Citrus Sinensis ID: 004221
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 767 | 2.2.26 [Sep-21-2011] | |||||||
| Q32PW3 | 1191 | Transcription initiation | yes | no | 0.904 | 0.582 | 0.275 | 6e-65 | |
| Q5ZIT8 | 1168 | Transcription initiation | yes | no | 0.891 | 0.585 | 0.273 | 2e-64 | |
| Q6P1X5 | 1199 | Transcription initiation | yes | no | 0.899 | 0.575 | 0.269 | 3e-64 | |
| Q8C176 | 1104 | Transcription initiation | yes | no | 0.890 | 0.618 | 0.273 | 5e-63 | |
| Q24325 | 1221 | Transcription initiation | yes | no | 0.886 | 0.556 | 0.271 | 8e-63 | |
| P87121 | 1172 | Transcription initiation | yes | no | 0.902 | 0.590 | 0.243 | 7e-51 | |
| P23255 | 1407 | Transcription initiation | yes | no | 0.586 | 0.319 | 0.271 | 4e-38 | |
| Q97VF1 | 784 | Probable aminopeptidase 1 | yes | no | 0.436 | 0.427 | 0.209 | 2e-10 | |
| P95928 | 785 | Leucyl aminopeptidase OS= | no | no | 0.425 | 0.415 | 0.224 | 3e-10 | |
| Q07075 | 957 | Glutamyl aminopeptidase O | no | no | 0.439 | 0.352 | 0.222 | 6e-10 |
| >sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio GN=taf2 PE=2 SV=2 | Back alignment and function desciption |
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Score = 249 bits (636), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 215/780 (27%), Positives = 366/780 (46%), Gaps = 86/780 (11%)
Query: 21 VRHQKLCLS-IDMEKHQIYGYTELEI--AVPDIGIVGLHAENLGIESVLVDGEPTEFEYY 77
+ HQ +C++ ++ ++ + GY EL I V ++ + L+++ I V V+ F Y
Sbjct: 17 LTHQVVCINNVNFQRKSVIGYVELTIFPTVVNLNRIKLNSKQCRIYRVRVNDLEAPFIYN 76
Query: 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALEREL---VPNLLINCCKPFKGLTDQ 134
+ +E + R++ S+ A +AV A EL VP+ L +G +
Sbjct: 77 DPTLEVCHHESKQRNLNYFSSAYTAAVSAVDPDAGNGELSIKVPSELWK-----QGDEMK 131
Query: 135 IEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCID 194
+ ++ +E LD +PK + V D E H NQ +R WFPC+D
Sbjct: 132 VMKVYIEFSLD---QPKGGLHFVVPDVEGNMAERAAH----VFSFGNQ-NSSRFWFPCVD 183
Query: 195 DTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254
++ C + LEFTV +++AVS G L+ V + D +KTY Y L +P +A I++AV P
Sbjct: 184 SYSELCTWKLEFTVDASMVAVSCGDLVETVYTHDMR-KKTYHYMLPIPTAAPNISMAVGP 242
Query: 255 FEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM 314
FE+L D + ++H CLP + + +T+ + H F YE L ++P+ +K VF+ E
Sbjct: 243 FEILVDPYMHEVTHFCLPQLLPLLKHTMSYLHEIFEFYEEILTCRYPYSCFKTVFVD-EA 301
Query: 315 AVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLD 374
V S++ A+M IFS+ +L+ +IDQ T L+ ALA+Q+FG +I+ DEW+L
Sbjct: 302 YVQVSSY-ASMSIFSTNLLHSGLIIDQTPMTRSFLAQALAQQFFGCFISRMSWADEWVLK 360
Query: 375 GLAGFLTDSFIKKFLGNNEARY-----------RRYKANCAVCKADDSGATALSSSASCK 423
G++G++ ++KK G NE R+ K + SG +
Sbjct: 361 GISGYIYGLYLKKTFGVNEYRHWIKEELDKIVEYELKIGGVLLHPTFSGGKEKDNPTPHL 420
Query: 424 DLYGTQCIGI---FGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVR---- 476
+ + K+ CK+ +++++E ++ F ++ ++S A AS +
Sbjct: 421 HFSIKHPHTLSWEYYKMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKYQSH 480
Query: 477 -----TLSTKEF-RHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELA 530
+ST F + +N G P +K+ WV G F++N+++N++EL
Sbjct: 481 MWSQMLVSTSGFLKSISNVSGKDIGPLIKQ----WVDQSGVVKFFGSFAFNRKRNVLELE 536
Query: 531 VLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQL 590
+ +D T G + G + + V ELDG ++H L + ++ +
Sbjct: 537 IRQDYT------------------SSGTQKYVGPIKVTVQELDGSFNH-TLQIEENSLK- 576
Query: 591 LEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRS-SMESPLSWIRADPEMEYLA 649
+I CHSK + K NG+ V +D+ + +SPL WIR DP+M L
Sbjct: 577 HDIPCHSKSRRNKKKKIPLM--------NGEEV-DMDLSAMDADSPLLWIRIDPDMSILR 627
Query: 650 EIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRI 709
++ F Q MW QL + DVVAQ +AI ALE P + L + L + F++VR+
Sbjct: 628 KVEFEQADFMWQYQLRYERDVVAQEEAILALEKFP--TPPSRRALTDILEQDQCFYKVRM 685
Query: 710 EAAYALANTA-SEETDWAGLLHLVKFYKSRRF--DENIGLPRPNDFRDFSEYFVLEVIAL 766
A + LA A S + W G + + +R F + + N+F F YF+ + I +
Sbjct: 686 HACFCLAKIANSMVSTWTGPPAMKSLF-TRMFCCKSCPNIVKTNNFISFQSYFLQKTIPV 744
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Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter. Danio rerio (taxid: 7955) |
| >sp|Q5ZIT8|TAF2_CHICK Transcription initiation factor TFIID subunit 2 OS=Gallus gallus GN=TAF2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens GN=TAF2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q8C176|TAF2_MOUSE Transcription initiation factor TFIID subunit 2 OS=Mus musculus GN=Taf2 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q24325|TAF2_DROME Transcription initiation factor TFIID subunit 2 OS=Drosophila melanogaster GN=Taf2 PE=1 SV=2 | Back alignment and function description |
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| >sp|P87121|TAF2_SCHPO Transcription initiation factor TFIID subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf2 PE=3 SV=3 | Back alignment and function description |
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| >sp|P23255|TAF2_YEAST Transcription initiation factor TFIID subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q97VF1|APE1_SULSO Probable aminopeptidase 1 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ape1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P95928|APE2_SULSO Leucyl aminopeptidase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ape2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q07075|AMPE_HUMAN Glutamyl aminopeptidase OS=Homo sapiens GN=ENPEP PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 767 | ||||||
| 225455844 | 1325 | PREDICTED: transcription initiation fact | 0.992 | 0.574 | 0.803 | 0.0 | |
| 225455842 | 1345 | PREDICTED: transcription initiation fact | 0.992 | 0.565 | 0.803 | 0.0 | |
| 224132980 | 1359 | predicted protein [Populus trichocarpa] | 0.990 | 0.559 | 0.793 | 0.0 | |
| 356513902 | 1388 | PREDICTED: transcription initiation fact | 0.993 | 0.548 | 0.776 | 0.0 | |
