Citrus Sinensis ID: 004255

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-----
Protein Sequence
MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR
Secondary Structure (PSIPRED)
cccccccccccccccHHHcccEEEEEccccccHHHHHHHcccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEccEEEEEEccccccEEEEEEccccEEEEEEEcccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEEccccEEEEEEcccccccccccccccccccccccccccccEEEEEEEEEEEEccccccHHHHHccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccEEEEEEEccccccccccccEEEEEEEccEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccEEEEEEEcccEEEEEEccccccEEEEEcccccEEEEEEccccccccccccHHccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEccccEEEEEccccEEEEEEccEEEEEEHHHHHccEEEEcccccccccccccccccccccEEEcHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEccccccccccccccccccccEEEEEEEcccccEEEEEEEEccccEEEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccEEHHHcccccccccccccccccccEEEEEcccccEEEEEEcccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccEccccEEEEEEEcccccccccccEEEEEEEcccEEEEEcHccHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mkkgkgrnngllpnsLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVtwagfdrleygpsVFKQVLLLGYQNGFQVLDVedasnfnelvskrdgpvsflqmqpfpvkddgcegfrkLHPFLLVVagedtntlapgqnrshlggvrdgmmdsqsgncvnsptavrFYSFQSHCYEHVLRFRSsvcmvrcsprIVAVGLATQIYCFdaltlenkfsvltypvpqlagqgavginvgygpmavgprwLAYASNTlllsnsgrlspqnltpsgvspstspggsSLVARYAMEHSKQFAAGLSKTLSKYCQellpdgssspvspnsvwkvgrhagadmdnagiVVVKDFVTRAIISQFkahtspisalcfdpsgtlLVTASVYgnninifrimpscmrsgsgnhkydwnsshVHLYKLHRGITSATIQDICFSHYSQWIAIVSskgtchvfvlspfggdsgfqtlssqggdpylfpvlslpwwctssgiseqqcvlppppvtlsVVSRIKyssfgwlntvsnasassmgkvfvpsgAVAAVFHNSIAHSSQHVNSRTNSLEHLlvytpsgyvvqhellpsigmgpsddgsRIRAASLMCLqeddlqvrvepvqwwdvcrrsdwpereefiseatcdghgaveifqnksdcednygidfldindcivekstfkncsvksyershwYLSNAEvqmssgrlpiwqsskisffkmdspranthasgefeieKVSVHEVEIKrkellpvfdhfqcikpswnnr
Flexible Loop (DISEMBL)
mkkgkgrnngllpnSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGedtntlapgqnRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNltpsgvspstspGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLpdgssspvspnSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQeddlqvrvepvqwwdVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKrkellpvfdhfqcikpswnnr
Low Complexity Region (SEG)
MKKGKGRNNGLLPNSLKIISSCLKtvstnastvastvrsagasvaasisnasEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNltpsgvspstspggsslvARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCvlppppvtlsvvsRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR
Disordered region (IsUnstruct)
***************LKIISSCLKTVS***************************LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDT**************************CVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLL**********************************************L*KYC****************VWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM*******RIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFK*************FEIEKVSVHEVEIKRKELLPVFDHFQCIKP*****
Disordered Region (DISOPRED)
***********************************************************TWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPF**********RKLHPFLLVVAGEDT*****************************SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQL************GPMAVGPRWLAYASNTLL***********LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG*******************DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM************SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP*******************************SGISEQQCVLP***************************************AVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELL******************************VEPVQWWDVCRRS************TCDGHGAVEIFQNKSDCE********************************WYLSNAEVQMSSGRLPIWQSSKISFFKMD************EIEKVSVHEVEIKRKELLPVFDHF**********
Disordered Region (DISEMBL)
MKKGKGRNNGLLPNSLKIISSCLKTV*******************ASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN*************GSSLVARYAMEHSKQFAAGLSKTLSKYCQELL*********PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR
Disordered Region (DISPRO)
**********LLPNSLKIISSCLKTVSTNA**********************EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSG******LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL************************MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR***********SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG**********PYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASA***GKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSI******************LQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVE**QNKSDC*****************************ERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCI*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	765	2.2.26 [Sep-21-2011]
Q8CCN5	928	Breast carcinoma-amplifie	yes	no	0.473	0.390	0.272	6e-36
Q9H6U6	928	Breast carcinoma-amplifie	yes	no	0.444	0.366	0.271	6e-35
Q8SY41	1122	Breast carcinoma-amplifie	yes	no	0.352	0.240	0.307	3e-28
Q4P4N1	453	Autophagy-related protein	N/A	no	0.192	0.324	0.315	3e-10
Q75F47	537	Autophagy-related protein	yes	no	0.329	0.469	0.236	1e-06
Q7SG97	310	SVP1-like protein 2 OS=Ne	N/A	no	0.129	0.319	0.336	1e-06
P43601	500	Autophagy-related protein	yes	no	0.320	0.49	0.231	1e-06
A7A258	500	Autophagy-related protein	N/A	no	0.320	0.49	0.231	1e-06
Q6FM63	505	Autophagy-related protein	yes	no	0.329	0.499	0.221	2e-06
Q6FXC1	445	SVP1-like protein 2 OS=Ca	no	no	0.116	0.2	0.327	3e-06

>sp|Q8CCN5|BCAS3_MOUSE Breast carcinoma-amplified sequence 3 homolog OS=Mus musculus GN=Bcas3 PE=1 SV=2

 Score =  153 bits (386), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 200/433 (46%), Gaps = 71/433 (16%)

Query: 54  DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQM 113
           DL D      F  L    +    ++++GY +G QV  +  +    EL S R GPV   ++
Sbjct: 69  DLNDTSRNLEFHELHSTGNEPPLLVMIGYSDGMQVWGIPISGEAQELFSVRHGPVRAARI 128

Query: 114 QPFP-VKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSP 172
            P P +    C+ F +  P L V     ++   P                     CV+  
Sbjct: 129 LPAPQLGAQKCDNFAEKRPLLGVCKSIGSSGTTPPY------------------CCVD-- 168

Query: 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YP 231
                YS ++      ++F++ +  + C+ RI+ V L  +I  FD+ T   KF V + YP
Sbjct: 169 ----LYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYP 224

Query: 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSP-----QNLTPSGVSPS- 285
            P        G N+   P+A+G RWLAYA N L+  +  R        Q+ T + +S + 
Sbjct: 225 CP--------GPNM--NPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVLSAAK 274

Query: 286 TSPGGSSLVARYAMEHSKQFAAGLSK-TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD 344
           T   G ++V +   + +    +G+++  ++ +C     +   SP+ P  +  +      D
Sbjct: 275 TLKSGLTMVGKVVTQLTGTLPSGVTEDDVALHC-----NSRRSPLVPGIITVI------D 323

Query: 345 MDNAG---IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401
            +  G   ++V +D  +  I++ F AH  P+  + F+ SG LLVT    G++ ++F+I+ 
Sbjct: 324 TETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL- 382

Query: 402 SCMRSGSGNHKYDWNSSHV---HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
                      + W+SS     HLY LHRG T A +QDICFSH  +W+ + + +GT HVF
Sbjct: 383 ----------THPWSSSQCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVF 432

Query: 459 VLSPFGGDSGFQT 471
            ++P+GG    +T
Sbjct: 433 PINPYGGQPCVRT 445

Mus musculus (taxid: 10090)

>sp|Q9H6U6|BCAS3_HUMAN Breast carcinoma-amplified sequence 3 OS=Homo sapiens GN=BCAS3 PE=1 SV=3

 Score =  149 bits (377), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 191/409 (46%), Gaps = 69/409 (16%)

Query: 77  VLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFP-VKDDGCEGFRKLHPFLLV 135
           ++++GY +G QV  +  +    EL S R GP+   ++ P P      C+ F +  P L V
Sbjct: 92  LIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGV 151

Query: 136 VAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV 195
                ++  +P                     CV+       YS ++      ++F++ +
Sbjct: 152 CKSIGSSGTSPPYC------------------CVD------LYSLRTGEMVKSIQFKTPI 187

Query: 196 CMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP 254
             + C+ RI+ V L  +I  FD+ T   KF V + YP P        G N+   P+A+G 
Sbjct: 188 YDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCP--------GPNMN--PIALGS 237

Query: 255 RWLAYASNTLLLSNSGRLSP-----QNLTPSGVSPS-TSPGGSSLVARYAMEHSKQFAAG 308
           RWLAYA N L+  +  R        Q+ T + +S + T   G ++V +   + +    +G
Sbjct: 238 RWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLTGTLPSG 297

Query: 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG---IVVVKDFVTRAIISQF 365
           +++        +  +   SP+ P  +  +      D +  G   ++V +D  +  I++ F
Sbjct: 298 VTEDDVA----IHSNSRRSPLVPGIITVI------DTETVGEGQVLVSEDSDSDGIVAHF 347

Query: 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---HL 422
            AH  P+  + F+ SG LLVT    G++ ++F+I+            + W+SS     HL
Sbjct: 348 PAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL-----------THPWSSSQCAVHHL 396

Query: 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
           Y LHRG T A +QDICFSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct: 397 YTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445

Homo sapiens (taxid: 9606)

>sp|Q8SY41|BCAS3_DROME Breast carcinoma-amplified sequence 3 homolog OS=Drosophila melanogaster GN=CG43154 PE=1 SV=1

 Score =  127 bits (320), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 156/328 (47%), Gaps = 58/328 (17%)

Query: 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YP 231
           +AV F S ++      ++F+++V  ++ +   V +    +I  FDA TLE++ ++ T YP
Sbjct: 229 SAVNFMSLKTGVQVKTIKFKNAVLDIQANRSAVVITFHERIAVFDARTLEDRLTITTCYP 288

Query: 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSN-SGRLSPQNLTPSGVSPSTSPGG 290
            P        GIN    P+A+GPRWLAYA + LL S  SG        PS  +  T    
Sbjct: 289 SP--------GINPN--PIALGPRWLAYAEHKLLHSKRSGGGCDGEGVPSYTA--TVLNA 336

Query: 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 350
           +  +++   E  +Q AAGL+ T +                  S        G D   +G+
Sbjct: 337 AKSLSKGLREFGEQVAAGLTGTTAGSGASS-----------KSSSFDSASGGPDAKQSGV 385

Query: 351 VV-------VKDFVTRA----------------IISQFKAHTSPISALCFDPSGTLLVTA 387
           V        VKD+   +                I++ F AH+  + A+ FD SG LL+TA
Sbjct: 386 VTIIDVKHPVKDYSPTSGTPLSSTAGSQGGGDPIVAHFVAHSEALVAMEFDSSGMLLLTA 445

Query: 388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-LYKLHRGITSATIQDICFSHYSQWI 446
              G++ ++FR+ P         H    + + VH LY LHRG TSA +Q I FS  S+W 
Sbjct: 446 DRRGHDFHVFRVQP---------HPVGPSLAAVHHLYVLHRGDTSAKVQHIAFSLDSRWA 496

Query: 447 AIVSSKGTCHVFVLSPFGGDSGFQTLSS 474
           A+ + +GT HVF ++P+GG  G +T +S
Sbjct: 497 AVSTLRGTTHVFPITPYGGAMGVRTHTS 524

Drosophila melanogaster (taxid: 7227)

>sp|Q4P4N1|ATG18_USTMA Autophagy-related protein 18 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ATG18 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 18/165 (10%)

Query: 314 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPIS 373
           S+ C    P   +SP SP S       A A+   AG V++ D ++ ++ +  +AH +PIS
Sbjct: 152 SENCFLAYPSPVASPTSPFSNSGASSSAEANT-TAGDVLIFDLLSLSVTNVIQAHKTPIS 210

Query: 374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433
           AL  + +GTLL TAS  G  I +F I P+  +                L++  RG  +A 
Sbjct: 211 ALALNATGTLLATASDKGTVIRVFSI-PAAQK----------------LHQFRRGSYAAR 253

Query: 434 IQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478
           I  + F+  S  +A+ S   T H+F LS   G       SS GG+
Sbjct: 254 IYSLNFNAVSTLLAVSSDTETVHIFKLSSGAGAGAKGRSSSNGGE 298

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q75F47|ATG18_ASHGO Autophagy-related protein 18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATG18 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 118/300 (39%), Gaps = 48/300 (16%)

Query: 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 230
           SP  +R  + + H     + F +++  V+ +   + V L  QIY +D  ++   +++ T 
Sbjct: 72  SPRRLRILNTKRHSVICEVTFPTTILAVKMNRSRLVVLLQEQIYIYDINSMRLLYTIETS 131

Query: 231 PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSP-- 284
             P+             G +++ P     +LAY S   ++ NSG  S  N    G+S   
Sbjct: 132 SNPR-------------GLISMSPSLENNYLAYPSPPKVI-NSGIKSNANTNNIGISARS 177

Query: 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD 344
           S + GGS  + +     +    AG      K   E       + +SP      G    A 
Sbjct: 178 SIAEGGSEYLDKGTEPLTDSSKAGADLNSVKASTE-------TTISPGKEHSAGSGLNAT 230

Query: 345 MDNA----GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400
             +     G V+  +  T       +AH   I+AL     GTLL TAS  G  I +F + 
Sbjct: 231 SSSGTVKNGDVIFFNLQTLQPTMVIEAHKGEIAALALSKDGTLLATASEKGTIIRVFSV- 289

Query: 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460
            +C +                +Y+  RG     I  + FS  ++++A  SS  T H+F L
Sbjct: 290 ETCTK----------------VYQFRRGTYPTRIYSLNFSDDNEFLAASSSNKTVHIFKL 333

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q7SG97|HSV2_NEUCR SVP1-like protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=hsv-2 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 20/119 (16%)

Query: 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421
           +S   AHTS + A+     G LL TAS  G  I ++    +C R                
Sbjct: 54  VSIITAHTSALRAMALSQDGELLATASEMGTIIRVY-ATSNCAR---------------- 96

Query: 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPY 480
           LY+L RGI  A I  I FS   +++A  S K T HVF ++  GG    + ++S GG  Y
Sbjct: 97  LYELRRGIDKAIIFSIGFSPSGKYLACTSDKSTLHVFDVTRPGGT---RPITSNGGTAY 152

Involved in mitochondrial or peroxisomal functions and amino acid signaling pathways.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P43601|ATG18_YEAST Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG18 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 118/294 (40%), Gaps = 49/294 (16%)

Query: 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 230
           SP  +R  + + H     + F +S+  V+ +   + V L  QIY +D  T+    ++ T 
Sbjct: 71  SPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETN 130

Query: 231 PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286
           P P+             G MA+ P     +L Y S   ++++  +    + T + ++ S 
Sbjct: 131 PNPR-------------GLMAMSPSVANSYLVYPSPPKVINSEIK---AHATTNNITLSV 174

Query: 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346
                +   R   +      + L +  S + +    D +SS    +S+ K G        
Sbjct: 175 GGNTETSFKRDQQDAGHSDISDLDQ-YSSFTKRDDADPTSSNGGNSSIIKNGD------- 226

Query: 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406
               V+V +  T       +AH   I+A+     GTL+ TAS  G  I +F I       
Sbjct: 227 ----VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDI------- 275

Query: 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460
            +G+           +Y+  RG  +  I  I FS  SQ++A+  S  T H+F L
Sbjct: 276 ETGD----------KIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFKL 319

The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). May negatively regulate FAB1 activity by sequestering or masking VAC7 from FAB1. Necessary for proper vacuole morphology. Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A7A258|ATG18_YEAS7 Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG18 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 118/294 (40%), Gaps = 49/294 (16%)

Query: 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 230
           SP  +R  + + H     + F +S+  V+ +   + V L  QIY +D  T+    ++ T 
Sbjct: 71  SPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETN 130

Query: 231 PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286
           P P+             G MA+ P     +L Y S   ++++  +    + T + ++ S 
Sbjct: 131 PNPR-------------GLMAMSPSVANSYLVYPSPPKVINSEIK---AHATTNNITLSV 174

Query: 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346
                +   R   +      + L +  S + +    D +SS    +S+ K G        
Sbjct: 175 GGNTETSFKRDQQDAGHSDISDLDQ-YSSFTKRDDADPTSSNGGNSSIIKNGD------- 226

Query: 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406
               V+V +  T       +AH   I+A+     GTL+ TAS  G  I +F I       
Sbjct: 227 ----VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDI------- 275

Query: 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460
            +G+           +Y+  RG  +  I  I FS  SQ++A+  S  T H+F L
Sbjct: 276 ETGD----------KIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFKL 319

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

>sp|Q6FM63|ATG18_CANGA Autophagy-related protein 18 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ATG18 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 115/298 (38%), Gaps = 46/298 (15%)

Query: 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY 230
           SP  +R  + + H     + F + +  V+ +   + V L  QIY +D   +    ++   
Sbjct: 71  SPRRLRIINTKKHSIICEVTFPTKILSVKMNRSRIVVVLKEQIYIYDINNMRLLHTIEIA 130

Query: 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290
           P P+  G  A+  N            LAY S                 P  +S   +P  
Sbjct: 131 PNPE--GLVALSCNTD-------TNLLAYPS----------------PPKVISSDINPNV 165

Query: 291 SSLVARYAMEHSKQFAAGLSKT--LSKYCQELLPDGSSSPVSPNSVWKVGRHAG-ADMD- 346
           ++     A   S++  A        +K+   L    +       + ++V ++   A+ D 
Sbjct: 166 NTNTINIARSKSEELIANSKDNNLQNKFGTTLEGQQNIDEDKAANGYQVDQNTDTAENDI 225

Query: 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406
           N+G V++ D  T   +   +AH   I+AL F   G+L+ TAS  G  I +F         
Sbjct: 226 NSGDVIIYDMSTLQPLMVIEAHKGEIAALNFSFDGSLIATASEKGTIIRVFS-------- 277

Query: 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464
                     SS   LY+  RG     I  + FS  ++++++  S  T H+F L+  G
Sbjct: 278 ---------TSSGAKLYQFRRGTYPTKIYSLSFSQDNRFLSVTCSSKTVHIFKLTKTG 326

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q6FXC1|HSV2_CANGA SVP1-like protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=HSV2 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 24/113 (21%)

Query: 354 KDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413
           + F+   II   KAH +PI  +  +  GT++ TAS  G  I IF                
Sbjct: 208 ESFLPTTII---KAHKAPIRNVRINNQGTMVATASRKGTLIRIF---------------- 248

Query: 414 DWNSSH--VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464
              S+H  + L +  RG+  A I D+CFS     +A+VS K T HVF ++P  
Sbjct: 249 ---STHNGILLKEFRRGLDRAEIYDMCFSPLGTRLAVVSDKQTLHVFQIAPMA 298

Involved in mitochondrial or peroxisomal functions and amino acid signaling pathways.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	765
255567594	1016	breast carcinoma amplified sequence, put	0.993	0.748	0.740	0.0
296086668	951	unnamed protein product [Vitis vinifera]	0.975	0.784	0.730	0.0
225436857	988	PREDICTED: uncharacterized protein LOC10	0.975	0.755	0.730	0.0
356504886	979	PREDICTED: uncharacterized protein LOC10	0.989	0.773	0.688	0.0
147779793	1237	hypothetical protein VITISV_008540 [Viti	0.904	0.559	0.715	0.0
356570542	950	PREDICTED: uncharacterized protein LOC10	0.989	0.796	0.670	0.0
240253994	959	autophagy 18G-like protein [Arabidopsis	0.993	0.792	0.625	0.0
297843152	958	hypothetical protein ARALYDRAFT_333664 [	0.993	0.793	0.622	0.0
147845501	754	hypothetical protein VITISV_035392 [Viti	0.952	0.966	0.657	0.0
357133727	1015	PREDICTED: uncharacterized protein LOC10	0.966	0.728	0.609	0.0

>gi|255567594|ref|XP_002524776.1| breast carcinoma amplified sequence, putative [Ricinus communis] gi|223535960|gb|EEF37619.1| breast carcinoma amplified sequence, putative [Ricinus communis]

 Score = 1116 bits (2886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/775 (74%), Positives = 649/775 (83%), Gaps = 15/775 (1%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGK +NNG+LPNSL+IISSCLKTVSTNA+TVASTVRSA  +  A+  ++SED KDQV+
Sbjct: 1   MKKGKSKNNGILPNSLRIISSCLKTVSTNATTVASTVRSA-GASVAASISSSEDHKDQVS 59

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFDRLE  PSV K+VLLLGY NGFQVLDVEDASN+ ELVSKRDGPVSFLQMQPFP K 
Sbjct: 60  WAGFDRLELSPSVIKRVLLLGYHNGFQVLDVEDASNYRELVSKRDGPVSFLQMQPFPSKS 119

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
           DG E FR  HP LLVVAG+DTN++  GQN  HLGGV R+G M+SQ  NC++SPT+VRFYS
Sbjct: 120 DGHERFRSSHPLLLVVAGDDTNSINVGQNPGHLGGVGREGNMESQPRNCISSPTSVRFYS 179

