141.8

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (768)
Q Consensus       102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (768)
                      .+.||.+.|++++|+|||++|++|+.|++|++||+++++.+..+. +|...|.+++|+| +++ +++++.|+.+++|++.
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEEECSS
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEEEeccC
Confidence            467999999999999999999999999999999999999888874 7899999999999 776 5566789999999975


Q ss_pred             CCcE---------------------------------EEE--------ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEE
Q 004203          181 TAEC---------------------------------IGS--------RDFYRPIASIAFHASGELLAVASGH-KLYIWR  218 (768)
Q Consensus       181 sg~~---------------------------------i~~--------l~h~~~V~svafSPDG~~LatgSdd-~I~IWD  218 (768)
                      ....                                 +..        ......+.+++|+|++++|++++.+ .|++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d  164 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK  164 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4211                                 000        1123456788999999999999855 599999


Q ss_pred             cCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccc
Q 004203          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEE  298 (768)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~  298 (768)
                      +++.....  .....|...|.+++|+|+++++++++....                       +.+|+............
T Consensus       165 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-----------------------i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         165 LSGASVSE--VKTIVHPAEITSVAFSNNGAFLVATDQSRK-----------------------VIPYSVANNFELAHTNS  219 (299)
T ss_dssp             EETTEEEE--EEEEECSSCEEEEEECTTSSEEEEEETTSC-----------------------EEEEEGGGTTEESCCCC
T ss_pred             cccccccc--cccccccccccccccccccccccccccccc-----------------------ccccccccccccccccc
Confidence            98776422  345678899999999999998877654211                       11222111111111111


Q ss_pred             cCCCCCCceEEEEecCCCEEEEEecC
Q 004203          299 VPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       299 ~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                      ......++...+|+||++.|+....|
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs~d  245 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGSLD  245 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccceEEEcCC
Confidence            11223456678999999999875443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=3.6e-20  Score=197.76  Aligned_cols=173  Identities=20%  Similarity=0.232  Sum_probs=143.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----------------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 004203           81 RRGLASWVEAESLHHLRPKYC----------------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT  138 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~----------------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t  138 (768)
                      ...+++++.|+.|++|++...                      ....+...+.+++|+||+ +|++|+.|++|+|||+++
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~  214 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  214 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence            467889999999999997422                      123456678999999997 889999999999999999


Q ss_pred             CeEEEEE------ecCCCCcEEEEEccCCCCEEEEEeCCCe---EEEEECCCCcEEEEe--------------cCCCCeE
Q 004203          139 GSCLKVL------HGHRRTPWVVRFHPLNPTIIASGSLDHE---VRLWNASTAECIGSR--------------DFYRPIA  195 (768)
Q Consensus       139 g~~l~~l------~gH~g~V~sVafSP~dg~lLaSgS~Dgt---VrLWDl~sg~~i~~l--------------~h~~~V~  195 (768)
                      ++.+..+      .+|...|++++|+| ++++|++|+.|++   |++||+++++++..+              +|...|+
T Consensus       215 ~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~  293 (393)
T d1sq9a_         215 LRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM  293 (393)
T ss_dssp             TEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred             cccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCcee
Confidence            9877654      46889999999999 9999999999974   999999999887765              4888999


Q ss_pred             EEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeE----EEEEccCCCeEEEEEeeCCc
Q 004203          196 SIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLR----AVHFHPHAAPLLLTAEVNDL  259 (768)
Q Consensus       196 svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~----sVaFSPDG~~LlaS~svwdl  259 (768)
                      +++|+||+++|++++.| .|++||+++++...   .+.+|...|.    .+.|+|++..++ ++.+|++
T Consensus       294 ~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~---~l~gH~~~v~~~~~~~~~~~~~~~~~-~~~~~~~  358 (393)
T d1sq9a_         294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLA-EPGVFDV  358 (393)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCGGGCSSGGGCCCBCTTSCBCS-SCCEEEE
T ss_pred             eeccCCCCCeeEEECCCCEEEEEECCCCCEEE---EECCcCCcccCCccEEEECCCCCEEE-EcccceE
Confidence            99999999999999955 59999999997654   6778877765    588999998654 3334443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=9.9e-19  Score=182.17  Aligned_cols=181  Identities=13%  Similarity=0.127  Sum_probs=147.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEeCCCCeEEEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKV  144 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~------------~L~gH~~~VtslafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~  144 (768)
                      .++..|++++.|++|++||....            .+..|.+.|.+++|+++|++|++++.  ++.+++|+.++++++..
T Consensus        75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  154 (325)
T d1pgua1          75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE  154 (325)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccccee
Confidence            46688999999999999998643            23568899999999999999988765  67899999999999999


Q ss_pred             EecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----cCCCCeEEEEEcCC-CCEEEEEEC-CeEEEEE
Q 004203          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHAS-GELLAVASG-HKLYIWR  218 (768)
Q Consensus       145 l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l----~h~~~V~svafSPD-G~~LatgSd-d~I~IWD  218 (768)
                      +.+|...|.+++|+|++..++++++.|+.|++||+...+.....    .+...|.+++|+|+ +.+|++++. +.|++||
T Consensus       155 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd  234 (325)
T d1pgua1         155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  234 (325)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             eeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeee
Confidence            99999999999999954556889999999999999988766654    35678999999997 578888885 5599999


Q ss_pred             cCCCccccCCeEeecCCCCeEEEEEc---cCCCeEEEEEe-----eCCcCCC
Q 004203          219 YNMREETSSPRIVLRTRRSLRAVHFH---PHAAPLLLTAE-----VNDLDSS  262 (768)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFS---PDG~~LlaS~s-----vwdl~sg  262 (768)
                      +++++...   .+..|...+..+.|+   |||++|++++.     +|++..+
T Consensus       235 ~~~~~~~~---~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         235 GKSGEFLK---YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             TTTCCEEE---ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             eccccccc---cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence            99887544   455676666555555   68888877664     6666544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.1e-17  Score=161.13  Aligned_cols=210  Identities=16%  Similarity=0.251  Sum_probs=144.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---------------
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------------  140 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~---------------  140 (768)
                      ++..|++++.|++|++||+.++    ++.+|...|.+++|+++  +|++++.|+++++|+.....               
T Consensus        26 ~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (342)
T d2ovrb2          26 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM  103 (342)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeee
Confidence            4678999999999999999877    47899999999999874  88888888888888764321               


Q ss_pred             -----------------------------------------------------------------EEEEEecCCCCcEEE
Q 004203          141 -----------------------------------------------------------------CLKVLHGHRRTPWVV  155 (768)
Q Consensus       141 -----------------------------------------------------------------~l~~l~gH~g~V~sV  155 (768)
                                                                                       .+..+.+|...+  .
T Consensus       104 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~  181 (342)
T d2ovrb2         104 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--Y  181 (342)
T ss_dssp             EEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE--E
T ss_pred             ecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccc--c
Confidence                                                                             122223333333  3


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeec
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      .+++ ++..+++++.|++|++||++.++++..+. |...+.+++++  +++|++++.+ .|++||+...+..........
T Consensus       182 ~~~~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  258 (342)
T d2ovrb2         182 SLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNK  258 (342)
T ss_dssp             EEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTS
T ss_pred             cccC-CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccce
Confidence            3444 67899999999999999999999887764 67788877776  4689999855 599999988765431111223


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceE
Q 004203          234 TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLR  308 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~  308 (768)
                      |...+.++.|++  +++++++.     +|++++++....+....                          ......+++.
T Consensus       259 ~~~~~~~~~~~~--~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~--------------------------~~~~~~~v~~  310 (342)
T d2ovrb2         259 HQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLVTLE--------------------------SGGSGGVVWR  310 (342)
T ss_dssp             CSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEEECT--------------------------TGGGTCEEEE
T ss_pred             eeeceeecccCC--CeeEEEcCCCEEEEEECCCCCEEEEEeccc--------------------------CCCCCCCEEE
Confidence            556777777754  55666553     55665443322222110                          0112234667


Q ss_pred             EEEecCCCEEEEEecC
Q 004203          309 PSFVRDDERISLQHTE  324 (768)
Q Consensus       309 psFSpDG~rIv~~~~d  324 (768)
                      .+|+||+..++.+-.+
T Consensus       311 v~~s~~~~~la~g~~d  326 (342)
T d2ovrb2         311 IRASNTKLVCAVGSRN  326 (342)
T ss_dssp             EEECSSEEEEEEECSS
T ss_pred             EEECCCCCEEEEEeCC
Confidence            8999998877765433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.5e-17  Score=167.83  Aligned_cols=170  Identities=19%  Similarity=0.214  Sum_probs=144.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      ..+..++.+..|+.|++||..+.    .+.++...+.++.|+++++++++++.|+.|++||++++..+..+++|...|.+
T Consensus       169 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~  248 (355)
T d1nexb2         169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL  248 (355)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCE
T ss_pred             cccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccc
Confidence            35678899999999999999876    35688899999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecC
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRT  234 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h  234 (768)
                      +.|++   ++|++++.|++|++||+++++......+........|++++++|++++++.|++||+++++...  ..+.+|
T Consensus       249 ~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~--~~~~~~  323 (355)
T d1nexb2         249 LRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH--ANILKD  323 (355)
T ss_dssp             EEECS---SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCC--SCTTTT
T ss_pred             ccccc---ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEE--EEecCC
Confidence            99865   7999999999999999998876655544444444567889999999999999999999987643  235678


Q ss_pred             CCCeEEEEEccCCCeEEEEEe
Q 004203          235 RRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       235 ~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ...|.+++|+|+.  ++++++
T Consensus       324 ~~~V~~v~~~~~~--~~~~~s  342 (355)
T d1nexb2         324 ADQIWSVNFKGKT--LVAAVE  342 (355)
T ss_dssp             CSEEEEEEEETTE--EEEEEE
T ss_pred             CCCEEEEEEcCCe--EEEEEE
Confidence            8999999999863  555543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.1e-17  Score=178.36  Aligned_cols=189  Identities=16%  Similarity=0.092  Sum_probs=142.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCC-----CCEEEEEeCCCeEEEEeCCCCe--
Q 004203           82 RGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPD-----GKTLASTHGDHTVKIIDCQTGS--  140 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~--------------~L~gH~~~VtslafSPD-----G~~LaSgS~DgtVrVWDl~tg~--  140 (768)
                      ..+++++.|+.|++|+....              ....+...+..++|.++     +.++++++.|++|++||+....  
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            45678999999999987533              11235667888888875     4688999999999999974321  


Q ss_pred             -------------E---EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-------cCCCCeEEE
Q 004203          141 -------------C---LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-------DFYRPIASI  197 (768)
Q Consensus       141 -------------~---l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-------~h~~~V~sv  197 (768)
                                   .   ......+...+.+++|+| ++ +|++|+.|++|+|||+++++++..+       .|...|.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  237 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence                         0   111124556688999999 65 8999999999999999999887653       377899999


Q ss_pred             EEcCCCCEEEEEECCe----EEEEEcCCCccccC----------CeEeecCCCCeEEEEEccCCCeEEEEEe-----eCC
Q 004203          198 AFHASGELLAVASGHK----LYIWRYNMREETSS----------PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VND  258 (768)
Q Consensus       198 afSPDG~~LatgSdd~----I~IWDl~t~~~~~~----------~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwd  258 (768)
                      +|+|||++|+++++|+    |++||+.+++....          .....+|...|++++|+||+++|++++.     +||
T Consensus       238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            9999999999998543    99999988764321          1123478999999999999998877765     888


Q ss_pred             cCCCCcceeEeecCCcc
Q 004203          259 LDSSESSLTLATSPGYW  275 (768)
Q Consensus       259 l~sg~~~~~L~t~~G~~  275 (768)
                      ++.++.   +.++.||.
T Consensus       318 ~~~g~~---~~~l~gH~  331 (393)
T d1sq9a_         318 VKTKER---ITTLNMHC  331 (393)
T ss_dssp             TTTTEE---EEEEECCG
T ss_pred             CCCCCE---EEEECCcC
Confidence            876644   34444553

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.75  E-value=2.4e-17  Score=168.70  Aligned_cols=190  Identities=13%  Similarity=0.082  Sum_probs=143.0

Q ss_pred             EEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC--eEEEEECCCCcEEEE
Q 004203          111 IAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH--EVRLWNASTAECIGS  187 (768)
Q Consensus       111 tslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg--tVrLWDl~sg~~i~~  187 (768)
                      ..-.||| ||+++++++. +.|++||+++++.++.  +|...|.+++|+| |+++|++++.+.  .|++||+++++....
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~   81 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEKF   81 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEEe
Confidence            3567999 9999998875 7999999998876553  6999999999999 888888766553  799999999998888


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcce
Q 004203          188 RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSL  266 (768)
Q Consensus       188 l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~  266 (768)
                      ..|...+.+++|+|||++|++++.+. +++|++.+.+...   ....+...+.+++|+|||++|+++...........  
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~--  156 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSRFIAYGFPLKHGETDGY--  156 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC--
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceee---eeecccccccchhhccceeeeeeeccccccceeec--
Confidence            88999999999999999999999655 9999998887543   55667888999999999999887765333221100  


Q ss_pred             eEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203          267 TLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (768)
Q Consensus       267 ~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d  324 (768)
                                 ....+.+++........+.    ........+.|+|||++|++...+
T Consensus       157 -----------~~~~~~v~d~~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~s~~  199 (360)
T d1k32a3         157 -----------VMQAIHVYDMEGRKIFAAT----TENSHDYAPAFDADSKNLYYLSYR  199 (360)
T ss_dssp             -----------CEEEEEEEETTTTEEEECS----CSSSBEEEEEECTTSCEEEEEESC
T ss_pred             -----------cccceeeeccccCceeeec----ccccccccccccCCCCEEEEEeCC
Confidence                       1123444554333222111    112344578999999999986443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=5.1e-16  Score=156.42  Aligned_cols=184  Identities=17%  Similarity=0.218  Sum_probs=138.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC--cE
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT--PW  153 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~--V~  153 (768)
                      ++..|++++.|++|++||..++    ++.+|.+.|++++|+|+ .+|++++.|++|++|++...+.......+...  ..
T Consensus        22 ~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~  100 (355)
T d1nexb2          22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL  100 (355)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccc
Confidence            4678999999999999999877    57899999999999985 58999999999999999999887766554443  34


Q ss_pred             EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC----------------------CCCeEEEEEcCCCCEEEEEEC
Q 004203          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF----------------------YRPIASIAFHASGELLAVASG  211 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h----------------------~~~V~svafSPDG~~LatgSd  211 (768)
                      ...+++ ++..+++++.|+.|++||+++.........                      ........+.+++++++++..
T Consensus       101 ~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  179 (355)
T d1nexb2         101 DIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY  179 (355)
T ss_dssp             EEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET
T ss_pred             cccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecc
Confidence            456677 888999999999999999987654332110                      001122456678899999886


Q ss_pred             Ce-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203          212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       212 d~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L  268 (768)
                      +. |++||+++.+...   ....+...+.++.|+|++.++++++.     +|++..+.....+
T Consensus       180 d~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         180 DNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             TSCEEEEETTTTEEEE---EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cceeeeeeccccccee---eeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence            55 9999999887533   55667888999999999998887765     6666655444443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.5e-16  Score=165.44  Aligned_cols=175  Identities=9%  Similarity=0.040  Sum_probs=130.7

Q ss_pred             ecCCCEEEEEe--CCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeCCCCeEEEEEe---c
Q 004203           78 RDARRGLASWV--EAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKT-LASTHGDHTVKIIDCQTGSCLKVLH---G  147 (768)
Q Consensus        78 ~d~g~~LvSgs--~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~-LaSgS~DgtVrVWDl~tg~~l~~l~---g  147 (768)
                      ..++..+++.+  .++.+++|+.+++    ++.+|...|++++|+|++++ +++++.|+.|++||..+++....+.   +
T Consensus       124 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~  203 (325)
T d1pgua1         124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK  203 (325)
T ss_dssp             CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC
T ss_pred             CCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccC
Confidence            34566666655  4667899998765    47899999999999998875 6789999999999999888766654   5


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEc---CCCCEEEEEECC-eEEEEEcCCC
Q 004203          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFH---ASGELLAVASGH-KLYIWRYNMR  222 (768)
Q Consensus       148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafS---PDG~~LatgSdd-~I~IWDl~t~  222 (768)
                      |...|.+++|+|+.+.++++++.|+.|++||+++++.+..+. |...+..+.|+   |||++|++++.| .|+|||++++
T Consensus       204 ~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             CCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence            677899999999668999999999999999999999988865 55555554444   689999999855 4999999988