| 356563105 | 1388 | PREDICTED: transcription initiation fact | 0.993 | 0.548 | 0.777 | 0.0 | |
| 356563107 | 1368 | PREDICTED: transcription initiation fact | 0.993 | 0.557 | 0.777 | 0.0 | |
| 449439379 | 1362 | PREDICTED: transcription initiation fact | 0.980 | 0.552 | 0.715 | 0.0 | |
| 449516818 | 1362 | PREDICTED: transcription initiation fact | 0.980 | 0.552 | 0.715 | 0.0 | |
| 297842145 | 1390 | membrane alanyl aminopeptidase [Arabidop | 0.993 | 0.548 | 0.707 | 0.0 | |
| 22330618 | 1390 | TBP-associated factor 2 [Arabidopsis tha | 0.993 | 0.548 | 0.706 | 0.0 |
| >gi|225455844|ref|XP_002273351.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1280 bits (3312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/768 (80%), Positives = 681/768 (88%), Gaps = 7/768 (0%)
Query: 1 MAKPRKPKNEE-TKVENSG--AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHA 57
MAKPRKPK ++ TK ENS AVVRHQKLCLSID++K +IYGYTELEIAVPDIGIVGLHA
Sbjct: 1 MAKPRKPKTDDNTKPENSNSRAVVRHQKLCLSIDIDKRRIYGYTELEIAVPDIGIVGLHA 60
Query: 58 ENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELV 117
ENL IESV VDGEPTEFE+YPH HQ+ E+EKRW S++S+ SSAAD A+++Y+SALEREL
Sbjct: 61 ENLVIESVSVDGEPTEFEFYPH-HQHTESEKRWSSVLSA-SSAADVASSMYVSALERELD 118
Query: 118 PNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNAL 177
PNLLI CCKP K ++Q Q +LEN L SS EPKQNVKLVR+DYWVE+ E GIHF+ N L
Sbjct: 119 PNLLIMCCKPEKSASEQQGQQSLENGLHSSGEPKQNVKLVRVDYWVERAETGIHFEDNVL 178
Query: 178 HTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVY 237
HTDNQIRRARCWFPC+DDT+Q CCYDLEFTV+ NL+AVS GSLLYQVLSKDDPPRKTYVY
Sbjct: 179 HTDNQIRRARCWFPCMDDTSQCCCYDLEFTVAHNLVAVSTGSLLYQVLSKDDPPRKTYVY 238
Query: 238 RLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLD 297
+L+VPV+A+WI LAVAPFEVLPD H L+S++CLPAN+ K+ NTV FFH+AFSHYE YL
Sbjct: 239 KLNVPVTARWIQLAVAPFEVLPDRHSGLLSYLCLPANLPKLWNTVGFFHSAFSHYEDYLS 298
Query: 298 AKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQW 357
A FPFGSYKQVF+APEMA+SS T GA+M IFSSQIL+DEKVIDQ IDT IKL++ALARQW
Sbjct: 299 ASFPFGSYKQVFIAPEMAISSLTLGASMSIFSSQILFDEKVIDQTIDTRIKLAYALARQW 358
Query: 358 FGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALS 417
FGV+I+PE PNDEWLLDGLAGFLTDSF+K+FLGNNEARYRRYKANCAVCKADDSGATALS
Sbjct: 359 FGVFISPEAPNDEWLLDGLAGFLTDSFVKRFLGNNEARYRRYKANCAVCKADDSGATALS 418
Query: 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS-PVR 476
SSASCKDLYGTQCIG++GKIRS KSVAILQMLEKQMG FRKILQ I+ RAQ + +R
Sbjct: 419 SSASCKDLYGTQCIGLYGKIRSWKSVAILQMLEKQMGPESFRKILQTIVFRAQDTTRSLR 478
Query: 477 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536
TLSTKEFRHFANKVGNLERPFLKEFFPRWVG+CGCPVLR G SYNKRKN+VELAVLR CT
Sbjct: 479 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGSCGCPVLRAGLSYNKRKNLVELAVLRGCT 538
Query: 537 VKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCH 596
PD+ T VL+ N DSENR+ DIGWPGMMSIRVHELDGMYDHPILPMAG+ WQLLEIQCH
Sbjct: 539 AAPDTNTMVLNGNIDSENREVDIGWPGMMSIRVHELDGMYDHPILPMAGETWQLLEIQCH 598
Query: 597 SKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP 656
SKLAARR KPKKGSKPDG DDNGD V +DMRS+ ESPL W+R DPE+EYLAEIHFNQP
Sbjct: 599 SKLAARRFQKPKKGSKPDGSDDNGD-VPAVDMRSNTESPLLWLRVDPELEYLAEIHFNQP 657
Query: 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALA 716
QMWINQLE+D DVVAQAQAIA LEALP LSF+VVN LNNFLSDSKAFWRVRIEAA+ALA
Sbjct: 658 AQMWINQLERDKDVVAQAQAIATLEALPQLSFSVVNALNNFLSDSKAFWRVRIEAAFALA 717
Query: 717 NTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEVI 764
NTASEETDWAGLLHLVKFYKSRRFD NIGLP+PNDF DF EYFVLE I
Sbjct: 718 NTASEETDWAGLLHLVKFYKSRRFDANIGLPKPNDFHDFPEYFVLEAI 765
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455842|ref|XP_002273382.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224132980|ref|XP_002321457.1| predicted protein [Populus trichocarpa] gi|222868453|gb|EEF05584.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356513902|ref|XP_003525647.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356563105|ref|XP_003549806.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356563107|ref|XP_003549807.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449439379|ref|XP_004137463.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449516818|ref|XP_004165443.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297842145|ref|XP_002888954.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] gi|297334795|gb|EFH65213.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|22330618|ref|NP_177536.2| TBP-associated factor 2 [Arabidopsis thaliana] gi|20856938|gb|AAM26691.1| At1g73960/F2P9_17 [Arabidopsis thaliana] gi|332197409|gb|AEE35530.1| TBP-associated factor 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 767 | ||||||
| TAIR|locus:2031571 | 1390 | TAF2 "TBP-associated factor 2" | 0.993 | 0.548 | 0.665 | 2.1e-283 | |
| DICTYBASE|DDB_G0292724 | 2044 | taf2 "TFIID subunit" [Dictyost | 0.367 | 0.137 | 0.353 | 2.2e-83 | |
| ZFIN|ZDB-GENE-030131-3207 | 1191 | taf2 "TAF2 RNA polymerase II, | 0.470 | 0.303 | 0.299 | 2.1e-54 | |
| UNIPROTKB|F6UTN8 | 1206 | TAF2 "Uncharacterized protein" | 0.470 | 0.299 | 0.283 | 1.3e-52 | |
| UNIPROTKB|E2QT19 | 1202 | TAF2 "Uncharacterized protein" | 0.468 | 0.298 | 0.284 | 2.9e-52 | |
| UNIPROTKB|Q6P1X5 | 1199 | TAF2 "Transcription initiation | 0.470 | 0.301 | 0.281 | 3.9e-52 | |
| UNIPROTKB|Q5ZIT8 | 1168 | TAF2 "Transcription initiation | 0.470 | 0.309 | 0.283 | 5.3e-52 | |
| MGI|MGI:2443028 | 1104 | Taf2 "TAF2 RNA polymerase II, | 0.466 | 0.324 | 0.283 | 1.4e-51 | |
| UNIPROTKB|F1MME0 | 1202 | TAF2 "Uncharacterized protein" | 0.470 | 0.300 | 0.283 | 5.1e-51 | |
| UNIPROTKB|F1LNY6 | 1200 | Taf2 "Protein Taf2" [Rattus no | 0.466 | 0.298 | 0.280 | 1.1e-50 |
| TAIR|locus:2031571 TAF2 "TBP-associated factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2723 (963.6 bits), Expect = 2.1e-283, P = 2.1e-283