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +SHCY HVLRFRS+V MVRCSPRI+AVGLATQIYC DALTLE+KFSVLTYPVPQLAGQG
Sbjct: 180 LRSHCYVHVLRFRSAVRMVRCSPRIIAVGLATQIYCIDALTLESKFSVLTYPVPQLAGQG 239

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGGSSLVARYA 298
             GINVGYGPMAVGPRWLAYASN  L+SN+ RLS Q+LTPS GVSPSTSPGG+SLVARYA
Sbjct: 240 --GINVGYGPMAVGPRWLAYASNNPLVSNTTRLSAQSLTPSPGVSPSTSPGGTSLVARYA 297

Query: 299 MEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
           ME SKQ AAG+        KT SKYCQELLPDGS+SPVSP+S WKVGR AG+DMD AG+V
Sbjct: 298 MESSKQLAAGIINLGDMGYKTFSKYCQELLPDGSNSPVSPSSGWKVGRLAGSDMDTAGMV 357

Query: 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
           VVKDFV+R +ISQFKAHTSPISALCFDPSGTLLVTAS+YGNNINIFRIMPSC R G G  
Sbjct: 358 VVKDFVSRVVISQFKAHTSPISALCFDPSGTLLVTASIYGNNINIFRIMPSCSRGGLGVQ 417

Query: 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
            YDW+SSHVHLYKLHRG+TSA IQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ+
Sbjct: 418 SYDWSSSHVHLYKLHRGMTSAMIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQS 477

Query: 472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNAS 531
           L+S G +P L+P+LSLPWW TSS +  QQ   PPPPV+LSVVSRIKYSSFGWLNTV NA+
Sbjct: 478 LNSMGVEPSLYPILSLPWWSTSSWMINQQPYPPPPPVSLSVVSRIKYSSFGWLNTVGNAT 537

Query: 532 ASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM 590
            S+   KVFVPSGAVAAVFHNSI  S+QHVNSR N LEHLLVYTPSG+VVQHELLPSIG+
Sbjct: 538 GSAXSRKVFVPSGAVAAVFHNSICQSAQHVNSRANPLEHLLVYTPSGHVVQHELLPSIGL 597

Query: 591 GPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEI 650
              + GS+I+ AS + +QEDD++V+VEPVQWWDVCRRSDW EREE +  +T +G  AVEI
Sbjct: 598 ELGESGSKIQPASFVHIQEDDMKVKVEPVQWWDVCRRSDWSEREESVIGST-NGQDAVEI 656

Query: 651 FQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQS 710
              K   E+N+ + FLD N  + EK +  + S+K +E+SHWYLSNAEVQ+SS RLPIWQ 
Sbjct: 657 ITRKPSGENNFEMVFLDTNGDVNEKKSSISYSMKPHEKSHWYLSNAEVQISSVRLPIWQK 716

Query: 711 SKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 765
           SKI F+ MDSPR N +  GEFEIEKV + EVE+KRKELLPVFDHF   K  WN+R
Sbjct: 717 SKICFYVMDSPRVN-YNDGEFEIEKVPIQEVELKRKELLPVFDHFHSFKSGWNDR 770

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086668|emb|CBI32303.3| unnamed protein product [Vitis vinifera]

 Score = 1100 bits (2845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/775 (73%), Positives = 639/775 (82%), Gaps = 29/775 (3%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGK RNNGLLPNSL+IISSCLKTVSTNAS+VASTVRSAG SVAASIS ASED KD+VT
Sbjct: 1   MKKGKARNNGLLPNSLRIISSCLKTVSTNASSVASTVRSAGVSVAASISAASEDHKDEVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFDRLE  PS FK+VLLLGYQNGFQVLDV+DASN +ELVSKRDGPV+FLQMQP P++ 
Sbjct: 61  WAGFDRLELSPSAFKRVLLLGYQNGFQVLDVDDASNVSELVSKRDGPVTFLQMQPIPLES 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
           DG EGFR  HP LLVVAG+++N L PGQN SH GG+ RDG  DSQSGNC++SPTAVRFYS
Sbjct: 121 DGHEGFRTSHPLLLVVAGDESNCLNPGQNHSHFGGLGRDGSSDSQSGNCISSPTAVRFYS 180

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +S+CY HVLRFRS+VCMVRCSPRIVAVGLATQIYCFDALTL NKFSVLTYPVPQL GQG
Sbjct: 181 LRSNCYVHVLRFRSAVCMVRCSPRIVAVGLATQIYCFDALTLGNKFSVLTYPVPQLGGQG 240

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGGSSLVARYA 298
            +G+NVGYGPM+VGPRWLAYASN  LLSN GRL+PQNLTPS GVSPSTSPG SSLVARYA
Sbjct: 241 TLGVNVGYGPMSVGPRWLAYASNNPLLSNRGRLNPQNLTPSPGVSPSTSPGSSSLVARYA 300

Query: 299 MEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
           ME SKQ AAG+        KTLSKY Q+LLPDGS+SP      WKVG  A A+ DNAG+V
Sbjct: 301 MESSKQLAAGIINLGDMGYKTLSKYYQDLLPDGSNSPG-----WKVGGLAAAETDNAGMV 355

Query: 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
           V+KDFV+RA+ISQF+AHTSPISALCFDPSGTLLVTASV+GNNINIFRIMPSC  SGSG  
Sbjct: 356 VIKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASVHGNNINIFRIMPSCTCSGSGCQ 415

Query: 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
            YDW+SSHVHLYKLHRG+T+A IQDI FSHYSQWI+IVSSKGTCHVFV+SPFGGD+GFQT
Sbjct: 416 SYDWSSSHVHLYKLHRGMTTAIIQDISFSHYSQWISIVSSKGTCHVFVISPFGGDAGFQT 475

Query: 472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCV-LPPPPVTLSVVSRIKYSSFGWLNTVSNA 530
            +S G +P LFPVLSLPWW +SS I  QQ    PPPP TLSVVSRIK  + GWLNTVS A
Sbjct: 476 SNSHGEEPSLFPVLSLPWWFSSSCIINQQSFPAPPPPHTLSVVSRIKNCNAGWLNTVSIA 535

Query: 531 SASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM 590
           +AS+ GKV VPSGAVAAVFHNS++ S QHV++R NSLEHLLVYTPSG+V+QHEL PS+G 
Sbjct: 536 AASATGKVLVPSGAVAAVFHNSLSQSPQHVHTRVNSLEHLLVYTPSGHVIQHELFPSMGA 595

Query: 591 GPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEI 650
             SD G+R  + S   +Q+++L+VRVEP+QWWDVCRRS+WPEREE +SE         +I
Sbjct: 596 ELSDGGTRTLSGSFRQIQDEELRVRVEPIQWWDVCRRSEWPEREECVSER----QKYAKI 651

Query: 651 FQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQS 710
             +KSD ED+Y  D L+I          K+ SVK  ERSHWYLSNAEVQ+SSGR+PIW  
Sbjct: 652 IVDKSDSEDSYRTDLLEI----------KSDSVKPLERSHWYLSNAEVQISSGRIPIWHK 701

Query: 711 SKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 765
           SKI F+ MD PR   H  GEFEIEK+ VHEVEI+RK+LLPVFDHF  IK  WN+R
Sbjct: 702 SKICFYMMDPPRVKNHVGGEFEIEKLPVHEVEIRRKDLLPVFDHFHSIKSGWNDR 756

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436857|ref|XP_002270856.1| PREDICTED: uncharacterized protein LOC100245938 [Vitis vinifera]

 Score = 1099 bits (2843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/775 (73%), Positives = 639/775 (82%), Gaps = 29/775 (3%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGK RNNGLLPNSL+IISSCLKTVSTNAS+VASTVRSAG SVAASIS ASED KD+VT
Sbjct: 1   MKKGKARNNGLLPNSLRIISSCLKTVSTNASSVASTVRSAGVSVAASISAASEDHKDEVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFDRLE  PS FK+VLLLGYQNGFQVLDV+DASN +ELVSKRDGPV+FLQMQP P++ 
Sbjct: 61  WAGFDRLELSPSAFKRVLLLGYQNGFQVLDVDDASNVSELVSKRDGPVTFLQMQPIPLES 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
           DG EGFR  HP LLVVAG+++N L PGQN SH GG+ RDG  DSQSGNC++SPTAVRFYS
Sbjct: 121 DGHEGFRTSHPLLLVVAGDESNCLNPGQNHSHFGGLGRDGSSDSQSGNCISSPTAVRFYS 180

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +S+CY HVLRFRS+VCMVRCSPRIVAVGLATQIYCFDALTL NKFSVLTYPVPQL GQG
Sbjct: 181 LRSNCYVHVLRFRSAVCMVRCSPRIVAVGLATQIYCFDALTLGNKFSVLTYPVPQLGGQG 240

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGGSSLVARYA 298
            +G+NVGYGPM+VGPRWLAYASN  LLSN GRL+PQNLTPS GVSPSTSPG SSLVARYA
Sbjct: 241 TLGVNVGYGPMSVGPRWLAYASNNPLLSNRGRLNPQNLTPSPGVSPSTSPGSSSLVARYA 300

Query: 299 MEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
           ME SKQ AAG+        KTLSKY Q+LLPDGS+SP      WKVG  A A+ DNAG+V
Sbjct: 301 MESSKQLAAGIINLGDMGYKTLSKYYQDLLPDGSNSPG-----WKVGGLAAAETDNAGMV 355

Query: 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
           V+KDFV+RA+ISQF+AHTSPISALCFDPSGTLLVTASV+GNNINIFRIMPSC  SGSG  
Sbjct: 356 VIKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASVHGNNINIFRIMPSCTCSGSGCQ 415

Query: 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
            YDW+SSHVHLYKLHRG+T+A IQDI FSHYSQWI+IVSSKGTCHVFV+SPFGGD+GFQT
Sbjct: 416 SYDWSSSHVHLYKLHRGMTTAIIQDISFSHYSQWISIVSSKGTCHVFVISPFGGDAGFQT 475

Query: 472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCV-LPPPPVTLSVVSRIKYSSFGWLNTVSNA 530
            +S G +P LFPVLSLPWW +SS I  QQ    PPPP TLSVVSRIK  + GWLNTVS A
Sbjct: 476 SNSHGEEPSLFPVLSLPWWFSSSCIINQQSFPAPPPPHTLSVVSRIKNCNAGWLNTVSIA 535

Query: 531 SASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM 590
           +AS+ GKV VPSGAVAAVFHNS++ S QHV++R NSLEHLLVYTPSG+V+QHEL PS+G 
Sbjct: 536 AASATGKVLVPSGAVAAVFHNSLSQSPQHVHTRVNSLEHLLVYTPSGHVIQHELFPSMGA 595

Query: 591 GPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEI 650
             SD G+R  + S   +Q+++L+VRVEP+QWWDVCRRS+WPEREE +SE         +I
Sbjct: 596 ELSDGGTRTLSGSFRQIQDEELRVRVEPIQWWDVCRRSEWPEREECVSER----QKYAKI 651

Query: 651 FQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQS 710
             +KSD ED+Y  D L+I          K+ SVK  ERSHWYLSNAEVQ+SSGR+PIW  
Sbjct: 652 IVDKSDSEDSYRTDLLEI----------KSDSVKPLERSHWYLSNAEVQISSGRIPIWHK 701

Query: 711 SKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 765
           SKI F+ MD PR   H  GEFEIEK+ VHEVEI+RK+LLPVFDHF  IK  WN+R
Sbjct: 702 SKICFYMMDPPRVKNHVGGEFEIEKLPVHEVEIRRKDLLPVFDHFHSIKSGWNDR 756

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504886|ref|XP_003521225.1| PREDICTED: uncharacterized protein LOC100785780 [Glycine max]

 Score = 1018 bits (2633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/767 (68%), Positives = 607/767 (79%), Gaps = 10/767 (1%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGKG+NNGLLPNSL+IIS CLKTVSTNA+TVASTVRSAGASVAASIS++SED KDQVT
Sbjct: 1   MKKGKGKNNGLLPNSLRIISLCLKTVSTNATTVASTVRSAGASVAASISSSSEDHKDQVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFD LE  P+  K+VLLLGY NGFQVLDVEDAS F ELVSKRDGPVSFLQMQPFPV  
Sbjct: 61  WAGFDTLELDPANLKRVLLLGYLNGFQVLDVEDASGFRELVSKRDGPVSFLQMQPFPVGC 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
           DG EGFRK HP LLVV+G+DT+     QN + L G+ RDG  ++Q GN VNS T VRFYS
Sbjct: 121 DGQEGFRKSHPLLLVVSGDDTSN--ANQNSTSLSGLGRDGNFETQPGNNVNSSTVVRFYS 178

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +SHCY HVLRFRS+VCM+RCS RIVAVGLATQIYCFDA+TLENKFSVLTYPV Q AGQG
Sbjct: 179 LKSHCYVHVLRFRSTVCMIRCSSRIVAVGLATQIYCFDAVTLENKFSVLTYPVSQFAGQG 238

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS-LVARYA 298
             G+NVGYGPMAVGPRWLAYASN  L SN G LSPQN + S     ++   S  LVARYA
Sbjct: 239 TTGVNVGYGPMAVGPRWLAYASNNPLPSNLGCLSPQNFSDSPGISPSTSPSSGSLVARYA 298

Query: 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358
           +E S+  AAG+ K    YCQELLPDGSSSP+  NS  KV R  G D DNAG+VV+KDFV+
Sbjct: 299 VESSRHLAAGIIK----YCQELLPDGSSSPIQSNSGVKVNRVTGIDADNAGMVVIKDFVS 354

Query: 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418
           R+IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS     SG    +WNSS
Sbjct: 355 RSIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSFTCKSSGIPSSNWNSS 414

Query: 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478
           HVHLYKLHRGIT A IQDICFS++SQWIAIVSSKGTCH+FVLSPFGGD+GF+ +SSQG +
Sbjct: 415 HVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFVLSPFGGDTGFRIISSQGEE 474

Query: 479 PYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKV 538
           P+L PV SLPWW T + IS QQ + PP PV LSV SRIKYSSFGWLNTV N+SA+  GKV
Sbjct: 475 PFLLPVFSLPWWYTPASISYQQSLPPPAPVVLSVASRIKYSSFGWLNTVHNSSANVTGKV 534

Query: 539 FVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSR 598
           FVPSGA+AA+FHNS++HS Q VNS+   LEH+LVYTPSG+VVQHELL S+G+G +D+G R
Sbjct: 535 FVPSGAIAAIFHNSLSHSQQLVNSKAKPLEHILVYTPSGHVVQHELLASVGLGTTDNGLR 594

Query: 599 IRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCE 658
            ++ SL+ +QED+ +V+VEP+QWWDVCRRS+WPER +     T D  G +E  Q K    
Sbjct: 595 NQSTSLLHMQEDEFRVKVEPIQWWDVCRRSEWPERGDTCCN-TFDRQGGIERVQEKISYS 653

Query: 659 DNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKM 718
           D +G++FL   D   EK   ++ +   ++R HWYLSNAEVQ + GRLPIWQ SKI  + M
Sbjct: 654 DVHGLNFLGTRDRAGEK-MVRSSNENMHDRFHWYLSNAEVQRNFGRLPIWQKSKICCYSM 712

Query: 719 DSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 765
               A+  A+GEFEIEKV V+EVEIKRKELLPVFDHF  I+ S N R
Sbjct: 713 SCAGASFSATGEFEIEKVPVNEVEIKRKELLPVFDHFHSIRSSGNER 759

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779793|emb|CAN64435.1| hypothetical protein VITISV_008540 [Vitis vinifera]

 Score = 1018 bits (2632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/721 (71%), Positives = 586/721 (81%), Gaps = 29/721 (4%)

Query: 55   LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQ 114
            L   VTWAGFDRLE  PS FK+VLLLGYQNGFQVLDV+DASN +ELVSKRDGPV+FLQMQ
Sbjct: 444  LHRSVTWAGFDRLELSPSAFKRVLLLGYQNGFQVLDVDDASNVSELVSKRDGPVTFLQMQ 503

Query: 115  PFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPT 173
            P P++ DG EGFR  HP LLVVAG+++N L PGQN SH GG+ RDG  DSQSGNC++SPT
Sbjct: 504  PIPLESDGHEGFRTSHPLLLVVAGDESNCLNPGQNHSHFGGLGRDGSSDSQSGNCISSPT 563

Query: 174  AVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVP 233
            AVRFYS +S+CY HVLRFRS+VCMVRCSPRIVAVGLATQIYCFDALTL NKFSVLTYPVP
Sbjct: 564  AVRFYSLRSNCYVHVLRFRSAVCMVRCSPRIVAVGLATQIYCFDALTLGNKFSVLTYPVP 623

Query: 234  QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGGSS 292
            QL GQG +G+NVGYGPM+VGPRWLAYASN  LLSN GRL+PQNLTPS GVSPSTSPG SS
Sbjct: 624  QLGGQGTLGVNVGYGPMSVGPRWLAYASNNPLLSNRGRLNPQNLTPSPGVSPSTSPGSSS 683

Query: 293  LVARYAMEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADM 345
            LVARYAME SKQ AAG+        KTLSKY Q+LLPDGS+SP      WKVG  A A+ 
Sbjct: 684  LVARYAMESSKQLAAGIINLGDMGYKTLSKYYQDLLPDGSNSPG-----WKVGGLAAAET 738

Query: 346  DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 405
            DNAG+VV+KDFV+RA+ISQF+AHTSPISALCFDPSGTLLVTASV+GNNINIFRIMPSC  
Sbjct: 739  DNAGMVVIKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASVHGNNINIFRIMPSCTC 798

Query: 406  SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465
            SGSG   YDW+SSHVHLYKLHRG+T+A IQDI FSHYSQWI+IVSSKGTCHVFV+SPFGG
Sbjct: 799  SGSGCQSYDWSSSHVHLYKLHRGMTTAIIQDISFSHYSQWISIVSSKGTCHVFVISPFGG 858

Query: 466  DSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCV-LPPPPVTLSVVSRIKYSSFGWL 524
            D+GFQT +S G +P LFPVLSLPWW +SS I  QQ    PPPP TLSVVSRIK  + GWL
Sbjct: 859  DAGFQTSNSHGEEPSLFPVLSLPWWFSSSCIINQQSFPAPPPPHTLSVVSRIKNCNAGWL 918

Query: 525  NTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHEL 584
            NTVS A+AS+ GKV VPSGAVAAVFHNS++ S QHV++R NSLEHLLVYTPSG+V+QHEL
Sbjct: 919  NTVSIAAASATGKVLVPSGAVAAVFHNSLSQSPQHVHTRVNSLEHLLVYTPSGHVIQHEL 978

Query: 585  LPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDG 644
             PS+G   SD G+R  + S   +Q+++L+VRVEP+QWWDVCRRS+WPEREE +SE     
Sbjct: 979  FPSMGAELSDGGTRTLSGSFRQIQDEELRVRVEPIQWWDVCRRSEWPEREECVSER---- 1034

Query: 645  HGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR 704
                +I  +KSD ED+Y  D L+I          K+ SVK  ERSHWYLSNAEVQ+SSGR
Sbjct: 1035 QKYAKIIVDKSDSEDSYRTDLLEI----------KSDSVKPLERSHWYLSNAEVQISSGR 1084

Query: 705  LPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNN 764
            +PIW  SKI F+ MD PR   H  GEFEIEK+ VHEVEI+RK+LLPVFDHF  IK  WN+
Sbjct: 1085 IPIWHKSKICFYMMDPPRVKNHVGGEFEIEKLPVHEVEIRRKDLLPVFDHFHSIKSGWND 1144

Query: 765  R 765
            R
Sbjct: 1145 R 1145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570542|ref|XP_003553444.1| PREDICTED: uncharacterized protein LOC100818381 [Glycine max]

 Score =  968 bits (2502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/767 (67%), Positives = 595/767 (77%), Gaps = 10/767 (1%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MK GKG+NNGLLPNSL+I+S CLKTVSTNA+TVASTVRSAGAS+AASIS++SED KDQVT
Sbjct: 1   MKTGKGKNNGLLPNSLRIVSLCLKTVSTNATTVASTVRSAGASLAASISSSSEDHKDQVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFD LE   S  K+VLLLGY NGFQVLDVEDAS F+ELVSKRDGPVSFLQMQP  V  
Sbjct: 61  WAGFDTLELDSSNLKRVLLLGYLNGFQVLDVEDASGFSELVSKRDGPVSFLQMQPLAVGC 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
           DG EGFRK HP LL V G+DT+ +      + L GV RDG +++Q+ N VNS T V+FYS
Sbjct: 121 DGQEGFRKSHPLLLAVCGDDTSKV--NHKSTSLSGVGRDGNVETQTRNNVNSSTVVQFYS 178