Q ss_pred             ccccCCeEeecCCCCeEEEE--EccCCCeEEEEE
Q 004203          223 EETSSPRIVLRTRRSLRAVH--FHPHAAPLLLTA  254 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVa--FSPDG~~LlaS~  254 (768)
                      +... ......+...+..+.  |.+++ +|++++
T Consensus       284 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~s  315 (325)
T d1pgua1         284 KCVQ-KWTLDKQQLGNQQVGVVATGNG-RIISLS  315 (325)
T ss_dssp             EEEE-EEECCTTCGGGCEEEEEEEETT-EEEEEE
T ss_pred             CEEE-EEEecCCcccCeEEEEEECCCC-EEEEEE
Confidence            7644 112222333344444  44443 355444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.72  E-value=1.4e-16  Score=163.02  Aligned_cols=169  Identities=11%  Similarity=-0.004  Sum_probs=140.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC--CCCCCCCeEEEEECCCCCEEEEEeCCC--eEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~--L~gH~~~VtslafSPDG~~LaSgS~Dg--tVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      +++.++..+ ++.|.+||...++  ..+|...|.+++|+|||++|++++.+.  .|++||+++++. ..+..|...|..+
T Consensus        14 dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~   91 (360)
T d1k32a3          14 DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAM   91 (360)
T ss_dssp             GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEE
T ss_pred             CCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEee
Confidence            455566554 5799999998773  347999999999999999999877653  799999998875 5667899999999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC----------C-eEEEEEcCCCc
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG----------H-KLYIWRYNMRE  223 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd----------d-~I~IWDl~t~~  223 (768)
                      +|+| ++++|++++.++.+++||+.+++....+. +...+.+++|+|||++|+++..          + .+++||+.+++
T Consensus        92 ~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~  170 (360)
T d1k32a3          92 GVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  170 (360)
T ss_dssp             EECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             eecc-cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc
Confidence            9999 99999999999999999999998877764 6678899999999999987641          1 28999998875


Q ss_pred             cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..    .+..+...+..+.|+|||++|++.+.
T Consensus       171 ~~----~~~~~~~~~~~~~~spdg~~l~~~s~  198 (360)
T d1k32a3         171 IF----AATTENSHDYAPAFDADSKNLYYLSY  198 (360)
T ss_dssp             EE----ECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             ee----eecccccccccccccCCCCEEEEEeC
Confidence            43    35567778899999999998887764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.72  E-value=1.8e-16  Score=171.31  Aligned_cols=141  Identities=13%  Similarity=0.018  Sum_probs=105.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE--E---ecCCCCc
Q 004203           82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV--L---HGHRRTP  152 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~--l---~gH~g~V  152 (768)
                      ..+++.++|++|++||..+++    +..| ..+..++|||||++|++++.|++|++||+++++....  +   .+|.+.+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            345778899999999999874    4455 4699999999999999999999999999999875433  2   2455666


Q ss_pred             EEEEEccCCCCEE-EEEeCCCeEEEEECCCCcEEEEe-------------------------------------------
Q 004203          153 WVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSR-------------------------------------------  188 (768)
Q Consensus       153 ~sVafSP~dg~lL-aSgS~DgtVrLWDl~sg~~i~~l-------------------------------------------  188 (768)
                      .++.|+| |++++ +++..++++++||..+++++..+                                           
T Consensus       112 ~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         112 SSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             ECCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EeeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            6778889 77765 55568899999999887553221                                           


Q ss_pred             -------------cCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCcc
Q 004203          189 -------------DFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREE  224 (768)
Q Consensus       189 -------------~h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~  224 (768)
                                   .+...+..++|+|++++++++..  +.+.+||..+.+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~  241 (426)
T d1hzua2         191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRL  241 (426)
T ss_dssp             ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEE
T ss_pred             EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccE
Confidence                         11223456889999998888873  3388888776654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.2e-16  Score=157.09  Aligned_cols=169  Identities=17%  Similarity=0.294  Sum_probs=135.5

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s  154 (768)
                      .....++.++.|+.|++||....    .+.+|...+..+.+  ++.+|++++.|+.|++||+++++.+..+.+|...+.+
T Consensus       145 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~  222 (342)
T d2ovrb2         145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG  222 (342)
T ss_dssp             ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred             cccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeE
Confidence            35567888999999999999865    46788877776665  6889999999999999999999999999999999988


Q ss_pred             EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec----CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCe
Q 004203          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPR  229 (768)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~----h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~  229 (768)
                      +.+++   ++|++++.|+.|++||+...+....+.    |...+.++.|+  ++++++++++ .|++||+++++......
T Consensus       223 ~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         223 MELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            87765   799999999999999999988777653    44566666654  5789999855 59999999987644111


Q ss_pred             E--eecCCCCeEEEEEccCCCeEEEEE
Q 004203          230 I--VLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       230 ~--l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      .  ..+|...|++++|+|++..+++++
T Consensus       298 ~~~~~~~~~~v~~v~~s~~~~~la~g~  324 (342)
T d2ovrb2         298 TLESGGSGGVVWRIRASNTKLVCAVGS  324 (342)
T ss_dssp             ECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred             cccCCCCCCCEEEEEECCCCCEEEEEe
Confidence            1  124677899999999998555443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.3e-16  Score=159.18  Aligned_cols=148  Identities=8%  Similarity=-0.048  Sum_probs=107.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~-------L~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (768)
                      .+...++..|++++.|++|++||+....       ..+|...|.+++|+|+ +.+|++|+.|++|++|++..+.......
T Consensus        17 l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~   96 (342)
T d1yfqa_          17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT   96 (342)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB
T ss_pred             EEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccc
Confidence            3444678899999999999999986541       2369999999999986 5689999999999999999888777776


Q ss_pred             cCCCCcEE-EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE----ec---CCCCeEEEEEcCCCCEEEEEEC-CeEEEE
Q 004203          147 GHRRTPWV-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS----RD---FYRPIASIAFHASGELLAVASG-HKLYIW  217 (768)
Q Consensus       147 gH~g~V~s-VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~----l~---h~~~V~svafSPDG~~LatgSd-d~I~IW  217 (768)
                      .+...+.. ..+.+ +...+++++.|+++++||++++.....    ..   .......+.+.+++..+++++. +.|++|
T Consensus        97 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  175 (342)
T d1yfqa_          97 NNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF  175 (342)
T ss_dssp             SCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEE
T ss_pred             cccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEE
Confidence            66555443 44555 889999999999999999865432211    11   1223445566666666666664 347777


Q ss_pred             EcCCCc
Q 004203          218 RYNMRE  223 (768)
Q Consensus       218 Dl~t~~  223 (768)
                      |++...
T Consensus       176 ~~~~~~  181 (342)
T d1yfqa_         176 RLPLCE  181 (342)
T ss_dssp             ESSCCT
T ss_pred             ecccCc
Confidence            765543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=1.2e-15  Score=166.95  Aligned_cols=170  Identities=13%  Similarity=0.022  Sum_probs=132.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE--EEEE---ecCCCCc
Q 004203           82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL---HGHRRTP  152 (768)
Q Consensus        82 ~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l---~gH~g~V  152 (768)
                      ..+++.+.+++|.+||..+.+    +..| ..+..++|||||++|++++.|++|++||+.+++.  +..+   .+|.+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            335788899999999999874    4455 4699999999999999999999999999988763  2333   3455556


Q ss_pred             EEEEEccCCCCE-EEEEeCCCeEEEEECCCCcEEEEec------------CCCCeEEEEEcCCCCEEEEEE--CCeEEEE
Q 004203          153 WVVRFHPLNPTI-IASGSLDHEVRLWNASTAECIGSRD------------FYRPIASIAFHASGELLAVAS--GHKLYIW  217 (768)
Q Consensus       153 ~sVafSP~dg~l-LaSgS~DgtVrLWDl~sg~~i~~l~------------h~~~V~svafSPDG~~LatgS--dd~I~IW  217 (768)
                      .++.|+| ||++ +++++.+++|+|||..+++++..+.            .......+.++|+|+.+++..  ++.|.+|
T Consensus       112 ~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         112 TSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             ECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            6667888 7776 5788889999999999999876642            345667899999999877766  3459999


Q ss_pred             EcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      |..+.+...  .....+...+..+.|+|||+++++++.
T Consensus       191 d~~~~~~~~--~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         191 DYTDLNNLK--TTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             ETTCSSEEE--EEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             EccCCCcce--EEEEcccCccccceECCCCCEEEEecc
Confidence            998765422  233456678999999999998887764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1e-15  Score=152.51  Aligned_cols=162  Identities=10%  Similarity=-0.010  Sum_probs=119.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE---EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 004203          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (768)
Q Consensus       103 L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~---l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (768)
                      +++|++.|++|+|+||+++|++++.|++|+|||++++..   +....+|.+.|.+++|+|+++.+|++|+.|++|++||+
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~   86 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence            567999999999999999999999999999999977543   23334799999999999956779999999999999999


Q ss_pred             CCCcEEEEec--CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeE-eec--CCCCeEEEEEccCCCeEEEE
Q 004203          180 STAECIGSRD--FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRI-VLR--TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       180 ~sg~~i~~l~--h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~-l~~--h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ..+.......  +........+.++...+++++.+ .+++||++.......... ...  .........+.+++..++.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (342)
T d1yfqa_          87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG  166 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeee
Confidence            9887766643  33344556677788888888854 599999976544221111 111  12344566777888877766


Q ss_pred             Ee-----eCCcCCCCc
Q 004203          254 AE-----VNDLDSSES  264 (768)
Q Consensus       254 ~s-----vwdl~sg~~  264 (768)
                      +.     +|+++....
T Consensus       167 ~~d~~i~~~~~~~~~~  182 (342)
T d1yfqa_         167 MNNSQVQWFRLPLCED  182 (342)
T ss_dssp             ESTTEEEEEESSCCTT
T ss_pred             cCCCcEEEEecccCcc
Confidence            54     666654443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=7.2e-16  Score=154.78  Aligned_cols=139  Identities=12%  Similarity=0.180  Sum_probs=113.0

Q ss_pred             CCCEEEEEeCC-CeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE-EEecCCCCc
Q 004203           80 ARRGLASWVEA-ESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTP  152 (768)
Q Consensus        80 ~g~~LvSgs~D-gsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~g~V  152 (768)
                      .+..++.+..+ +.|++|+....     ....|...|++++|+||+++|++++.|+.|++||+.+++... .+.+|...|
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v  208 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  208 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc
Confidence            44555555555 57999998643     234688899999999999999999999999999999988654 467899999


Q ss_pred             EEEEEccC---------CCCEEEEEeCCCeEEEEECCCC-cEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc
Q 004203          153 WVVRFHPL---------NPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRY  219 (768)
Q Consensus       153 ~sVafSP~---------dg~lLaSgS~DgtVrLWDl~sg-~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl  219 (768)
                      .+++|+|.         ++.++++|+.|++|++||++++ +.+..+ +|...|.+++|+|++. |++++ |+.|++||+
T Consensus       209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence            99999972         3568999999999999999874 445554 5899999999999875 55555 556999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.7e-14  Score=138.59  Aligned_cols=164  Identities=21%  Similarity=0.343  Sum_probs=119.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE----------
Q 004203           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL----------  145 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l----------  145 (768)
                      ++..|++++.|++|++||+.+.    .+.+|...|++++|  ++++|++++.|+.|++|++.++......          
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~  101 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL  101 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred             cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccc
Confidence            5789999999999999999876    47899999999987  5789999999999999999776433322          


Q ss_pred             ---------------------------------ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CC
Q 004203          146 ---------------------------------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FY  191 (768)
Q Consensus       146 ---------------------------------~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~  191 (768)
                                                       ..|...+..+.+.   ...+++++.|+.|++||+++++.+..+. +.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~  178 (293)
T d1p22a2         102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK  178 (293)
T ss_dssp             ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             cccccceeecccccceeEeeccccccccccccccccccccccceec---ccccccccCCCceeeecCCCCcEEEEEcccc
Confidence                                             2334444444443   3567788888888888888888777654 55


Q ss_pred             CCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          192 RPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       192 ~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..+..+.++  +..|++++. +.|++||+++.....   ....+...+..  +++++.+|++++.
T Consensus       179 ~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~v~~--~~~~~~~l~sg~~  236 (293)
T d1p22a2         179 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRC--IRFDNKRIVSGAY  236 (293)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEE--EECCSSEEEEEET
T ss_pred             cccccccCC--CCeEEEecCCCEEEEEecccceeee---eecccceeeee--ccccceEEEEEcC
Confidence            666666664  567777774 449999988776533   44455566654  5566776666554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.67  E-value=1.3e-14  Score=144.50  Aligned_cols=165  Identities=14%  Similarity=0.240  Sum_probs=135.0

Q ss_pred             EEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccC
Q 004203           85 ASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL  160 (768)
Q Consensus        85 vSgs~DgsIrlWd~~t~~L~---gH~~~VtslafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~  160 (768)
                      ++.+.|++|.+||+.++++.   .....+..++|+|||++|+ +++.++.|++||+.+++.+..+..+.. +..+.|++ 
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~-   83 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSP-   83 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECT-
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccc-
Confidence            46678999999999988432   2345688999999999875 566799999999999999999987765 68899999 


Q ss_pred             CCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEeecCCCC
Q 004203          161 NPT-IIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRRS  237 (768)
Q Consensus       161 dg~-lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~l~~h~~~  237 (768)
                      ++. +++++..++.+++||..+++....+.+......++|+|+|+.+++...  ..+.+|+..+.....    ...+...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  159 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN----TVSVGRS  159 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EEECCSS
T ss_pred             ccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceee----ecccCCC
Confidence            555 556677788999999999999999888888999999999998877763  349999998886533    3445567


Q ss_pred             eEEEEEccCCCeEEEEEe
Q 004203          238 LRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       238 V~sVaFSPDG~~LlaS~s  255 (768)
                      +..+.|+|+++.++++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~  177 (301)
T d1l0qa2         160 PKGIAVTPDGTKVYVANF  177 (301)
T ss_dssp             EEEEEECTTSSEEEEEET
T ss_pred             ceEEEeeccccceeeecc
Confidence            899999999998877654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=7.4e-15  Score=147.30  Aligned_cols=169  Identities=15%  Similarity=0.160  Sum_probs=125.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCC-C--CCCCCeEEEEECCCCCEEEEEeCCC-eEEEEeCCCCeEEEEEe-cCCCCcEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCPL-S--PPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLH-GHRRTPWVV  155 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~L-~--gH~~~VtslafSPDG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~-gH~g~V~sV  155 (768)
                      ...++....++.+.+|+...... .  .+...  ..+++++++.+++++.|+ .|++|++.+.+....+. .|.+.+.++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~  168 (287)
T d1pgua2          91 DGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI  168 (287)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred             CCceEEEeecccceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEE
Confidence            33444445566677777765521 1  12233  345677788888888765 79999998766655554 477889999


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--ecCCCCeEEEEEcCCC----------CEEEEEECC-eEEEEEcCCC
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASG----------ELLAVASGH-KLYIWRYNMR  222 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~h~~~V~svafSPDG----------~~LatgSdd-~I~IWDl~t~  222 (768)
                      +|+| ++.+|++++.|+.|++||+.+++....  ..|...|.+++|+|++          .+|++++.| .|++||+++.
T Consensus       169 ~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~  247 (287)
T d1pgua2         169 SISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  247 (287)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             Eecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence            9999 999999999999999999999887654  3578899999998754          589999855 5999999775


Q ss_pred             ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..  ......+|...|+++.|+|++. +++++.
T Consensus       248 ~~--~~~~~~~h~~~V~~v~~~~~~~-l~s~g~  277 (287)
T d1pgua2         248 MK--IIKALNAHKDGVNNLLWETPST-LVSSGA  277 (287)
T ss_dssp             TC--CEEETTSSTTCEEEEEEEETTE-EEEEET
T ss_pred             Ce--EEEEeCCCCCCeEEEEECCCCE-EEEEEC
Confidence            43  1234557999999999999875 666554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=2e-14  Score=144.95  Aligned_cols=141  Identities=15%  Similarity=0.163  Sum_probs=116.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCeEEEEEecCCC---
Q 004203           81 RRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRR---  150 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~g---  150 (768)
                      +.++++++.|++|++||.++.+      +..+...+.+++|+|||++++ +++.++.|++||+.+++.+..+..+..   
T Consensus         1 ~~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             CeEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence            3578999999999999999873      234556788999999999885 566799999999999999888876543   


Q ss_pred             --CcEEEEEccCCCCEEEEEe------------CCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEE
Q 004203          151 --TPWVVRFHPLNPTIIASGS------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI  216 (768)
Q Consensus       151 --~V~sVafSP~dg~lLaSgS------------~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~I  216 (768)
                        .+..++|+| +++.++.+.            .+..+.+||..+++....+.....+..++|+|||+++++++ +.+.+
T Consensus        81 ~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~  158 (337)
T d1pbyb_          81 VKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-RDLHV  158 (337)
T ss_dssp             EECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES-SSEEE
T ss_pred             ccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc-CCcce
Confidence              355789999 888887765            45789999999999999988888899999999999998875 44778


Q ss_pred             EEcCCCc
Q 004203          217 WRYNMRE  223 (768)
Q Consensus       217 WDl~t~~  223 (768)
                      ||..+.+
T Consensus       159 ~d~~~~~  165 (337)
T d1pbyb_         159 MDPEAGT  165 (337)
T ss_dssp             EETTTTE
T ss_pred             eeeecCc
Confidence            8887654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.6e-14  Score=138.63  Aligned_cols=157  Identities=20%  Similarity=0.375  Sum_probs=119.2

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 004203          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (768)
Q Consensus       103 L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg  182 (768)
                      +.+|...|+|++|  ||++|++|+.|++|+|||+++++++..+++|.+.|.+++|   ++++|++++.|+.|++|++..+
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSC
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec---ccceeecccccccccccccccc
Confidence            4568889998765  7999999999999999999999999999999999998887   5689999999999999999999