Identities = 512/769 (66%), Positives = 598/769 (77%)
Query: 1 MAKPRKPKNEET---KV-ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLH 56
MAK RKPKNEE K EN+GA V HQKL LSID +K QIYGYTELE++VPDIGIVGLH
Sbjct: 1 MAKARKPKNEEAPGAKTSENTGAKVLHQKLFLSIDFKKRQIYGYTELEVSVPDIGIVGLH 60
Query: 57 AENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRXXXXXXXXXXXXXXXXXXXXLEREL 116
AENLGIESVLVDGEPT FEYYPH HQN E E W L+RE
Sbjct: 61 AENLGIESVLVDGEPTVFEYYPH-HQNSETESNWNSVSDPASAADAAAMEYVGV-LKRED 118
Query: 117 VPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNA 176
NLLINCCKP K L++Q++ + LEN SS E KQNVKL+RI+YWVEK+E GIHFDGN
Sbjct: 119 TANLLINCCKPSKDLSEQLDSVTLENGSQSSGEAKQNVKLIRINYWVEKIESGIHFDGNI 178
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
+HTDNQ+RRARCWFPCIDD RC +DLEFTV N +AVS G LLYQV+ K+D +KTYV
Sbjct: 179 VHTDNQMRRARCWFPCIDDEYHRCSFDLEFTVPHNFVAVSVGKLLYQVMCKEDTTQKTYV 238
Query: 237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
Y L +P++ +W++L P E+LPD L+S++CLP ++S++ NT+EFFH A+S+YE YL
Sbjct: 239 YELAIPIAPRWVSLVAGPLEILPDQTNFLISNLCLPHDLSRLRNTMEFFHEAYSYYEDYL 298
Query: 297 DAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQ 356
A FPFG YKQVFL PEM V+SST GA++ IFSS ILYDE+VIDQ IDT IKL+ ALA+Q
Sbjct: 299 SANFPFGFYKQVFLPPEMVVTSSTSGASLSIFSSHILYDERVIDQTIDTRIKLASALAKQ 358
Query: 357 WFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATAL 416
WFGVYITPE PND+WLLDGLAGFLTD FIK+FLGNNEARYRRYKANCAVCKADDSGA L
Sbjct: 359 WFGVYITPESPNDDWLLDGLAGFLTDMFIKQFLGNNEARYRRYKANCAVCKADDSGAMCL 418
Query: 417 SSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS-PV 475
SSS SC+DL+GT IG+ GKIRS KS A+LQMLEKQMGS+ FRKILQ IISRA+ S +
Sbjct: 419 SSSPSCRDLFGTHSIGMHGKIRSWKSGAVLQMLEKQMGSDSFRKILQKIISRAKDPSNSI 478
Query: 476 RTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDC 535
R+LSTKEFR FANK+GNLERPFLKEFF RWV + GCPVLR+G SYNKRKN VE+A LR+C
Sbjct: 479 RSLSTKEFRQFANKIGNLERPFLKEFFQRWVASYGCPVLRIGLSYNKRKNNVEMAALREC 538
Query: 536 TVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQC 595
T D+R V+ + +DSE+RD D GWPG+MSIRV+ELDGM DHP LPMAGD WQLLE+ C
Sbjct: 539 TAALDARLSVIGATSDSESRDVDAGWPGIMSIRVYELDGMSDHPKLPMAGDRWQLLELPC 598
Query: 596 HSXXXXXXXXXXXXGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQ 655
HS G KPDG +DN DA+A L+ ++S+ESPL+WI+ADPEMEY+AEIH +Q
Sbjct: 599 HSKLAAKRYQKPKKGGKPDGAEDNVDAIAPLENKTSIESPLAWIKADPEMEYIAEIHLHQ 658
Query: 656 PVQMWINQLEKDGDVVXXXXXXXXXXXXPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYAL 715
P+QMW+NQLEKDGDVV SF++VN L N L+DSK FWR+RI AA+AL
Sbjct: 659 PLQMWVNQLEKDGDVVAQAQAIASLEALKQHSFSIVNALKNVLTDSKVFWRIRIAAAFAL 718
Query: 716 ANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEVI 764
A TASEE+DWAGL HL+KFYKSRRFD IGLP+PNDFRDF EYFVLE I
Sbjct: 719 AKTASEESDWAGLQHLIKFYKSRRFDAEIGLPKPNDFRDFPEYFVLEAI 767
|
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| DICTYBASE|DDB_G0292724 taf2 "TFIID subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-3207 taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6UTN8 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QT19 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6P1X5 TAF2 "Transcription initiation factor TFIID subunit 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5ZIT8 TAF2 "Transcription initiation factor TFIID subunit 2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:2443028 Taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MME0 TAF2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LNY6 Taf2 "Protein Taf2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.11 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00017623001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (1256 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 767 | |||
| cd09839 | 507 | cd09839, M1_TAF2, TATA binding protein (TBP) assoc | 0.0 | |
| cd09595 | 407 | cd09595, M1, Peptidase M1 family contains aminopep | 2e-22 | |
| cd09603 | 415 | cd09603, M1_APN_4, Peptidase M1 family Aminopeptid | 4e-21 | |
| COG0308 | 859 | COG0308, PepN, Aminopeptidase N [Amino acid transp | 1e-13 | |
| cd09602 | 438 | cd09602, M1_APN_3, Peptidase M1 family containing | 8e-10 | |
| pfam01433 | 390 | pfam01433, Peptidase_M1, Peptidase family M1 | 2e-07 | |
| pfam13646 | 88 | pfam13646, HEAT_2, HEAT repeats | 1e-04 | |
| TIGR02412 | 831 | TIGR02412, pepN_strep_liv, aminopeptidase N, Strep | 3e-04 | |
| cd09604 | 435 | cd09604, M1_APN_5, Peptidase M1 family containing | 9e-04 | |
| cd09599 | 442 | cd09599, M1_LTA4H, Peptidase M1 family contains le | 0.003 |
| >gnl|CDD|189018 cd09839, M1_TAF2, TATA binding protein (TBP) associated factor 2 | Back alignment and domain information |
|---|
Score = 578 bits (1492), Expect = 0.0
Identities = 199/533 (37%), Positives = 286/533 (53%), Gaps = 54/533 (10%)
Query: 20 VVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTEFEYY 77
V HQK+ +SID + I GYTEL I ++ + L+A+ I SV V+GEP +F Y
Sbjct: 1 KVLHQKVEISIDFFRRSIIGYTELTILPLSKNLRQIRLNAKQCRILSVEVNGEPAKFTYN 60
Query: 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQ 137
Q + ++ W+S++ A+DA+ + LLI+ K +
Sbjct: 61 DP-TQELCRDEPWKSVLQH---ASDASLSAVSYVDLDANNGELLISVPKEVR-------- 108
Query: 138 MNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDG--------NALHTDNQI-RRARC 188
+Q V VRID+ VE+ + G+HF G + T N I ARC
Sbjct: 109 ---------KLVDEQKVLRVRIDFSVEQPKGGLHFVGPDPEAERYPHVFTYNSIHGSARC 159
Query: 189 WFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI 248
WFPC+DD +Q C ++LEFTV N++AVS+G LL QV +D +KTY Y L VP +A+ I
Sbjct: 160 WFPCVDDPSQLCTWELEFTVPANMVAVSSGDLLEQVYDTEDMRKKTYHYALTVPTAAQNI 219
Query: 249 TLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV 308
LAV PFE+L D H ++H CLP + ++ NT + H AF +E YL +FPF SYKQV
Sbjct: 220 GLAVGPFEILVDPHAHEITHFCLPGLLPELKNTTSYLHEAFEFFEEYLSCRFPFSSYKQV 279