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +SH Y HVLRFRS+VCM+RCS RIVAVGLATQI+CFDA TLENK SVLTYPV QLAGQG
Sbjct: 179 LKSHSYVHVLRFRSTVCMIRCSSRIVAVGLATQIHCFDASTLENKLSVLTYPVTQLAGQG 238

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS-LVARYA 298
             G+NVGYGPMA+G RWLAYASN+ L SN G LSPQN + S     ++   S  LVARYA
Sbjct: 239 TTGVNVGYGPMALGRRWLAYASNSPLPSNLGCLSPQNFSASPGISPSTSPSSGSLVARYA 298

Query: 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358
           ME S+  AAG+ K    YCQELLPDGSSSPVS NS  KV R  G D DNAG+VVV+DFV+
Sbjct: 299 MESSRHLAAGIIK----YCQELLPDGSSSPVSSNSGVKVDRVTGIDADNAGMVVVQDFVS 354

Query: 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418
           R+IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS     S     +WNSS
Sbjct: 355 RSIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSFTCKSSATPSSNWNSS 414

Query: 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478
           HVHLYKLHRGIT A IQDICFS++SQWIAIVSSKGTCH+FVLSPFGGD+GFQ +SSQG +
Sbjct: 415 HVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFVLSPFGGDTGFQIISSQGEE 474

Query: 479 PYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKV 538
           P L PV+SLPWW T + I  Q  + PP P  LSV SRIKYSSFGWLNTV N+S +   KV
Sbjct: 475 PSLLPVVSLPWWYTPASIPYQPSLPPPAPAVLSVASRIKYSSFGWLNTVHNSSTNVTEKV 534

Query: 539 FVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSR 598
           FVPSGA+AA+FHNS++HS Q VNS+   LEH+LVYTPSG+VVQHELLPS+G+G +D G R
Sbjct: 535 FVPSGAIAAIFHNSLSHSQQPVNSKAKPLEHILVYTPSGHVVQHELLPSVGLGTTDSGLR 594

Query: 599 IRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCE 658
            ++ S++ +QED+ +V+VEP+QWWDVCRRS+WPER +    +T D  G +E  Q K    
Sbjct: 595 NQSTSVLHMQEDEFRVKVEPIQWWDVCRRSEWPERGDSCC-STFDRQGGIEGVQEKISYS 653

Query: 659 DNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKM 718
           D +G+DF+   D   EK   K+ S    +R HWYLSNAEVQ + GRLPIWQ SKI F+ M
Sbjct: 654 DFHGLDFVGSRDEAGEK-MVKSSSENMQDRFHWYLSNAEVQGNFGRLPIWQKSKICFYSM 712

Query: 719 DSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 765
               A+   +GEFEIEKV  +EVEI+RKELLPVFDHF  I+ SWN R
Sbjct: 713 SCAGASFSGTGEFEIEKVPANEVEIRRKELLPVFDHFHSIRSSWNER 759

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240253994|ref|NP_171837.7| autophagy 18G-like protein [Arabidopsis thaliana] gi|27311609|gb|AAO00770.1| Unknown protein [Arabidopsis thaliana] gi|332189445|gb|AEE27566.1| autophagy 18G-like protein [Arabidopsis thaliana]

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/774 (62%), Positives = 579/774 (74%), Gaps = 14/774 (1%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGKG+N+GLLPNS KIISSCLKTVS NA+ VAS+VRSA  +  A+  +A+ED KDQVT
Sbjct: 2   MKKGKGKNSGLLPNSFKIISSCLKTVSANATNVASSVRSA-GASVAASISAAEDDKDQVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGF  LE G  V + VLLLGYQNGFQV DVEDASNFNELVSKR GPVSFLQMQP P + 
Sbjct: 61  WAGFGILELGQHVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARS 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
              EGF   HP LLVVAG++TN    G + S  G + RDG  DS++G+ +N PT VRFYS
Sbjct: 121 GDHEGFWNSHPLLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINYPTTVRFYS 180

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +SH Y +VLRFRSSVCM+RCS R+VAVGLA QIYC DALTLENKFSVLTYPVPQ   QG
Sbjct: 181 LRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYPVPQPVRQG 240

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS-LVARYA 298
              +NVGYGPMAVGPRWLAYAS + +   +GRLSPQ  T S     +S  G S  +ARYA
Sbjct: 241 TTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSFMARYA 300

Query: 299 MEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
           ME SKQ A GL        KTLSKYCQ++LPDGS+SP SPN++WKVG  +G+D +NAG+V
Sbjct: 301 MESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVGGVSGSDAENAGMV 360

Query: 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
            VKD V+ A++SQFKAHTSPISALCFDPSGTLLVTASV GNNIN+F+IMPS   +  G+ 
Sbjct: 361 AVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNAPGDL 420

Query: 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
            Y+W SSHVHL+KLHRGITSA +QDICFS  SQW+AI+SSKGTCH+FVL+  G D+ FQ 
Sbjct: 421 SYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDAAFQP 480

Query: 472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNAS 531
              +G +P   P  SLPWW T S  S QQ + PP  V LSVVSRIKYSSFGWLNTVSNA+
Sbjct: 481 C--EGEEPTRLPASSLPWWFTQSLSSNQQSLSPPTAVALSVVSRIKYSSFGWLNTVSNAT 538

Query: 532 ASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMG 591
            ++ GKVFVPSGAVAAVFH S+ H  Q +NSRTN+LEH+LVYTPSG+VVQHELLPS+   
Sbjct: 539 TAATGKVFVPSGAVAAVFHKSVTHDLQ-LNSRTNALEHILVYTPSGHVVQHELLPSVCTE 597

Query: 592 PSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIF 651
             ++G R++  S + +QEDDL+V+VEP+QWWDVCRRSDW E EE + ++  +    +E  
Sbjct: 598 SPENGLRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPKSITEKQYDLETV 657

Query: 652 QNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSS 711
            N     ++  +  LD+N    E    K+CS K  ERSH YLSN EV+++SG LP+WQ+S
Sbjct: 658 SNHLTSHEDACLS-LDMNSHFSEDKYLKSCSEKPPERSHCYLSNFEVKVTSGMLPVWQNS 716

Query: 712 KISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 765
           KISF  MDSPR ++   GEFEIEKV  HE+EIK+K+LLPVFDHF   K +  +R
Sbjct: 717 KISFHVMDSPRDSSSTGGEFEIEKVPAHELEIKQKKLLPVFDHFHSTKATLEDR 770

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843152|ref|XP_002889457.1| hypothetical protein ARALYDRAFT_333664 [Arabidopsis lyrata subsp. lyrata] gi|297335299|gb|EFH65716.1| hypothetical protein ARALYDRAFT_333664 [Arabidopsis lyrata subsp. lyrata]

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/774 (62%), Positives = 576/774 (74%), Gaps = 14/774 (1%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MKKGKG+N+GLLPNS KIISSCLKTVS NA+ VAS+VRSA  +  A+  +A+ED KDQVT
Sbjct: 2   MKKGKGKNSGLLPNSFKIISSCLKTVSANATNVASSVRSA-GASVAASISAAEDDKDQVT 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGF  LE    V + VLLLGYQNGFQV DVEDASNFNELVSKR GPVSFLQMQP P + 
Sbjct: 61  WAGFGILELSQHVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARS 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
              EGF   HP LLVVAG+DT+    G + S  G + RDG  DS++G+ +N PT VRFYS
Sbjct: 121 GDHEGFGNSHPLLLVVAGDDTSGTGLGHSFSQNGSLARDGKSDSKAGDAINYPTTVRFYS 180

Query: 180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
            +SH Y +VLRFRSSVCM+RCS R+VAVGLA QIYC DALTLENKFSVLTYPVPQ   QG
Sbjct: 181 LRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCCDALTLENKFSVLTYPVPQPVRQG 240

Query: 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS-LVARYA 298
            + +NVGYGPMAVGPRWLAYAS + +   +GRLSPQ  T S     +S  G S ++ARYA
Sbjct: 241 TIRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSIMARYA 300

Query: 299 MEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
           ME SKQ A GL        KTLSKYCQ++LPDGS+SP SPNS+WKVG   G+D +NAG+V
Sbjct: 301 MESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNSIWKVGGVTGSDAENAGMV 360

Query: 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
            VKD V+ A++SQFKAHTSPISALCFDPSGTLLVTASV GNNIN+F+IMPS   +  G+ 
Sbjct: 361 AVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNAPGDL 420

Query: 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
            Y+W SSH+HL+KLHRGITSA +QDICFS  SQW+AI+SSKGTCH+FVL+  G D+  Q 
Sbjct: 421 SYEWESSHMHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDAAIQP 480

Query: 472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNAS 531
              +G +P   P  SL WW T S  + QQ +LPPP V LSVVSRIKYSSFGWLNTVSNA+
Sbjct: 481 C--EGEEPTRLPASSLSWWFTQSLSNNQQSLLPPPAVALSVVSRIKYSSFGWLNTVSNAA 538

Query: 532 ASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMG 591
            ++ GKVFVPSGAVAAVFH S+ H  Q +NSRTN+LEH+LVYTPSG+VVQHELLPS+   
Sbjct: 539 TAATGKVFVPSGAVAAVFHKSVTHDHQ-LNSRTNALEHVLVYTPSGHVVQHELLPSVCTE 597

Query: 592 PSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIF 651
             ++GS ++  S + +QEDDL+V+VEP+QWWDVCRRSDW E EE +  +  +    +E  
Sbjct: 598 SPENGSTVQRTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPRSITEKQYDLETV 657

Query: 652 QNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSS 711
            N     +   +  LDIN    E     +CS K  ERSH YLSN EV+++SG LP+WQ+S
Sbjct: 658 SNNLTSHEVACLS-LDINSHFGEDKYLISCSEKPPERSHCYLSNFEVKVTSGMLPVWQNS 716

Query: 712 KISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 765
           KISF  MDSPR ++   GEFEIEKV  HE+EIK+K+LLPVFDHF   K +  +R
Sbjct: 717 KISFHVMDSPRDSSSTGGEFEIEKVPAHELEIKQKKLLPVFDHFHSTKATLEDR 770

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845501|emb|CAN80611.1| hypothetical protein VITISV_035392 [Vitis vinifera]

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/780 (65%), Positives = 588/780 (75%), Gaps = 51/780 (6%)

Query: 5   KGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGF 64
           K +NNG +PNSL+ ISSC+KT ST        VRSAGASVAASIS   ++ KDQV  A F
Sbjct: 7   KPKNNGFIPNSLRFISSCIKTASTG-------VRSAGASVAASISGDPDERKDQVLCACF 59

Query: 65  DRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCE 124
           DRLE GPS FK VLLLGY NGFQVLDVED+SN +ELVS+RD PV+FLQMQP P K +G E
Sbjct: 60  DRLELGPSNFKHVLLLGYSNGFQVLDVEDSSNVSELVSRRDDPVTFLQMQPIPAKSEGRE 119

Query: 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC 184
           GFR  HP LLVVAG++T  L P Q+    G VRDG ++ Q+GN VNSPTAVRFYS +SH 
Sbjct: 120 GFRASHPLLLVVAGDETKGLGPIQSVRD-GPVRDGYIEPQAGNVVNSPTAVRFYSLRSHN 178

Query: 185 YEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 244
           Y HVLRFRS+V MVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQL GQG  G+N
Sbjct: 179 YVHVLRFRSTVYMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGLAGVN 238

Query: 245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT-PSGVSPSTSPGGSSLVARYAMEHSK 303
           +GYGPM VG RWLAYASN  LLSN GRLSPQ+LT   GVSPSTSP   SLVARYAME SK
Sbjct: 239 IGYGPMDVGLRWLAYASNNPLLSNMGRLSPQSLTPSPGVSPSTSPSSGSLVARYAMESSK 298

Query: 304 QFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHA--GADMDNAGIVVVK 354
           Q AAG+        KTLSKYCQEL PDGSSSPVS +S WKVGR A    + D+AG+VVVK
Sbjct: 299 QLAAGIINLGDMGYKTLSKYCQELRPDGSSSPVSSHSSWKVGRVASHSNETDSAGMVVVK 358

Query: 355 DFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414
           DFV+RA++SQF+AHTSPISALCFDPSGT+LVTAS++GNNINIFRIMPSC ++ SG   YD
Sbjct: 359 DFVSRAVVSQFRAHTSPISALCFDPSGTVLVTASIHGNNINIFRIMPSCSQNASG---YD 415

Query: 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474
           WN+SHVHLYKLHRG+TSA IQDICFSHYSQWIAIVSSKGTCH+FVLSPFGG+SG Q  +S
Sbjct: 416 WNASHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSKGTCHIFVLSPFGGESGLQIQNS 475

Query: 475 QGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPP--VTLSVVSRIKYSSFGWLNTVSNASA 532
                 L PVLSLPWW TSS +  QQ   PPPP  +TLSVVSRIK S  GWLN+VSN ++
Sbjct: 476 HVRSS-LLPVLSLPWWSTSSFMINQQSFSPPPPQTITLSVVSRIKNS--GWLNSVSNVAS 532

Query: 533 SSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMG- 591
           S+ GKV VPSGAVAAVFH+S+ H     + + N+LEHLLVYTPSG+V+Q+ELLPS+G G 
Sbjct: 533 SAAGKVSVPSGAVAAVFHSSVPHDLLPAHLKVNALEHLLVYTPSGHVIQYELLPSMGGGE 592

Query: 592 PSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVE-I 650
           PS+  S   + SL+ +Q+++L+V+VEPVQWWDVCR   WPEREE I+      HG  E +
Sbjct: 593 PSETASGTGSGSLVQVQDEELRVKVEPVQWWDVCRGMAWPEREECIAGIM---HGRQETV 649

Query: 651 FQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQS 710
             + SDCEDN                T +   VK +ER HWYLSNAEVQ+ SGR+PIWQ 
Sbjct: 650 VMDTSDCEDN---------------DTGEMDLVKPHERLHWYLSNAEVQIRSGRIPIWQK 694

Query: 711 SKISFFKMD---SPRAN--THASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 765
           SKI FF MD   S   N      GE EIEK  V EVEIKRK+LLPVFDHF  I+  W+ R
Sbjct: 695 SKIYFFTMDPLVSDECNFTKDTGGEIEIEKFPVQEVEIKRKDLLPVFDHFHRIQSDWSER 754

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357133727|ref|XP_003568475.1| PREDICTED: uncharacterized protein LOC100842038 [Brachypodium distachyon]

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/778 (60%), Positives = 574/778 (73%), Gaps = 39/778 (5%)

Query: 1   MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
           MK+GKG  NGLLP+SL+IISSCLKTVS+NA +VASTVRSAGASVAASI+  +ED KDQV 
Sbjct: 1   MKRGKGGRNGLLPSSLRIISSCLKTVSSNAGSVASTVRSAGASVAASIAPQAEDEKDQVL 60

Query: 61  WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
           WAGFD+LE  PS FK VLL+GY NGFQVLDVEDA+N  ELVSKRDGPV+FLQMQP P+  
Sbjct: 61  WAGFDKLELHPSSFKHVLLVGYSNGFQVLDVEDAANVCELVSKRDGPVTFLQMQPTPLYS 120

Query: 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF 180
           +  EGFR  HP LLVVAG++TN L   Q       +RD   + Q+GNC+++PT VRFYS 
Sbjct: 121 ESTEGFRASHPMLLVVAGDETNGLGMVQGGRLSALIRDTNSEPQTGNCISTPTVVRFYSL 180

Query: 181 QSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGA 240
           +SH Y HVLRFRS+V +VRCSPRIVAV LA QIYCFDA+TLENKFSVL+YP+     QGA
Sbjct: 181 KSHTYVHVLRFRSAVYIVRCSPRIVAVALAAQIYCFDAVTLENKFSVLSYPL-----QGA 235

Query: 241 VGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGGSSLVARYAM 299
            G+N+GYGPM+VGPRWLAYASN  +L ++GRLSPQNLTPS GVSPSTSP   SLVARYAM
Sbjct: 236 PGVNIGYGPMSVGPRWLAYASNGPVLPSTGRLSPQNLTPSPGVSPSTSPSNGSLVARYAM 295

Query: 300 EHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVS----------PNSVWKVGRHAG 342
           E SKQ AAG+        KTLSKYCQELLPDGS+SP+S          P+SV  +     
Sbjct: 296 ESSKQLAAGIINLGDMGYKTLSKYCQELLPDGSNSPLSSSPGRRSVKLPSSVHPL----- 350

Query: 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402
            + DN G+V++KD  ++ +ISQF+AHTSPISALCFDPSGTLLVTASV+G+NIN+FRIMP+
Sbjct: 351 -EADNIGMVIIKDVTSKVVISQFRAHTSPISALCFDPSGTLLVTASVHGHNINVFRIMPT 409

Query: 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462
           C+ +GSG+ +YDW +SHVHLYKL+RG+TSA IQDI FSH+SQWI+IVS++GTCH+F LSP
Sbjct: 410 CIANGSGSKRYDWTASHVHLYKLYRGMTSAVIQDISFSHFSQWISIVSARGTCHIFTLSP 469

Query: 463 FGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFG 522
           FGGDS  Q  +S    P L P  S PWW   S + EQQ    P  VT SVVSRIK SS G
Sbjct: 470 FGGDSSLQPQNSHSDGPPLAPCQSRPWWSKPSFLMEQQLHPVPSTVTNSVVSRIKNSSSG 529

Query: 523 WLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQH 582
           WLNTVSN +AS+ GK+ VPSGA+ A+F+NSI   S  V S+ N+LEHLLVY+PSG+V+QH
Sbjct: 530 WLNTVSNVAASASGKLSVPSGAITAIFYNSIFQGSLPVPSKANALEHLLVYSPSGHVIQH 589

Query: 583 ELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATC 642
           EL+PS G   SD    +   +   LQ+D+L V  EPVQWWDVCRR++WPER++ I+  T 
Sbjct: 590 ELMPSSGSESSDSSPTVGPGAQSQLQDDELHVTAEPVQWWDVCRRTNWPERDQDIANVTF 649

Query: 643 DGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSS 702
           D      +  + SDCED+   D    ND I  K       ++  ERS WYLSNAEVQ+SS
Sbjct: 650 DNQRNSMMAVDTSDCEDSEHSDVTPSNDGISRKE-----DMRVRERSSWYLSNAEVQISS 704

Query: 703 GRLPIWQSSKISFFKMDSP-----RANTHASGEFEIEKVSVHEVEIKRKELLPVFDHF 755
            R+PIW+ SKI F+ +D P     +  +   GE EIEK S+HEVE+KR+ELLP F  F
Sbjct: 705 SRIPIWEKSKICFYVIDHPATELVKTGSVNGGEIEIEKSSLHEVELKRRELLPAFKQF 762

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	765
TAIR|locus:2020853	959	ATG18G "AT1G03380" [Arabidopsi	0.993	0.792	0.589	2.5e-239
TAIR|locus:2199512	927	ATG18H "AT1G54710" [Arabidopsi	0.826	0.681	0.539	1e-193
TAIR|locus:2157523	763	G18F "AT5G54730" [Arabidopsis	0.363	0.364	0.420	2.6e-69
ZFIN|ZDB-GENE-040426-1257	910	bcas3 "breast carcinoma amplif	0.269	0.226	0.322	1.9e-26
UNIPROTKB|F1P1V9	803	BCAS3 "Uncharacterized protein	0.273	0.260	0.298	8.7e-24
FB|FBgn0262684	1122	CG43154 [Drosophila melanogast	0.436	0.297	0.288	1.4e-24
UNIPROTKB|F1S209	820	BCAS3 "Uncharacterized protein	0.275	0.257	0.283	3.2e-23
MGI|MGI:2385848	928	Bcas3 "breast carcinoma amplif	0.273	0.225	0.285	1.6e-22
UNIPROTKB|Q9H6U6	928	BCAS3 "Breast carcinoma-amplif	0.273	0.225	0.280	2.6e-22
RGD|1560788	803	Bcas3 "breast carcinoma amplif	0.273	0.260	0.280	2.8e-22

TAIR|locus:2020853 ATG18G "AT1G03380" [Arabidopsis thaliana (taxid:3702)]

 Score = 2307 (817.2 bits), Expect = 2.5e-239, P = 2.5e-239
 Identities = 456/774 (58%), Positives = 543/774 (70%)

Query:     1 MKKGKGRNNGLLPNSLKIISSCLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKDQVT 60
             MKKGKG+N+GLLPNS KIISSCLK                            +D KDQVT
Sbjct:     2 MKKGKGKNSGLLPNSFKIISSCLKTVSANATNVASSVRSAGASVAASISAAEDD-KDQVT 60

Query:    61 WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
             WAGF  LE G  V + VLLLGYQNGFQV DVEDASNFNELVSKR GPVSFLQMQP P + 
Sbjct:    61 WAGFGILELGQHVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARS 120