Q ss_pred             cEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----e
Q 004203          183 ECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----V  256 (768)
Q Consensus       183 ~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----v  256 (768)
                      ............. ..+.+....++++. ++.+.+||...............|...|..+.+.++.  +++.+.     .
T Consensus        86 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~d~~i~~  162 (293)
T d1p22a2          86 EMLNTLIHHCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKV  162 (293)
T ss_dssp             CEEEEECCCCSCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTE--EEEEETTSEEEE
T ss_pred             ccccccccccccc-ccccccccceeecccccceeEeeccccccccccccccccccccccceecccc--cccccCCCceee
Confidence            8877765444433 33455556666666 4559999998876544344556678888888876643  444332     6


Q ss_pred             CCcCCCCccee
Q 004203          257 NDLDSSESSLT  267 (768)
Q Consensus       257 wdl~sg~~~~~  267 (768)
                      |+++.++....
T Consensus       163 ~d~~~~~~~~~  173 (293)
T d1p22a2         163 WNTSTCEFVRT  173 (293)
T ss_dssp             EETTTCCEEEE
T ss_pred             ecCCCCcEEEE
Confidence            66665544333

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.53  E-value=3.8e-13  Score=135.88  Aligned_cols=194  Identities=12%  Similarity=0.051  Sum_probs=135.3

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCCC----C-CCCCCeEEEEECCCCCEEEE-EeCCCeEEEEeCCCCeEEEEEecCCC-
Q 004203           78 RDARRGLASWVEAESLHHLRPKYCPL----S-PPPRSTIAAAFSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHRR-  150 (768)
Q Consensus        78 ~d~g~~LvSgs~DgsIrlWd~~t~~L----~-gH~~~VtslafSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~gH~g-  150 (768)
                      +.++.+|++++.+++|.+||+.+.++    + .|...+.+++|+|||+++++ +..++.|++||+.+++.+..+..... 
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~   84 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP   84 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc
Confidence            46788999999999999999998843    2 46677899999999998754 55789999999999998877754322 


Q ss_pred             -----CcEEEEEccCCCCEEEEEe------------CCCeEEEE------------------------------------
Q 004203          151 -----TPWVVRFHPLNPTIIASGS------------LDHEVRLW------------------------------------  177 (768)
Q Consensus       151 -----~V~sVafSP~dg~lLaSgS------------~DgtVrLW------------------------------------  177 (768)
                           .+..++|+| |+++++.++            .+..+.+|                                    
T Consensus        85 ~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (346)
T d1jmxb_          85 GEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP  163 (346)
T ss_dssp             TEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESS
T ss_pred             cccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCC
Confidence                 345678888 766665443            23333443                                    


Q ss_pred             -----ECCCCcEEEEe----------------------------------------------------------------
Q 004203          178 -----NASTAECIGSR----------------------------------------------------------------  188 (768)
Q Consensus       178 -----Dl~sg~~i~~l----------------------------------------------------------------  188 (768)
                           |+.+++.+..+                                                                
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d1jmxb_         164 DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH  243 (346)
T ss_dssp             SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred             cceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE
Confidence                 43333222211                                                                


Q ss_pred             -----cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCC
Q 004203          189 -----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VND  258 (768)
Q Consensus       189 -----~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwd  258 (768)
                           .+...+..+.+++++.+++....+.|++||+.+++...    ...+...+.+++|+|||+++++++.     +||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~----~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D  319 (346)
T d1jmxb_         244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK----AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFN  319 (346)
T ss_dssp             EEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEE----EEECSSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             EEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEE----EEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence                 12223445677777777777777889999998886543    3344567999999999999888764     677


Q ss_pred             cCCCCcceeEeecCCccc
Q 004203          259 LDSSESSLTLATSPGYWR  276 (768)
Q Consensus       259 l~sg~~~~~L~t~~G~~~  276 (768)
                      +.+.+....+....|...
T Consensus       320 ~~t~~~i~~i~~p~g~~~  337 (346)
T d1jmxb_         320 PDTLEKVKNIKLPGGDMS  337 (346)
T ss_dssp             TTTTEEEEEEECSSSCCB
T ss_pred             CccCCEEEEEECCCCCcc
Confidence            776665556655555543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=8.6e-13  Score=133.39  Aligned_cols=170  Identities=11%  Similarity=0.065  Sum_probs=125.8

Q ss_pred             EEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEE---ecCCCCcE
Q 004203           84 LASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVL---HGHRRTPW  153 (768)
Q Consensus        84 LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l---~gH~g~V~  153 (768)
                      ++++++|++|++|++...      +...|.+.+.+++|||||++|++++ .|+.|++|++........+   ..+...+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            467789999999998643      2337889999999999999996655 4899999999765433222   23445677


Q ss_pred             EEEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEE---ecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccC
Q 004203          154 VVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSS  227 (768)
Q Consensus       154 sVafSP~dg~lLaSgS~-DgtVrLWDl~sg~~i~~---l~h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~  227 (768)
                      .++|+| |+++|++++. ++.|.+|+.........   ..+...+.++.|+||++++++++.  +.|.+|+.........
T Consensus        87 ~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          87 HISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             EEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             EEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            899999 8888888775 66899999887665443   346667889999999999988884  3499999877543220


Q ss_pred             ---CeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          228 ---PRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       228 ---~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                         ...........+.++|++++.++....
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeec
Confidence               011222346678999999999877654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=1.7e-12  Score=141.49  Aligned_cols=136  Identities=10%  Similarity=-0.019  Sum_probs=102.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE--EEec----CC
Q 004203          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI--GSRD----FY  191 (768)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i--~~l~----h~  191 (768)
                      +.-++++.+.|++|.|||.++++++..+..+. .+..++|+| ||+++++++.|++|++||+.+++..  ..+.    +.
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~  108 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  108 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence            33345899999999999999999999998764 599999999 9999999999999999999987643  3333    33


Q ss_pred             CCeEEEEEcCCCCEEEE-EE-CCeEEEEEcCCCccccCC--------eEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          192 RPIASIAFHASGELLAV-AS-GHKLYIWRYNMREETSSP--------RIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       192 ~~V~svafSPDG~~Lat-gS-dd~I~IWDl~t~~~~~~~--------~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +.+.+.+|+|||++|++ ++ ++.|++||..+++.....        .....+......+.++|+|..++++..
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence            44555677889998754 44 456999999988754310        011234456778899999998776653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.39  E-value=3e-11  Score=119.76  Aligned_cols=177  Identities=16%  Similarity=0.238  Sum_probs=136.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEE-EeCCCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203           81 RRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa  156 (768)
                      ...+++...++.+.+|+....+   ...+...+.++.|+|||+.++. +..+..+.+|+..+++.+..+..+. .+..+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  164 (301)
T d1l0qa2          86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIA  164 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEE
T ss_pred             ccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC-CceEEE
Confidence            3455566778889999998763   2245667889999999998764 5568899999999999888887554 478899


Q ss_pred             EccCCCCEEEEEeC-CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-C---CeEEEEEcCCCccccCCeEe
Q 004203          157 FHPLNPTIIASGSL-DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-G---HKLYIWRYNMREETSSPRIV  231 (768)
Q Consensus       157 fSP~dg~lLaSgS~-DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-d---d~I~IWDl~t~~~~~~~~~l  231 (768)
                      ++| ++..++++.. ++.+.+|+....+.............++|+++++.++++. +   +.|++||+.+.+...    .
T Consensus       165 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~----~  239 (301)
T d1l0qa2         165 VTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA----R  239 (301)
T ss_dssp             ECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE----E
T ss_pred             eec-cccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE----E
Confidence            999 7766666655 4678899988888888887778888999999999887665 3   349999999887533    2


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCC
Q 004203          232 LRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSE  263 (768)
Q Consensus       232 ~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~  263 (768)
                      ..+...+.+++|+|||+++++++.      +||+.+++
T Consensus       240 ~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         240 IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            334567899999999998866553      56665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.38  E-value=3.8e-12  Score=136.89  Aligned_cols=134  Identities=10%  Similarity=0.018  Sum_probs=100.8

Q ss_pred             ECCCCC--EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--e--
Q 004203          115 FSPDGK--TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--R--  188 (768)
Q Consensus       115 fSPDG~--~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l--  188 (768)
                      ++.|.+  ++++.+.|++|+|||+.+++.+..+..|. .+..++|+| ||+++++++.|++|++||+.+++....  +  
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~  103 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI  103 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeC
Confidence            444433  55778889999999999999999998775 589999999 999999999999999999999876443  2  


Q ss_pred             --cCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEeec-----------CCCCeEEEEEccCCCeEEEE
Q 004203          189 --DFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLR-----------TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       189 --~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l~~-----------h~~~V~sVaFSPDG~~LlaS  253 (768)
                        .|...+.+++|+|||++|++++  ++.+.+||..+.....   ....           +......+.+++++..++.+
T Consensus       104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ---IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE---EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeE---EeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence              2444556677889999887765  4559999998876533   2222           23445566666666655544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.34  E-value=6.3e-11  Score=118.75  Aligned_cols=184  Identities=17%  Similarity=0.106  Sum_probs=131.7

Q ss_pred             EEecCCCEE-EEEeCCCeEEEEeCCCCCC----CCC-----CCCeEEEEECCCCCEEEEEe------------CCCeEEE
Q 004203           76 AGRDARRGL-ASWVEAESLHHLRPKYCPL----SPP-----PRSTIAAAFSPDGKTLASTH------------GDHTVKI  133 (768)
Q Consensus        76 a~~d~g~~L-vSgs~DgsIrlWd~~t~~L----~gH-----~~~VtslafSPDG~~LaSgS------------~DgtVrV  133 (768)
                      +...+++.+ +++..++.|.+||+.++++    ..+     ...+..++|+||+++++++.            .+..+.+
T Consensus        40 ~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~  119 (337)
T d1pbyb_          40 MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL  119 (337)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred             EECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceee
Confidence            344566665 6778899999999988742    222     33456899999999998776            3678999


Q ss_pred             EeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-------------------------
Q 004203          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-------------------------  188 (768)
Q Consensus       134 WDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-------------------------  188 (768)
                      ||..+++....+..+ ..+..++|+| +++++++++.+  +.+||..+++....+                         
T Consensus       120 ~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (337)
T d1pbyb_         120 YDAETLSRRKAFEAP-RQITMLAWAR-DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS  195 (337)
T ss_dssp             EETTTTEEEEEEECC-SSCCCEEECT-TSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred             ccccCCeEEEecccc-CCceEEEEcC-CCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecccccc
Confidence            999999998888754 4578899999 88888887644  677887766543321                         


Q ss_pred             ------------------------------------------cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc
Q 004203          189 ------------------------------------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETS  226 (768)
Q Consensus       189 ------------------------------------------~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~  226 (768)
                                                                .+...+..++++|++.+++.. ++.|++||+.+++...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~  274 (337)
T d1pbyb_         196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIK  274 (337)
T ss_dssp             TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEE
T ss_pred             ceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEE
Confidence                                                      122234456777888777654 5779999999987644


Q ss_pred             CCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (768)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L  268 (768)
                          ...+...+.+++|+|||+++++++.     +||..+.+....+
T Consensus       275 ----~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         275 ----RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             ----EEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             ----EEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence                3345678899999999998887654     5566554433333

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.32  E-value=1.3e-11  Score=124.27  Aligned_cols=138  Identities=11%  Similarity=0.106  Sum_probs=107.9

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-cCCCCcEEEEEccCCCCEE-EEEeCCCeEEEEECCCCcEEEEecC
Q 004203          113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDF  190 (768)
Q Consensus       113 lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-gH~g~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~sg~~i~~l~h  190 (768)
                      ++|++++++|++++.|++|.+||+++++.+..++ .|...+..++|+| |++++ +++..++.|++||+.+++.+..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            5789999999999999999999999999999887 4566788999999 77765 5667889999999999998877542


Q ss_pred             C-------CCeEEEEEcCCCCEEEEEE-------------CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203          191 Y-------RPIASIAFHASGELLAVAS-------------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       191 ~-------~~V~svafSPDG~~LatgS-------------dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L  250 (768)
                      .       ..+..++|+|||++|+++.             +..+.+||..+++... ..........+..+.++++++.+
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEEECCSSCCCEEECTTSCEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee-EEEeeeccCceEEEEecCCCEEE
Confidence            2       2356799999999988775             2348999988876544 22333345567778888888755


Q ss_pred             EE
Q 004203          251 LL  252 (768)
Q Consensus       251 la  252 (768)
                      +.
T Consensus       160 ~~  161 (346)
T d1jmxb_         160 VA  161 (346)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.15  E-value=5.3e-10  Score=120.78  Aligned_cols=141  Identities=11%  Similarity=0.102  Sum_probs=110.9

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC-----CCCcEEEEEccCCCCEEEEEeC---------CCeEEEE
Q 004203          112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-----RRTPWVVRFHPLNPTIIASGSL---------DHEVRLW  177 (768)
Q Consensus       112 slafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-----~g~V~sVafSP~dg~lLaSgS~---------DgtVrLW  177 (768)
                      .+.|.+|+++++.  .|+.|++||+.+++....+..+     ...|.++.||| |+++|++++.         ++.++||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEE
Confidence            5779999988764  5788999999999987766544     46799999999 9999988753         4678999


Q ss_pred             ECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCe------Eeec---------CCCCeEEEE
Q 004203          178 NASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPR------IVLR---------TRRSLRAVH  242 (768)
Q Consensus       178 Dl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~------~l~~---------h~~~V~sVa  242 (768)
                      |+.+++......+...+..+.|+|||+.||+..++.+++|+..+++......      ...+         .......+.
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            9999987776778889999999999999999999999999998876533110      0000         123346688


Q ss_pred             EccCCCeEEEEEe
Q 004203          243 FHPHAAPLLLTAE  255 (768)
Q Consensus       243 FSPDG~~LlaS~s  255 (768)
                      |||||++|++...
T Consensus       178 wSPDGk~ia~~~~  190 (470)
T d2bgra1         178 WSPNGTFLAYAQF  190 (470)
T ss_dssp             ECTTSSEEEEEEE
T ss_pred             ECCCCCccceeEe
Confidence            9999999888654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.13  E-value=1.5e-08  Score=104.08  Aligned_cols=212  Identities=8%  Similarity=-0.052  Sum_probs=118.9

Q ss_pred             CCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEeCCCCeEEEEEecCC------
Q 004203           90 AESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHG----------DHTVKIIDCQTGSCLKVLHGHR------  149 (768)
Q Consensus        90 DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~----------DgtVrVWDl~tg~~l~~l~gH~------  149 (768)
                      ++.|.+||..+++    +..+.  ...++|+|||++|++++.          ++.|.+||..+++.+..+..+.      
T Consensus        46 ~~~v~v~D~~tg~~~~~~~~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~  123 (373)
T d2madh_          46 IIQQWVLDAGSGSILGHVNGGF--LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV  123 (373)
T ss_pred             CceEEEEECCCCCEEEEEeCCC--CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEe
Confidence            4567777777663    22333  236788888888877643          5678888888776554432221      


Q ss_pred             -----------------------------------------CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 004203          150 -----------------------------------------RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (768)
Q Consensus       150 -----------------------------------------g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l  188 (768)
                                                               ..+.++.|+|++...+++.+.|+++.+||...++.....
T Consensus       124 ~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~  203 (373)
T d2madh_         124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL  203 (373)
T ss_pred             ccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE
Confidence                                                     123345566633445567788888888888887765543


Q ss_pred             c-------CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecC----------CCCeEEEEEccCCCeEE
Q 004203          189 D-------FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRT----------RRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       189 ~-------h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h----------~~~V~sVaFSPDG~~Ll  251 (768)
                      .       .......+.+++++.+++.+.++++++|+........ .......          ......+.+++++..++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  282 (373)
T d2madh_         204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN-KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEE-EEeeccccCcEEeeeeccCcceeeEEecCCCeEE
Confidence            2       1123345667777777776667779999987765322 1111111          22345567777777655


Q ss_pred             EEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203          252 LTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (768)
Q Consensus       252 aS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~  321 (768)
                      ........       ....      .....+.+++..++.......    .......+.|||||+++++.
T Consensus       283 ~~~~~~~~-------~~~~------~~~~~v~~~d~~t~~~~~~~~----~~~~~~~~a~spDG~~~l~v  335 (373)
T d2madh_         283 LLTSEQSA-------WKLH------AAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYA  335 (373)
T ss_pred             EecCCCce-------EEee------cCCCeEEEEECCCCcEEEEec----CCCCeeEEEECCCCCEEEEE
Confidence            43321111       0000      011245555544443322221    12234578999999986553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=3e-10  Score=114.36  Aligned_cols=133  Identities=9%  Similarity=0.071  Sum_probs=98.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEEE--ecCCCCcEEEEEccCCCCEEEE-EeCCCeEEEEECCCCcEEE----EecCCCC
Q 004203          121 TLASTHGDHTVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTIIAS-GSLDHEVRLWNASTAECIG----SRDFYRP  193 (768)
Q Consensus       121 ~LaSgS~DgtVrVWDl~tg~~l~~l--~gH~g~V~sVafSP~dg~lLaS-gS~DgtVrLWDl~sg~~i~----~l~h~~~  193 (768)
                      .+++++.|++|++||+++...+..+  ..|.+.+..++|+| |+++|++ +..|+.|++|++.......    .......
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            3467778999999999765433323  35788899999999 8887755 4558999999998654322    2335556