Query: 309 FLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPN 368
F+ E A +++ A++ IFSS +LY E +IDQ DT KL++ALA QWFG +I+PE +
Sbjct: 280 FV-DEAAEDVTSY-ASLSIFSSNLLYPEDIIDQTYDTRRKLAYALASQWFGCFISPEAWS 337
Query: 369 DEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKD---- 424
DEWLL G+AG++T F+KK GNNE R+R K VC+ D L
Sbjct: 338 DEWLLKGIAGYITGLFVKKLFGNNEYRFRIKKELDRVCEYDIKRPGILLDPIILPGKLPL 397
Query: 425 ----LYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS------- 473
+ C ++G+ + K+ +L+MLE+++G F ++L I+SRA AS
Sbjct: 398 NPDPKHPHTCSPLYGEFMALKAHLVLRMLERRIGKESFLQVLNKILSRALQASQQKTQSG 457
Query: 474 --PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRK 524
LST+ F KV LK FF +WV GCP R+ F +N+++
Sbjct: 458 DWSQMLLSTESFFKTCEKV---SGKELKVFFQQWVYGSGCPKFRVSFRFNRKR 507
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This family includes TATA binding protein (TBP) associated factor 2 (TAF2, TBP-associated factor TAFII150, transcription initiation factor TFIID subunit 2, RNA polymerase II TBP-associated factor subunit B), and has homology to the aminopeptidase N (APN) subfamily, belonging to the M1 gluzincin family. TAF2 is part of the TFIID multidomain subunit complex essential for transcription of most protein-encoded genes by RNA polymerase II. TAF2 is known to interact with the initiator element (Inr) found at the transcription start site of many genes, thus possibly playing a key role in promoter binding as well as start-site selection. Image analysis has shown TAF2 to form a complex with TAF1 and TBP, inferring its role in promoter recognition. Peptidases in the M1 family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. TAF2, however, does not seem to contain any of the active site residues. Length = 507 |
| >gnl|CDD|189002 cd09595, M1, Peptidase M1 family contains aminopeptidase N and leukotriene A4 hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|189010 cd09603, M1_APN_4, Peptidase M1 family Aminopeptidase N | Back alignment and domain information |
|---|
| >gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism] | Back alignment and domain information |
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| >gnl|CDD|189009 cd09602, M1_APN_3, Peptidase M1 family containing Aminopeptidase N | Back alignment and domain information |
|---|
| >gnl|CDD|216501 pfam01433, Peptidase_M1, Peptidase family M1 | Back alignment and domain information |
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| >gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats | Back alignment and domain information |
|---|
| >gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans type | Back alignment and domain information |
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| >gnl|CDD|189011 cd09604, M1_APN_5, Peptidase M1 family containing bacterial Aminopeptidase N | Back alignment and domain information |
|---|
| >gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4 hydrolase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 767 | |||
| KOG1932 | 1180 | consensus TATA binding protein associated factor [ | 100.0 | |
| KOG1046 | 882 | consensus Puromycin-sensitive aminopeptidase and r | 100.0 | |
| PRK14015 | 875 | pepN aminopeptidase N; Provisional | 100.0 | |
| TIGR02412 | 831 | pepN_strep_liv aminopeptidase N, Streptomyces livi | 100.0 | |
| TIGR02414 | 863 | pepN_proteo aminopeptidase N, Escherichia coli typ | 100.0 | |
| TIGR02411 | 601 | leuko_A4_hydro leukotriene A-4 hydrolase/aminopept | 100.0 | |
| COG0308 | 859 | PepN Aminopeptidase N [Amino acid transport and me | 100.0 | |
| PF01433 | 390 | Peptidase_M1: Peptidase family M1 This is family M | 100.0 | |
| KOG1047 | 613 | consensus Bifunctional leukotriene A4 hydrolase/am | 100.0 | |
| PF13485 | 128 | Peptidase_MA_2: Peptidase MA superfamily | 98.96 | |
| COG3975 | 558 | Predicted protease with the C-terminal PDZ domain | 98.58 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.5 | |
| PF11838 | 324 | ERAP1_C: ERAP1-like C-terminal domain; InterPro: I | 95.45 | |
| PF07607 | 128 | DUF1570: Protein of unknown function (DUF1570); In | 95.2 | |
| PF10460 | 366 | Peptidase_M30: Peptidase M30; InterPro: IPR019501 | 94.92 | |
| PF05299 | 122 | Peptidase_M61: M61 glycyl aminopeptidase; InterPro | 94.74 | |
| KOG1932 | 1180 | consensus TATA binding protein associated factor [ | 92.94 | |
| PF04450 | 205 | BSP: Peptidase of plants and bacteria; InterPro: I | 90.65 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.77 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 83.83 | |
| PF10026 | 195 | DUF2268: Predicted Zn-dependent protease (DUF2268) | 80.6 |
| >KOG1932 consensus TATA binding protein associated factor [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-114 Score=970.08 Aligned_cols=715 Identities=38% Similarity=0.627 Sum_probs=558.9
Q ss_pred CCCCCCCCC----CCCCCCCCCeEEEEEEEEEE-EeccCcEEEEEEEEEEEc--CCcceEEEeccCceeeEEEEcCeeee
Q 004221 1 MAKPRKPKN----EETKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE 73 (767)
Q Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~i~i~~--~~~~~I~L~~~~l~I~~v~v~g~~~~ 73 (767)
|++.|++++ ++..++++...++||++.|+ ||+.++++.|.++|+|.+ +++..|.|||++|.|.+|.|+|....
T Consensus 3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~ 82 (1180)
T KOG1932|consen 3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK 82 (1180)
T ss_pred cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence 445455444 44556777778999999999 999999999999999984 67999999999999999999999899
Q ss_pred eeeCCCCcccchhhhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcC
Q 004221 74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN 153 (767)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~ 153 (767)
|.|+++...... +..|..+. .+........-.|... ..+.++|.|.++++.... +.+ ..