Query:   121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
                EGF   HP LLVVAG++TN    G + S  G + RDG  DS++G+ +N PT VRFYS
Sbjct:   121 GDHEGFWNSHPLLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINYPTTVRFYS 180

Query:   180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
              +SH Y +VLRFRSSVCM+RCS R+VAVGLA QIYC DALTLENKFSVLTYPVPQ   QG
Sbjct:   181 LRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYPVPQPVRQG 240

Query:   240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNXXXXXXXX-XXXXXXXXXXARYA 298
                +NVGYGPMAVGPRWLAYAS + +   +GRLSPQ                    ARYA
Sbjct:   241 TTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSFMARYA 300

Query:   299 MEHSKQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
             ME SKQ A GL        KTLSKYCQ++LPDGS+SP SPN++WKVG  +G+D +NAG+V
Sbjct:   301 MESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVGGVSGSDAENAGMV 360

Query:   352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
              VKD V+ A++SQFKAHTSPISALCFDPSGTLLVTASV GNNIN+F+IMPS   +  G+ 
Sbjct:   361 AVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNAPGDL 420

Query:   412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
              Y+W SSHVHL+KLHRGITSA +QDICFS  SQW+AI+SSKGTCH+FVL+  G D+ FQ 
Sbjct:   421 SYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDAAFQP 480

Query:   472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCXXXXXXXXXXXXXRIKYSSFGWLNTVSNAS 531
                +G +P   P  SLPWW T S  S QQ              RIKYSSFGWLNTVSNA+
Sbjct:   481 C--EGEEPTRLPASSLPWWFTQSLSSNQQSLSPPTAVALSVVSRIKYSSFGWLNTVSNAT 538

Query:   532 ASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMG 591
              ++ GKVFVPSGAVAAVFH S+ H  Q +NSRTN+LEH+LVYTPSG+VVQHELLPS+   
Sbjct:   539 TAATGKVFVPSGAVAAVFHKSVTHDLQ-LNSRTNALEHILVYTPSGHVVQHELLPSVCTE 597

Query:   592 PSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIF 651
               ++G R++  S + +QEDDL+V+VEP+QWWDVCRRSDW E EE + ++  +    +E  
Sbjct:   598 SPENGLRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPKSITEKQYDLETV 657

Query:   652 QNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSS 711
              N     ++  +  LD+N    E    K+CS K  ERSH YLSN EV+++SG LP+WQ+S
Sbjct:   658 SNHLTSHEDACLS-LDMNSHFSEDKYLKSCSEKPPERSHCYLSNFEVKVTSGMLPVWQNS 716

Query:   712 KISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 765
             KISF  MDSPR ++   GEFEIEKV  HE+EIK+K+LLPVFDHF   K +  +R
Sbjct:   717 KISFHVMDSPRDSSSTGGEFEIEKVPAHELEIKQKKLLPVFDHFHSTKATLEDR 770

GO:0003674 "molecular_function" evidence=ND

GO:0042594 "response to starvation" evidence=IEP

TAIR|locus:2199512 ATG18H "AT1G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1687 (598.9 bits), Expect = 1.0e-193, Sum P(2) = 1.0e-193
 Identities = 360/667 (53%), Positives = 438/667 (65%)

Query:     3 KGKGRNNGLLPNSLKIISSCLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKDQVTWA 62
             K  G  NG LPNSLK IS+C++                             +LKDQV W+
Sbjct:    20 KNNG-TNGFLPNSLKFISTCIRTASSGVRSASASVAASLSSDS-------HELKDQVLWS 71

Query:    63 GFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDG 122
              FDRL    S FK VLLLGY NGFQVLD++D+++  E VS+RD PV+FLQMQP P K DG
Sbjct:    72 SFDRLHTSESSFKNVLLLGYTNGFQVLDIDDSNDVTEFVSRRDDPVTFLQMQPLPAKCDG 131

Query:   123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS 182
              EGFR  HP LL VA E   +     +R   G VR+G  D  +     SPT VRFYS +S
Sbjct:   132 VEGFRSSHPILLAVADEAKGSGPIVTSRD--GSVRNGYEDPLA----LSPTVVRFYSLRS 185

Query:   183 HCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVG 242
             H Y HVLRFRS+V MVRCSPRIVAVGL +QIYCFDALTLENKFSVL+YPVPQL  QG  G
Sbjct:   186 HNYVHVLRFRSTVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLSYPVPQLGNQGISG 245

Query:   243 INVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNXXXXXXXXXXXXXXXXXXARYAMEHS 302
             +NVGYGPMAVG RWLAYASN+ L S+ GRLSPQN                  ARYAME S
Sbjct:   246 VNVGYGPMAVGARWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPNNGNLVARYAMESS 305

Query:   303 KQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNSVWKVGR---HAGADMDNAGIVV 352
             K  AAGL        KT+SKYCQ+L  DG    +S +   KVGR   H+ A+ D  G V+
Sbjct:   306 KHLAAGLLNLGDKGYKTISKYCQDLKHDGPGPSLSSSPGRKVGRVGSHS-AESDVVGTVI 364

Query:   353 VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412
             VKDF +RAII+QF+AHTSPISALCFDPSGTLLVTAS++GNNIN+FRIMP+  ++G G   
Sbjct:   365 VKDFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRIMPTPTKNGPGAQS 424

Query:   413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472
             YDW+SSHV LYKLHRG+TSA IQDICFS YSQWIAIVSSK TCH++VLSPFGG++  +  
Sbjct:   425 YDWSSSHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYVLSPFGGENVLEIR 484

Query:   473 SSQGGDPYLFPVLSLPWWCTSSGISEQQCXXXXXXXXXXXXXRIKYSSFGWLNTVSNASA 532
             +SQ   P L P LSLPWW + S ++                 RIK ++F       +A++
Sbjct:   485 NSQFDGPTLAPTLSLPWWSSPSFMTTHFSYPPPASVTLSVVSRIKCNNF------FHAAS 538

Query:   533 SSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGP 592
             S +GK   PSG +AAVFH S+   SQ   S + +L++LLVYTPSG+VVQ++L+PS+G   
Sbjct:   539 SVVGKPTFPSGCLAAVFHQSVPQESQ---SSSPALDYLLVYTPSGHVVQYKLIPSLGGDQ 595

Query:   593 SDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQ 652
             ++  +R  A S +   E++L+V+VEPVQ WDVCRR+DWPEREE I   T  G    E+  
Sbjct:   596 AESNTRNGATSGLT-SEEELRVKVEPVQCWDVCRRADWPEREENICGLTYGGRKNAELTV 654

Query:   653 NKSDCED 659
             + SD ED
Sbjct:   655 DTSDSED 661

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0042594 "response to starvation" evidence=IEP

GO:0007033 "vacuole organization" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2157523 G18F "AT5G54730" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
 Identities = 130/309 (42%), Positives = 185/309 (59%)

Query:   162 DSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTL 221
             D+     V +PT V  YS +S  Y H L+FR+++  VRC  RIVAV  A QI CFDA TL
Sbjct:   150 DNPGSETVATPTNVYVYSLKSQSYVHTLKFRATIYSVRCCSRIVAVLQAAQIDCFDAATL 209

Query:   222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNXXXXX 281
             E  + ++T  +      G++G  VGYGP+AVGPRW+AY+ + +  S+S   + +      
Sbjct:   210 EMDYRIVTNSIVC----GSLG--VGYGPLAVGPRWIAYSGSRIATSSSAIFTSE------ 257

Query:   282 XXXXXXXXXXXXXARYAMEHSKQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNSV 334
                          A++A + SKQ A+G++       ++L+KYC E+LP+    P  P   
Sbjct:   258 --IVSLSTSSPSVAQFARDSSKQLASGIANLGDKGYRSLTKYCSEVLPN----PYIPGLK 311

Query:   335 W-KVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN 393
                VG    AD ++ G+V+VKD   +++I+QFKAH SPISALCFD SG LLVTAS+ G+N
Sbjct:   312 GIGVGNEKVADAESIGMVIVKDITNKSVITQFKAHKSPISALCFDQSGLLLVTASIQGHN 371

Query:   394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453
             IN+FRIMP+   S +        ++  HL++L RG T+A IQDICFS  S  I + SS+G
Sbjct:   372 INVFRIMPTISTSRAVK-----TTTFAHLFRLQRGFTNAVIQDICFSKDSNLIVVGSSRG 426

Query:   454 TCHVFVLSP 462
             T H+F ++P
Sbjct:   427 TSHLFEINP 435

GO:0003674 "molecular_function" evidence=ND

GO:0042594 "response to starvation" evidence=IEP

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

ZFIN|ZDB-GENE-040426-1257 bcas3 "breast carcinoma amplified sequence 3" [Danio rerio (taxid:7955)]

 Score = 284 (105.0 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
 Identities = 72/223 (32%), Positives = 106/223 (47%)

Query:   247 YGPMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQ 304
             + P+A+G RWLAYA N L+  +  R      N                       +   Q
Sbjct:   226 FNPIALGSRWLAYAENKLIRCHQSRGGACGDNAQSYTATVISAAKTLKTGLTMVGKVVTQ 285

Query:   305 FAAGLSKTLSKYCQELLPDGSS-SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363
              A  L   +    +     G+  SP  P  V  +  H    +    ++V +D     +I+
Sbjct:   286 LAGTLPSGVPDE-EGTAHSGTRRSPHQPGVVTIIDTHT---VGEGQVLVSEDSDGEGLIA 341

Query:   364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-L 422
              F AH  PIS + F+PSG LLVTA   G++ ++F+I+          H +  + S VH L
Sbjct:   342 HFPAHDKPISCMAFNPSGMLLVTADTLGHDFHVFQIL---------THPWASSQSAVHHL 392

Query:   423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465
             Y LHRG T A +QDICFSH  +W+ I + +GT HVF ++P+GG
Sbjct:   393 YTLHRGETEAKVQDICFSHDCRWVVISTLRGTSHVFPINPYGG 435

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1P1V9 BCAS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 267 (99.0 bits), Expect = 8.7e-24, Sum P(3) = 8.7e-24
 Identities = 68/228 (29%), Positives = 108/228 (47%)

Query:   249 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 306
             P+A+G RWLAYA N L+  +  R      N                       +   Q  
Sbjct:   232 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTIKTGLTMVGKVVTQLT 291

Query:   307 AGLSKTLSKYCQELLPDGS--SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364
               L    ++  +E+L   +   SP+ P  +  +     A+     ++V +D  +  I++ 
Sbjct:   292 GTLPSGATE--EEILAHSNVRRSPLVPGVITIIDTETVAE---GQVLVSEDSDSAGIVAH 346

Query:   365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-LY 423
             F AH  PI  + F+PSG LLVT    G++ ++F+I+          H +  + S VH LY
Sbjct:   347 FPAHEKPICCMAFNPSGMLLVTTDTLGHDFHVFQIL---------THPWSSSQSAVHHLY 397

Query:   424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
              LHRG T A +QDI FSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct:   398 TLHRGETEAKVQDISFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445

GO:0005737 "cytoplasm" evidence=IEA

GO:0071944 "cell periphery" evidence=IEA

FB|FBgn0262684 CG43154 [Drosophila melanogaster (taxid:7227)]

 Score = 303 (111.7 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
 Identities = 110/381 (28%), Positives = 175/381 (45%)

Query:   120 DDGCEGFRKLHPFLLVVAGEDT--NTLAPGQNRSHLGGVRDGM------MDSQSGNCVNS 171
             D+  + F +  P +  V G     + L  G +   LGG   G+      +   SG  V++
Sbjct:   165 DEPVDSFAEKRPLVAFVDGGSAAASGLLAGSSGLGLGGGGGGVTTVGGSVGGVSGIGVSA 224

Query:   172 P---TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVL 228
                 +AV F S ++      ++F+++V  ++ +   V +    +I  FDA TLE++ ++ 
Sbjct:   225 SAQFSAVNFMSLKTGVQVKTIKFKNAVLDIQANRSAVVITFHERIAVFDARTLEDRLTIT 284

Query:   229 T-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLS--NSGRLSPQNXXXXXXXXX 285
             T YP P        GIN    P+A+GPRWLAYA + LL S  + G    +          
Sbjct:   285 TCYPSP--------GINPN--PIALGPRWLAYAEHKLLHSKRSGGGCDGEGVPSYTATVL 334

Query:   286 XXXXXXXXXARYAMEHSKQFAAGLSKTLS----KYCQELLPDGSSSPVSPNS--VWKVG- 338
                       R   E  +Q AAGL+ T +              S  P +  S  V  +  
Sbjct:   335 NAAKSLSKGLR---EFGEQVAAGLTGTTAGSGASSKSSSFDSASGGPDAKQSGVVTIIDV 391

Query:   339 RHAGADMD-NAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLLVTASVYGNN 393
             +H   D    +G  +     ++     I++ F AH+  + A+ FD SG LL+TA   G++
Sbjct:   392 KHPVKDYSPTSGTPLSSTAGSQGGGDPIVAHFVAHSEALVAMEFDSSGMLLLTADRRGHD 451

Query:   394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453
              ++FR+ P  +            + H HLY LHRG TSA +Q I FS  S+W A+ + +G
Sbjct:   452 FHVFRVQPHPVGPSLA-------AVH-HLYVLHRGDTSAKVQHIAFSLDSRWAAVSTLRG 503

Query:   454 TCHVFVLSPFGGDSGFQTLSS 474
             T HVF ++P+GG  G +T +S
Sbjct:   504 TTHVFPITPYGGAMGVRTHTS 524

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1S209 BCAS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 266 (98.7 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
 Identities = 64/226 (28%), Positives = 105/226 (46%)

Query:   249 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 306
             P+A+G RWLAYA N L+  +  R      N                       +   Q  
Sbjct:   228 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKTGLTMVGKVVTQLT 287

Query:   307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366
               L   +++    +  +   SP+ P  +  +       +    ++V +D  +  I++ F 
Sbjct:   288 GTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 344

Query:   367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-LYKL 425
             AH  P+  + F+ SG LLVT    G++ ++F+I+          H +  + S VH LY L
Sbjct:   345 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL---------THPWSSSQSAVHHLYTL 395

Query:   426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
             HRG T A +QDICFSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct:   396 HRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 441

GO:0071944 "cell periphery" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2385848 Bcas3 "breast carcinoma amplified sequence 3" [Mus musculus (taxid:10090)]

 Score = 264 (98.0 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
 Identities = 65/228 (28%), Positives = 105/228 (46%)

Query:   249 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 306
             P+A+G RWLAYA N L+  +  R      N                       +   Q  
Sbjct:   232 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVLSAAKTLKSGLTMVGKVVTQLT 291

Query:   307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366
               L   +++    L  +   SP+ P  +  +       +    ++V +D  +  I++ F 
Sbjct:   292 GTLPSGVTEDDVALHCNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 348

Query:   367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---HLY 423
             AH  P+  + F+ SG LLVT    G++ ++F+I+            + W+SS     HLY
Sbjct:   349 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILT-----------HPWSSSQCAVHHLY 397

Query:   424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
              LHRG T A +QDICFSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct:   398 TLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

UNIPROTKB|Q9H6U6 BCAS3 "Breast carcinoma-amplified sequence 3" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
 Identities = 64/228 (28%), Positives = 105/228 (46%)

Query:   249 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 306
             P+A+G RWLAYA N L+  +  R      N                       +   Q  
Sbjct:   232 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLT 291

Query:   307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366
               L   +++    +  +   SP+ P  +  +       +    ++V +D  +  I++ F 
Sbjct:   292 GTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 348

Query:   367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---HLY 423
             AH  P+  + F+ SG LLVT    G++ ++F+I+            + W+SS     HLY
Sbjct:   349 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILT-----------HPWSSSQCAVHHLY 397

Query:   424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
              LHRG T A +QDICFSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct:   398 TLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445

GO:0005737 "cytoplasm" evidence=IEA

GO:0071944 "cell periphery" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

RGD|1560788 Bcas3 "breast carcinoma amplified sequence 3" [Rattus norvegicus (taxid:10116)]

 Score = 259 (96.2 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
 Identities = 64/228 (28%), Positives = 104/228 (45%)

Query:   249 PMAVGPRWLAYASNTLLLSNSGR--LSPQNXXXXXXXXXXXXXXXXXXARYAMEHSKQFA 306
             P+A+G RWLAYA N L+  +  R      N                       +   Q  
Sbjct:   232 PIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLT 291

Query:   307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366
               L   ++     +  +   SP+ P  +  +       +    ++V +D  +  I++ F 
Sbjct:   292 GTLPSGVTDDDIAIHCNSRRSPLVPGIITVIDTET---VGEGQVLVSEDSDSDGIVAHFP 348

Query:   367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---HLY 423
             AH  P+  + F+ SG LLVT    G++ ++F+I+            + W+SS     HLY
Sbjct:   349 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILT-----------HPWSSSQCAVHHLY 397

Query:   424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
              LHRG T A +QDICFSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct:   398 TLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0071944 "cell periphery" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023631001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (998 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	765
pfam12490	245	pfam12490, BCAS3, Breast carcinoma amplified seque	1e-86
smart00320	40	smart00320, WD40, WD40 repeats	0.001
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.004

>gnl|CDD|221602 pfam12490, BCAS3, Breast carcinoma amplified sequence 3

 Score =  273 bits (700), Expect = 1e-86
 Identities = 113/253 (44%), Positives = 149/253 (58%), Gaps = 15/253 (5%)

Query: 505 PPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT 564
           PPPVTLSVVSRIK  + GWL TV+ A++S+ GK  V SGAVA+VFHN    +S+  +   
Sbjct: 1   PPPVTLSVVSRIKNGNSGWLGTVTGAASSATGKPLVVSGAVASVFHNCSGKNSESADGIK 60

Query: 565 -NSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWD 623
            NS +HLLV++PSG+++Q+ L PS+G G S +  R    S   + E +L++ VEPVQ WD
Sbjct: 61  SNSKDHLLVFSPSGHLIQYLLRPSVG-GDSGEIPRNGVPSESQIDETELRLTVEPVQQWD 119

Query: 624 VCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSV 683
           VCRRS+WPEREE ++    +     +             +    I+D  V K      S 
Sbjct: 120 VCRRSNWPEREENVAPLGENNPLDADAKVEPEVGRKGNSVHP--ISDSAVGK-----EST 172

Query: 684 KSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRANT-----HASGEFEIEKVS 737
            S E+ H YLSNAEVQ  SG   P+WQ  K SF+ M SP           SGE EIEK+ 
Sbjct: 173 SSEEKDHLYLSNAEVQTHSGPHRPLWQGPKFSFYVMQSPTGKELENSGSLSGEIEIEKLP 232

Query: 738 VHEVEIKRKELLP 750
             EVEI+RK+L+P
Sbjct: 233 TREVEIRRKDLVP 245

This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer. Length = 245

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 358 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 397
           +  ++   K HT P++++ F P G  L + S     I ++
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGS-DDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 20/97 (20%)

Query: 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421
               K HT  ++ + F P G LL T S     I ++ +                    + 
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGS-GDGTIKVWDL---------------ETGELLR 45

Query: 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
             K H    +  ++D+  S    ++A  SS  T  ++
Sbjct: 46  TLKGH----TGPVRDVAASADGTYLASGSSDKTIRLW 78