Q ss_pred             eEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          194 IASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       194 V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      +..++|+|||++|++++.  +.+.+|+........ ......+...+.++.|+||+++++....
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG-VVDVVEGLDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE-EEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeecccccccee-cccccCCCccceEEEeeecceeeecccc
Confidence            778999999999999984  349999987765433 2334456778899999999998776654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.08  E-value=2e-09  Score=116.19  Aligned_cols=120  Identities=13%  Similarity=0.132  Sum_probs=97.5

Q ss_pred             eCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeC---------CCeEEEEeCCCCeEEEEEecCC
Q 004203           88 VEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGSCLKVLHGHR  149 (768)
Q Consensus        88 s~DgsIrlWd~~t~---------~L~gH~~~VtslafSPDG~~LaSgS~---------DgtVrVWDl~tg~~l~~l~gH~  149 (768)
                      .+++.|.+||+.++         ++..|...|.++.|||||++|+.+++         ++.+++||+++++ +..+..+.
T Consensus        33 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~  111 (470)
T d2bgra1          33 KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIP  111 (470)
T ss_dssp             ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCC
T ss_pred             EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCC
Confidence            45778899998876         45677789999999999999998854         5788999999987 45677888


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-------------------CCCCeEEEEEcCCCCEEEEEE
Q 004203          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------------------FYRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-------------------h~~~V~svafSPDG~~LatgS  210 (768)
                      ..+..+.||| ||+.+|+.. ++.+++|+..+++..+...                   ..+....+.|+|||+.|++..
T Consensus       112 ~~~~~~~~SP-DG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         112 NNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             TTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             cccccccccc-CcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence            8999999999 999999864 6789999999987765432                   122345688999999999987

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.06  E-value=1.1e-08  Score=104.01  Aligned_cols=99  Identities=10%  Similarity=0.014  Sum_probs=72.7

Q ss_pred             CCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEeCCCCeEEEEEecCCC------
Q 004203           89 EAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGHRR------  150 (768)
Q Consensus        89 ~DgsIrlWd~~t~~L~--gH~~~VtslafSPDG~~LaSgS----------~DgtVrVWDl~tg~~l~~l~gH~g------  150 (768)
                      .+..|.+||..++++.  -+.+.+..++|||||++|++.+          .|+.|++||+.+++.+..+..+..      
T Consensus        26 ~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~  105 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG  105 (355)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecC
Confidence            4567999999887421  1122334799999999998654          478999999999998887764432      


Q ss_pred             -CcEEEEEccCCCCEEEEEe--CCCeEEEEECCCCcEEEEe
Q 004203          151 -TPWVVRFHPLNPTIIASGS--LDHEVRLWNASTAECIGSR  188 (768)
Q Consensus       151 -~V~sVafSP~dg~lLaSgS--~DgtVrLWDl~sg~~i~~l  188 (768)
                       ....+.|+| +++.++.++  .+..+.+||..+++.+..+
T Consensus       106 ~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d2bbkh_         106 TYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRML  145 (355)
T ss_dssp             CCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEE
Confidence             345689999 888777664  4668999999998776554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=7.9e-08  Score=94.70  Aligned_cols=213  Identities=13%  Similarity=0.119  Sum_probs=136.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC-CC--eEEE
Q 004203          103 LSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DH--EVRL  176 (768)
Q Consensus       103 L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~-Dg--tVrL  176 (768)
                      +..+...+...+|||||++||.....   ..+.+.+..++... .+..+.+......|+| +++.++.... ++  .+..
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecC-CCCeeeEeeecCCccceee
Confidence            44456778899999999999987653   35888888777654 4445677788899999 7777776554 33  3444


Q ss_pred             EECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCe--EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       177 WDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~--I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla  252 (768)
                      +.....................++++++.+...+  ++.  |.+.++......    .+...........|+|+++.++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         112 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ----RITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             EETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----ECCCSSSEEEEEEECTTSSEEEE
T ss_pred             cccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce----eeecccccccccccccccceeEE
Confidence            4444444444455556666778899988777666  233  777777665432    34445667788899999998887


Q ss_pred             EEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceE
Q 004203          253 TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRT  332 (768)
Q Consensus       253 S~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~  332 (768)
                      ........                    .+.+.+...... .+..    .......|.|||||++|+|.... ..+..++
T Consensus       188 ~~~~~~~~--------------------~i~~~~~~~~~~-~~~~----~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l~  241 (269)
T d2hqsa1         188 VSSNGGQQ--------------------HIAKQDLATGGV-QVLS----STFLDETPSLAPNGTMVIYSSSQ-GMGSVLN  241 (269)
T ss_dssp             EEECSSCE--------------------EEEEEETTTCCE-EECC----CSSSCEEEEECTTSSEEEEEEEE-TTEEEEE
T ss_pred             EeecCCce--------------------eeeEeecccccc-eEee----cCccccceEECCCCCEEEEEEcC-CCCcEEE
Confidence            76532111                    111111111111 1111    11233579999999999997543 3355678


Q ss_pred             EeccCCCceeeeecc
Q 004203          333 QQSLRSSSSVRLLTY  347 (768)
Q Consensus       333 ~~~~~ss~~~rl~~~  347 (768)
                      ..+++++..++|+..
T Consensus       242 ~~~~dg~~~~~lt~~  256 (269)
T d2hqsa1         242 LVSTDGRFKARLPAT  256 (269)
T ss_dssp             EEETTSCCEEECCCS
T ss_pred             EEECCCCCEEEEeCC
Confidence            888888877766553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.98  E-value=1.9e-08  Score=103.36  Aligned_cols=160  Identities=9%  Similarity=0.005  Sum_probs=112.1

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCeEEEEEec--------------
Q 004203           83 GLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHG--------------  147 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~~L~gH~~~VtslafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~g--------------  147 (768)
                      .++.+..++.+.+|+....+...+.....++.|+|+|+.+ ++.+.|+++.+||..+++.......              
T Consensus       140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (373)
T d2madh_         140 LFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             EEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeE
Confidence            3445556777888888887777777788899999988755 5778899999999876544332210              


Q ss_pred             ------------CC---------------------------------CCcEEEEEccCCCCEE----------EEEeCCC
Q 004203          148 ------------HR---------------------------------RTPWVVRFHPLNPTII----------ASGSLDH  172 (768)
Q Consensus       148 ------------H~---------------------------------g~V~sVafSP~dg~lL----------aSgS~Dg  172 (768)
                                  ..                                 .....+.+++ ++..+          +....++
T Consensus       220 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~  298 (373)
T d2madh_         220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             EECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCceEEeecCCC
Confidence                        00                                 0011234444 33332          3345567


Q ss_pred             eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEE--EEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccC
Q 004203          173 EVRLWNASTAECIGSRDFYRPIASIAFHASGELL--AVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH  246 (768)
Q Consensus       173 tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~L--atgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPD  246 (768)
                      .+.+||+.+++.+..+.+...+..++|+|||+.+  ++++ ++.|++||+.+++...   .+..+....+.|++.++
T Consensus       299 ~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~---~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         299 EVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ---STVELGSGPQVLSVMNE  372 (373)
T ss_pred             eEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE---EECCCCCCCcEEEEecC
Confidence            8999999999999999888999999999999853  3444 4459999999998654   55567777778777654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.73  E-value=1.8e-07  Score=97.16  Aligned_cols=115  Identities=9%  Similarity=-0.153  Sum_probs=79.9

Q ss_pred             eEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEeCCCCeEEEEEecCCC-------
Q 004203           92 SLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGHRR-------  150 (768)
Q Consensus        92 sIrlWd~~t~~L----~gH~~~VtslafSPDG~~LaSgS----------~DgtVrVWDl~tg~~l~~l~gH~g-------  150 (768)
                      .|.+||..+.++    ..+...  .++|+|||++|++.+          .|+.|++||..+++.+..+..+..       
T Consensus        47 ~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~  124 (368)
T d1mdah_          47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccC
Confidence            456667776632    233333  589999999999765          377899999999999888765432       


Q ss_pred             CcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEEEEecCCC--------CeEEEEEcCCCCEEEEE
Q 004203          151 TPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFYR--------PIASIAFHASGELLAVA  209 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~sg~~i~~l~h~~--------~V~svafSPDG~~Latg  209 (768)
                      ....++|+| |+++++.+. .++.+.+||+.+++....+....        ....+.+++||+.++..
T Consensus       125 ~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~  191 (368)
T d1mdah_         125 RVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             CTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEE
T ss_pred             CccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEE
Confidence            244689999 888777665 57899999999998877754222        22334555666544443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.68  E-value=3.1e-08  Score=100.57  Aligned_cols=139  Identities=17%  Similarity=0.078  Sum_probs=99.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE--EEEecCC----------CCcEEEEEccCCCCEEEEEeCC-
Q 004203          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHR----------RTPWVVRFHPLNPTIIASGSLD-  171 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~----------g~V~sVafSP~dg~lLaSgS~D-  171 (768)
                      .+...+....+++++..++.++.++.+++|++.+++..  .....+.          .....+++++ ++..++....+ 
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~  270 (355)
T d2bbkh_         192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQR  270 (355)
T ss_dssp             TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEEC
T ss_pred             eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccC
Confidence            44555667788889999999999999999999887542  2222221          1234578888 77766655433 


Q ss_pred             ---------CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCE-EEEEE--CCeEEEEEcCCCccccCCeEeecCCCCeE
Q 004203          172 ---------HEVRLWNASTAECIGSRDFYRPIASIAFHASGEL-LAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLR  239 (768)
Q Consensus       172 ---------gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~-LatgS--dd~I~IWDl~t~~~~~~~~~l~~h~~~V~  239 (768)
                               ..|.+||..+++.+..+.+...+.+++|+|||+. |++.+  ++.|++||+.+++...   .+..+.....
T Consensus       271 ~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~---~i~~~G~~p~  347 (355)
T d2bbkh_         271 DEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR---SVNQLGHGPQ  347 (355)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE---EECCCCSSCC
T ss_pred             CceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEE---EEeCcCCCcc
Confidence                     3799999999999988887777899999999983 44433  4569999999998644   4444555556


Q ss_pred             EEEEccCC
Q 004203          240 AVHFHPHA  247 (768)
Q Consensus       240 sVaFSPDG  247 (768)
                      .|.+.++|
T Consensus       348 ~i~~~d~~  355 (355)
T d2bbkh_         348 VITTADMG  355 (355)
T ss_dssp             EEECCCCC
T ss_pred             EEEeCCCC
Confidence            66665543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.67  E-value=1.2e-07  Score=98.45  Aligned_cols=160  Identities=7%  Similarity=-0.079  Sum_probs=95.6

Q ss_pred             eCCCeEEEEeCCCCCC----CCC-------CCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEecCCCCc---
Q 004203           88 VEAESLHHLRPKYCPL----SPP-------PRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTP---  152 (768)
Q Consensus        88 s~DgsIrlWd~~t~~L----~gH-------~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~g~V---  152 (768)
                      ..|+.|++||..+.+.    ..|       ......++|+|||++|+++. .++.|.+||+.+++.+..+..+....   
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  172 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP  172 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEE
T ss_pred             ccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEcc
Confidence            4577899999987632    111       12234689999999998876 57999999999999888876554322   


Q ss_pred             ----EEEEEccCCCCEEEEEe------------------------------------CCCeEEEEECCCCcEEEEec---
Q 004203          153 ----WVVRFHPLNPTIIASGS------------------------------------LDHEVRLWNASTAECIGSRD---  189 (768)
Q Consensus       153 ----~sVafSP~dg~lLaSgS------------------------------------~DgtVrLWDl~sg~~i~~l~---  189 (768)
                          ..+.+++ |+.+++...                                    .++.++++|+..++......   
T Consensus       173 ~~~~~~v~~~~-Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (368)
T d1mdah_         173 GAAATHYLGSC-PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDG  251 (368)
T ss_dssp             EETTEEECCCC-TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCS
T ss_pred             CCCceEEEEcC-CCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeeccc
Confidence                1223333 222222211                                    11223333333322221110   


Q ss_pred             ----------CCCCeEEEEEcCCCCEEEEEE--C--------CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCe
Q 004203          190 ----------FYRPIASIAFHASGELLAVAS--G--------HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP  249 (768)
Q Consensus       190 ----------h~~~V~svafSPDG~~LatgS--d--------d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~  249 (768)
                                .......+++++++..+++..  +        ..|.+||..+++...    ...+...+.+++|+|||+.
T Consensus       252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~----~~~~~~~~~~~a~spDG~~  327 (368)
T d1mdah_         252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG----PISNGHDSDAIIAAQDGAS  327 (368)
T ss_dssp             SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE----CCEEEEEECEEEECCSSSC
T ss_pred             ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE----EecCCCceeEEEECCCCCE
Confidence                      001123578899998776654  1        128899999887543    2233457889999999986


Q ss_pred             EEE
Q 004203          250 LLL  252 (768)
Q Consensus       250 Lla  252 (768)
                      ++.
T Consensus       328 ~ly  330 (368)
T d1mdah_         328 DNY  330 (368)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.3e-06  Score=95.64  Aligned_cols=120  Identities=9%  Similarity=-0.014  Sum_probs=83.7

Q ss_pred             CCCeEEEEeCCCCC----CC---CCCCCeEEEEECCCCCEEEEEeC---------CCeEEEEeCCCCeEEEEEe--cCCC
Q 004203           89 EAESLHHLRPKYCP----LS---PPPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGSCLKVLH--GHRR  150 (768)
Q Consensus        89 ~DgsIrlWd~~t~~----L~---gH~~~VtslafSPDG~~LaSgS~---------DgtVrVWDl~tg~~l~~l~--gH~g  150 (768)
                      .++.|.+||+.+++    +.   -....+....|||||++++...+         .+.+.+||+.+++......  ....
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~  114 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA  114 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCcc
Confidence            45567777776552    11   12336778899999999887643         5789999999987544322  2234


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCC-----------------CeEEEEEcCCCCEEEEEE
Q 004203          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYR-----------------PIASIAFHASGELLAVAS  210 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~--h~~-----------------~V~svafSPDG~~LatgS  210 (768)
                      .+....||| ||+.+|... ++.|++.+..+++.++...  ...                 .-..+-|+|||++||+..
T Consensus       115 ~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         115 KLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             CCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            456689999 888888876 5679999988876655432  111                 124678999999999886

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=2.4e-05  Score=76.30  Aligned_cols=147  Identities=16%  Similarity=0.140  Sum_probs=96.8

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeC-CC--eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC--eEEEE
Q 004203          103 LSPPPRSTIAAAFSPDGKTLASTHG-DH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH--EVRLW  177 (768)
Q Consensus       103 L~gH~~~VtslafSPDG~~LaSgS~-Dg--tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg--tVrLW  177 (768)
                      +..+........|+|||+.++.... ++  .+..+........... ..........++++....+++...++  .|.+.
T Consensus        78 ~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~  156 (269)
T d2hqsa1          78 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  156 (269)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeee-eccccccccccccccccceecccccCCceEeee
Confidence            4567788899999999999987665 22  2333333333333333 33444455677883444445555555  57777


Q ss_pred             ECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-C-e--EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          178 NASTAECIGSRDFYRPIASIAFHASGELLAVASG-H-K--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       178 Dl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d-~--I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ++..+................|+|+++.++..+. + .  |.+.|...+..     ....+........|||||++|+..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~p~~SPDG~~i~f~  231 (269)
T d2hqsa1         157 NINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-----QVLSSTFLDETPSLAPNGTMVIYS  231 (269)
T ss_dssp             ETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-----EECCCSSSCEEEEECTTSSEEEEE
T ss_pred             ecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc-----eEeecCccccceEECCCCCEEEEE
Confidence            8877766666666677788899999999888773 3 2  55555444432     344455677889999999999887


Q ss_pred             Ee
Q 004203          254 AE  255 (768)
Q Consensus       254 ~s  255 (768)
                      +.
T Consensus       232 s~  233 (269)
T d2hqsa1         232 SS  233 (269)
T ss_dssp             EE
T ss_pred             Ec
Confidence            65

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=4.4e-06  Score=91.34  Aligned_cols=139  Identities=11%  Similarity=0.095  Sum_probs=98.8

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC---CCcEEEEEccCCCCEEEEEe---------CCCeEEEEECC
Q 004203          113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR---RTPWVVRFHPLNPTIIASGS---------LDHEVRLWNAS  180 (768)
Q Consensus       113 lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~---g~V~sVafSP~dg~lLaSgS---------~DgtVrLWDl~  180 (768)
                      ..|.+|+.+++. ..++.|.+||+.+++....+....   -.+....||| |++.++...         ..+.+.++|+.
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            358888877653 557899999999988755555433   2466778999 888877754         34689999999


Q ss_pred             CCcEEEEec---CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCC-----------------CeEE
Q 004203          181 TAECIGSRD---FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRR-----------------SLRA  240 (768)
Q Consensus       181 sg~~i~~l~---h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~-----------------~V~s  240 (768)
                      +++......   ....+....|+|||+.||...++.|++.+...+...+  ....+...                 .-.+
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~--lt~~g~~~~i~nG~~d~vyeee~~~~~~a  177 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR--VVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE--EECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEE--EecccCcceeeccccchhhhhhhccccce
Confidence            987655432   2345667899999999999999999999887765432  11111111                 1257