T Consensus 83 f~y~d~~q~~~~-~~~~~~~l-~~~s~~~~~~~~y~~l--~~~~g~L~I~ipk~~~~~--~ee---------------~~ 141 (1180)
T KOG1932|consen 83 FIYNDPTQNDCT-DEIWQRVL-DPASQSHFLAVQYEDL--DEDNGELLIKIPKESKKV--GEE---------------LK 141 (1180)
T ss_pred eeecchhhhhhh-hhhhhhhh-hhhhhhhhHHHhhhcc--ccCCCeEEEEcCchhhhh--hhh---------------cc
Confidence 999987443331 11122111 1101111111122221 123578999876542111 110 01
Q ss_pred ceEEEEEEEEecCCcceEEEcc---------eEeccCcc--CCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccc
Q 004221 154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY 222 (767)
Q Consensus 154 ~~~~~~~y~~~~~~~G~~f~~~---------~~~T~~ep--~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~ 222 (767)
...++|+|.+.+|..|++|++. .++|.+.+ .+||+||||+|+++.+|||+|++++|++++++|+|++.+
T Consensus 142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~ 221 (1180)
T KOG1932|consen 142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE 221 (1180)
T ss_pred ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence 2346789999999999999764 24454433 368999999999999999999999999999999999999
Q ss_pred eeeccCCCCceEEEEecCCCccceeeEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 004221 223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF 302 (767)
Q Consensus 223 ~~~~~~~~~~~~~~f~~t~p~s~yliafavg~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~ 302 (767)
++.++ |-.+++++|+.+.|+++..||||||+|+.+.......++.||.|+..+.+++++-...++++|||++||..|||
T Consensus 222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 98876 67899999999999999999999999999977778899999999999999999999999999999999988999
Q ss_pred CCccEEEECCCCcccccccccchhhhccccccCccccchhhhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHH
Q 004221 303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (767)
Q Consensus 303 ~k~~~v~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~ 382 (767)
+.|++||||..+.-- ...++|.++++++||+.+++|+.+.++..+|..||.||||.++||..|+|.||.+|+|.|+..
T Consensus 301 ~~~k~VFvd~~~~~i--~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~ 378 (1180)
T KOG1932|consen 301 SCYKTVFVDEAAVEI--SSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG 378 (1180)
T ss_pred ceeeEEEecCCccee--eecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence 999999998644322 223368999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCchHHHHHHHHhcccceeccc-CCCcccCCCCccccCCCCcccccccceeeehHHHHHHHHHHhh----CHHH
Q 004221 383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF 457 (767)
Q Consensus 383 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~l----G~e~ 457 (767)
+|+++++|+|+|||+.++..++++..+. .++..+.. |++++. .| -.|+++.+|.+.+.+ |.-.
T Consensus 379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s~---k~----~~~~~~~lh~~~r~~~~~s~~~~ 446 (1180)
T KOG1932|consen 379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPSM---KF----KLKGPFHLHISIRHLHTLSGSYG 446 (1180)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcch---hh----cccCcceeeecccceeecChhHH
Confidence 9999999999999999999998888776 44444431 111110 01 134444444444333 2222
Q ss_pred HHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHhcCCCcccHHhHHHhhccCCCceEEEEEEEEecCCcEEEEEEEeecc
Q 004221 458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (767)
Q Consensus 458 F~~~L~~yl~~~~~~~-~~~~~st~~f~~~~~~~~~~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~ 536 (767)
....++..+...+.++ .+...+.+.|.++++.++. ..++.||+.|++..|+|.+.+...||++++.|++.+.|...
T Consensus 447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~---~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~ 523 (1180)
T KOG1932|consen 447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASK---MLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR 523 (1180)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh---hHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence 2333333333333332 1112344455555555542 12689999999999999999999999999999999999655
Q ss_pred CCCCCCCc-cc------cCCCCCCCCCCC---CCcceeeEEEEeccCCcccccccccCCCcceeEeeeecccchhhhhcC
Q 004221 537 VKPDSRTP-VL------SSNTDSENRDGD---IGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK 606 (767)
Q Consensus 537 ~~~~~~~~-~~------~~~~~~~~~~~~---~~~~~plti~~~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~~~ 606 (767)
+....... .+ ++......++.+ ..|+||||||+||.||+|+|++ +|. +.|+++||+||+| +|.+|
T Consensus 524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi~-~~~~k~dI~chsK---~R~~k 598 (1180)
T KOG1932|consen 524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QID-GDFTKLDIQCHSK---SRRQK 598 (1180)
T ss_pred hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Eec-Ccccccceeeccc---ccccC
Confidence 43322211 11 010111111222 4599999999999999999986 344 5599999999999 45567
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCeeEEEecCCCceeEEEeecCchHHHHHHHcccCChHHHHHHHHHHHcCCCC
Q 004221 607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL 686 (767)
Q Consensus 607 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir~d~~~~~~~~v~~~~~~~~~~~qL~~d~dv~aq~~a~~~l~~~~~~ 686 (767)
+||.+..+|+|++.| ++.+| .++|++|||+|||++|||.++++||++||++||++||||+||+|||++|...|..
T Consensus 599 kKk~~l~sgEE~e~d-l~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~ 673 (1180)
T KOG1932|consen 599 KKKVPLMSGEEIEMD-LTNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST 673 (1180)
T ss_pred CcCCCCCChhhhccc-ccccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence 778788888887766 55554 3789999999999999999999999999999999999999999999999998754
Q ss_pred chhHhhHHHHhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChhHHHHhhcccC
Q 004221 687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEVIAL 766 (767)
Q Consensus 687 s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~~~~i~~ 766 (767)
..+++|.|+|.|++||||||++||.+|+++++++.+|.|.+||+++|+++||+.+++|||||||+||+.||||||||.