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	765
KOG2109	788	consensus WD40 repeat protein [General function pr	100.0
PF12490	251	BCAS3: Breast carcinoma amplified sequence 3 ; Int	100.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	100.0
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.93
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.91
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.91
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.89
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.89
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.87
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.85
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.84
KOG0286	343	consensus G-protein beta subunit [General function	99.84
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.83
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.82
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0266	456	consensus WD40 repeat-containing protein [General	99.81
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.81
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.8
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.8
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.8
PLN00181	793	protein SPA1-RELATED; Provisional	99.8
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.8
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.79
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.79
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.79
KOG0266	456	consensus WD40 repeat-containing protein [General	99.78
PLN00181	793	protein SPA1-RELATED; Provisional	99.78
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.78
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.78
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.77
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.77
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.76
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.75
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.75
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.74
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.74
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.74
KOG0286	343	consensus G-protein beta subunit [General function	99.74
PTZ00421	493	coronin; Provisional	99.73
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.73
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.73
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.71
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.71
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.7
PTZ00420	568	coronin; Provisional	99.7
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.7
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.69
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.69
KOG0643	327	consensus Translation initiation factor 3, subunit	99.69
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.68
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.68
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.68
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.67
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.67
PTZ00421	493	coronin; Provisional	99.67
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.66
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.66
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.66
KOG0296	399	consensus Angio-associated migratory cell protein	99.66
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.66
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.65
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.65
PTZ00420	568	coronin; Provisional	99.64
KOG0645	312	consensus WD40 repeat protein [General function pr	99.64
KOG0645	312	consensus WD40 repeat protein [General function pr	99.64
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.63
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.62
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.6
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.6
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.6
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.59
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.58
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.58
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.58
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.58
KOG0643	327	consensus Translation initiation factor 3, subunit	99.58
KOG2055	514	consensus WD40 repeat protein [General function pr	99.54
KOG2096	420	consensus WD40 repeat protein [General function pr	99.54
KOG0289	506	consensus mRNA splicing factor [General function p	99.54
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.54
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.53
KOG1274	933	consensus WD40 repeat protein [General function pr	99.53
KOG0641	350	consensus WD40 repeat protein [General function pr	99.53
KOG1539	910	consensus WD repeat protein [General function pred	99.53
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.51
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.51
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.51
KOG1539	910	consensus WD repeat protein [General function pred	99.51
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.5
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.49
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.49
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.48
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.48
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.47
KOG0267	825	consensus Microtubule severing protein katanin p80	99.47
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.46
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.45
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.45
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.45
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.45
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.43
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.42
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.42
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.42
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.41
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.41
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.4
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.39
KOG0639	705	consensus Transducin-like enhancer of split protei	99.39
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.39
KOG1273	405	consensus WD40 repeat protein [General function pr	99.39
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.39
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.38
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.38
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.37
KOG0267	825	consensus Microtubule severing protein katanin p80	99.37
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.37
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.37
KOG0641	350	consensus WD40 repeat protein [General function pr	99.37
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.36
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.36
KOG0289	506	consensus mRNA splicing factor [General function p	99.36
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.34
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.33
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.33
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.32
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.32
KOG0296	399	consensus Angio-associated migratory cell protein	99.32
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.31
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.3
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.3
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.3
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.28
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.25
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.25
KOG2096	420	consensus WD40 repeat protein [General function pr	99.24
KOG0646	476	consensus WD40 repeat protein [General function pr	99.24
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.24
KOG1274	933	consensus WD40 repeat protein [General function pr	99.23
KOG2048	691	consensus WD40 repeat protein [General function pr	99.19
PRK11028	330	6-phosphogluconolactonase; Provisional	99.19
KOG0646	476	consensus WD40 repeat protein [General function pr	99.18
KOG2055	514	consensus WD40 repeat protein [General function pr	99.18
KOG0639	705	consensus Transducin-like enhancer of split protei	99.16
KOG4328	498	consensus WD40 protein [Function unknown]	99.14
KOG4328	498	consensus WD40 protein [Function unknown]	99.14
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.13
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.12
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.11
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.1
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.09
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.09
COG2319	466	FOG: WD40 repeat [General function prediction only	99.09
PRK01742	429	tolB translocation protein TolB; Provisional	99.08
KOG2048	691	consensus WD40 repeat protein [General function pr	99.06
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.03
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.02
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.02
PRK03629	429	tolB translocation protein TolB; Provisional	99.01
KOG0302	440	consensus Ribosome Assembly protein [General funct	98.98
KOG1188	376	consensus WD40 repeat protein [General function pr	98.97
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.97
PRK05137	435	tolB translocation protein TolB; Provisional	98.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.95
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.93
COG2319	466	FOG: WD40 repeat [General function prediction only	98.92
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.91
KOG2109	788	consensus WD40 repeat protein [General function pr	98.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.9
KOG1273	405	consensus WD40 repeat protein [General function pr	98.9
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.88
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.79
PRK02889	427	tolB translocation protein TolB; Provisional	98.78
KOG1188	376	consensus WD40 repeat protein [General function pr	98.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.74
PRK04922	433	tolB translocation protein TolB; Provisional	98.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.7
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.69
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.69
KOG1963	792	consensus WD40 repeat protein [General function pr	98.69
PRK11028	330	6-phosphogluconolactonase; Provisional	98.69
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.67
KOG1963	792	consensus WD40 repeat protein [General function pr	98.66
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.63
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.63
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.62
PRK01742	429	tolB translocation protein TolB; Provisional	98.59
PRK00178	430	tolB translocation protein TolB; Provisional	98.56
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.52
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.5
PRK05137	435	tolB translocation protein TolB; Provisional	98.48
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.46
PRK04922	433	tolB translocation protein TolB; Provisional	98.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.45
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.42
KOG2139	445	consensus WD40 repeat protein [General function pr	98.42
PRK03629	429	tolB translocation protein TolB; Provisional	98.42
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.41
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.37
KOG0649	325	consensus WD40 repeat protein [General function pr	98.37
PRK02889	427	tolB translocation protein TolB; Provisional	98.36
KOG0649	325	consensus WD40 repeat protein [General function pr	98.36
PRK04792	448	tolB translocation protein TolB; Provisional	98.36
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.34
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.31
KOG1310	758	consensus WD40 repeat protein [General function pr	98.31
PRK01029	428	tolB translocation protein TolB; Provisional	98.29
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.24
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.22
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.22
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.21
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.19
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.19
KOG4227	609	consensus WD40 repeat protein [General function pr	98.18
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.15
PRK04792	448	tolB translocation protein TolB; Provisional	98.12
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.09
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.09
PRK00178	430	tolB translocation protein TolB; Provisional	98.06
KOG1310	758	consensus WD40 repeat protein [General function pr	98.05
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.03
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.02
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.99
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.99
PRK04043	419	tolB translocation protein TolB; Provisional	97.96
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.93
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.92
KOG2139	445	consensus WD40 repeat protein [General function pr	97.9
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.9
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.87
KOG2315	566	consensus Predicted translation initiation factor	97.86
PRK01029	428	tolB translocation protein TolB; Provisional	97.84
KOG2321	703	consensus WD40 repeat protein [General function pr	97.82
KOG1334	559	consensus WD40 repeat protein [General function pr	97.7
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.69
KOG4547	541	consensus WD40 repeat-containing protein [General	97.64
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.62
KOG4547	541	consensus WD40 repeat-containing protein [General	97.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.57
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.56
COG4946	668	Uncharacterized protein related to the periplasmic	97.51
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.5
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.5
KOG2321	703	consensus WD40 repeat protein [General function pr	97.44
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.43
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	97.42
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.33
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.32
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.32
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	97.3
KOG2314	698	consensus Translation initiation factor 3, subunit	97.28
KOG4227	609	consensus WD40 repeat protein [General function pr	97.24
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.08
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.08
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.06
KOG2315	566	consensus Predicted translation initiation factor	97.03
PRK04043	419	tolB translocation protein TolB; Provisional	97.01
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.01
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.0
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.0
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.95
KOG0280	339	consensus Uncharacterized conserved protein [Amino	96.93
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.84
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	96.84
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.67
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.57
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.56
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.52
KOG1334	559	consensus WD40 repeat protein [General function pr	96.49
COG4946	668	Uncharacterized protein related to the periplasmic	96.42
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.36
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.33
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.21
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.19
KOG4415	247	consensus Uncharacterized conserved protein [Funct	96.18
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.04
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	95.95
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	95.84
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.53
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	95.41
KOG4714	319	consensus Nucleoporin [Nuclear structure]	95.4
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.4
KOG4532	344	consensus WD40-like repeat containing protein [Gen	95.25
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.17
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	95.08
KOG4532	344	consensus WD40-like repeat containing protein [Gen	94.8
KOG1912	1062	consensus WD40 repeat protein [General function pr	94.76
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	94.55
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.45
KOG0280	339	consensus Uncharacterized conserved protein [Amino	94.35
KOG2695	425	consensus WD40 repeat protein [General function pr	94.3
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.28
KOG2314	698	consensus Translation initiation factor 3, subunit	94.26
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	94.24
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	93.64
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	93.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	93.44
KOG2695	425	consensus WD40 repeat protein [General function pr	93.26
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.03
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.9
KOG3621	726	consensus WD40 repeat-containing protein [General	92.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	92.44
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	92.19
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	92.15
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	91.6
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.38
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	91.24
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.2
KOG2041	1189	consensus WD40 repeat protein [General function pr	90.65
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	90.58
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	90.43
PRK02888	635	nitrous-oxide reductase; Validated	89.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	89.74
KOG4714	319	consensus Nucleoporin [Nuclear structure]	89.63
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	89.43
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	89.31
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	88.53
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	88.09
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	87.53
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	86.77
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	86.69
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	86.59
KOG2395	644	consensus Protein involved in vacuole import and d	86.39
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	85.86
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	84.37
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	83.82
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	83.62
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	83.5
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	82.65
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	82.09
KOG2444	238	consensus WD40 repeat protein [General function pr	82.07
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	81.92
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	81.68
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	80.86
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	80.83
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	80.79
PRK02888	635	nitrous-oxide reductase; Validated	80.7

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.9e-59  Score=515.02  Aligned_cols=628  Identities=30%  Similarity=0.358  Sum_probs=472.3

Q ss_pred             CCchhhhhhceeeeeccCCcceeeeccccccccceecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEc
Q 004255           12 LPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDV   91 (765)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv   91 (765)
                      +|+|||+||.|+|+.|+|+.+++       .|++++.+.+.++++||++|++||+   .+...++||++++.+||||||.
T Consensus         1 ~p~s~~~vs~c~k~~ssg~~~~~-------~s~~~~~ss~~~e~~dqvlw~~fD~---~~~~~~~Vlll~~~~gfqv~d~   70 (788)
T KOG2109|consen    1 MPPSANSVSGCKKKNSSGHQRPQ-------QSHQQTQSSPLPEEEDQVLWIKFDP---KPEVLEEVLLLNREEGFQVVDE   70 (788)
T ss_pred             CCcccchhccchhhcccccccHH-------HHHHhhcCCCChhhhccccccccCC---chhHHHHHHHHhhccCceEEee
Confidence            59999999999999997777665       4577777888899999999999995   2455789999999999999999


Q ss_pred             cCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCC-cCCCCCCCCC
Q 004255           92 EDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGM-MDSQSGNCVN  170 (765)
Q Consensus        92 ~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~-~~~~~~~~~~  170 (765)
                      ++..++++..+.+|+++.+++|+++|+.+...++|++++|++|+|...   .+++     .....++|. .+.       
T Consensus        71 ~Dsp~vh~~vs~~dd~~~f~sm~~~pl~sg~~~gf~ss~avpavv~~t---~S~p-----~I~~S~~Gse~d~-------  135 (788)
T KOG2109|consen   71 TDSPTVHKEVSISDDLLDFSSMDKSPLSSGPDSGFESSDAVPAVVRTT---TSPP-----TIPPSQTGSEQDS-------  135 (788)
T ss_pred             ccCCccceeeeecCCcceecccCCCCccCCCCCccccCCceeeecccc---cCCC-----cCCCCCCcceecc-------
Confidence            999999999999999999999999999999889999999999986522   2221     011224444 221       


Q ss_pred             CCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 004255          171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (765)
Q Consensus       171 ~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~  250 (765)
                      .+....++|+++..++|.|+|+                   +|+|||+.|++..+.+.+++.|+.      ..+++|+++
T Consensus       136 t~an~~v~dl~S~~yah~l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l------~l~VGYGpl  190 (788)
T KOG2109|consen  136 TQANEMVVDLMSLDYAHALPFR-------------------QIHCFDAPTLEIDSMNTINTKPRL------LLSVGYGPL  190 (788)
T ss_pred             cccccceeccccccchhccccc-------------------ccccccCcccCCchhhcccccccc------ceeeccccc
Confidence            2356788999999999999996                   899999999999999988887743      235679999


Q ss_pred             EEccceEEEecCCceecCCccccCCCCCC-CCCCCCcCCCCCcceeeehhhhhhhhhcccc-------eeecccccccCC
Q 004255          251 AVGPRWLAYASNTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLS-------KTLSKYCQELLP  322 (765)
Q Consensus       251 Alspr~LAyas~~~~~~~~G~~s~~~lt~-~~~s~s~sp~~gslva~~a~d~~k~la~G~~-------ktls~~~~~~~p  322 (765)
                      ++++||+||++.....+.     .+..+. ..+++++++-++-.+|+||+|.+|+++.|+.       +++++||++.++
T Consensus       191 aVg~rWaaya~~~a~~vs-----s~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~  265 (788)
T KOG2109|consen  191 AVGRRWAAYAQTLANQVS-----SHLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQ  265 (788)
T ss_pred             cceeeeeeeccCcchhhh-----hccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccC
Confidence            999999999987543221     234455 6778888888888899999999999999965       688999998776


Q ss_pred             CCCCCCccCCCccccccccccccC-CCCe--EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          323 DGSSSPVSPNSVWKVGRHAGADMD-NAGI--VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~~~~-~dG~--V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                      .+......-......+....+++. .-|+  +.+-|+.+...+.+|++|+++|++|+|+++|.+|++++..|+.|++|.+
T Consensus       266 ~g~gpglgg~~~~~vGrvg~vsaesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi  345 (788)
T KOG2109|consen  266 IGTGPGLGGFEEVLVGRVGPVSAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI  345 (788)
T ss_pred             CCCCCCCCCcCceeccccccccceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEe
Confidence            543322221111111111112222 2455  8888999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCCCCCC
Q 004255          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDP  479 (765)
Q Consensus       400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~~  479 (765)
                      ++..+....+.++++|+         .||.+.+.|++|+|+.+.+|++.+|.+|+=                       |
T Consensus       346 met~~t~~~~~qs~~~s---------~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------------------P  393 (788)
T KOG2109|consen  346 METVCTVNVSDQSLVVS---------PRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------------------P  393 (788)
T ss_pred             ccccccccccccccccc---------hhcchHHHHHHHhhhhhcceEeecccCCCC-----------------------c
Confidence            88644333333332221         478888899999999999999999955542                       4


Q ss_pred             ccccccCCCcccCCCCCccCCcCCCCCCeeeeeeeeeeeCCCCcccccccccccccCccccccceeeeecccCccccccc
Q 004255          480 YLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQH  559 (765)
Q Consensus       480 ~~~p~~~l~~~~~s~~~~~q~~~~~~~~~~l~~~~~i~~~~~~w~~~~~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~  559 (765)
                      .+.+...+|||-.+++...-+..+.+.+.+|...++++..+.    |   ++++-.++.-.|...-..+|+.......  
T Consensus       394 ~ls~t~~lp~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s----~---~asSv~s~s~~pd~ks~gv~~gsv~k~~--  464 (788)
T KOG2109|consen  394 ALSLTCQLPAYADTSLDLGLQSSGGLAAEGLATSSAGYTAHS----Y---TASSVFSRSVKPDSKSVGVGSGSVTKAN--  464 (788)
T ss_pred             ccccccccchhhchhhhccccccCcccceeeeeccccccccc----c---ccceeeccccccchhhccceeeeccccC--
Confidence            566777899999999988777778788888888887776532    1   1222223334566666777877643211  


Q ss_pred             cccccCccccEEEEcCCc-cEEEEecccCCCCCCCCC-CCcccccccccccCCc-eeEeeccccceeeeccCCCcccccc
Q 004255          560 VNSRTNSLEHLLVYTPSG-YVVQHELLPSIGMGPSDD-GSRIRAASLMCLQEDD-LQVRVEPVQWWDVCRRSDWPEREEF  636 (765)
Q Consensus       560 ~~~~~~~~~~Llv~s~~G-~l~~y~l~p~~g~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~w~~~r~~~~~e~~~~  636 (765)
                       ...+..+..|||+.|.| +++||-|.+.+++.-.+. ....+-.+ +...+++ .++.|+|.+.|+.|++-+|+|++++
T Consensus       465 -q~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lS-ad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r  542 (788)
T KOG2109|consen  465 -QGVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLS-ADANENEFNIFLVMPHATWSSLAAVQHLYKLNR  542 (788)
T ss_pred             -ccchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceec-ccccccccceEEeecccccHHHhhhhhhhhccC
Confidence             13345588899999999 999999999998765544 33333332 3445677 9999999999999999999999997


Q ss_pred             ccccccCCCCceeeecccccCCCCCCCcccccccceecccccccCCCCccccceeEeeeeeEEeccCCccccccceeEEE
Q 004255          637 ISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFF  716 (765)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~~~~w~~~~~~f~  716 (765)
                        |.|..     +.+ .....++....-   +        +. +...+.-+.+|-|+-++|+++|.. +|||+|.+ .||
T Consensus       543 --G~Tsa-----Kv~-~~afs~dsrw~A---~--------~t-~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFh  600 (788)
T KOG2109|consen  543 --GSTSA-----KVV-STAFSEDSRWLA---I--------TT-NHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFH  600 (788)
T ss_pred             --CCccc-----eee-eeEeecchhhhh---h--------hh-cCCceeeeeeccccccccceecCC-chhccchh-hhc
Confidence              44333     111 111111100000   0        00 124567789999999999999999 99999999 999


Q ss_pred             EcCCccc------cCCCCCceEEEEeeceeeeeeccCccccccccccccc
Q 004255          717 KMDSPRA------NTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKP  760 (765)
Q Consensus       717 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  760 (765)
                      -|...+.      +...++|.||+++.++++|+|+|||+|+++ .++.++
T Consensus       601 rsagl~~d~~~~~s~ggg~e~ei~~~~~~t~e~r~~dllPvy~-~tS~rs  649 (788)
T KOG2109|consen  601 RSAGLTDDADVTASIGGGKEREIADSCSYTKEHRIADLLPVYA-KTSGRS  649 (788)
T ss_pred             cccCCCccccccccCCCCccceecccccccccccccccCCccc-ccCccc
Confidence            9998543      455667999999999999999999999999 455444

>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length

Probab=100.00  E-value=2.2e-54  Score=452.24  Aligned_cols=238  Identities=47%  Similarity=0.744  Sum_probs=202.6

Q ss_pred             CCCeeeeeeeeeeeCC-CCcccccccccccccC-ccccccceeeeecccCccccccccccc-cCccccEEEEcCCccEEE
Q 004255          505 PPPVTLSVVSRIKYSS-FGWLNTVSNASASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSR-TNSLEHLLVYTPSGYVVQ  581 (765)
Q Consensus       505 ~~~~~l~~~~~i~~~~-~~w~~~~~~~~~~a~~-~~~~p~~~v~~~f~~~~~~~~~~~~~~-~~~~~~Llv~s~~G~l~~  581 (765)
                      |+|++|+||+|||+++ +||+|+++++++++++ +.+.+++++|+.||++......+...+ ...+++|||++|+|+|+|
T Consensus         1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq   80 (251)
T PF12490_consen    1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ   80 (251)
T ss_pred             CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence            6799999999999998 8999999999999888 889999999999999866555544343 688999999999999999


Q ss_pred             EecccCCCCCCCCCCCcccccccccccCCceeEeeccccceeeeccCCCccccc-cccccccCCCCceeeecccccCCC-
Q 004255          582 HELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREE-FISEATCDGHGAVEIFQNKSDCED-  659 (765)
Q Consensus       582 y~l~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~r~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~-  659 (765)
                      |+|+|+.+++....+++.+++....++|++|||+|||+|||||||+.+|+||++ ++.+...+++....   .++++++ 
T Consensus        81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~---~~~~~~~~  157 (251)
T PF12490_consen   81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSA---SKIDPSDC  157 (251)
T ss_pred             EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhh---hhcccccc
Confidence            999999999988888888888766667799999999999999999999999999 55544344443322   2444444 


Q ss_pred             CCCCcccccccceecccccccCCCCccccceeEeeeeeEEeccCC-ccccccceeEEEEcCCccc-----cCCCC--Cce
Q 004255          660 NYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRA-----NTHAS--GEF  731 (765)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~-~~~w~~~~~~f~~~~~~~~-----~~~~~--~~~  731 (765)
                      .++++.++++.+.+.+.     +++++|++||||||||||||+++ +||||||||+||+|.++..     ++..+  |||
T Consensus       158 ~~~~~~~~~~~~~~~~~-----~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~  232 (251)
T PF12490_consen  158 RKGNSVNPSNDSYVSKE-----SDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEI  232 (251)
T ss_pred             cccCCcccccccccccc-----CCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCce
Confidence            34677788877666555     78899999999999999999999 8999999999999998652     45566  999


Q ss_pred             EEEEeeceeeeeeccCccc
Q 004255          732 EIEKVSVHEVEIKRKELLP  750 (765)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~p  750 (765)
                      ||||||+|+||+|||||||
T Consensus       233 EIE~~~~~~ve~r~k~l~p  251 (251)
T PF12490_consen  233 EIEKIPTREVEIRRKDLLP  251 (251)
T ss_pred             eeccccccceeeeccccCC
Confidence            9999999999999999998

The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=7.1e-48  Score=404.57  Aligned_cols=325  Identities=27%  Similarity=0.439  Sum_probs=278.7

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL  132 (765)
                      ++.+..+.+.+|++       +..+|.+|..+|+++|.+++.+   +..+...+.+.+|+||           |+++  |
T Consensus         2 ~~~~~ti~~~~~Nq-------d~~~lsvGs~~Gyk~~~~~~~~---k~~~~~~~~~~IvEmL-----------FSSS--L   58 (391)
T KOG2110|consen    2 NGKKPTINFIGFNQ-------DSTLLSVGSKDGYKIFSCSPFE---KCFSKDTEGVSIVEML-----------FSSS--L   58 (391)
T ss_pred             CCCCcceeeeeecc-------ceeEEEccCCCceeEEecCchH---HhhcccCCCeEEEEee-----------cccc--e
Confidence            45678899999998       3679999999999999998754   4566666889999999           9998  9