Q ss_pred             EEEccCCCeEEEEEe
Q 004203          241 VHFHPHAAPLLLTAE  255 (768)
Q Consensus       241 VaFSPDG~~LlaS~s  255 (768)
                      +-|||||++|++...
T Consensus       178 ~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         178 HWWSPDGTRLAYAAI  192 (465)
T ss_dssp             EEECTTSSEEEEEEE
T ss_pred             EEECCCCCeEEEEEe
Confidence            789999999988653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.33  E-value=1.8e-05  Score=80.37  Aligned_cols=173  Identities=9%  Similarity=0.070  Sum_probs=116.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eEEEEE-ecCCCC
Q 004203           77 GRDARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVL-HGHRRT  151 (768)
Q Consensus        77 ~~d~g~~LvSgs~DgsIrlWd~~t~--~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l-~gH~g~  151 (768)
                      ...++..+++...+++|..|+....  .+......+.+++|++||+++++...++.+.+|+....  ...... ......
T Consensus        35 v~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (302)
T d2p4oa1          35 SAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIF  114 (302)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSC
T ss_pred             ECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccc
Confidence            3445667777777888888886644  34455678999999999999998888888888886543  222222 223456


Q ss_pred             cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------C--CCCeEEEEEcCCCCEEEEEE--CCeEEEEE
Q 004203          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------F--YRPIASIAFHASGELLAVAS--GHKLYIWR  218 (768)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---------h--~~~V~svafSPDG~~LatgS--dd~I~IWD  218 (768)
                      .+.+.+.+ +++++++-+.++.++.+|...+.......         .  ......+.++  +..++.+.  .+.|+.++
T Consensus       115 ~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~  191 (302)
T d2p4oa1         115 LNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIP  191 (302)
T ss_dssp             EEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             cceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEecc
Confidence            78899999 89999888889999999998875433221         1  1234555554  55666655  44588888


Q ss_pred             cCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      +......... ...........++|+++|+.+++.
T Consensus       192 ~~~~~~~~~~-~~~~~~~~pdgia~d~dG~l~va~  225 (302)
T d2p4oa1         192 VDSTDKPGEP-EIFVEQTNIDDFAFDVEGNLYGAT  225 (302)
T ss_dssp             BCTTSCBCCC-EEEEESCCCSSEEEBTTCCEEEEC
T ss_pred             cccccccccc-ccccCCCCCcceEECCCCCEEEEE
Confidence            8765443322 222234456789999999855543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.32  E-value=1.9e-06  Score=94.11  Aligned_cols=105  Identities=12%  Similarity=0.000  Sum_probs=80.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEe-cCCCCcEEEEEccCCCC--EEEEEeCCC---------
Q 004203          106 PPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLH-GHRRTPWVVRFHPLNPT--IIASGSLDH---------  172 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~-gH~g~V~sVafSP~dg~--lLaSgS~Dg---------  172 (768)
                      |........++|||++|++.. .+..|.++|++++++...+. .+...+..++|+| +++  +++..+.+.         
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccc
Confidence            444566666789999997665 58899999999999888775 3566789999999 776  444444332         


Q ss_pred             --------eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 004203          173 --------EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG  211 (768)
Q Consensus       173 --------tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd  211 (768)
                              .+..+|..+.+....+........++|+|||+++++.+.
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             cccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEec
Confidence                    235588888888777766677888999999999988873

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.31  E-value=2.1e-05  Score=76.60  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=70.3

Q ss_pred             EECCC--CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC-C-----CeEEEEECCCCcEE
Q 004203          114 AFSPD--GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-D-----HEVRLWNASTAECI  185 (768)
Q Consensus       114 afSPD--G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~-D-----gtVrLWDl~sg~~i  185 (768)
                      ..|||  |++++..+. +.|++.|+.+++.. .|..+.+.+...+||| ||+.||.... +     ..|+++++.+++..
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            45788  999887654 57999999988864 4555667788899999 8888887543 2     25888899888776


Q ss_pred             EEecC-------CCCeEEEEEcCCCCEEEEEE
Q 004203          186 GSRDF-------YRPIASIAFHASGELLAVAS  210 (768)
Q Consensus       186 ~~l~h-------~~~V~svafSPDG~~LatgS  210 (768)
                      .....       ........|+|||+.|+...
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            55322       23456789999999998875

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.19  E-value=7.1e-06  Score=89.45  Aligned_cols=167  Identities=7%  Similarity=-0.063  Sum_probs=111.5

Q ss_pred             CCCEE-EEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEEEE--EeCC-----------------CeEEEE
Q 004203           80 ARRGL-ASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLAS--THGD-----------------HTVKII  134 (768)
Q Consensus        80 ~g~~L-vSgs~DgsIrlWd~~t~~L-----~gH~~~VtslafSPDG~~LaS--gS~D-----------------gtVrVW  134 (768)
                      ++++| ++-..+..|.++|+++.+.     ..+...+..++|+|||+++++  .+.+                 ..+..+
T Consensus        82 DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~i  161 (441)
T d1qnia2          82 DGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAI  161 (441)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEee
Confidence            45555 5556788999999998632     356788999999999995443  3322                 124568


Q ss_pred             eCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC-----------------------------------------Ce
Q 004203          135 DCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD-----------------------------------------HE  173 (768)
Q Consensus       135 Dl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~D-----------------------------------------gt  173 (768)
                      |..+.+....+... +.+..+.|+| +++++++.+.+                                         +.
T Consensus       162 D~~t~~v~~qI~v~-~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v  239 (441)
T d1qnia2         162 DAETMDVAWQVIVD-GNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKV  239 (441)
T ss_dssp             ETTTCSEEEEEEES-SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred             cCccceeeEEEecC-CCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCc
Confidence            98888887777654 3477899999 88888877643                                         34


Q ss_pred             EEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcccc-----CCeEeec---CCCCeEEEEE
Q 004203          174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS-----SPRIVLR---TRRSLRAVHF  243 (768)
Q Consensus       174 VrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~-----~~~~l~~---h~~~V~sVaF  243 (768)
                      +.+++....+.+..+........+.++|||+++++++  ++.|.+||+.+.....     ....+..   ..-.....+|
T Consensus       240 ~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f  319 (441)
T d1qnia2         240 PVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF  319 (441)
T ss_dssp             CEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred             EEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence            4555555555566665555567799999999998877  4569999987643210     0000111   1223455789


Q ss_pred             ccCCC
Q 004203          244 HPHAA  248 (768)
Q Consensus       244 SPDG~  248 (768)
                      +++|.
T Consensus       320 d~~g~  324 (441)
T d1qnia2         320 DGRGN  324 (441)
T ss_dssp             CSSSE
T ss_pred             cCCce
Confidence            99886

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.15  E-value=3.6e-05  Score=80.70  Aligned_cols=147  Identities=12%  Similarity=0.064  Sum_probs=95.4

Q ss_pred             CCeEEEEECCCCCEEEEEeC-CCeEEEEeCCC-CeEE--EEE--ecCCCCcEEEEEccCCCCEEEE-EeCCCeEEEEECC
Q 004203          108 RSTIAAAFSPDGKTLASTHG-DHTVKIIDCQT-GSCL--KVL--HGHRRTPWVVRFHPLNPTIIAS-GSLDHEVRLWNAS  180 (768)
Q Consensus       108 ~~VtslafSPDG~~LaSgS~-DgtVrVWDl~t-g~~l--~~l--~gH~g~V~sVafSP~dg~lLaS-gS~DgtVrLWDl~  180 (768)
                      ..++++.|+|||++++++.. ...|.+|+... ++..  ..+  .......+.+.|+| ++++++. ...+++|.+||+.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence            34789999999999888764 45788887654 3322  122  22345688899999 7776654 5568899999997


Q ss_pred             CCcEEE--E---ec---------------CCCCeEEEEEcCCCCEEEEEE--CCe-----EEEEEcCCCccccCCeEe--
Q 004203          181 TAECIG--S---RD---------------FYRPIASIAFHASGELLAVAS--GHK-----LYIWRYNMREETSSPRIV--  231 (768)
Q Consensus       181 sg~~i~--~---l~---------------h~~~V~svafSPDG~~LatgS--dd~-----I~IWDl~t~~~~~~~~~l--  231 (768)
                      .++...  .   ..               .......+.++|||++|+++.  ++.     |..|++...........+  
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            654321  1   10               111245789999999998875  222     777777654332211111  


Q ss_pred             -ecCCCCeEEEEEcc-CCCeEEEEEe
Q 004203          232 -LRTRRSLRAVHFHP-HAAPLLLTAE  255 (768)
Q Consensus       232 -~~h~~~V~sVaFSP-DG~~LlaS~s  255 (768)
                       .......+.++|+| +|++|+++..
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeC
Confidence             12345678899998 8998877753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.10  E-value=0.00018  Score=75.21  Aligned_cols=148  Identities=14%  Similarity=0.036  Sum_probs=89.2

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEE-ecCCCCcEEEEEccCCCCEEE--EEe-CCCeEEEEECC
Q 004203          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKVL-HGHRRTPWVVRFHPLNPTIIA--SGS-LDHEVRLWNAS  180 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-g~~l~~l-~gH~g~V~sVafSP~dg~lLa--SgS-~DgtVrLWDl~  180 (768)
                      ....+..++|++|+++|+++.. +.+..|.+.. +...... .........+.+++ +++.++  +.. ..++|..+.+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEcc
Confidence            4455677999999999998765 4677776653 3322221 22234455678888 666432  222 23455544432


Q ss_pred             C-------------CcEEEE-----ecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCC--eEeecCCCCe
Q 004203          181 T-------------AECIGS-----RDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSP--RIVLRTRRSL  238 (768)
Q Consensus       181 s-------------g~~i~~-----l~h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~--~~l~~h~~~V  238 (768)
                      .             ++....     ......+.++.|+|||++|++...  ++|.+|+..........  ..........
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            1             111111     112335789999999999999884  55989887654322111  1122235678


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004203          239 RAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS~s  255 (768)
                      +.+.|+|+|+++.++.+
T Consensus       196 r~i~f~pdg~~~yv~~e  212 (365)
T d1jofa_         196 RWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCceEEEecc
Confidence            99999999998777664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.96  E-value=0.0022  Score=65.35  Aligned_cols=172  Identities=9%  Similarity=-0.010  Sum_probs=106.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeCCCCeEEEEEecC--CC
Q 004203           81 RRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHG----DHTVKIIDCQTGSCLKVLHGH--RR  150 (768)
Q Consensus        81 g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~----DgtVrVWDl~tg~~l~~l~gH--~g  150 (768)
                      +...++-...+.|..|+.+...    +.........++|++||+++++...    .+.|...+..++.........  ..
T Consensus        51 G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  130 (319)
T d2dg1a1          51 GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY  130 (319)
T ss_dssp             SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred             CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCccc
Confidence            3444445567778888876652    2244556889999999998876644    344666666666544444322  23


Q ss_pred             CcEEEEEccCCCCEEEEEeC------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCC
Q 004203          151 TPWVVRFHPLNPTIIASGSL------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMR  222 (768)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~  222 (768)
                      .++.+.+.+ +|++.++...      .+.++.++...+........-...+.++|+||++.|+++.  .++|+.||++..
T Consensus       131 ~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~  209 (319)
T d2dg1a1         131 CIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  209 (319)
T ss_dssp             CEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCC
Confidence            467899999 8887776432      1246666655544333333334557899999999887776  456999998754


Q ss_pred             ccccCCe-----EeecCCCCeEEEEEccCCCeEEEE
Q 004203          223 EETSSPR-----IVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       223 ~~~~~~~-----~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      .......     ...........+++.++|+.+++.
T Consensus       210 g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         210 GVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             SSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             CceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            3211110     011112346789999999966554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.88  E-value=0.00051  Score=67.78  Aligned_cols=170  Identities=9%  Similarity=0.001  Sum_probs=110.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC-C--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP-L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~-L--~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV  155 (768)
                      .++...++....+.+++++..... +  ........++++.++|+++++-..+..+.+++............-......+
T Consensus        66 ~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i  145 (260)
T d1rwia_          66 GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV  145 (260)
T ss_dssp             TTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEE
T ss_pred             CCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCccee
Confidence            344455555555566666544332 1  1223567899999999988877777888888876544322222223456789


Q ss_pred             EEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeec
Q 004203          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLR  233 (768)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~  233 (768)
                      ++.+ +++++++...++.|..+|......... ...-.....++++++|.++++-.. ++|..++........   ....
T Consensus       146 ~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~---~~~~  221 (260)
T d1rwia_         146 AVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---LPFT  221 (260)
T ss_dssp             EECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE---CCCC
T ss_pred             eecC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE---EccC
Confidence            9999 888888888888999999876544332 234456788999999987666654 458888765543211   1112


Q ss_pred             CCCCeEEEEEccCCCeEEE
Q 004203          234 TRRSLRAVHFHPHAAPLLL  252 (768)
Q Consensus       234 h~~~V~sVaFSPDG~~Lla  252 (768)
                      .-.....|+++++|..+++
T Consensus       222 ~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         222 GLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEE
T ss_pred             CCCCeEEEEEeCCCCEEEE
Confidence            2356789999999985443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.85  E-value=0.00057  Score=66.02  Aligned_cols=80  Identities=20%  Similarity=0.209  Sum_probs=56.5

Q ss_pred             CCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC----C--CeEEEEeCCCCeEEEEEe------cCCCCcE
Q 004203           89 EAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG----D--HTVKIIDCQTGSCLKVLH------GHRRTPW  153 (768)
Q Consensus        89 ~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~----D--gtVrVWDl~tg~~l~~l~------gH~g~V~  153 (768)
                      .++.|.+.|+..+   +|..+.+.+...+|||||++||....    +  ..|.+++..+++......      .......
T Consensus        19 ~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~   98 (281)
T d1k32a2          19 CCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTD   98 (281)
T ss_dssp             ETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSE
T ss_pred             eCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccccc
Confidence            3456777788766   46677888999999999999987643    1  358888988887654321      1223456


Q ss_pred             EEEEccCCCCEEEEEe
Q 004203          154 VVRFHPLNPTIIASGS  169 (768)
Q Consensus       154 sVafSP~dg~lLaSgS  169 (768)
                      ...|+| +++.|+...
T Consensus        99 ~~~~sp-dg~~l~~~~  113 (281)
T d1k32a2          99 VAGFDP-DGNLIISTD  113 (281)
T ss_dssp             EEEECT-TCCEEEEEC
T ss_pred             ccccCC-CCCEEEEEE
Confidence            789999 888877653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.70  E-value=0.0013  Score=65.37  Aligned_cols=141  Identities=15%  Similarity=0.207  Sum_probs=100.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe--cCCCCc
Q 004203           80 ARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRRTP  152 (768)
Q Consensus        80 ~g~~LvSgs~DgsIrlWd~~t~~-----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~--gH~g~V  152 (768)
                      .+..++.-.....+.+++.....     ...+......+++.++|+.+++....+.|++||. +|+.+..+.  +.....
T Consensus       124 ~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P  202 (279)
T d1q7fa_         124 KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYP  202 (279)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSE
T ss_pred             CCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCC
Confidence            34444444455556666654331     2356677899999999999888888999999996 467677763  344457


Q ss_pred             EEEEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEEecC---CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004203          153 WVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (768)
Q Consensus       153 ~sVafSP~dg~lLaSgS~-DgtVrLWDl~sg~~i~~l~h---~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~  223 (768)
                      ..|++.+ +++++++-.. ++.|.+|+ .+|+.+..+..   ......+++.|||.++++..+++|++|.+....
T Consensus       203 ~giavD~-~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         203 IGVGINS-NGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEECT-TCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred             ccccccc-CCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeeec
Confidence            8899999 8887776544 45799998 46887776642   235788999999986655445669999987653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.65  E-value=0.0035  Score=63.88  Aligned_cols=162  Identities=9%  Similarity=0.030  Sum_probs=99.1

Q ss_pred             CCeEEEEeCCCCCCC--------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC----CcEEEEE
Q 004203           90 AESLHHLRPKYCPLS--------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR----TPWVVRF  157 (768)
Q Consensus        90 DgsIrlWd~~t~~L~--------gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g----~V~sVaf  157 (768)
                      +++|..||..++...        .....-..++|.++|+.|+++.....|.++|.+++..........+    ..+.+++
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~  124 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAF  124 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEE
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEE
Confidence            467888888765311        1122357899999999999888888899999876543322222222    3577999


Q ss_pred             ccCCCCEEEEEeC---------------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCC----EEEEEE--CCeEEE
Q 004203          158 HPLNPTIIASGSL---------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE----LLAVAS--GHKLYI  216 (768)
Q Consensus       158 SP~dg~lLaSgS~---------------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~----~LatgS--dd~I~I  216 (768)
                      .+ +|++.++-..               ++.|+.++.. ++.......-..-+.++|+|++.    .|+++.  .++|+.
T Consensus       125 d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~  202 (314)
T d1pjxa_         125 DY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWS  202 (314)
T ss_dssp             CT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred             CC-CCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEE
Confidence            99 8888776432               2345555543 44444333333457899999875    566554  345999