T Consensus 674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~ 751 (1180)
T KOG1932|consen 674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV 751 (1180)
T ss_pred --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence 566999999999999999999999999999999999999999999999999999999999999999999999999995
|
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| >KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK14015 pepN aminopeptidase N; Provisional | Back alignment and domain information |
|---|
| >TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type | Back alignment and domain information |
|---|
| >TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type | Back alignment and domain information |
|---|
| >TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase | Back alignment and domain information |
|---|
| >COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification | Back alignment and domain information |
|---|
| >KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF13485 Peptidase_MA_2: Peptidase MA superfamily | Back alignment and domain information |
|---|
| >COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G [] | Back alignment and domain information |
|---|
| >PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria | Back alignment and domain information |
|---|
| >PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG1932 consensus TATA binding protein associated factor [Transcription] | Back alignment and domain information |
|---|
| >PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 767 | ||||
| 3cia_A | 605 | Crystal Structure Of Cold-Aminopeptidase From Colwe | 4e-07 | ||
| 4e36_A | 967 | Crystal Structure Of The Human Endoplasmic Reticulu | 6e-06 | ||
| 3se6_A | 967 | Crystal Structure Of The Human Endoplasmic Reticulu | 8e-06 | ||
| 3mdj_A | 921 | Er Aminopeptidase, Erap1, Bound To The Zinc Aminope | 1e-05 | ||
| 4fyq_A | 903 | Human Aminopeptidase N (Cd13) Length = 903 | 3e-05 | ||
| 2yd0_A | 897 | Crystal Structure Of The Soluble Domain Of Human En | 4e-05 | ||
| 3qnf_A | 954 | Crystal Structure Of The Open State Of Human Endopl | 6e-05 | ||
| 3q7j_A | 780 | Engineered Thermoplasma Acidophilum F3 Factor Mimic | 1e-04 | ||
| 4f5c_A | 959 | Crystal Structure Of The Spike Receptor Binding Dom | 1e-04 | ||
| 4hol_A | 908 | Crystal Structure Of Porcine Aminopeptidase-N Compl | 1e-04 | ||
| 4fke_A | 909 | Crystal Structure Of Porcine Aminopeptidase-N Lengt | 1e-04 | ||
| 4h5h_A | 908 | Crystal Structure Of Porcine Aminopeptidase-N Compl | 1e-04 | ||
| 1z1w_A | 780 | Crystal Structures Of The Tricorn Interacting Facor | 2e-04 |
| >pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia Psychrerythraea Length = 605 | Back alignment and structure |
|
| >pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Variant N392k Length = 967 | Back alignment and structure |
| >pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Length = 967 | Back alignment and structure |
| >pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase Inhibitor, Bestatin Length = 921 | Back alignment and structure |
| >pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13) Length = 903 | Back alignment and structure |
| >pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 897 | Back alignment and structure |
| >pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 954 | Back alignment and structure |
| >pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human Aminopeptidase N (Apn) As A Target For Anticancer Drug Development Length = 780 | Back alignment and structure |
| >pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of A Porcine Respiratory Coronavirus In Complex With The Pig Aminopeptidase N Ectodomain Length = 959 | Back alignment and structure |
| >pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Poly- Alanine Length = 908 | Back alignment and structure |
| >pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Length = 909 | Back alignment and structure |
| >pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Cleaved Poly-Alanine Length = 908 | Back alignment and structure |
| >pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3 From Thermoplasma Acidophilum, A Zinc Aminopeptidase In Three Different Conformations Length = 780 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide, hydrolysis, hydrolase, leukotriene biosynthesis, metal-binding, metalloprotease; 1.47A {Homo sapiens} SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L* 2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ... Length = 616 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 2e-21
Identities = 63/419 (15%), Positives = 132/419 (31%), Gaps = 38/419 (9%)
Query: 143 KLDSSAEPKQNVKLVRIDYWVEKVEVGIHF------DGNA---LHTDNQIRRARCWFPCI 193
L + Q + + I + + + G L + Q R PC
Sbjct: 95 SLPIALSKNQEIV-IEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQ 153
Query: 194 DDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVA 253
D + + Y E +V + L+A+ + + +DP RK Y + VP+ I L V
Sbjct: 154 DTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVG 213
Query: 254 PFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPE 313
E ++ V K + E L + +G Y + L P
Sbjct: 214 ALESRQIGPRT--LVWSEKEQVEKSAYEFSETESMLKIAE-DLGGPYVWGQYDLLVLPPS 270
Query: 314 MAVSSSTFGAAMG----IF--SSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELP 367
+G M F + + D+ + + ++ W G +T +
Sbjct: 271 FP-----YG-GMENPCLTFVTPTLLAGDKSL----SNVIAHQ---ISHSWTGNLVTNKTW 317
Query: 368 NDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYG 427
+ WL +G +L + G + + + + + DL
Sbjct: 318 DHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTD 377
Query: 428 TQCIGIFGKIRSCKSVAILQMLEKQM-GSNFFRKILQNIISRAQGASPVRTLSTKEFR-H 485
+ + K A+L LE+ + G F L+ + + S ++T +++
Sbjct: 378 IDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDF 433
Query: 486 FANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTP 544
+ + + + W+ + G P ++ + + L+ + D +
Sbjct: 434 LYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSF 492
|
| >3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Length = 605 | Back alignment and structure |
|---|
| >2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 | Back alignment and structure |
|---|
| >2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 | Back alignment and structure |
|---|
| >3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Length = 891 | Back alignment and structure |
|---|
| >2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Length = 867 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Length = 889 | Back alignment and structure |
|---|
| >3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} Length = 967 | Back alignment and structure |
|---|
| >1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Length = 780 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 767 | |||
| 3se6_A | 967 | Endoplasmic reticulum aminopeptidase 2; thermolysi | 100.0 | |
| 4fke_A | 909 | Aminopeptidase N; zinc aminopeptidase, hydrolase; | 100.0 | |
| 2xdt_A | 897 | Endoplasmic reticulum aminopeptidase 1; glycoprote | 100.0 | |
| 3ebh_A | 889 | PFA-M1, M1 family aminopeptidase; hydrolase, metal | 100.0 | |
| 3b34_A | 891 | Aminopeptidase N; protease, hydrolase, thermolysin | 100.0 | |
| 1z5h_A | 780 | Tricorn protease interacting factor F3; zinc amino | 100.0 | |
| 2gtq_A | 867 | Aminopeptidase N; alanine aminopeptidase, M1 famil | 100.0 | |
| 3u9w_A | 608 | Leukotriene A-4 hydrolase; hydrolase-hydrolase inh | 100.0 | |
| 3cia_A | 605 | Cold-active aminopeptidase; psychrohilic, hydrolas | 100.0 | |
| 2xq0_A | 632 | LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B | 100.0 | |
| 4fgm_A | 597 | Aminopeptidase N family protein; structural genomi | 99.92 | |
| 3rjo_A | 419 | Endoplasmic reticulum aminopeptidase 1; ERAP1, hyd | 98.78 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 83.35 |
| >3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-85 Score=791.30 Aligned_cols=588 Identities=16% Similarity=0.206 Sum_probs=447.3
Q ss_pred CCCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCee----------eee-eeCCC
Q 004221 12 TKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEP----------TEF-EYYPH 79 (767)
Q Consensus 12 ~~~~~~~~~~~hy~l~L~id~~~~~~~G~v~i~i~~-~~~~~I~L~~~~l~I~~v~v~g~~----------~~~-~~~~~ 79 (767)
.++....+.|.||+|.|++|+++.+|+|+|+|++.+ .+++.|.||+++|+|++|+|++.. +.. .+.