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEeCCe
Q 004255          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQ  212 (765)
Q Consensus       133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~~~~  212 (765)
                      ||+|..+                               .|++++++++|.+..||.+.|+++|++|++|+++|+|+++++
T Consensus        59 vaiV~~~-------------------------------qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~  107 (391)
T KOG2110|consen   59 VAIVSIK-------------------------------QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES  107 (391)
T ss_pred             eEEEecC-------------------------------CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc
Confidence            9987652                               258999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeEEEEec-CCcccCCCCccccccccceeEEcc----ceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255          213 IYCFDALTLENKFSVLTY-PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (765)
Q Consensus       213 I~iwD~~t~~~l~tl~t~-p~p~~~~~~~~~~~~~~~~~Alsp----r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s  287 (765)
                      |||||+.+|+.+++|.+. |+|             .+.+|+++    .||||+++.                        
T Consensus       108 IyIydI~~MklLhTI~t~~~n~-------------~gl~AlS~n~~n~ylAyp~s~------------------------  150 (391)
T KOG2110|consen  108 IYIYDIKDMKLLHTIETTPPNP-------------KGLCALSPNNANCYLAYPGST------------------------  150 (391)
T ss_pred             EEEEecccceeehhhhccCCCc-------------cceEeeccCCCCceEEecCCC------------------------
Confidence            999999999999999976 564             46788887    588888631                        


Q ss_pred             CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA  367 (765)
Q Consensus       288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a  367 (765)
                                                                                 ..|.|+|||+.+.+.+..|.+
T Consensus       151 -----------------------------------------------------------t~GdV~l~d~~nl~~v~~I~a  171 (391)
T KOG2110|consen  151 -----------------------------------------------------------TSGDVVLFDTINLQPVNTINA  171 (391)
T ss_pred             -----------------------------------------------------------CCceEEEEEcccceeeeEEEe
Confidence                                                                       257899999999999999999


Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 004255          368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA  447 (765)
Q Consensus       368 H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La  447 (765)
                      |.++|.||+||++|++|||||++|++||||.+..       |          +++|+||||.....|++|+||||+++|+
T Consensus       172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------G----------~kl~eFRRG~~~~~IySL~Fs~ds~~L~  234 (391)
T KOG2110|consen  172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------G----------QKLYEFRRGTYPVSIYSLSFSPDSQFLA  234 (391)
T ss_pred             cCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-------c----------cEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence            9999999999999999999999999999999954       5          6999999999878999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCCCCcccccccCCCCCCccccccCCCcccCCCCCccCCcCCCCCCeeeeeeeeeeeCCCCccccc
Q 004255          448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTV  527 (765)
Q Consensus       448 s~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~~~~~p~~~l~~~~~s~~~~~q~~~~~~~~~~l~~~~~i~~~~~~w~~~~  527 (765)
                      ++|+.+|||||.|+......                                  ...|.            ...+|.+.+
T Consensus       235 ~sS~TeTVHiFKL~~~~~~~----------------------------------~~~p~------------~~~~~~~~~  268 (391)
T KOG2110|consen  235 ASSNTETVHIFKLEKVSNNP----------------------------------PESPT------------AGTSWFGKV  268 (391)
T ss_pred             EecCCCeEEEEEecccccCC----------------------------------CCCCC------------CCCcccchh
Confidence            99999999999998642100                                  00111            124688888


Q ss_pred             ccccccccCccccccceeeeecccCcc--ccccc--------cccccCccccEEEEcCCccEEEEecccCCCCCCCCCC
Q 004255          528 SNASASSMGKVFVPSGAVAAVFHNSIA--HSSQH--------VNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDG  596 (765)
Q Consensus       528 ~~~~~~a~~~~~~p~~~v~~~f~~~~~--~~~~~--------~~~~~~~~~~Llv~s~~G~l~~y~l~p~~g~~~~~~~  596 (765)
                      ++++.+     |+|++ |+.+++++|.  +++++        .+..+++.++++|++.|||+|.|+|+|++||||.+..
T Consensus       269 sk~~~s-----ylps~-V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik  341 (391)
T KOG2110|consen  269 SKAATS-----YLPSQ-VSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIK  341 (391)
T ss_pred             hhhhhh-----hcchh-hhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEE
Confidence            776666     99999 9999999987  44444        3557789999999999999999999999999999765

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=5.4e-37  Score=317.66  Aligned_cols=315  Identities=25%  Similarity=0.328  Sum_probs=251.9

Q ss_pred             cEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccccCCEEEE
Q 004255           58 QVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLV  135 (765)
Q Consensus        58 ~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells--~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLav  135 (765)
                      +.+=+.|++    |   ..++++|.++||+||++++   +.|..+  .+++.+..++||           |+.+  +||+
T Consensus         7 ~~lsvs~NQ----D---~ScFava~~~Gfriyn~~P---~ke~~~r~~~~~G~~~veML-----------fR~N--~laL   63 (346)
T KOG2111|consen    7 KTLSVSFNQ----D---HSCFAVATDTGFRIYNCDP---FKESASRQFIDGGFKIVEML-----------FRSN--YLAL   63 (346)
T ss_pred             ceeEEEEcc----C---CceEEEEecCceEEEecCc---hhhhhhhccccCchhhhhHh-----------hhhc--eEEE
Confidence            344488998    3   5699999999999999987   444333  345669999999           9998  9999


Q ss_pred             EEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEeCCeEEE
Q 004255          136 VAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYC  215 (765)
Q Consensus       136 v~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~~~~I~i  215 (765)
                      |.|+.                          ++-++|++|.|||.....++.++.|.++|.+|++.++.|+|.++++|++
T Consensus        64 VGGg~--------------------------~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~V  117 (346)
T KOG2111|consen   64 VGGGS--------------------------RPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYV  117 (346)
T ss_pred             ecCCC--------------------------CCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEE
Confidence            87532                          1245789999999999999999999999999999999999999999999


Q ss_pred             EECC-CCceeEEEEecCCcccCCCCccccccccceeEEcc----ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCC
Q 004255          216 FDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG  290 (765)
Q Consensus       216 wD~~-t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp----r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~  290 (765)
                      |.-. +.+.++.+.+.++|             .|.+++.|    .+|||++.                            
T Consensus       118 ytF~~n~k~l~~~et~~NP-------------kGlC~~~~~~~k~~LafPg~----------------------------  156 (346)
T KOG2111|consen  118 YTFPDNPKLLHVIETRSNP-------------KGLCSLCPTSNKSLLAFPGF----------------------------  156 (346)
T ss_pred             EEcCCChhheeeeecccCC-------------CceEeecCCCCceEEEcCCC----------------------------
Confidence            9976 78899999988876             25566655    44555442                            


Q ss_pred             CcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE--EEEeccC
Q 004255          291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAH  368 (765)
Q Consensus       291 gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~--i~~~~aH  368 (765)
                                                                              ..|.|+|-|+...+.  ...+.||
T Consensus       157 --------------------------------------------------------k~GqvQi~dL~~~~~~~p~~I~AH  180 (346)
T KOG2111|consen  157 --------------------------------------------------------KTGQVQIVDLASTKPNAPSIINAH  180 (346)
T ss_pred             --------------------------------------------------------ccceEEEEEhhhcCcCCceEEEcc
Confidence                                                                    346788888876554  4678999


Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI  448 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las  448 (765)
                      .+.|.|++++-+|++|||||.+|+.|||||..+       |          .++++||||...+.|++|+||||+.|||+
T Consensus       181 ~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-------g----------~~l~E~RRG~d~A~iy~iaFSp~~s~Lav  243 (346)
T KOG2111|consen  181 DSDIACVALNLQGTLVATASTKGTLIRIFDTED-------G----------TLLQELRRGVDRADIYCIAFSPNSSWLAV  243 (346)
T ss_pred             cCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-------C----------cEeeeeecCCchheEEEEEeCCCccEEEE
Confidence            999999999999999999999999999999876       5          69999999999999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCCcccccccCCCCCCccccc-cCCCcccCCCCCccCCcCCCCCCeeeeeeeeeeeCCCCccccc
Q 004255          449 VSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV-LSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTV  527 (765)
Q Consensus       449 ~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~~~~~p~-~~l~~~~~s~~~~~q~~~~~~~~~~l~~~~~i~~~~~~w~~~~  527 (765)
                      +|++||+|||.+....  .+.+.|+      .++.. ..||.|+.|+|+++|+.+|..+                     
T Consensus       244 sSdKgTlHiF~l~~~~--~~~~~~S------Sl~~~~~~lpky~~S~wS~~~f~l~~~~---------------------  294 (346)
T KOG2111|consen  244 SSDKGTLHIFSLRDTE--NTEDESS------SLSFKRLVLPKYFSSEWSFAKFQLPQGT---------------------  294 (346)
T ss_pred             EcCCCeEEEEEeecCC--CCccccc------cccccccccchhcccceeEEEEEccCCC---------------------
Confidence            9999999999997632  1222332      22222 4689999999999987776322                     


Q ss_pred             ccccccccCccccccceeeeecccCccccccccccccCccccEEEEcCCccEEEEecccCCCCCCCC
Q 004255          528 SNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSD  594 (765)
Q Consensus       528 ~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~~~~~~~~~~Llv~s~~G~l~~y~l~p~~g~~~~~  594 (765)
                                     . +..-|.+.              ...+++.+-||.-+.|.++|.+||+|..
T Consensus       295 ---------------~-~~~~fg~~--------------~nsvi~i~~Dgsy~k~~f~~~~~g~~~~  331 (346)
T KOG2111|consen  295 ---------------Q-CIIAFGSE--------------TNTVIAICADGSYYKFKFDPKNGGESSR  331 (346)
T ss_pred             ---------------c-EEEEecCC--------------CCeEEEEEeCCcEEEEEeccccccchhh
Confidence                           1 22223322              1357888999999999999999999974

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.8e-24  Score=228.56  Aligned_cols=315  Identities=14%  Similarity=0.129  Sum_probs=218.1

Q ss_pred             CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        51 ~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..++|-+.|+.+.|-.       .+..|++|..+ .+++||++ +.....++.+|..+|-+|++.|+.           +
T Consensus       110 S~~GH~e~Vl~~~fsp-------~g~~l~tGsGD~TvR~WD~~-TeTp~~t~KgH~~WVlcvawsPDg-----------k  170 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSP-------TGSRLVTGSGDTTVRLWDLD-TETPLFTCKGHKNWVLCVAWSPDG-----------K  170 (480)
T ss_pred             ccCCCCCcEEEEEecC-------CCceEEecCCCceEEeeccC-CCCcceeecCCccEEEEEEECCCc-----------c
Confidence            3677899999999954       46789999876 59999995 566788999999999999999973           2


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE-EEEeCC-CCEEEEEecC-----
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE-HVLRFR-SSVCMVRCSP-----  202 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v-~tL~~~-s~V~sV~~s~-----  202 (765)
                        .||.  |.                               .+++|++||.++|+++ ..|..| -.|.++++-|     
T Consensus       171 --~iAS--G~-------------------------------~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p  215 (480)
T KOG0271|consen  171 --KIAS--GS-------------------------------KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP  215 (480)
T ss_pred             --hhhc--cc-------------------------------cCCeEEEecCCCCCcccccccCcccceeEEeecccccCC
Confidence              4554  21                               2478999999998765 567765 4899999865     


Q ss_pred             --CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCCccccCCCCC
Q 004255          203 --RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLT  278 (765)
Q Consensus       203 --~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~~~G~~s~~~lt  278 (765)
                        ++||.+. |+.|+|||+.-+++++++.+|+++             +..+-.|. -||++++.+.-+     ..|+...
T Consensus       216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~-------------VTCvrwGG~gliySgS~DrtI-----kvw~a~d  277 (480)
T KOG0271|consen  216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS-------------VTCVRWGGEGLIYSGSQDRTI-----KVWRALD  277 (480)
T ss_pred             CccceecccCCCCEEEEEccCceEEEEeccCccc-------------eEEEEEcCCceEEecCCCceE-----EEEEccc
Confidence              6788766 567999999999999999999985             35566665 566666654211     1122111


Q ss_pred             CCCCCCCcCCCCCcceeeehhhhhhhhhcccc---------------eeecccccccCCCCCCCCccCCCcccccccccc
Q 004255          279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS---------------KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA  343 (765)
Q Consensus       279 ~~~~s~s~sp~~gslva~~a~d~~k~la~G~~---------------ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~  343 (765)
                      ...+.  ...+-+..|.++|...-..+-.|..               +.+.+|-.- ..+              .+--++
T Consensus       278 G~~~r--~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~-~~~--------------~~erlV  340 (480)
T KOG0271|consen  278 GKLCR--ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV-LKD--------------SGERLV  340 (480)
T ss_pred             hhHHH--hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh-hcc--------------CcceeE
Confidence            00000  0000000011111110000111110               112222110 000              001245


Q ss_pred             ccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          344 DMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       344 ~~~~dG~V~IwDl~-s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      ++..|+++.+|+-. +.+++..+.+|..-|+.+.|||||+++|+||. |+.||+||-.+       |          +.+
T Consensus       341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF-DkSVkLW~g~t-------G----------k~l  402 (480)
T KOG0271|consen  341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF-DKSVKLWDGRT-------G----------KFL  402 (480)
T ss_pred             EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec-ccceeeeeCCC-------c----------chh
Confidence            78899999999964 45688899999999999999999999999999 56799999865       4          456


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccC
Q 004255          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS  474 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~  474 (765)
                      ..| ||+ -+.|+.|+||.|++.|+++|.|.|++||++.+.+-..++.+|..
T Consensus       403 asf-RGH-v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D  452 (480)
T KOG0271|consen  403 ASF-RGH-VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD  452 (480)
T ss_pred             hhh-hhc-cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence            666 564 46799999999999999999999999999999888888888854

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.91  E-value=2.1e-23  Score=237.01  Aligned_cols=228  Identities=20%  Similarity=0.273  Sum_probs=175.9

Q ss_pred             CCeEEEEEecCc-EEEEEccCC------------------------------CcceEeeeeccCCEEEEEEecCCCCCCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDA------------------------------SNFNELVSKRDGPVSFLQMQPFPVKDDG  122 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~------------------------------g~~~ells~~dg~V~~v~~lP~p~~~~~  122 (765)
                      +.+.|+.|..+- ++||.+.+.                              +...+.+-+|.|||..+.|.|+      
T Consensus       389 dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd------  462 (707)
T KOG0263|consen  389 DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD------  462 (707)
T ss_pred             CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc------
Confidence            456899998875 899998731                              1233457788999999998874      


Q ss_pred             CCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEec
Q 004255          123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCS  201 (765)
Q Consensus       123 ~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s  201 (765)
                             +.+|+.++.                                 +.+||+|++.+..++..++.| .+|++|+|+
T Consensus       463 -------~rfLlScSE---------------------------------D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~  502 (707)
T KOG0263|consen  463 -------RRFLLSCSE---------------------------------DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA  502 (707)
T ss_pred             -------ccceeeccC---------------------------------CcceeeeecccceeEEEecCCCcceeeEEec
Confidence                   346654221                                 368999999999999999977 499999999


Q ss_pred             CC--eEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCC
Q 004255          202 PR--IVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQN  276 (765)
Q Consensus       202 ~~--~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~  276 (765)
                      |+  ++|++.+ .+-++|.....+.++.+.+|-+             .+++++|.|  .|+                   
T Consensus       503 P~GyYFatas~D~tArLWs~d~~~PlRifaghls-------------DV~cv~FHPNs~Y~-------------------  550 (707)
T KOG0263|consen  503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS-------------DVDCVSFHPNSNYV-------------------  550 (707)
T ss_pred             CCceEEEecCCCceeeeeecccCCchhhhccccc-------------ccceEEECCccccc-------------------
Confidence            93  6777654 4689998777665555555433             123455544  222                   


Q ss_pred             CCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255          277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF  356 (765)
Q Consensus       277 lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl  356 (765)
                                                                                        ++++.|.+||+||+
T Consensus       551 ------------------------------------------------------------------aTGSsD~tVRlWDv  564 (707)
T KOG0263|consen  551 ------------------------------------------------------------------ATGSSDRTVRLWDV  564 (707)
T ss_pred             ------------------------------------------------------------------ccCCCCceEEEEEc
Confidence                                                                              23456889999999


Q ss_pred             CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 004255          357 VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD  436 (765)
Q Consensus       357 ~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~s  436 (765)
                      .+|..+..|.||+++|.+|+|||+|++||+|+.|| .|+|||+..       |          ..+..+ +|+ .+.|++
T Consensus       565 ~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~-~I~iWDl~~-------~----------~~v~~l-~~H-t~ti~S  624 (707)
T KOG0263|consen  565 STGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG-LIKIWDLAN-------G----------SLVKQL-KGH-TGTIYS  624 (707)
T ss_pred             CCCcEEEEecCCCCceEEEEEcCCCceEeecccCC-cEEEEEcCC-------C----------cchhhh-hcc-cCceeE
Confidence            99999999999999999999999999999999976 599999954       3          344444 465 568999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          437 ICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       437 laFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      |.||.||..||+++.|.+|++||+...-+
T Consensus       625 lsFS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  625 LSFSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence            99999999999999999999999976433

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=2.6e-23  Score=222.33  Aligned_cols=255  Identities=16%  Similarity=0.180  Sum_probs=201.1

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL  132 (765)
                      ++.-.|..+.|-.       +...|++|+.+| .+||.+.. .+...+|.+|.+.|..+.|.|.-           +.--
T Consensus       173 gd~rPis~~~fS~-------ds~~laT~swsG~~kvW~~~~-~~~~~~l~gH~~~v~~~~fhP~~-----------~~~~  233 (459)
T KOG0272|consen  173 GDTRPISGCSFSR-------DSKHLATGSWSGLVKVWSVPQ-CNLLQTLRGHTSRVGAAVFHPVD-----------SDLN  233 (459)
T ss_pred             cCCCcceeeEeec-------CCCeEEEeecCCceeEeecCC-cceeEEEeccccceeeEEEccCC-----------Cccc
Confidence            3455677777754       467999999998 79999964 57888999999999999999841           1113


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEE-
Q 004255          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-  208 (765)
Q Consensus       133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~-  208 (765)
                      ||.++                                 .+++|++|++.+.+.+..|+.| ..|-.|+|+|  ++|+++ 
T Consensus       234 lat~s---------------------------------~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tas  280 (459)
T KOG0272|consen  234 LATAS---------------------------------ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTAS  280 (459)
T ss_pred             eeeec---------------------------------cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecc
Confidence            45432                                 2479999999998999999876 5999999998  788875 


Q ss_pred             eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255          209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (765)
Q Consensus       209 ~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp  288 (765)
                      +|.+=++||+.|.+.+.-..+|..+             +-.++|.+       +                          
T Consensus       281 fD~tWRlWD~~tk~ElL~QEGHs~~-------------v~~iaf~~-------D--------------------------  314 (459)
T KOG0272|consen  281 FDSTWRLWDLETKSELLLQEGHSKG-------------VFSIAFQP-------D--------------------------  314 (459)
T ss_pred             cccchhhcccccchhhHhhcccccc-------------cceeEecC-------C--------------------------
Confidence            4667999999999888777777652             12233311       1                          


Q ss_pred             CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH  368 (765)
Q Consensus       289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH  368 (765)
                        |+|++                                                +++.|..-+|||+++++++..|.+|
T Consensus       315 --GSL~~------------------------------------------------tGGlD~~~RvWDlRtgr~im~L~gH  344 (459)
T KOG0272|consen  315 --GSLAA------------------------------------------------TGGLDSLGRVWDLRTGRCIMFLAGH  344 (459)
T ss_pred             --Cceee------------------------------------------------ccCccchhheeecccCcEEEEeccc
Confidence              22221                                                3456778899999999999999999


Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEE
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIA  447 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~La  447 (765)
                      ..+|..|+|||+|..|||||.|+ ++||||++-.                 ..+|.+- + |...|..+.|+| -|++|+
T Consensus       345 ~k~I~~V~fsPNGy~lATgs~Dn-t~kVWDLR~r-----------------~~ly~ip-A-H~nlVS~Vk~~p~~g~fL~  404 (459)
T KOG0272|consen  345 IKEILSVAFSPNGYHLATGSSDN-TCKVWDLRMR-----------------SELYTIP-A-HSNLVSQVKYSPQEGYFLV  404 (459)
T ss_pred             ccceeeEeECCCceEEeecCCCC-cEEEeeeccc-----------------ccceecc-c-ccchhhheEecccCCeEEE
Confidence            99999999999999999999966 5999999641                 3567664 3 345799999999 679999