Q ss_pred             EEcCCCccccCCeEeec----CCCCeEEEEEccCCCeEEEE
Q 004203          217 WRYNMREETSSPRIVLR----TRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       217 WDl~t~~~~~~~~~l~~----h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ||+..............    .......+++..+|+.+++.
T Consensus       203 ~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~  243 (314)
T d1pjxa_         203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             eeccCccccceeeEEEEccccccccceeeEEecCCcEEEEE
Confidence            98865433221111111    12346789999999965554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.63  E-value=0.0025  Score=63.24  Aligned_cols=158  Identities=14%  Similarity=0.123  Sum_probs=108.7

Q ss_pred             CCCeEEEEeCCCCC---C-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe--cCCCCcEEEEEccCCC
Q 004203           89 EAESLHHLRPKYCP---L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNP  162 (768)
Q Consensus        89 ~DgsIrlWd~~t~~---L-~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~--gH~g~V~sVafSP~dg  162 (768)
                      ....|..++.....   + ........++++.++|+++++....+.+.++|. +++.+..+.  .+......+++.+ ++
T Consensus        91 ~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~-~g  168 (279)
T d1q7fa_          91 PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVND-KQ  168 (279)
T ss_dssp             GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECS-SS
T ss_pred             CccccccccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecc-ce
Confidence            44466666654331   1 234556789999999999888888888999985 466666653  3445677889998 88


Q ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecC---CCCeEEEEEcCCCCEEEEEE-CC-eEEEEEcCCCccccCCeEeecCCCC
Q 004203          163 TIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVAS-GH-KLYIWRYNMREETSSPRIVLRTRRS  237 (768)
Q Consensus       163 ~lLaSgS~DgtVrLWDl~sg~~i~~l~h---~~~V~svafSPDG~~LatgS-dd-~I~IWDl~t~~~~~~~~~l~~h~~~  237 (768)
                      +++++....+.|++||. +++.+..+..   ......++++++|+++++-. ++ .|.+|+.. ++... ..........
T Consensus       169 ~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~-~~~~~~~~~~  245 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLIS-ALESKVKHAQ  245 (279)
T ss_dssp             EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEE-EEEESSCCSC
T ss_pred             eEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEE-EEeCCCCCCC
Confidence            88888888899999997 4667777653   33567899999999776644 33 48998843 33222 0111122346


Q ss_pred             eEEEEEccCCCeEE
Q 004203          238 LRAVHFHPHAAPLL  251 (768)
Q Consensus       238 V~sVaFSPDG~~Ll  251 (768)
                      ...|++.|||..++
T Consensus       246 p~~vav~~dG~l~V  259 (279)
T d1q7fa_         246 CFDVALMDDGSVVL  259 (279)
T ss_dssp             EEEEEEETTTEEEE
T ss_pred             EeEEEEeCCCcEEE
Confidence            78999999997443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=0.00061  Score=67.23  Aligned_cols=161  Identities=8%  Similarity=0.018  Sum_probs=102.2

Q ss_pred             EEeCCCeEEEEeCCCCC---C-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCC
Q 004203           86 SWVEAESLHHLRPKYCP---L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN  161 (768)
Q Consensus        86 Sgs~DgsIrlWd~~t~~---L-~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~d  161 (768)
                      .....+.|..++.....   + ..-.....+++++++|+++++....+.|++++-.++..+..+.+ ...+..+++.+ +
T Consensus        31 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~-~  108 (260)
T d1rwia_          31 SEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDT-Q  108 (260)
T ss_dssp             ECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECT-T
T ss_pred             EcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccc-c
Confidence            34455666666654331   1 11123457889999999888877777787777665554433332 34578899999 8


Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeE
Q 004203          162 PTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLR  239 (768)
Q Consensus       162 g~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~  239 (768)
                      ++++++-..+..+..++......... .........++++++|+++++.. .++|..+|.+......   ..........
T Consensus       109 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~---~~~~~~~~p~  185 (260)
T d1rwia_         109 GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---LPFTDITAPW  185 (260)
T ss_dssp             CCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---CCCSSCCSEE
T ss_pred             ceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeee---eeccccCCCc
Confidence            88887766677788887765443222 22233457899999998766655 4559999877654322   1223456678


Q ss_pred             EEEEccCCCeEE
Q 004203          240 AVHFHPHAAPLL  251 (768)
Q Consensus       240 sVaFSPDG~~Ll  251 (768)
                      .|+++++|+.++
T Consensus       186 gi~~d~~g~l~v  197 (260)
T d1rwia_         186 GIAVDEAGTVYV  197 (260)
T ss_dssp             EEEECTTCCEEE
T ss_pred             cceeeeeeeeee
Confidence            999999998444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.58  E-value=0.0017  Score=65.29  Aligned_cols=177  Identities=12%  Similarity=-0.011  Sum_probs=113.8

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC-----C--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203           75 EAGRDARRGLASWVEAESLHHLRPKYCP-----L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (768)
Q Consensus        75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~-----L--~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (768)
                      .+...++..+++...++.+..|+.....     +  .........+++.++|+++++.+.++.|..+|..++.....+..
T Consensus        73 la~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~  152 (302)
T d2p4oa1          73 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH  152 (302)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecC
Confidence            3344566666666677777777654331     1  13445689999999999999989999999999988764433321


Q ss_pred             --------CC--CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE---EecCCCCeEEEEEcCCCCEEEEEE-CCe
Q 004203          148 --------HR--RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG---SRDFYRPIASIAFHASGELLAVAS-GHK  213 (768)
Q Consensus       148 --------H~--g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~---~l~h~~~V~svafSPDG~~LatgS-dd~  213 (768)
                              +.  ..+..+.+..  +.++++.+..+.|+.+|+.......   .+........++|+++|++.++.. +++
T Consensus       153 ~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~  230 (302)
T d2p4oa1         153 PMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS  230 (302)
T ss_dssp             GGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC
T ss_pred             CccceeeccCcccccccccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCc
Confidence                    11  2234455543  5566667778889988887543221   222334456799999999666655 456


Q ss_pred             EEEEEcCCCccccCCeEeecCCCCeEEEEE---ccCCCeEEEEEe
Q 004203          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHF---HPHAAPLLLTAE  255 (768)
Q Consensus       214 I~IWDl~t~~~~~~~~~l~~h~~~V~sVaF---SPDG~~LlaS~s  255 (768)
                      |..++........  ......-...++++|   ++|++.|.++..
T Consensus       231 V~~i~p~G~~~~~--~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         231 VVRIAPDRSTTII--AQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEEECTTCCEEEE--ECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEECCCCCEEEE--EecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            8888765442211  111224467899999   778887766654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.57  E-value=0.01  Score=59.60  Aligned_cols=162  Identities=14%  Similarity=0.057  Sum_probs=105.4

Q ss_pred             CCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC----CCCcEEEEEccCCC
Q 004203           89 EAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWVVRFHPLNP  162 (768)
Q Consensus        89 ~DgsIrlWd~~t~~L~--gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----~g~V~sVafSP~dg  162 (768)
                      ..+.|..||.++++..  .....+.++++.++|+++++ +.+ -|.++|.++++........    ...++.+.+.| +|
T Consensus        38 ~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G  114 (295)
T d2ghsa1          38 LERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SG  114 (295)
T ss_dssp             GGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TS
T ss_pred             CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CC
Confidence            4556666666655221  22456889999999887765 444 5999999999865443311    12477889999 88


Q ss_pred             CEEEEEeCC----CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccc--cCCeEee--
Q 004203          163 TIIASGSLD----HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREET--SSPRIVL--  232 (768)
Q Consensus       163 ~lLaSgS~D----gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~--~~~~~l~--  232 (768)
                      ++.++...+    +.-.+|.+..++.......-..-+.++|+++++.|+....  ++|+.++++.....  .......  
T Consensus       115 ~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~  194 (295)
T d2ghsa1         115 ALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS  194 (295)
T ss_dssp             CEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred             CEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEecc
Confidence            877665432    3456777777776655554456688999999998877763  45999988643321  1122221  


Q ss_pred             -cCCCCeEEEEEccCCCeEEEE
Q 004203          233 -RTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       233 -~h~~~V~sVaFSPDG~~LlaS  253 (768)
                       +.......+++..+|...++.
T Consensus       195 ~~~~g~pdG~~vD~~GnlWva~  216 (295)
T d2ghsa1         195 TGIKGGMDGSVCDAEGHIWNAR  216 (295)
T ss_dssp             TTSSSEEEEEEECTTSCEEEEE
T ss_pred             CcccccccceEEcCCCCEEeee
Confidence             234457889999999866543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.53  E-value=0.0023  Score=65.19  Aligned_cols=141  Identities=10%  Similarity=0.088  Sum_probs=96.9

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC----CCeEEEEECCCCcE
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL----DHEVRLWNASTAEC  184 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~----DgtVrLWDl~sg~~  184 (768)
                      .+.+++|.++|++.++-...+.|+.||.++++....+.........+++++ +++++++...    .+.+...|...+..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence            456899999999777777899999999988876666666666788999999 8887776543    23466666666555


Q ss_pred             EEEecC---CCCeEEEEEcCCCCEEEEEECC-------eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          185 IGSRDF---YRPIASIAFHASGELLAVASGH-------KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       185 i~~l~h---~~~V~svafSPDG~~LatgSdd-------~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      ......   ....+.+++.++|.+.++...+       .++.++.+....    ..+...-...+.++|+||++.|.++-
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~----~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV----TPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE----EEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee----EEEeeccceeeeeeeccccceEEEec
Confidence            444332   3457889999999866654322       255555443322    12333345678899999999766554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.39  E-value=0.008  Score=61.07  Aligned_cols=170  Identities=10%  Similarity=0.077  Sum_probs=105.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC---CC----CC-CCCeEEEEECCCCCEEEEEeC---------------CCeEEEEe
Q 004203           79 DARRGLASWVEAESLHHLRPKYCP---LS----PP-PRSTIAAAFSPDGKTLASTHG---------------DHTVKIID  135 (768)
Q Consensus        79 d~g~~LvSgs~DgsIrlWd~~t~~---L~----gH-~~~VtslafSPDG~~LaSgS~---------------DgtVrVWD  135 (768)
                      .++..++.......|...+.+...   +.    +. -...++++|.++|++.++-..               ++.|+.++
T Consensus        80 ~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~  159 (314)
T d1pjxa_          80 RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT  159 (314)
T ss_dssp             SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred             CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEe
Confidence            345556655555667777776541   11    11 113688999999988776432               34566666


Q ss_pred             CCCCeEEEEEecCCCCcEEEEEccCCCC-----EEEEEeCCCeEEEEECCCCcEEEE---e---c--CCCCeEEEEEcCC
Q 004203          136 CQTGSCLKVLHGHRRTPWVVRFHPLNPT-----IIASGSLDHEVRLWNASTAECIGS---R---D--FYRPIASIAFHAS  202 (768)
Q Consensus       136 l~tg~~l~~l~gH~g~V~sVafSP~dg~-----lLaSgS~DgtVrLWDl~sg~~i~~---l---~--h~~~V~svafSPD  202 (768)
                      .+ ++...... .....+.++|+| +++     ++++-+..+.|+.||+.....+..   +   .  .......+++..+
T Consensus       160 ~d-g~~~~~~~-~~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~  236 (314)
T d1pjxa_         160 TD-GQMIQVDT-AFQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED  236 (314)
T ss_dssp             TT-SCEEEEEE-EESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred             ec-CceeEeeC-CcceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC
Confidence            53 44443333 233457799999 543     555556778899998764332221   1   1  1223457999999


Q ss_pred             CCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          203 GELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       203 G~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                      |++.++.. .+.|++||.+.+....   .+......+.+++|.||++.|.++.
T Consensus       237 GnlyVa~~~~g~I~~~dp~~g~~~~---~i~~p~~~~t~~afg~d~~~lyVt~  286 (314)
T d1pjxa_         237 NNLLVANWGSSHIEVFGPDGGQPKM---RIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             CCEEEEEETTTEEEEECTTCBSCSE---EEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEEcCCCEEEEEeCCCCEEEE---EEECCCCCEEEEEEeCCCCEEEEEE
Confidence            99766554 5669999987665322   3334456789999999998776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.94  E-value=0.095  Score=52.23  Aligned_cols=173  Identities=14%  Similarity=0.098  Sum_probs=109.0

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCCCC------C--CCCCeEEEEECCCCCEEEEEeC----CCeEEEEeCCCCeEEE
Q 004203           76 AGRDARRGLASWVEAESLHHLRPKYCPLS------P--PPRSTIAAAFSPDGKTLASTHG----DHTVKIIDCQTGSCLK  143 (768)
Q Consensus        76 a~~d~g~~LvSgs~DgsIrlWd~~t~~L~------g--H~~~VtslafSPDG~~LaSgS~----DgtVrVWDl~tg~~l~  143 (768)
                      +..+++..+ .+..+ .|.++|..++++.      .  ....++++.+.|+|++.++...    .+.-.+|.+..++...
T Consensus        65 ~~~~dg~l~-va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~  142 (295)
T d2ghsa1          65 AKISDSKQL-IASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK  142 (295)
T ss_dssp             EEEETTEEE-EEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE
T ss_pred             EEecCCCEE-EEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE
Confidence            333444444 44444 5888888876422      1  1224889999999997776543    2345667777777655


Q ss_pred             EEecCCCCcEEEEEccCCCC-EEEEEeCCCeEEEEECCCC------cEEEEe---cCCCCeEEEEEcCCCCEEEEEE-CC
Q 004203          144 VLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTA------ECIGSR---DFYRPIASIAFHASGELLAVAS-GH  212 (768)
Q Consensus       144 ~l~gH~g~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~sg------~~i~~l---~h~~~V~svafSPDG~~LatgS-dd  212 (768)
                      .+.+. ...+.+.|++ +++ ++++-+..+.|+.+++...      +.....   ...+....++++.+|.+.++.- .+
T Consensus       143 ~~~~~-~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g  220 (295)
T d2ghsa1         143 LFADI-SIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG  220 (295)
T ss_dssp             EEEEE-SSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred             Eeecc-CCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC
Confidence            55443 3467899999 555 5556666788999987532      111111   2344567899999998665554 56


Q ss_pred             eEEEEEcCCCccccCCeEeecCCCCeEEEEEc-cCCCeEEEEEee
Q 004203          213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTAEV  256 (768)
Q Consensus       213 ~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFS-PDG~~LlaS~sv  256 (768)
                      .|.+||-+ ++...   .+.-....+++++|- ||.+.|.+++..
T Consensus       221 ~V~~~dp~-G~~~~---~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         221 AVDRYDTD-GNHIA---RYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEECTT-CCEEE---EEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ceEEecCC-CcEee---EecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            69999964 44322   232234579999996 787877776653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.3  Score=47.82  Aligned_cols=145  Identities=12%  Similarity=0.044  Sum_probs=97.7

Q ss_pred             CCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 004203          106 PPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (768)
Q Consensus       106 H~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~  184 (768)
                      +...+.+++|....+.|+-. ..++.|+..+++.+.....+......+..+++....+++..+-...+.|.+.++.....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            44457889999877777655 45788999999877666666544467888999873455555555677999999986654


Q ss_pred             EEEecC-CCCeEEEEEcCCCCEEEEEECC--e--EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          185 IGSRDF-YRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       185 i~~l~h-~~~V~svafSPDG~~LatgSdd--~--I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ...... -.....++.+|...+|+....+  .  |..-+++.....   ......-....++++.+.++.|..+
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~---~i~~~~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR---ILAQDNLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE---EEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce---eeeeecccccceEEEeecCcEEEEE
Confidence            333332 3567899999988888766533  2  444455443321   1222344567899999888877655

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.64  E-value=0.089  Score=56.06  Aligned_cols=143  Identities=11%  Similarity=0.075  Sum_probs=95.3

Q ss_pred             EEEECC---CCCEEEEEeC-CCeEEEEeCCCCeEEEEEecC-CCCcEEEEEccC-CCCEEEEEeCCC-------------
Q 004203          112 AAAFSP---DGKTLASTHG-DHTVKIIDCQTGSCLKVLHGH-RRTPWVVRFHPL-NPTIIASGSLDH-------------  172 (768)
Q Consensus       112 slafSP---DG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH-~g~V~sVafSP~-dg~lLaSgS~Dg-------------  172 (768)
                      .+.|..   ||++|+.... +..|-+.|+++.++.+.+.-. ...+..++..++ ...+++..+.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455554   8999888764 889999999999987765433 234565665431 445676666532             


Q ss_pred             -----eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC-----------------------------------
Q 004203          173 -----EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----------------------------------  212 (768)
Q Consensus       173 -----tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd-----------------------------------  212 (768)
                           .+..+|..+.+........+....+++++||+++++.+.+                                   
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                 3678899998887776666677789999999999988721                                   


Q ss_pred             ----eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          213 ----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       213 ----~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                          ++.+.|.++.... .........+....+.++|||+++++++.
T Consensus       249 ~eingV~VVD~~~~~~~-~v~~yIPVpKsPHGV~vSPDGKyi~VaGK  294 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASS-LFTRYIPIANNPHGCNMAPDKKHLCVAGK  294 (459)
T ss_dssp             EEETTEEEEECSGG--C-SSEEEEEEESSCCCEEECTTSSEEEEECT
T ss_pred             EEeCCceeecccccCCc-ceeEEEecCCCCCceEECCCCCEEEEeCC
Confidence                1333443321111 11122233455778999999999998875