T Consensus 66 ~~RLP~~v~P~hY~L~L~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~I~~v~v~~~~~~~~~~~~~~~~~~~~~-- 143 (967)
T 3se6_A 66 ELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYP-- 143 (967)
T ss_dssp CSSCCTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCCSEEEEECSSCEEEEEEEEECC---CCSSCEECEEEEEG--
T ss_pred cccCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEEEcCCCEEEEECCCCEEEEEEEeccCCcccccccceeeeEEec--
Confidence 456788999999999999999999999999999997 568999999999999999986321 111 000
Q ss_pred CcccchhhhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhHhhhhcccCCCCCCCCCcC-ceEEE
Q 004221 80 NHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVR 158 (767)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~~~~~~~~~~~~~~l~~~~~y~g~~~~~-~~~~~ 158 (767)
....|.|.++. .++.|. .+++ .+.|+|.+++. .|+|+
T Consensus 144 ------------------------------------~~~~l~i~l~~---~L~~g~-~~~l--~i~y~g~~~~~~~G~y~ 181 (967)
T 3se6_A 144 ------------------------------------AHEQIALLVPE---KLTPHL-KYYV--AMDFQAKLGDGFEGFYK 181 (967)
T ss_dssp ------------------------------------GGTEEEEECSS---CCCTTC-CEEE--EEEEEEECBSSSSEEEE
T ss_pred ------------------------------------CCCEEEEEcCC---ccCCCC-eEEE--EEEEEEecCCCccceee
Confidence 01146776543 343332 2444 47899988765 49999
Q ss_pred EEEEEecCCcceEEEcceEeccCccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEeCcccceeeccCCCCceEEEEe
Q 004221 159 IDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYR 238 (767)
Q Consensus 159 ~~y~~~~~~~G~~f~~~~~~T~~ep~~Ar~~FPC~D~p~~katf~l~i~~p~~~~aisng~l~~~~~~~~~~~~~~~~f~ 238 (767)
+.|... +|. .+++++|||||.+||+||||||+|++||+|+|+|++|++|+|+|||++.++.. .++++++++|.
T Consensus 182 s~y~~~---~g~--~~~~~~Tq~ep~~AR~~FPC~DeP~~KAtf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~F~ 254 (967)
T 3se6_A 182 STYRTL---GGE--TRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIE--LEGGLLEDHFE 254 (967)
T ss_dssp EEEECT---TSC--EEEEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEECTTCEEEESSCEEEEEE--CTTSCEEEEEC
T ss_pred eeeEcC---CCc--eEEEEEEecccCCCCeEEEecCCcCceeEEEEEEEECCCcEEEeCCCccccee--cCCCeEEEEEe
Confidence 998643 232 25678999999999999999999999999999999999999999999976543 35688999999
Q ss_pred cCCCccceeeEEEEeeceEeecC--CCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECCCCcc
Q 004221 239 LDVPVSAKWITLAVAPFEVLPDH--HQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAV 316 (767)
Q Consensus 239 ~t~p~s~yliafavg~f~~~~~~--~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~~~~~ 316 (767)
.++|||+|++||+||+|+.++.. .+.++++|++|+..++++++++.++++++|||++||+||||+|+|+|++|++..+
T Consensus 255 ~t~pmstYLva~~vg~f~~~~~~~~~gv~v~v~~~p~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vPdf~~G 334 (967)
T 3se6_A 255 TTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPG 334 (967)
T ss_dssp CCCSBCGGGCCEEEECCEEEEEECTTCCEEEEEECGGGGGGGHHHHHHHHHHHHHHHHHHTCCCCSSEEEEEEESSCSSS
T ss_pred cCCCccceeEEEEEeceEEEEeecCCCcEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccEEEecCCCCc
Confidence 99999999999999999988753 4678999999999999999999999999999999999999999999999998889
Q ss_pred cccccccchhhh-ccccccCccccchhh--hHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchH
Q 004221 317 SSSTFGAAMGIF-SSQILYDEKVIDQAI--DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNE 393 (767)
Q Consensus 317 ~~~~~gagl~~~-~~~lL~~~~~~~~~~--~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~ 393 (767)
+|||| ||++| ++.+|++++..+... ....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|...
T Consensus 335 aMEn~--Glity~e~~ll~d~~~s~~~~k~~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~p~~~ 412 (967)
T 3se6_A 335 AMENW--GLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQ 412 (967)
T ss_dssp EECCT--TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred ccccC--CccccchhheecCcccCCHHhhHhHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHHhcccch
Confidence 99999 68999 566889887544332 23458999999999999999999999999999999999999999888764
Q ss_pred HHHHHHHhcccceecccCCCcccCCCCccccC----C-CCcccccccceeeehHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 004221 394 ARYRRYKANCAVCKADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISR 468 (767)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~-~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~e~F~~~L~~yl~~ 468 (767)
..-........ ++..++..+.+|+ . +.++..+|+.++|.||++|||||+..||++.|+++|+.|+++
T Consensus 413 ~~~~~~~~~~~--------al~~D~~~~~~Pi~~~v~~~~~i~~~Fd~i~Y~KGa~vL~mL~~~lG~e~F~~gLr~Yl~~ 484 (967)
T 3se6_A 413 FDDYFLNVCFE--------VITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKK 484 (967)
T ss_dssp HHHHHHHHHHH--------HHTTTTSTTCCCSSCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------HHHhhcccCCCCceeecCCHHHHHHhcchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 31000111111 1111111122222 1 234556899999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHhcC------------------------CCcccHHhHHHhhccCCCceEEEEEEEEecCC
Q 004221 469 AQGASPVRTLSTKEFRHFANKVGN------------------------LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRK 524 (767)
Q Consensus 469 ~~~~~~~~~~st~~f~~~~~~~~~------------------------~~~~dl~~f~~~W~~~~G~P~l~v~~~~~~~~ 524 (767)
|++++ ++++||++.++++.. .++.||++||++|+.|+|||+|+|+++ +
T Consensus 485 ~~~~n----at~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~~W~~q~G~Pvl~V~~~----~ 556 (967)
T 3se6_A 485 FSYRN----AKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQD----G 556 (967)
T ss_dssp HTTEE----ECHHHHHHHHHCC-------------------------CCCCCCHHHHHHHHHHSCSCEEEEEEEE----T
T ss_pred hccCC----CCHHHHHHHHHHHhhhccccccccccccccccccccccccCCcCHHHHHHHHhcCCCCcEEEEEec----C
Confidence 99996 689999998887521 146799999999999999999999873 4
Q ss_pred cEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCCcceeeEEEEeccCCcccccccccCCCcceeEeeeecccchhhhh
Q 004221 525 NIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRA 604 (767)
Q Consensus 525 ~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plti~~~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~ 604 (767)
+.+.|+|+|+....... .++......+..|++|+++.... +++....++ ..+. . .
T Consensus 557 ~~~~l~Q~rf~~~~~~~-------~~~~~~~~~~~~W~IPl~~~~~~-~~~~~~~~l--~~~~-~--~------------ 611 (967)
T 3se6_A 557 CSLRLQQERFLQGVFQE-------DPEWRALQERYLWHIPLTYSTSS-SNVIHRHIL--KSKT-D--T------------ 611 (967)
T ss_dssp TEEEEEEEECCCC------------------CCSCCCCCCEEEEESS-CCCCEEECC--CSSE-E--E------------
T ss_pred CEEEEEeeeecCCCCCC-------ccccccccCCceEEEEEEEEeCC-CCccceEEe--cCCc-e--E------------
Confidence 57899999876421100 00000001235899999997643 222111010 0000 0 0
Q ss_pred cCCCCCCCCCCCCCCCCccccccccccCCCCeeEEEecCCCceeEEEeecCch-HHHHHHHcccC------ChHHHHHHH
Q 004221 605 LKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPV-QMWINQLEKDG------DVVAQAQAI 677 (767)
Q Consensus 605 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir~d~~~~~~~~v~~~~~~-~~~~~qL~~d~------dv~aq~~a~ 677 (767)
+ ....+.+||.+|+++.++|||+|+... ..++.+|+.++ |...-++++
T Consensus 612 ------------------i-------~~~~~~~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~ 666 (967)
T 3se6_A 612 ------------------L-------DLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDV 666 (967)
T ss_dssp ------------------E-------ECSSCCSCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred ------------------E-------eccCCCceEEEeCCccEEEEEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 0 011345799999999999999655432 33467886544 333445888
Q ss_pred HHHHcCCCCchhHhhHHHHhhccCcchhHHHHHHHHHHHhhc
Q 004221 678 AALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (767)
Q Consensus 678 ~~l~~~~~~s~~~~~~L~~~l~~~~~f~~vr~~Aa~~L~~~~ 719 (767)
.+|++.+..+...+..|.+.|.+|. -|-++..|...|..+.