Q ss_pred             EEeCCCcEEEEeCCCCCCCcccccccCCC
Q 004255          448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQG  476 (765)
Q Consensus       448 s~S~dgTVhIwdl~~~gg~~~~~~h~~~~  476 (765)
                      ++|.|+|++||.-........+.+|..++
T Consensus       405 TasyD~t~kiWs~~~~~~~ksLaGHe~kV  433 (459)
T KOG0272|consen  405 TASYDNTVKIWSTRTWSPLKSLAGHEGKV  433 (459)
T ss_pred             EcccCcceeeecCCCcccchhhcCCccce
Confidence            99999999999988888888889997654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2.7e-22  Score=212.14  Aligned_cols=291  Identities=15%  Similarity=0.143  Sum_probs=201.2

Q ss_pred             CCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCC
Q 004255           71 PSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN  149 (765)
Q Consensus        71 ~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~  149 (765)
                      .+.+++.|++|..+| |.+||-...+..-+.|.+|..+|..+++-|--...       ..| +||..+            
T Consensus       165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p-------~~r-~las~s------------  224 (480)
T KOG0271|consen  165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP-------PCR-RLASSS------------  224 (480)
T ss_pred             ECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC-------Ccc-ceeccc------------
Confidence            345789999999987 99999876667778999999999999998753211       122 454411            


Q ss_pred             cCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC-CeEEEEeC-CeEEEEECCCCceeEE
Q 004255          150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVGLA-TQIYCFDALTLENKFS  226 (765)
Q Consensus       150 ~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-~~LaV~~~-~~I~iwD~~t~~~l~t  226 (765)
                                           .++.|+|||++.+.++..+..| .+|.+|+.-. .+|..+.. .+|++|++.++++.++
T Consensus       225 ---------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~  283 (480)
T KOG0271|consen  225 ---------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRE  283 (480)
T ss_pred             ---------------------CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHh
Confidence                                 2468999999999999999876 5999999986 78888764 5799999999999999


Q ss_pred             EEecCCcccCCCCccccccccceeEEccceEEE-ecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh---hhh
Q 004255          227 VLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAY-ASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM---EHS  302 (765)
Q Consensus       227 l~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAy-as~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~---d~~  302 (765)
                      |++|...             .+.+|++..|.-= +..+    +.|+...          +++-.-..-..+|-.   +..
T Consensus       284 lkGHahw-------------vN~lalsTdy~LRtgaf~----~t~~~~~----------~~se~~~~Al~rY~~~~~~~~  336 (480)
T KOG0271|consen  284 LKGHAHW-------------VNHLALSTDYVLRTGAFD----HTGRKPK----------SFSEEQKKALERYEAVLKDSG  336 (480)
T ss_pred             hcccchh-------------eeeeeccchhhhhccccc----cccccCC----------ChHHHHHHHHHHHHHhhccCc
Confidence            9988763             3567776532211 1000    0111100          000000000000000   000


Q ss_pred             hhhhccc-------c---------eeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255          303 KQFAAGL-------S---------KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (765)
Q Consensus       303 k~la~G~-------~---------ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~  366 (765)
                      ..+.+|.       +         ..+++|.+      -.+..+++|+.+.    +++++.|..|++||-.+|+-+.+|+
T Consensus       337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~------lVn~V~fSPd~r~----IASaSFDkSVkLW~g~tGk~lasfR  406 (480)
T KOG0271|consen  337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA------LVNHVSFSPDGRY----IASASFDKSVKLWDGRTGKFLASFR  406 (480)
T ss_pred             ceeEEecCCceEEEecccccccchhhhhchhh------heeeEEECCCccE----EEEeecccceeeeeCCCcchhhhhh
Confidence            0111110       0         01122221      1344566777665    5578899999999999999999999


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (765)
Q Consensus       367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (765)
                      +|-.+|+.++|+.|.++|+++|. |++++|||+++-                 ...++| -|+ ...|+++.|||||+.+
T Consensus       407 GHv~~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tk-----------------Kl~~DL-pGh-~DEVf~vDwspDG~rV  466 (480)
T KOG0271|consen  407 GHVAAVYQVAWSADSRLLVSGSK-DSTLKVWDVRTK-----------------KLKQDL-PGH-ADEVFAVDWSPDGQRV  466 (480)
T ss_pred             hccceeEEEEeccCccEEEEcCC-CceEEEEEeeee-----------------eecccC-CCC-CceEEEEEecCCCcee
Confidence            99999999999999999999999 567999999651                 233444 353 4579999999999999


Q ss_pred             EEEeCCCcEEEEe
Q 004255          447 AIVSSKGTCHVFV  459 (765)
Q Consensus       447 as~S~dgTVhIwd  459 (765)
                      |+|+.|..++||.
T Consensus       467 ~sggkdkv~~lw~  479 (480)
T KOG0271|consen  467 ASGGKDKVLRLWR  479 (480)
T ss_pred             ecCCCceEEEeec
Confidence            9999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.89  E-value=2e-21  Score=196.32  Aligned_cols=264  Identities=19%  Similarity=0.225  Sum_probs=178.6

Q ss_pred             EEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEc-----CCCCCCC--C---
Q 004255           77 VLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAG-----EDTNTLA--P---  146 (765)
Q Consensus        77 vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~-----d~~~~~~--~---  146 (765)
                      +...||+..||+|.. .+|.|..++...|+.|..+++.|+..             +||+.+-     -+..+..  |   
T Consensus        13 LvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~-------------~LAaa~~qhvRlyD~~S~np~Pv~t   78 (311)
T KOG0315|consen   13 LVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKK-------------DLAAAGNQHVRLYDLNSNNPNPVAT   78 (311)
T ss_pred             EEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcc-------------hhhhccCCeeEEEEccCCCCCceeE
Confidence            344577889999999 57999999999999999999998531             2222110     0000000  0   


Q ss_pred             ----CCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-CCeEEEEECC
Q 004255          147 ----GQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDAL  219 (765)
Q Consensus       147 ----~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~  219 (765)
                          ..+....|+-.+|.|.-.++    -++++||||++.-.+-+.+++.++|..|..+|  .-|++|. .+.|++||+.
T Consensus        79 ~e~h~kNVtaVgF~~dgrWMyTgs----eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   79 FEGHTKNVTAVGFQCDGRWMYTGS----EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG  154 (311)
T ss_pred             EeccCCceEEEEEeecCeEEEecC----CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence                01111223337888873222    26899999999988888999999999999988  3566665 4579999998


Q ss_pred             CCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255          220 TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM  299 (765)
Q Consensus       220 t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~  299 (765)
                      +-.+-+.+.  |.+          .....++++.|       +                            |+       
T Consensus       155 ~~~c~~~li--Pe~----------~~~i~sl~v~~-------d----------------------------gs-------  180 (311)
T KOG0315|consen  155 ENSCTHELI--PED----------DTSIQSLTVMP-------D----------------------------GS-------  180 (311)
T ss_pred             CCccccccC--CCC----------CcceeeEEEcC-------C----------------------------Cc-------
Confidence            754433221  111          00111222211       1                            00       


Q ss_pred             hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC------cEEEEeccCCCCeE
Q 004255          300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------AIISQFKAHTSPIS  373 (765)
Q Consensus       300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~------~~i~~~~aH~~~Is  373 (765)
                                                           +    ++.+...|...+|++-+.      .++.+|++|..-|.
T Consensus       181 -------------------------------------m----l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il  219 (311)
T KOG0315|consen  181 -------------------------------------M----LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL  219 (311)
T ss_pred             -------------------------------------E----EEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence                                                 0    112345688889988653      46778999999999


Q ss_pred             EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 004255          374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG  453 (765)
Q Consensus       374 aLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg  453 (765)
                      .+.||||+++|||+|. +++++||++...                ...-..+. | ++..+++++||.||+||++++.|+
T Consensus       220 ~C~lSPd~k~lat~ss-dktv~iwn~~~~----------------~kle~~l~-g-h~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  220 RCLLSPDVKYLATCSS-DKTVKIWNTDDF----------------FKLELVLT-G-HQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             EEEECCCCcEEEeecC-CceEEEEecCCc----------------eeeEEEee-c-CCceEEeeeeccCccEEEecCCCC
Confidence            9999999999999999 567999998531                01111222 3 235899999999999999999999


Q ss_pred             cEEEEeCCCCCCCcccccc
Q 004255          454 TCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       454 TVhIwdl~~~gg~~~~~~h  472 (765)
                      ++|+|++...+......+|
T Consensus       281 ~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  281 TARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             ceeecccccCceeeecCCc
Confidence            9999999886655555566

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=1.5e-21  Score=208.93  Aligned_cols=240  Identities=19%  Similarity=0.153  Sum_probs=189.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      +-+|+++|.-+-|-..+     ....|++|..+| +++|+++. ......|.+|...|..|+|-|+             +
T Consensus       213 l~gH~~~v~~~~fhP~~-----~~~~lat~s~Dgtvklw~~~~-e~~l~~l~gH~~RVs~VafHPs-------------G  273 (459)
T KOG0272|consen  213 LRGHTSRVGAAVFHPVD-----SDLNLATASADGTVKLWKLSQ-ETPLQDLEGHLARVSRVAFHPS-------------G  273 (459)
T ss_pred             EeccccceeeEEEccCC-----CccceeeeccCCceeeeccCC-CcchhhhhcchhhheeeeecCC-------------C
Confidence            56789999988886532     245788888776 99999964 4455667788889999999875             3


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-CEEEEEecC--CeEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAV  207 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~~LaV  207 (765)
                      .+|+..+-                                 +.+-++||+.+++++...+.|+ .|++|+|++  .++++
T Consensus       274 ~~L~Tasf---------------------------------D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t  320 (459)
T KOG0272|consen  274 KFLGTASF---------------------------------DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAAT  320 (459)
T ss_pred             ceeeeccc---------------------------------ccchhhcccccchhhHhhcccccccceeEecCCCceeec
Confidence            36765321                                 3678999999999998888876 899999987  56666


Q ss_pred             E-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          208 G-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       208 ~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                      | +|..-+|||++|++++..|.+|..+             .-.++|+|+                               
T Consensus       321 GGlD~~~RvWDlRtgr~im~L~gH~k~-------------I~~V~fsPN-------------------------------  356 (459)
T KOG0272|consen  321 GGLDSLGRVWDLRTGRCIMFLAGHIKE-------------ILSVAFSPN-------------------------------  356 (459)
T ss_pred             cCccchhheeecccCcEEEEecccccc-------------eeeEeECCC-------------------------------
Confidence            4 4566899999999999999887663             123444331                               


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~  366 (765)
                                                                          +..+++++.|++++|||++..+.+.++.
T Consensus       357 ----------------------------------------------------Gy~lATgs~Dnt~kVWDLR~r~~ly~ip  384 (459)
T KOG0272|consen  357 ----------------------------------------------------GYHLATGSSDNTCKVWDLRMRSELYTIP  384 (459)
T ss_pred             ----------------------------------------------------ceEEeecCCCCcEEEeeecccccceecc
Confidence                                                                1123356678999999999999999999


Q ss_pred             cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255          367 AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (765)
Q Consensus       367 aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (765)
                      +|++-|+.++|+| .|.+|+|||.|. +++||....       +          .++..|. |+. ..|.++..|+||++
T Consensus       385 AH~nlVS~Vk~~p~~g~fL~TasyD~-t~kiWs~~~-------~----------~~~ksLa-GHe-~kV~s~Dis~d~~~  444 (459)
T KOG0272|consen  385 AHSNLVSQVKYSPQEGYFLVTASYDN-TVKIWSTRT-------W----------SPLKSLA-GHE-GKVISLDISPDSQA  444 (459)
T ss_pred             cccchhhheEecccCCeEEEEcccCc-ceeeecCCC-------c----------ccchhhc-CCc-cceEEEEeccCCce
Confidence            9999999999999 899999999965 599998744       2          4566664 644 57999999999999


Q ss_pred             EEEEeCCCcEEEEe
Q 004255          446 IAIVSSKGTCHVFV  459 (765)
Q Consensus       446 Las~S~dgTVhIwd  459 (765)
                      |++++.|.|+++|.
T Consensus       445 i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  445 IATSSFDRTIKLWR  458 (459)
T ss_pred             EEEeccCceeeecc
Confidence            99999999999995

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.85  E-value=3.5e-18  Score=173.41  Aligned_cols=277  Identities=20%  Similarity=0.259  Sum_probs=192.8

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      .++++.|..+.|..       .++.|++|..+| +++||++. ++....+..|..++..+.+.|+             ..
T Consensus         6 ~~h~~~i~~~~~~~-------~~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~-------------~~   64 (289)
T cd00200           6 KGHTGGVTCVAFSP-------DGKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASAD-------------GT   64 (289)
T ss_pred             cccCCCEEEEEEcC-------CCCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCC-------------CC
Confidence            46788899888866       246777777555 99999964 5566777788888988888864             12


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG  208 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~  208 (765)
                      +|++ ++                                .++.|++||+.+++.+..+..+ ..|.++.+++  ++|+++
T Consensus        65 ~l~~-~~--------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  111 (289)
T cd00200          65 YLAS-GS--------------------------------SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS  111 (289)
T ss_pred             EEEE-Ec--------------------------------CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe
Confidence            5554 22                                1368999999998888888765 4899999988  677777


Q ss_pred             e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255          209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (765)
Q Consensus       209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s  285 (765)
                      . ++.|++||+.+++....+..+..+             ...++++|  ++|+.+..+..+     ..|+..+..     
T Consensus       112 ~~~~~i~~~~~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~~~~i-----~i~d~~~~~-----  168 (289)
T cd00200         112 SRDKTIKVWDVETGKCLTTLRGHTDW-------------VNSVAFSPDGTFVASSSQDGTI-----KLWDLRTGK-----  168 (289)
T ss_pred             cCCCeEEEEECCCcEEEEEeccCCCc-------------EEEEEEcCcCCEEEEEcCCCcE-----EEEEccccc-----
Confidence            7 778999999988887777655431             34567777  677766522110     112211100     


Q ss_pred             cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (765)
Q Consensus       286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~  365 (765)
                             .+                +.+..+      ........++++.+    .+..+..+|.|++||+.+++.+..+
T Consensus       169 -------~~----------------~~~~~~------~~~i~~~~~~~~~~----~l~~~~~~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         169 -------CV----------------ATLTGH------TGEVNSVAFSPDGE----KLLSSSSDGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             -------cc----------------eeEecC------ccccceEEECCCcC----EEEEecCCCcEEEEECCCCceecch
Confidence                   00                000000      00011111222221    1234455999999999999999999


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (765)
Q Consensus       366 ~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (765)
                      ..|..+|.+++|+|++.++++++.+|. |++||+..       +          ..+..+. + +...|.+++|++++++
T Consensus       216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~-------~----------~~~~~~~-~-~~~~i~~~~~~~~~~~  275 (289)
T cd00200         216 RGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRT-------G----------ECVQTLS-G-HTNSVTSLAWSPDGKR  275 (289)
T ss_pred             hhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCC-------c----------eeEEEcc-c-cCCcEEEEEECCCCCE
Confidence            999999999999999999999987565 99999854       2          3444554 3 3456999999999999


Q ss_pred             EEEEeCCCcEEEEe
Q 004255          446 IAIVSSKGTCHVFV  459 (765)
Q Consensus       446 Las~S~dgTVhIwd  459 (765)
                      |++++.||+++||+
T Consensus       276 l~~~~~d~~i~iw~  289 (289)
T cd00200         276 LASGSADGTIRIWD  289 (289)
T ss_pred             EEEecCCCeEEecC
Confidence            99999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.84  E-value=4.5e-19  Score=192.02  Aligned_cols=265  Identities=18%  Similarity=0.235  Sum_probs=197.4

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .+..|++|.-+| ++||+.  .|++..+|..|.|||..|++..             ....|+.  ++             
T Consensus       246 ~G~~LatG~~~G~~riw~~--~G~l~~tl~~HkgPI~slKWnk-------------~G~yilS--~~-------------  295 (524)
T KOG0273|consen  246 DGTLLATGSEDGEARIWNK--DGNLISTLGQHKGPIFSLKWNK-------------KGTYILS--GG-------------  295 (524)
T ss_pred             CCCeEEEeecCcEEEEEec--CchhhhhhhccCCceEEEEEcC-------------CCCEEEe--cc-------------
Confidence            488999999998 799998  4778899999999999999984             2346654  21             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCE-EEEEecC-CeEEE-EeCCeEEEEECCCCceeEEEEe
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV-CMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V-~sV~~s~-~~LaV-~~~~~I~iwD~~t~~~l~tl~t  229 (765)
                                        .++++.+||..+|+.-..+.|++.. ++|..-. ..+|+ +.+..|+++-+.--+...++.+
T Consensus       296 ------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G  357 (524)
T KOG0273|consen  296 ------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG  357 (524)
T ss_pred             ------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec
Confidence                              2478999999999999999999866 8888654 44554 4566799999988788888888


Q ss_pred             cCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255          230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (765)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~--~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l  305 (765)
                      |.++             ...+-+.|  ..||+++++.  .+++.|.-.-.                              
T Consensus       358 H~g~-------------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~------------------------------  394 (524)
T KOG0273|consen  358 HHGE-------------VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV------------------------------  394 (524)
T ss_pred             ccCc-------------eEEEEECCCCceEEEecCCCeeEeeecCCCcch------------------------------
Confidence            8874             34567776  7899998873  33443321000                              


Q ss_pred             hcccceeecccccc-----cCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 004255          306 AAGLSKTLSKYCQE-----LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS  380 (765)
Q Consensus       306 a~G~~ktls~~~~~-----~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd  380 (765)
                           +.|..|..+     ..|.+-.   ..++   ..+..++.+..|++|++||+..+.+++.|..|+.||++|+|+|+
T Consensus       395 -----~~l~~Hskei~t~~wsp~g~v---~~n~---~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~  463 (524)
T KOG0273|consen  395 -----HDLQAHSKEIYTIKWSPTGPV---TSNP---NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN  463 (524)
T ss_pred             -----hhhhhhccceeeEeecCCCCc---cCCC---cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence                 011111111     1122211   1111   11224567889999999999999999999999999999999999


Q ss_pred             CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       381 G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                      |++||+|+.|| .|++|+++.       |           .+++-.+|.  +.|..++|+.+|.+|+++-.||.+.+-|+
T Consensus       464 g~ylAsGs~dg-~V~iws~~~-------~-----------~l~~s~~~~--~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  464 GRYLASGSLDG-CVHIWSTKT-------G-----------KLVKSYQGT--GGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             CcEEEecCCCC-eeEeccccc-------h-----------heeEeecCC--CeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            99999999966 599999965       3           556555553  45999999999999999999999999887


Q ss_pred             C
Q 004255          461 S  461 (765)
Q Consensus       461 ~  461 (765)
                      .
T Consensus       523 r  523 (524)
T KOG0273|consen  523 R  523 (524)
T ss_pred             c
Confidence            4

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.84  E-value=1.2e-18  Score=179.73  Aligned_cols=257  Identities=13%  Similarity=0.093  Sum_probs=187.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      .-+|..+|.-..|-.       +++.|+.++++| +-|||.- +.+-...+..+..+|-..++.|.             .
T Consensus        51 LkGH~~Ki~~~~ws~-------Dsr~ivSaSqDGklIvWDs~-TtnK~haipl~s~WVMtCA~sPS-------------g  109 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWST-------DSRRIVSASQDGKLIVWDSF-TTNKVHAIPLPSSWVMTCAYSPS-------------G  109 (343)
T ss_pred             ecccccceeeeEecC-------CcCeEEeeccCCeEEEEEcc-cccceeEEecCceeEEEEEECCC-------------C
Confidence            345666676655533       467889999998 7999985 45555677788889999998874             3


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC------eEEEEEeCC-CCEEEEEecC-
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH------CYEHVLRFR-SSVCMVRCSP-  202 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg------~~v~tL~~~-s~V~sV~~s~-  202 (765)
                      .++|  +|+                               .++...||++++.      ...++|..+ +-+.+++|-. 
T Consensus       110 ~~VA--cGG-------------------------------LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD  156 (343)
T KOG0286|consen  110 NFVA--CGG-------------------------------LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD  156 (343)
T ss_pred             CeEE--ecC-------------------------------cCceeEEEecccccccccceeeeeecCccceeEEEEEcCC
Confidence            3554  221                               2468899999866      234455544 5677777755 


Q ss_pred             -CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCC
Q 004255          203 -RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       203 -~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                       .+|..+.+.+..+||+++++....+.+|..-             +-.++|+|       ++                  
T Consensus       157 ~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD-------------V~slsl~p-------~~------------------  198 (343)
T KOG0286|consen  157 NHILTGSGDMTCALWDIETGQQTQVFHGHTGD-------------VMSLSLSP-------SD------------------  198 (343)
T ss_pred             CceEecCCCceEEEEEcccceEEEEecCCccc-------------EEEEecCC-------CC------------------
Confidence             4555556678999999999988888877641             11222211       00                  