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.98  E-value=1.2  Score=45.93  Aligned_cols=114  Identities=13%  Similarity=0.083  Sum_probs=73.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEE-----eCCCeEEEEeCCCCeEEE-EEecCCCCcEEEEEccCCCCEEEEEeCC-------
Q 004203          105 PPPRSTIAAAFSPDGKTLAST-----HGDHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPTIIASGSLD-------  171 (768)
Q Consensus       105 gH~~~VtslafSPDG~~LaSg-----S~DgtVrVWDl~tg~~l~-~l~gH~g~V~sVafSP~dg~lLaSgS~D-------  171 (768)
                      ++.-.+..+++|||+++++.+     +....|+++|+++++.+. .+..  .....+.|++ |++.|+....|       
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTH-DGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECT-TSSEEEEEECCCCSSCCS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcC-CCCEEEEEEeccccCccc
Confidence            344456678999999998844     224579999999998764 3332  1224589999 77777665433       


Q ss_pred             ---------CeEEEEECCCCcE--EEEec---CCCCeEEEEEcCCCCEEEEEE-C---Ce--EEEEEcCC
Q 004203          172 ---------HEVRLWNASTAEC--IGSRD---FYRPIASIAFHASGELLAVAS-G---HK--LYIWRYNM  221 (768)
Q Consensus       172 ---------gtVrLWDl~sg~~--i~~l~---h~~~V~svafSPDG~~LatgS-d---d~--I~IWDl~t  221 (768)
                               ..|++|.+.+...  +..+.   ....+..+..+.++++++... .   ..  +.+.|+..
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~  268 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCC
Confidence                     2588888887643  22232   223466778899999876543 2   22  55556544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.36  E-value=2.7  Score=42.41  Aligned_cols=163  Identities=12%  Similarity=0.070  Sum_probs=92.6

Q ss_pred             CCeEEEEeCCCCC-----C--CCC-----CCCeEEEEE--CCCCC-EEEEEe---CCCeEEEEeCCCCe-EE---EEEec
Q 004203           90 AESLHHLRPKYCP-----L--SPP-----PRSTIAAAF--SPDGK-TLASTH---GDHTVKIIDCQTGS-CL---KVLHG  147 (768)
Q Consensus        90 DgsIrlWd~~t~~-----L--~gH-----~~~Vtslaf--SPDG~-~LaSgS---~DgtVrVWDl~tg~-~l---~~l~g  147 (768)
                      .|.|.++|+....     +  .+.     .-.-..+..  .+||+ +|++..   ...+|.+|++.... .+   ..+..
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4788888876541     1  111     112344444  45665 344432   45678888875432 12   22322


Q ss_pred             C-CCCcEEEEEccCCCCEEEEEeC---------------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-
Q 004203          148 H-RRTPWVVRFHPLNPTIIASGSL---------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-  210 (768)
Q Consensus       148 H-~g~V~sVafSP~dg~lLaSgS~---------------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-  210 (768)
                      . ....+.+.+.. ++.+++|-..               -++..+|....++.......-...+.++++||+++|+++. 
T Consensus       147 ~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         147 KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             TTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             ccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeC
Confidence            1 24477888888 7777777311               1234455554544433333345678999999999998887 


Q ss_pred             -CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203          211 -GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (768)
Q Consensus       211 -dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~  254 (768)
                       .++|++|++....... ......-...+-.+.+.+++..+.+++
T Consensus       226 ~~~~i~~y~~~~~~~l~-~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         226 LAHKIHVYEKHANWTLT-PLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             GGTEEEEEEECTTSCEE-EEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEEeCCCcccc-eEEEecCCCCCCccEEecCCCEEEEEE
Confidence             4569999987554322 122223455677888876443344444

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.17  E-value=0.24  Score=54.04  Aligned_cols=80  Identities=10%  Similarity=0.071  Sum_probs=56.0

Q ss_pred             CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeE--EEEEcCCCC-E
Q 004203          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA--SIAFHASGE-L  205 (768)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~--svafSPDG~-~  205 (768)
                      |.|.-||+.+|+.+..+... .....-...- .+.+++.|+.|+.++-+|.++|+.+..+.....+.  -+.|.-||+ +
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            57889999999988776532 2222222333 56788889999999999999999998876444332  356667886 5


Q ss_pred             EEEEE
Q 004203          206 LAVAS  210 (768)
Q Consensus       206 LatgS  210 (768)
                      |++.+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            65554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.04  E-value=0.27  Score=53.72  Aligned_cols=81  Identities=12%  Similarity=0.077  Sum_probs=56.5

Q ss_pred             CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEE--EEEcCCCC-E
Q 004203          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIAS--IAFHASGE-L  205 (768)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~s--vafSPDG~-~  205 (768)
                      |.|.-||+.+|+.+..++... +...-..+- .+.+++.|+.|+.++.+|.++|+.+..+.....+..  +.|.-||+ +
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            468889999999888776432 121112233 577888899999999999999999988765443322  55666887 5


Q ss_pred             EEEEEC
Q 004203          206 LAVASG  211 (768)
Q Consensus       206 LatgSd  211 (768)
                      |++.++
T Consensus       535 v~v~~G  540 (573)
T d1kb0a2         535 VSVAVG  540 (573)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            555554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.01  E-value=0.45  Score=47.41  Aligned_cols=114  Identities=18%  Similarity=0.156  Sum_probs=74.8

Q ss_pred             eEEEEECCCCCEEEEEeCC-----C------eEEEEeCCCCeEE--EEE-ecCCCCcEEEEEccCCCCEEEEEeCC-CeE
Q 004203          110 TIAAAFSPDGKTLASTHGD-----H------TVKIIDCQTGSCL--KVL-HGHRRTPWVVRFHPLNPTIIASGSLD-HEV  174 (768)
Q Consensus       110 VtslafSPDG~~LaSgS~D-----g------tVrVWDl~tg~~l--~~l-~gH~g~V~sVafSP~dg~lLaSgS~D-gtV  174 (768)
                      +.......||+.++.|+.+     +      .+.+||..+++-.  ... ..+........+.+ ++.+++.|+.+ .++
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKT  100 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcce
Confidence            3444445577777776642     1      3779999887532  222 23333344567888 89999888765 589


Q ss_pred             EEEECCCCcEEEE--ecCCCCeEEEEEcCCCCEEEEEEC-------CeEEEEEcCCCcc
Q 004203          175 RLWNASTAECIGS--RDFYRPIASIAFHASGELLAVASG-------HKLYIWRYNMREE  224 (768)
Q Consensus       175 rLWDl~sg~~i~~--l~h~~~V~svafSPDG~~LatgSd-------d~I~IWDl~t~~~  224 (768)
                      .+||..+.+-...  .........++..+||++++.++.       +.+.+||..+.+-
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            9999988765443  223344567788899999888873       1289999887653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.96  E-value=1.6  Score=45.91  Aligned_cols=103  Identities=16%  Similarity=0.228  Sum_probs=60.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe--------cCCCCcEEEEEccC---CCCEEEEEe------CC
Q 004203          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--------GHRRTPWVVRFHPL---NPTIIASGS------LD  171 (768)
Q Consensus       109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~--------gH~g~V~sVafSP~---dg~lLaSgS------~D  171 (768)
                      .-++|+|.|||++|++--..|.|++++.++++......        .-.+....|+|+|+   ++.+.++-+      .+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~~  107 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCcc
Confidence            46799999999998877668999999988876543221        11234678999983   233333322      01


Q ss_pred             ----C--eEEEEECCCCcE--------EEEec--CCCCeEEEEEcCCCCEEEEEEC
Q 004203          172 ----H--EVRLWNASTAEC--------IGSRD--FYRPIASIAFHASGELLAVASG  211 (768)
Q Consensus       172 ----g--tVrLWDl~sg~~--------i~~l~--h~~~V~svafSPDG~~LatgSd  211 (768)
                          .  .+..+.......        +....  .......+.|.|||.+.++.++
T Consensus       108 ~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence                1  233333332211        11111  2234578999999986666553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.94  E-value=5.8  Score=40.56  Aligned_cols=238  Identities=9%  Similarity=-0.034  Sum_probs=119.6

Q ss_pred             ecCCCEEE-EEeCCC----eEEEEeCCCCCCCCCC---CCeEEEEECCCCCEEEEEeCC----------------CeEEE
Q 004203           78 RDARRGLA-SWVEAE----SLHHLRPKYCPLSPPP---RSTIAAAFSPDGKTLASTHGD----------------HTVKI  133 (768)
Q Consensus        78 ~d~g~~Lv-Sgs~Dg----sIrlWd~~t~~L~gH~---~~VtslafSPDG~~LaSgS~D----------------gtVrV  133 (768)
                      +.++++++ +.+.+|    .|++.|+.++++....   .....++|++|++.|+....|                ..|++
T Consensus       133 Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~  212 (430)
T d1qfma1         133 SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY  212 (430)
T ss_dssp             CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE
T ss_pred             cCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEE
Confidence            34444443 444444    5899999988543211   112568899999988765433                36888


Q ss_pred             EeCCCCeE--EEEEecCCC--CcEEEEEccCCCCEEEEEeC---CCe--EEEEECCCCcE--------EEEecC-CCCeE
Q 004203          134 IDCQTGSC--LKVLHGHRR--TPWVVRFHPLNPTIIASGSL---DHE--VRLWNASTAEC--------IGSRDF-YRPIA  195 (768)
Q Consensus       134 WDl~tg~~--l~~l~gH~g--~V~sVafSP~dg~lLaSgS~---Dgt--VrLWDl~sg~~--------i~~l~h-~~~V~  195 (768)
                      |.+.+...  ...+.....  .+..+..+. ++++++....   +..  +.+.|+.....        ...... ...+.
T Consensus       213 h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (430)
T d1qfma1         213 HVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD  291 (430)
T ss_dssp             EETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE
T ss_pred             EECCCCccccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceE
Confidence            88877532  344544333  344566777 7777654322   233  45556543211        112222 22233


Q ss_pred             EEEEcCCCCEEEEEEC----CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeec
Q 004203          196 SIAFHASGELLAVASG----HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATS  271 (768)
Q Consensus       196 svafSPDG~~LatgSd----d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~  271 (768)
                      .+ -+.++.+++....    ++|...++...........+..+...+..-.++-.+.+|++....+...           
T Consensus       292 ~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~-----------  359 (430)
T d1qfma1         292 YV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN-----------  359 (430)
T ss_dssp             EE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE-----------
T ss_pred             EE-ecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe-----------
Confidence            22 2333334443332    2377777766543321222333445565555555556666655432221           


Q ss_pred             CCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEeccCCCc
Q 004203          272 PGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSS  340 (768)
Q Consensus       272 ~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~  340 (768)
                               .+.+.+...+....+... +  ...+......+++..+.+.-.+-..+...+..++.+..
T Consensus       360 ---------~l~v~~~~~~~~~~~~~~-~--~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         360 ---------TLQLHDLATGALLKIFPL-E--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             ---------EEEEEETTTCCEEEEECC-C--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ---------EEEEEECCCCcEEEecCC-C--CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence                     112211111111111000 0  00111334456677788878888888888888876554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=4.5  Score=38.87  Aligned_cols=160  Identities=9%  Similarity=-0.003  Sum_probs=103.0

Q ss_pred             CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCe----EEEEEecCCCCcEEEEEccCCC
Q 004203           91 ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNP  162 (768)
Q Consensus        91 gsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~----~l~~l~gH~g~V~sVafSP~dg  162 (768)
                      ..|+..++.+..   +......+.+++|++..+.|+-.. .++.|+..+++...    ....+......+..+++.+..+
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            346667766542   334556788999999887777654 56778888775422    2233333345577889887456


Q ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecCCCCe
Q 004203          163 TIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSL  238 (768)
Q Consensus       163 ~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h~~~V  238 (768)
                      ++..+-...+.|.+.++.......... .......++.+|...+|+....   .+|...+++......   .....-...
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~---l~~~~~~~p  166 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQWP  166 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EECSSCSCE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec---cccccccee
Confidence            666665667799999998766544433 3456788999998777776653   237777775543311   222334667


Q ss_pred             EEEEEccCCCeEEEE
Q 004203          239 RAVHFHPHAAPLLLT  253 (768)
Q Consensus       239 ~sVaFSPDG~~LlaS  253 (768)
                      ..+++++.++.|..+
T Consensus       167 ~gl~iD~~~~~lYw~  181 (266)
T d1ijqa1         167 NGITLDLLSGRLYWV  181 (266)
T ss_dssp             EEEEEETTTTEEEEE
T ss_pred             eEEEeeccccEEEEe
Confidence            899999988877665

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.81  E-value=6.6  Score=40.36  Aligned_cols=171  Identities=6%  Similarity=-0.041  Sum_probs=104.6

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCC-----------CCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 004203           73 IFEAGRDARRGLASWVEAESLHHLRPKY-----------CPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG  139 (768)
Q Consensus        73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t-----------~~L~--gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg  139 (768)
                      .+.+..+.++.++.++.++ +.+...+.           ..+.  ..-..|..++|+-|  .|+.. .++.+..++..+-
T Consensus        40 ~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~l  115 (381)
T d1xipa_          40 QNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEEL  115 (381)
T ss_dssp             BCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSST
T ss_pred             ceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeecc
Confidence            3445556677777777775 44554321           0111  11235899999854  45544 4557888887664


Q ss_pred             eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE------ecCCCCeEEEEEcCCCCEEEEEECCe
Q 004203          140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS------RDFYRPIASIAFHASGELLAVASGHK  213 (768)
Q Consensus       140 ~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~------l~h~~~V~svafSPDG~~LatgSdd~  213 (768)
                      ........-...+..+.++|   ..++....++.+.++++..++....      +...+.+.+++|++.|+.++++.++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~  192 (381)
T d1xipa_         116 SEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE  192 (381)
T ss_dssp             TCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE
T ss_pred             ccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc
Confidence            44444444455678888877   4567778899999999998865332      23457788999999999888886665


Q ss_pred             EEEE-EcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203          214 LYIW-RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       214 I~IW-Dl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS  253 (768)
                      ..+- ++........+   ......|.+|.|-.+..++++=
T Consensus       193 ~q~k~~i~~~~~~~~p---~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         193 MEKQFEFSLPSELEEL---PVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEEEECCCHHHHTS---CTTTSEEEEEEESSSSEEEEEE
T ss_pred             eeeccCCCCccccCCC---cCCCcceeEEEEecCceEEEEE
Confidence            4432 33222221100   1233468899998777655443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.76  E-value=5.9  Score=38.00  Aligned_cols=160  Identities=11%  Similarity=-0.004  Sum_probs=96.7

Q ss_pred             eCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCC
Q 004203           88 VEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP  162 (768)
Q Consensus        88 s~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg  162 (768)
                      ..++.|+..++....    +..-...+.++++..-++.|+.+ ...+.|.+.+++...+...+......+..++++|..+
T Consensus        55 ~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g  134 (263)
T d1npea_          55 ISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRG  134 (263)
T ss_dssp             TTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT
T ss_pred             CCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccC
Confidence            345566666665431    12233568899998766666644 5578999999987665444444446788999999455


Q ss_pred             CEEEEEeCCC--eEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEeecCCCC
Q 004203          163 TIIASGSLDH--EVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRRS  237 (768)
Q Consensus       163 ~lLaSgS~Dg--tVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~l~~h~~~  237 (768)
                      .++.+-...+  .|.--++.......... .-.....+++++.++.|+....  ++|...|++.....    .+......
T Consensus       135 ~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~----~v~~~~~~  210 (263)
T d1npea_         135 NLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVLEGLQY  210 (263)
T ss_dssp             EEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEEECCCS
T ss_pred             cEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE----EEECCCCC
Confidence            4444432222  34444665443333332 2345678999999998887763  45988988765432    22222234


Q ss_pred             eEEEEEccCCCeEEEE
Q 004203          238 LRAVHFHPHAAPLLLT  253 (768)
Q Consensus       238 V~sVaFSPDG~~LlaS  253 (768)
                      ..+|++.  +.+|..+
T Consensus       211 P~~lav~--~~~lYwt  224 (263)
T d1npea_         211 PFAVTSY--GKNLYYT  224 (263)
T ss_dssp             EEEEEEE--TTEEEEE
T ss_pred             cEEEEEE--CCEEEEE
Confidence            5677775  4445544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.33  E-value=2.2  Score=45.09  Aligned_cols=167  Identities=7%  Similarity=-0.077  Sum_probs=102.1

Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCC--EEEEEeCC------------------CeEEE
Q 004203           80 ARRGLA-SWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGK--TLASTHGD------------------HTVKI  133 (768)
Q Consensus        80 ~g~~Lv-Sgs~DgsIrlWd~~t~~-----L~gH~~~VtslafSPDG~--~LaSgS~D------------------gtVrV  133 (768)
                      ++++|+ .-..+..|-+.|+++.+     .......+..+...++++  |++..+.+                  +.+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            445554 44577789999987652     224566788888876554  56555542                  23678