T Consensus 667 ~~la~~g~~~~~~~l~l~~~l~~E~-~~~~w~~a~~~l~~l~ 707 (967)
T 3se6_A 667 FQLVGAGRLTLDKALDMTYYLQHET-SSPALLEGLSYLESFY 707 (967)
T ss_dssp HHHHHTTSSCHHHHHHHTTGGGTCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHH
Confidence 9999998888888888899999884 6788999998887654
|
| >4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A* | Back alignment and structure |
|---|
| >3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* | Back alignment and structure |
|---|
| >3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* | Back alignment and structure |
|---|
| >1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* | Back alignment and structure |
|---|
| >2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ... | Back alignment and structure |
|---|
| >3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
| >2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* | Back alignment and structure |
|---|
| >4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} | Back alignment and structure |
|---|
| >3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 767 | ||||
| d3b7sa2 | 208 | b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-term | 3e-14 | |
| d3b7sa3 | 252 | d.92.1.13 (A:209-460) Leukotriene A4 hydrolase cat | 1e-12 |
| >d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 208 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Leukotriene A4 hydrolase N-terminal domain superfamily: Leukotriene A4 hydrolase N-terminal domain family: Leukotriene A4 hydrolase N-terminal domain domain: Leukotriene A4 hydrolase N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (171), Expect = 3e-14
Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 65/247 (26%)
Query: 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTEF 74
S +H L S+D + + G L + ++ + L ++L IE V+++G+ ++
Sbjct: 14 SVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKY 73
Query: 75 EYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQ 134
Q+ + S+ +
Sbjct: 74 ALGE--RQSYKGSPMEISLPIAL------------------------------------- 94
Query: 135 IEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHF---------DGNALHTDNQIRR 185
K ++ I + + + + L + Q
Sbjct: 95 ---------------SKNQEIVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIH 139
Query: 186 ARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245
R PC D + + Y E +V + L+A+ + + +DP RK Y + VP+
Sbjct: 140 CRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPC 199
Query: 246 KWITLAV 252
I L V
Sbjct: 200 YLIALVV 206
|
| >d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 252 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 767 | |||
| d3b7sa3 | 252 | Leukotriene A4 hydrolase catalytic domain {Human ( | 100.0 | |
| d3b7sa2 | 208 | Leukotriene A4 hydrolase N-terminal domain {Human | 100.0 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 84.9 | |
| d1u4ga_ | 298 | Elastase {Pseudomonas aeruginosa [TaxId: 287]} | 83.98 |
| >d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-44 Score=367.92 Aligned_cols=237 Identities=14% Similarity=0.214 Sum_probs=187.1
Q ss_pred CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCccEEEECC-CCcccccccccchhhhccccccCccccch
Q 004221 263 QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAP-EMAVSSSTFGAAMGIFSSQILYDEKVIDQ 341 (767)
Q Consensus 263 ~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~v~vp~-~~~~~~~~~gagl~~~~~~lL~~~~~~~~ 341 (767)
++.|++|++|+..+.++++++.++++|++||++|| ||||+|+++|++|+ +..++||++ |++++++.++..+..
T Consensus 7 g~~vrv~~~p~~~~~~~~~l~~~~~~l~~~e~~~g-~YP~~k~d~v~~~~~~~~ggmE~~--~l~~~~~~~~~~~~~--- 80 (252)
T d3b7sa3 7 GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP--CLTFVTPTLLAGDKS--- 80 (252)
T ss_dssp ETTEEEEECGGGHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCT--TEEEECGGGCCSSST---
T ss_pred CCceEEEEccchHHHHHHHHHHHHHHHHHHHHhCC-CCCchhcCEEEeCCCccccccccc--eeeeecchhccccch---
Confidence 57899999999999999999999999999999998 99999999999964 445789988 677777666544332
Q ss_pred hhhHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhhCchHHHHHHHHhcccceeccc--CCCcccCCC
Q 004221 342 AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADD--SGATALSSS 419 (767)
Q Consensus 342 ~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~ 419 (767)
...+||||+|||||||+||++||+|+||+||||+|++.+++++.+|.+..++.............+ ....++...
T Consensus 81 ---~~~~iaHE~aHqWfG~~Vt~~~w~~~WL~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (252)
T d3b7sa3 81 ---LSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKL 157 (252)
T ss_dssp ---TTHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCGGGSS
T ss_pred ---HHHHHHHHHHHHHHhhhceeccccchHhhccHHHHHHHHhhccccchhhhhhhhhhhhhhHHHHHhhhhccCCccee
Confidence 234799999999999999999999999999999999999999999988664433222211111111 111121111
Q ss_pred CccccCCCCcccccccceeeehHHHHHHHHHHhhC-HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCcccH
Q 004221 420 ASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFL 498 (767)
Q Consensus 420 ~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG-~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~~~~~~~~~~dl 498 (767)
.......+....|+.++|.||++||+||++.|| ++.|+++|+.|++++++++ ++++||.+.++++++ .++
T Consensus 158 --~~~~~~~~~~~~f~~~~Y~Kga~vl~mL~~~iG~~~~f~~~lr~yl~~~~~~~----~~~~df~~~l~~~~~---~~~ 228 (252)
T d3b7sa3 158 --VVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDFLYSYFK---DKV 228 (252)
T ss_dssp --SCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHHTG---GGH
T ss_pred --eccccccchhhcccceeecchhHHHHHHHHHhccHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHhc---ccc
Confidence 001112233456888999999999999999999 5789999999999999985 799999999999874 567
Q ss_pred HhH----HHhhccCCCceEEEEE
Q 004221 499 KEF----FPRWVGTCGCPVLRMG 517 (767)
Q Consensus 499 ~~f----~~~W~~~~G~P~l~v~ 517 (767)
+.+ |++|++++|+|+|+|+
T Consensus 229 ~~~~~~~f~~W~~~~G~P~l~v~ 251 (252)
T d3b7sa3 229 DVLNQVDWNAWLYSPGLPPIKPN 251 (252)
T ss_dssp HHHTTSCHHHHHHCCSSCSSCCC
T ss_pred chhhHhHHHHHhcCCCCCeeecc
Confidence 777 9999999999999885
|
| >d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1u4ga_ d.92.1.2 (A:) Elastase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|