Q ss_pred             EeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC---------------eE-----------------------E
Q 004203          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH---------------EV-----------------------R  175 (768)
Q Consensus       134 WDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg---------------tV-----------------------r  175 (768)
                      +|.++.+....+.-. +....+.+++ +|+++++.+.+.               .+                       .
T Consensus       178 ID~~tm~V~~QV~V~-g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS-GNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EETTTTEEEEEEEES-SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EecCCceEEEEeeeC-CChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            899998887766543 3466789999 888888876431               13                       3


Q ss_pred             EEECCCC---cEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccc-------c-CCeEeecCCCCeEEEE
Q 004203          176 LWNASTA---ECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREET-------S-SPRIVLRTRRSLRAVH  242 (768)
Q Consensus       176 LWDl~sg---~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~-------~-~~~~l~~h~~~V~sVa  242 (768)
                      +-|.+..   ...+.+........+..+|||+++++++  +..+.++|+++-...       . .........-.....+
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~  335 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  335 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence            3333321   1222233334455789999999999998  456999999743221       0 0001111233456778


Q ss_pred             EccCCC
Q 004203          243 FHPHAA  248 (768)
Q Consensus       243 FSPDG~  248 (768)
                      |+..|.
T Consensus       336 fd~~g~  341 (459)
T d1fwxa2         336 FDGRGN  341 (459)
T ss_dssp             ECTTSE
T ss_pred             cCCCce
Confidence            877774

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.74  E-value=0.36  Score=52.73  Aligned_cols=80  Identities=16%  Similarity=0.247  Sum_probs=57.7

Q ss_pred             CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCe--EEEEEcCCCC-E
Q 004203          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGE-L  205 (768)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V--~svafSPDG~-~  205 (768)
                      |.|.-+|+.+|+.+..+..+. ++..-..+. .+.+++.|+.|+.++-+|.++|+.+..+.....+  .-+.|..||+ +
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            678899999999888776443 222212334 5678888999999999999999999887654433  2367778886 5


Q ss_pred             EEEEE
Q 004203          206 LAVAS  210 (768)
Q Consensus       206 LatgS  210 (768)
                      +++.+
T Consensus       544 v~i~a  548 (582)
T d1flga_         544 LGVTV  548 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.37  E-value=0.43  Score=52.12  Aligned_cols=80  Identities=9%  Similarity=0.103  Sum_probs=54.7

Q ss_pred             CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeE--EEEEcCCCC-E
Q 004203          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA--SIAFHASGE-L  205 (768)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~--svafSPDG~-~  205 (768)
                      |.|.-+|++||+.+.....-. ...+-.... .+.+++.++.|+.++-+|.++|+.+..+.....+.  -+.|..||+ +
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            468888999999887664322 121111222 46678889999999999999999998876544333  366777887 5


Q ss_pred             EEEEE
Q 004203          206 LAVAS  210 (768)
Q Consensus       206 LatgS  210 (768)
                      |++..
T Consensus       522 i~v~~  526 (571)
T d2ad6a1         522 IGSMY  526 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.19  E-value=1.2  Score=48.15  Aligned_cols=78  Identities=8%  Similarity=0.086  Sum_probs=47.5

Q ss_pred             eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203          173 EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (768)
Q Consensus       173 tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Ll  251 (768)
                      .|.-||+.+|+.+.......+...=...-.|.+|++++ ++.++.+|.++++.+.. +.+.. ...-.-+.|.-||++.+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~-~~~~~-~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE-APTGT-GVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS-CCCSCCEEEEETTEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEE-EECCC-CccccCEEEEECCEEEE
Confidence            57788999998887766544333222344677777777 45599999999987651 11111 11111155666887544


Q ss_pred             E
Q 004203          252 L  252 (768)
Q Consensus       252 a  252 (768)
                      +
T Consensus       536 ~  536 (573)
T d1kb0a2         536 S  536 (573)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.52  E-value=1.4  Score=47.71  Aligned_cols=79  Identities=9%  Similarity=-0.024  Sum_probs=47.7

Q ss_pred             CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       172 gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L  250 (768)
                      |.|.-+|+++|+.+.......+..+-...-.+.++++++ ++.++.+|.++++.+.  .........-.-+.|..||+..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW--~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW--NFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEE--EEECCCCceecceEEEECCEEE
Confidence            468888999999887765443332222233456677777 5569999999998754  1122222222235666789755


Q ss_pred             EE
Q 004203          251 LL  252 (768)
Q Consensus       251 la  252 (768)
                      ++
T Consensus       522 i~  523 (571)
T d2ad6a1         522 IG  523 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.26  E-value=1.5  Score=47.40  Aligned_cols=79  Identities=6%  Similarity=0.061  Sum_probs=49.2

Q ss_pred             CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       172 gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L  250 (768)
                      |.|.-||+.+++.+..+....+...-...-.|.+++.++ ++.++.+|.++++.+.. +. ......-.-+.|.-||+..
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~-~~-l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ-FE-AQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE-EE-CSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE-EE-CCCCccccCEEEEECCEEE
Confidence            468889999999988776554443333344566777776 55699999999987651 11 1111111225566788754


Q ss_pred             EE
Q 004203          251 LL  252 (768)
Q Consensus       251 la  252 (768)
                      ++
T Consensus       516 v~  517 (560)
T d1kv9a2         516 VA  517 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.78  E-value=1.1  Score=49.09  Aligned_cols=80  Identities=14%  Similarity=0.164  Sum_probs=54.7

Q ss_pred             CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCe--EEEEEcCCCC-E
Q 004203          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGE-L  205 (768)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V--~svafSPDG~-~  205 (768)
                      |.|.-||+.+|+.+..... ...+..-..+. .+.+++.|+.|+.++-+|.++|+.+..+.....+  .-+.|.-||+ +
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEE
Confidence            5788899999998766542 22222222333 5678888999999999999999999887644322  2355666887 5


Q ss_pred             EEEEE
Q 004203          206 LAVAS  210 (768)
Q Consensus       206 LatgS  210 (768)
                      |++.+
T Consensus       531 vav~~  535 (596)
T d1w6sa_         531 VAIYY  535 (596)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.63  E-value=11  Score=36.04  Aligned_cols=142  Identities=9%  Similarity=-0.018  Sum_probs=91.4

Q ss_pred             CCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcE
Q 004203          107 PRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAEC  184 (768)
Q Consensus       107 ~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~sg~~  184 (768)
                      ...+.++++.+.++.|+.+ ...+.|.+.+++.......+.........++++|..+.++.+-. ..+.|.-.++.....
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            3456788998866666655 45789999999877766666666677889999994444444432 334677777765444


Q ss_pred             EEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEeecC--CCCeEEEEEccCCCeEEEE
Q 004203          185 IGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLT  253 (768)
Q Consensus       185 i~~l~-h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPDG~~LlaS  253 (768)
                      ..... .-.....+++++.++.|+.+..  +.|...|++......   .....  .....++++.  +.+|..+
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~---~~~~~~~~~~p~~lav~--~~~ly~t  224 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT---ILEDEKRLAHPFSLAVF--EDKVFWT  224 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EEECTTTTSSEEEEEEE--TTEEEEE
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEE---EEeCCCcccccEEEEEE--CCEEEEE
Confidence            44333 2356789999999998888763  459999987654311   22221  2345667766  3445544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.55  E-value=6.2  Score=42.38  Aligned_cols=78  Identities=8%  Similarity=0.058  Sum_probs=50.3

Q ss_pred             CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       172 gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L  250 (768)
                      |.|.-+|+.+|+.+.......++..-..+..|.++++++ ++.++.+|..+++.+.. .. ......-.-+.|..+|++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~-~~-~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK-FQ-TGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EE-CSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEE-EE-CCCCccccCEEEEECCEEE
Confidence            568889999999888776555444333345677777777 55699999999997651 11 2221111225677899654


Q ss_pred             E
Q 004203          251 L  251 (768)
Q Consensus       251 l  251 (768)
                      +
T Consensus       544 v  544 (582)
T d1flga_         544 L  544 (582)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.91  E-value=11  Score=37.78  Aligned_cols=119  Identities=14%  Similarity=0.167  Sum_probs=85.2

Q ss_pred             CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEE
Q 004203          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA  207 (768)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~La  207 (768)
                      ...|.|.|+........-.-   ...+.-.+| ..++||--+ ..++.++|+++.+.++.+....+|.--.|-.+ +.|+
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP-~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~  117 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI---SADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVA  117 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC---CCSEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSS-SEEE
T ss_pred             CceEEEEECCCCCcceeccc---chhhhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCC-CEEE
Confidence            34788889876553222111   123456789 777777655 55899999999999999988889988888754 5678


Q ss_pred             EEECCeEEEEEcCCCccccCCeEeec-C----CCCeEEEEEccCCCeEEEEEe
Q 004203          208 VASGHKLYIWRYNMREETSSPRIVLR-T----RRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       208 tgSdd~I~IWDl~t~~~~~~~~~l~~-h----~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ..++..|+-|++.....   |.++.. |    ...|-.-..+++.++++..+-
T Consensus       118 lVT~taVYHW~~~g~s~---P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI  167 (327)
T d1utca2         118 LVTDNAVYHWSMEGESQ---PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI  167 (327)
T ss_dssp             EECSSEEEEEESSSSCC---CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred             EEcCCceEEEcccCCCC---chhhhhhcccccCceEEEEEECCCCCEEEEEeE
Confidence            88888999999965432   444433 3    356888888999999887664

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=84.60  E-value=4.1  Score=39.95  Aligned_cols=95  Identities=11%  Similarity=0.179  Sum_probs=62.5

Q ss_pred             cCCCCEEEEEeCCC-----------eEEEEECCCCcEEEE----ecCCCCeEEEEEcCCCCEEEEEECC--eEEEEEcCC
Q 004203          159 PLNPTIIASGSLDH-----------EVRLWNASTAECIGS----RDFYRPIASIAFHASGELLAVASGH--KLYIWRYNM  221 (768)
Q Consensus       159 P~dg~lLaSgS~Dg-----------tVrLWDl~sg~~i~~----l~h~~~V~svafSPDG~~LatgSdd--~I~IWDl~t  221 (768)
                      +.++++++.|+.+.           .+.+||..+++-...    ..+.......++.+||++++.|+.+  .+.+||..+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            33788888877431           378999998764322    2233445567899999999988743  499999988


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ......+  .......-..++..+||+.+++++.
T Consensus       108 ~~w~~~~--~~~~~r~~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3         108 DSWIPGP--DMQVARGYQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             TEEEECC--CCSSCCSSCEEEECTTSCEEEECCC
T ss_pred             Ccccccc--cccccccccceeeecCCceeeeccc
Confidence            7653311  1112233456778889997777664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.91  E-value=4.4  Score=43.93  Aligned_cols=79  Identities=8%  Similarity=0.029  Sum_probs=48.9

Q ss_pred             CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (768)
Q Consensus       172 gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L  250 (768)
                      |.|.-||+.+|+.+....+..+...-..+-.|.+++.++ ++.++.+|.++++.+..  ........-.-+.|.-||++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~--~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK--FKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeE--EECCCCcccCCeEEEECCEEE
Confidence            468888999998877765444443333344577777777 55699999999987651  111111111224556688754


Q ss_pred             EE
Q 004203          251 LL  252 (768)
Q Consensus       251 la  252 (768)
                      ++
T Consensus       531 va  532 (596)
T d1w6sa_         531 VA  532 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=83.89  E-value=3.3  Score=41.77  Aligned_cols=141  Identities=11%  Similarity=0.130  Sum_probs=80.5

Q ss_pred             eEEEEECCCCCEEEEEeC------------CCeEEEEeCCCCeEE-EEE--ecCC-----CCcEEEEE--ccCCCC-EEE
Q 004203          110 TIAAAFSPDGKTLASTHG------------DHTVKIIDCQTGSCL-KVL--HGHR-----RTPWVVRF--HPLNPT-IIA  166 (768)
Q Consensus       110 VtslafSPDG~~LaSgS~------------DgtVrVWDl~tg~~l-~~l--~gH~-----g~V~sVaf--SP~dg~-lLa  166 (768)
                      ..+++..|||..+++++.            .|.|.++|+++.+.. ..+  .+..     -....+..  .+ ++. +|+
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~-dg~~~L~  115 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD-DNTVYLL  115 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECT-TCCEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcC-CCcEEEE
Confidence            446777788877766542            489999998765321 222  2111     12233333  23 344 344


Q ss_pred             EEe---CCCeEEEEECCCCc--EE--EEecC--CCCeEEEEEcCCCCEEEEEE--C--------------CeEEEEEcCC
Q 004203          167 SGS---LDHEVRLWNASTAE--CI--GSRDF--YRPIASIAFHASGELLAVAS--G--------------HKLYIWRYNM  221 (768)
Q Consensus       167 SgS---~DgtVrLWDl~sg~--~i--~~l~h--~~~V~svafSPDG~~LatgS--d--------------d~I~IWDl~t  221 (768)
                      ...   ...+|-+|++....  ..  .++.+  ....+++++..+|.++++-.  .              ....+|..+.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            443   34577777775432  21  22332  24578999999998877731  0              1245565555


Q ss_pred             CccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                      ++.    ......-...+.|+++||+++++++..
T Consensus       196 ~~~----~~~~~~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         196 NDV----RVVAEGFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             SCE----EEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             Cce----EEEcCCCCccceeEECCCCCEEEEEeC
Confidence            432    123344567899999999998877654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=82.40  E-value=21  Score=35.93  Aligned_cols=173  Identities=8%  Similarity=0.038  Sum_probs=96.8

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCC-CCCeEEEEEC------CCCCEEEEEeC--C--CeEEEEeCCC-CeEEEEEecC--
Q 004203           83 GLASWVEAESLHHLRPKYCPLSPP-PRSTIAAAFS------PDGKTLASTHG--D--HTVKIIDCQT-GSCLKVLHGH--  148 (768)
Q Consensus        83 ~LvSgs~DgsIrlWd~~t~~L~gH-~~~VtslafS------PDG~~LaSgS~--D--gtVrVWDl~t-g~~l~~l~gH--  148 (768)
                      .++.-.+.+-|.++|+.-.++.-. .+.++.++.-      -+...|+.+++  +  -+|.+|.+.. ...+..+...  
T Consensus        42 lI~gTdK~~Gl~vYdL~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~  121 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNR  121 (353)
T ss_dssp             EEEEEETTSCCEEEETTCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSS
T ss_pred             EEEEEcCcCCEEEEcCCCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccccc
Confidence            333334444577777754432211 2455554433      22334556653  2  3677887642 2233333221  


Q ss_pred             -----CCCcEEEEE--ccCCCCE-EEEEeCCCeEEEEECC---CC----cEEEEecCCCCeEEEEEcCCCCEEEEEECCe
Q 004203          149 -----RRTPWVVRF--HPLNPTI-IASGSLDHEVRLWNAS---TA----ECIGSRDFYRPIASIAFHASGELLAVASGHK  213 (768)
Q Consensus       149 -----~g~V~sVaf--SP~dg~l-LaSgS~DgtVrLWDl~---sg----~~i~~l~h~~~V~svafSPDG~~LatgSdd~  213 (768)
                           ...++.+++  ++.++.+ ++....+|.+..|.+.   .+    +.++.+.....+..|.++.....|+.+-.+.
T Consensus       122 p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~  201 (353)
T d1h6la_         122 PIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDE  201 (353)
T ss_dssp             CEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT
T ss_pred             ccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCcc
Confidence                 124677777  6655654 5556678888888663   33    3455677888999999999999999988554


Q ss_pred             -EEEEEcCCCccccCCeEee--c--CCCCeEEEEEcc--CCC-eEEEEEe
Q 004203          214 -LYIWRYNMREETSSPRIVL--R--TRRSLRAVHFHP--HAA-PLLLTAE  255 (768)
Q Consensus       214 -I~IWDl~t~~~~~~~~~l~--~--h~~~V~sVaFSP--DG~-~LlaS~s  255 (768)
                       |+.+++.............  +  ....+..|+.-.  ++. ||++++.
T Consensus       202 Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ  251 (353)
T d1h6la_         202 AIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ  251 (353)
T ss_dssp             EEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             ceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC
Confidence             7777765332211111111  1  245777777543  444 6666654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.23  E-value=9.8  Score=39.46  Aligned_cols=106  Identities=11%  Similarity=0.163  Sum_probs=64.6

Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCCeEEEEEcCC---CCEEEEEE------
Q 004203          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHAS---GELLAVAS------  210 (768)
Q Consensus       149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---------h~~~V~svafSPD---G~~LatgS------  210 (768)
                      -...+.|+|.| +++++++-..+|.|++++..+++......         -+.....++|+|+   ..+|+...      
T Consensus        26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            35688999999 88888776568999999988876544321         2346678999995   34444431      


Q ss_pred             --C----Ce--EEEEEcCCCccccC-CeEe-e----cCCCCeEEEEEccCCCeEEEEEe
Q 004203          211 --G----HK--LYIWRYNMREETSS-PRIV-L----RTRRSLRAVHFHPHAAPLLLTAE  255 (768)
Q Consensus       211 --d----d~--I~IWDl~t~~~~~~-~~~l-~----~h~~~V~sVaFSPDG~~LlaS~s  255 (768)
                        +    ..  +..+.......... ...+ .    .....-..|.|.|||..+++.+.
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence              1    11  44444443322110 0111 1    11235678999999987666664