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~  361 (765)
                                                                               ..+.++++.|+..+|||++.+.+
T Consensus       199 ---------------------------------------------------------~ntFvSg~cD~~aklWD~R~~~c  221 (343)
T KOG0286|consen  199 ---------------------------------------------------------GNTFVSGGCDKSAKLWDVRSGQC  221 (343)
T ss_pred             ---------------------------------------------------------CCeEEecccccceeeeeccCcce
Confidence                                                                     00123567899999999999999


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (765)
Q Consensus       362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (765)
                      +++|.+|.+.|++++|.|+|.-+||||+|++ +|+||++..                 +.+..+..-.....|++++||.
T Consensus       222 ~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD-----------------~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  222 VQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRAD-----------------QELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             eEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCC-----------------cEEeeeccCcccCCceeEEEcc
Confidence            9999999999999999999999999999775 999999752                 3444443222345699999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCcccccccCC
Q 004255          442 YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ  475 (765)
Q Consensus       442 Dg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~  475 (765)
                      .|++|.+|-.|.+++|||.-.....-.+.+|.+.
T Consensus       284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR  317 (343)
T KOG0286|consen  284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR  317 (343)
T ss_pred             cccEEEeeecCCceeEeeccccceEEEeeccCCe
Confidence            9999999999999999997654444456788643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.83  E-value=2.5e-18  Score=176.54  Aligned_cols=248  Identities=15%  Similarity=0.175  Sum_probs=181.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC----CcceEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA----SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGF  126 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~----g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f  126 (765)
                      .++++|.|.-...-.      ..+.+|+.+.++- +-+|++...    |...+.+.+|...|..+.+.++.         
T Consensus        11 l~gh~d~Vt~la~~~------~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg---------   75 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKI------KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG---------   75 (315)
T ss_pred             ecCCCceEEEEEeec------CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC---------
Confidence            467888887665543      1356888888774 899999532    44566777777778887777542         


Q ss_pred             cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-CEEEEEecC--C
Q 004255          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--R  203 (765)
Q Consensus       127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~  203 (765)
                        +  + |+ ++                     +|          ++++|+||+.+|+..+.|..|. -|++|++++  +
T Consensus        76 --~--~-al-S~---------------------sw----------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~  118 (315)
T KOG0279|consen   76 --N--F-AL-SA---------------------SW----------DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR  118 (315)
T ss_pred             --c--e-EE-ec---------------------cc----------cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc
Confidence              1  2 32 11                     22          4799999999999999998775 789999998  4


Q ss_pred             eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCC
Q 004255          204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (765)
Q Consensus       204 ~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~  282 (765)
                      .|+.|. |.+|.+||+.+ ++.+++......          + .+..+.|+|+-     +++                  
T Consensus       119 qivSGSrDkTiklwnt~g-~ck~t~~~~~~~----------~-WVscvrfsP~~-----~~p------------------  163 (315)
T KOG0279|consen  119 QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHR----------E-WVSCVRFSPNE-----SNP------------------  163 (315)
T ss_pred             eeecCCCcceeeeeeecc-cEEEEEecCCCc----------C-cEEEEEEcCCC-----CCc------------------
Confidence            566655 56799999875 466776543210          0 12234443310     000                  


Q ss_pred             CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i  362 (765)
                                                                                .++.++.|++|+|||+.+-+..
T Consensus       164 ----------------------------------------------------------~Ivs~s~DktvKvWnl~~~~l~  185 (315)
T KOG0279|consen  164 ----------------------------------------------------------IIVSASWDKTVKVWNLRNCQLR  185 (315)
T ss_pred             ----------------------------------------------------------EEEEccCCceEEEEccCCcchh
Confidence                                                                      1234568999999999999999


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (765)
Q Consensus       363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (765)
                      ..|.+|++.++.++|||||.++|+|+.|| .+.+||+..       +          +++|.|.   ....|.+++|+|+
T Consensus       186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg-~~~LwdL~~-------~----------k~lysl~---a~~~v~sl~fspn  244 (315)
T KOG0279|consen  186 TTFIGHSGYVNTVTVSPDGSLCASGGKDG-EAMLWDLNE-------G----------KNLYSLE---AFDIVNSLCFSPN  244 (315)
T ss_pred             hccccccccEEEEEECCCCCEEecCCCCc-eEEEEEccC-------C----------ceeEecc---CCCeEeeEEecCC
Confidence            99999999999999999999999999966 599999965       3          5788885   2357999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          443 SQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       443 g~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      --||+.+...+ |+|||+.+....
T Consensus       245 rywL~~at~~s-IkIwdl~~~~~v  267 (315)
T KOG0279|consen  245 RYWLCAATATS-IKIWDLESKAVV  267 (315)
T ss_pred             ceeEeeccCCc-eEEEeccchhhh
Confidence            99998887665 999999876543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=7.2e-19  Score=185.66  Aligned_cols=252  Identities=15%  Similarity=0.159  Sum_probs=188.9

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL  132 (765)
                      ++++.+.-+.||-       .+++|+.+..+- +++||.+..-.+.+.+.+|+-.|..+.++|..             ..
T Consensus       148 GHt~sv~di~~~a-------~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-------------d~  207 (406)
T KOG0295|consen  148 GHTDSVFDISFDA-------SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-------------DH  207 (406)
T ss_pred             ccccceeEEEEec-------CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-------------Ce
Confidence            3455555555544       368999999987 99999987677888999999999999999852             25


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-CEEEEEecC--CeEEEEe
Q 004255          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAVGL  209 (765)
Q Consensus       133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~~LaV~~  209 (765)
                      |+.++                                 .+++|+.|++.+|.++.++..++ .|..|+.+.  .++|.+.
T Consensus       208 ilS~s---------------------------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s  254 (406)
T KOG0295|consen  208 ILSCS---------------------------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS  254 (406)
T ss_pred             eeecc---------------------------------cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence            55422                                 24789999999999999998764 788999887  5666655


Q ss_pred             -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255          210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (765)
Q Consensus       210 -~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp  288 (765)
                       +.+|++|-+.+++++..++.|.-|             +..+++-|- .+|++.                    +-++..
T Consensus       255 ~dqtl~vW~~~t~~~k~~lR~hEh~-------------vEci~wap~-~~~~~i--------------------~~at~~  300 (406)
T KOG0295|consen  255 NDQTLRVWVVATKQCKAELREHEHP-------------VECIAWAPE-SSYPSI--------------------SEATGS  300 (406)
T ss_pred             CCceEEEEEeccchhhhhhhccccc-------------eEEEEeccc-ccCcch--------------------hhccCC
Confidence             457999999999888888876653             123444220 011110                    000000


Q ss_pred             CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH  368 (765)
Q Consensus       289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH  368 (765)
                      .+                                               ++.....+..|++|++||+.++.++.+|.+|
T Consensus       301 ~~-----------------------------------------------~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh  333 (406)
T KOG0295|consen  301 TN-----------------------------------------------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH  333 (406)
T ss_pred             CC-----------------------------------------------CccEEEeecccceEEEEeccCCeEEEEEecc
Confidence            00                                               0011235678999999999999999999999


Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI  448 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las  448 (765)
                      ...|..++|+|-|++|+++.+|+ ++||||++.       +          +++..+.  .+..-++++.|..+.-++++
T Consensus       334 dnwVr~~af~p~Gkyi~ScaDDk-tlrvwdl~~-------~----------~cmk~~~--ah~hfvt~lDfh~~~p~VvT  393 (406)
T KOG0295|consen  334 DNWVRGVAFSPGGKYILSCADDK-TLRVWDLKN-------L----------QCMKTLE--AHEHFVTSLDFHKTAPYVVT  393 (406)
T ss_pred             cceeeeeEEcCCCeEEEEEecCC-cEEEEEecc-------c----------eeeeccC--CCcceeEEEecCCCCceEEe
Confidence            99999999999999999999855 599999965       2          4666554  23446999999999999999


Q ss_pred             EeCCCcEEEEe
Q 004255          449 VSSKGTCHVFV  459 (765)
Q Consensus       449 ~S~dgTVhIwd  459 (765)
                      |+-|.++++|.
T Consensus       394 GsVdqt~KvwE  404 (406)
T KOG0295|consen  394 GSVDQTVKVWE  404 (406)
T ss_pred             ccccceeeeee
Confidence            99999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=5.5e-18  Score=191.62  Aligned_cols=271  Identities=16%  Similarity=0.206  Sum_probs=184.8

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .-++|++|..+| |.+|.+ +.-++...++-.+-+|..+.+.             ..+..||+-+. .            
T Consensus       276 ~t~~lvvgFssG~f~Lyel-P~f~lih~LSis~~~I~t~~~N-------------~tGDWiA~g~~-k------------  328 (893)
T KOG0291|consen  276 GTNLLVVGFSSGEFGLYEL-PDFNLIHSLSISDQKILTVSFN-------------STGDWIAFGCS-K------------  328 (893)
T ss_pred             CceEEEEEecCCeeEEEec-CCceEEEEeecccceeeEEEec-------------ccCCEEEEcCC-c------------
Confidence            357899999998 789999 4456777788777788888766             23448886221 1            


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEE
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVL  228 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~tl~  228 (765)
                                         -+.+-+|+.++..+|-..+.| ..+.+++.+|  ++||+|.+ ++|+|||...+-|..|+.
T Consensus       329 -------------------lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt  389 (893)
T KOG0291|consen  329 -------------------LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT  389 (893)
T ss_pred             -------------------cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec
Confidence                               147999999999999888866 5899999998  48888765 589999999999999998


Q ss_pred             ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccc-cCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255          229 TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRL-SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (765)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~-s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l  305 (765)
                      .|.+.             +..+.|.-  +.|-+++-+      |++ .||...+..--.-++|.--+++           
T Consensus       390 eHts~-------------Vt~v~f~~~g~~llssSLD------GtVRAwDlkRYrNfRTft~P~p~Qfs-----------  439 (893)
T KOG0291|consen  390 EHTSG-------------VTAVQFTARGNVLLSSSLD------GTVRAWDLKRYRNFRTFTSPEPIQFS-----------  439 (893)
T ss_pred             cCCCc-------------eEEEEEEecCCEEEEeecC------CeEEeeeecccceeeeecCCCceeee-----------
Confidence            88762             23333332  444444433      222 3443222111001111100000           


Q ss_pred             hcccceeecccccccCCCCCCCCccCCCccccccccccccCCC-CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 004255          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA-GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL  384 (765)
Q Consensus       306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~d-G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lL  384 (765)
                                            .++..+.+.    -+..++.| -.|.||++++|+.+-.|.+|.+||.+|+|+|+|+.|
T Consensus       440 ----------------------cvavD~sGe----lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~L  493 (893)
T KOG0291|consen  440 ----------------------CVAVDPSGE----LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLL  493 (893)
T ss_pred             ----------------------EEEEcCCCC----EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeE
Confidence                                  000111111    01123333 479999999999999999999999999999999999


Q ss_pred             EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       385 ATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      ||+|. |++||+||+-..     .|           .+-++.   ....+..++|+|||+-||+++.||.|.+||++...
T Consensus       494 aS~SW-DkTVRiW~if~s-----~~-----------~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  494 ASGSW-DKTVRIWDIFSS-----SG-----------TVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV  553 (893)
T ss_pred             Eeccc-cceEEEEEeecc-----Cc-----------eeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence            99999 567999998431     12           222332   12458999999999999999999999999998654


Q ss_pred             CC
Q 004255          465 GD  466 (765)
Q Consensus       465 g~  466 (765)
                      ..
T Consensus       554 q~  555 (893)
T KOG0291|consen  554 QV  555 (893)
T ss_pred             ee
Confidence            43

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.81  E-value=1.9e-17  Score=188.93  Aligned_cols=237  Identities=18%  Similarity=0.206  Sum_probs=177.4

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCc
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR  150 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~--~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~  150 (765)
                      +++.|+.+..++ +++|+.+. ..  +...+..|.-.|..++|.|++           +  .|+  ++.           
T Consensus       170 ~g~~l~~~~~~~~i~~~~~~~-~~~~~~~~l~~h~~~v~~~~fs~d~-----------~--~l~--s~s-----------  222 (456)
T KOG0266|consen  170 DGRALAAASSDGLIRIWKLEG-IKSNLLRELSGHTRGVSDVAFSPDG-----------S--YLL--SGS-----------  222 (456)
T ss_pred             CCCeEEEccCCCcEEEeeccc-ccchhhccccccccceeeeEECCCC-----------c--EEE--Eec-----------
Confidence            466788887766 89999944 44  555568888999999999863           1  343  221           


Q ss_pred             CCCCCcccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeE
Q 004255          151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKF  225 (765)
Q Consensus       151 ~~~~~~r~g~~~~~~~~~~~~p~tV~lWdl-ktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~  225 (765)
                                          .+.+|++||+ ..+..+++++.| ..|++++|++  ++|+.|. ++.|+|||++++++..
T Consensus       223 --------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~  282 (456)
T KOG0266|consen  223 --------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR  282 (456)
T ss_pred             --------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE
Confidence                                2479999999 566899999865 6899999998  5777654 5689999999999999


Q ss_pred             EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (765)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l  305 (765)
                      .|.+|..+             ...++|++       +.                           ..             
T Consensus       283 ~l~~hs~~-------------is~~~f~~-------d~---------------------------~~-------------  302 (456)
T KOG0266|consen  283 KLKGHSDG-------------ISGLAFSP-------DG---------------------------NL-------------  302 (456)
T ss_pred             eeeccCCc-------------eEEEEECC-------CC---------------------------CE-------------
Confidence            99988763             22334422       11                           00             


Q ss_pred             hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCC--eEEEEECCCC
Q 004255          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSP--ISALCFDPSG  381 (765)
Q Consensus       306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~aH~~~--IsaLaFSpdG  381 (765)
                                                          +..++.||.|+|||+.++.  ++..+..+..+  +++++|+|+|
T Consensus       303 ------------------------------------l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~  346 (456)
T KOG0266|consen  303 ------------------------------------LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG  346 (456)
T ss_pred             ------------------------------------EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC
Confidence                                                1123568999999999999  67888887666  9999999999


Q ss_pred             CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255          382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a--~I~slaFSpDg~~Las~S~dgTVhIwd  459 (765)
                      .+|++++.|+ .+++||+..       +          ..+..+ +|+...  .+.+..++++++++.+++.|++|++|+
T Consensus       347 ~~ll~~~~d~-~~~~w~l~~-------~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~  407 (456)
T KOG0266|consen  347 KYLLSASLDR-TLKLWDLRS-------G----------KSVGTY-TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD  407 (456)
T ss_pred             cEEEEecCCC-eEEEEEccC-------C----------cceeee-cccCCcceeEecccccCCCCeEEEEeCCceEEEEe
Confidence            9999999954 599999964       2          122222 344332  456667789999999999999999999


Q ss_pred             CCCCCCCcccccc
Q 004255          460 LSPFGGDSGFQTL  472 (765)
Q Consensus       460 l~~~gg~~~~~~h  472 (765)
                      +.+......+..|
T Consensus       408 ~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  408 SSSGGILQRLEGH  420 (456)
T ss_pred             CCccchhhhhcCC
Confidence            9997667777787

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.81  E-value=1.5e-18  Score=196.16  Aligned_cols=113  Identities=21%  Similarity=0.261  Sum_probs=95.7

Q ss_pred             ccccCCCCeEEEEECCCCc-----EE----EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255          342 GADMDNAGIVVVKDFVTRA-----II----SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK  412 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~-----~i----~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~  412 (765)
                      ++++++|+++++|++...+     .+    .+-.+|...|++++.+|+..++||||. |++.+||++..       +   
T Consensus       427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq-DktaKiW~le~-------~---  495 (775)
T KOG0319|consen  427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ-DKTAKIWDLEQ-------L---  495 (775)
T ss_pred             EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc-ccceeeecccC-------c---
Confidence            4578899999999997621     11    134589999999999999999999999 56699999953       2   


Q ss_pred             cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccC
Q 004255          413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS  474 (765)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~  474 (765)
                             +.+..| +||++ .|+|+.|++..+.||++|.|+||+||.|+++.+..++.+|.+
T Consensus       496 -------~l~~vL-sGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~  548 (775)
T KOG0319|consen  496 -------RLLGVL-SGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS  548 (775)
T ss_pred             -------eEEEEe-eCCcc-ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence                   466777 47665 499999999999999999999999999999999999999974

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.80  E-value=3.1e-18  Score=185.64  Aligned_cols=270  Identities=14%  Similarity=0.146  Sum_probs=180.2

Q ss_pred             EEEEEecC-cEEEEEccC-CCcceEeee--------ecc----CCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCC
Q 004255           77 VLLLGYQN-GFQVLDVED-ASNFNELVS--------KRD----GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTN  142 (765)
Q Consensus        77 vL~~G~~~-G~qVWdv~~-~g~~~ells--------~~d----g~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~  142 (765)
                      +|+.|..+ +.++|++.. ...+.+.+-        .++    ..|.+|.+.-             ++.+||+-..    
T Consensus       193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~-------------~G~~LatG~~----  255 (524)
T KOG0273|consen  193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN-------------DGTLLATGSE----  255 (524)
T ss_pred             hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC-------------CCCeEEEeec----
Confidence            77777765 799999963 332322211        122    3488888773             3457765221    


Q ss_pred             CCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEE-EeCCeEEEEEC
Q 004255          143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV-GLATQIYCFDA  218 (765)
Q Consensus       143 ~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV-~~~~~I~iwD~  218 (765)
                                                   ++.+|+|+. .|.++.+|.++ ++|++++.|+  .+|+. +-++++.+||+
T Consensus       256 -----------------------------~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~  305 (524)
T KOG0273|consen  256 -----------------------------DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA  305 (524)
T ss_pred             -----------------------------CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence                                         368999998 68888898765 7999999998  34554 55778999999


Q ss_pred             CCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeeh
Q 004255          219 LTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA  298 (765)
Q Consensus       219 ~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a  298 (765)
                      .+++..+...-|..|.+      ++.      -.+..-.|.++.+..+                          .|.+. 
T Consensus       306 ~~g~~~q~f~~~s~~~l------DVd------W~~~~~F~ts~td~~i--------------------------~V~kv-  346 (524)
T KOG0273|consen  306 HTGTVKQQFEFHSAPAL------DVD------WQSNDEFATSSTDGCI--------------------------HVCKV-  346 (524)
T ss_pred             cCceEEEeeeeccCCcc------ceE------EecCceEeecCCCceE--------------------------EEEEe-
Confidence            99987666655544300      000      0111112223222100                          01110 


Q ss_pred             hhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEC
Q 004255          299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFD  378 (765)
Q Consensus       299 ~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFS  378 (765)
                            -..+-.+|+.+|..+      .+++-.++.+    ..+++++.|++++||..........|.+|...|..+.|+
T Consensus       347 ------~~~~P~~t~~GH~g~------V~alk~n~tg----~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~ws  410 (524)
T KOG0273|consen  347 ------GEDRPVKTFIGHHGE------VNALKWNPTG----SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWS  410 (524)
T ss_pred             ------cCCCcceeeecccCc------eEEEEECCCC----ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeec
Confidence                  001111455554432      2222222222    235678899999999999999999999999999999999


Q ss_pred             CC---------CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255          379 PS---------GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV  449 (765)
Q Consensus       379 pd---------G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~  449 (765)
                      |+         |..||+++.|. ++++||+..       |          .+++.|.+  |+.+|++++|||||+|||+|
T Consensus       411 p~g~v~~n~~~~~~l~sas~ds-tV~lwdv~~-------g----------v~i~~f~k--H~~pVysvafS~~g~ylAsG  470 (524)
T KOG0273|consen  411 PTGPVTSNPNMNLMLASASFDS-TVKLWDVES-------G----------VPIHTLMK--HQEPVYSVAFSPNGRYLASG  470 (524)
T ss_pred             CCCCccCCCcCCceEEEeecCC-eEEEEEccC-------C----------ceeEeecc--CCCceEEEEecCCCcEEEec
Confidence            95         46899999955 599999965       4          68888865  35689999999999999999


Q ss_pred             eCCCcEEEEeCCCCCCCcc
Q 004255          450 SSKGTCHVFVLSPFGGDSG  468 (765)
Q Consensus       450 S~dgTVhIwdl~~~gg~~~  468 (765)
                      +.||-||||++..+.-...
T Consensus       471 s~dg~V~iws~~~~~l~~s  489 (524)
T KOG0273|consen  471 SLDGCVHIWSTKTGKLVKS  489 (524)
T ss_pred             CCCCeeEeccccchheeEe
Confidence            9999999999987654433

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.4e-18  Score=183.45  Aligned_cols=248  Identities=16%  Similarity=0.192  Sum_probs=186.3

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL  133 (765)
                      ++-.|..+-|-.       ..-+.+++++++ +++||.. ++++.+.|.+|...|..|.+.             ...-+|
T Consensus       107 ~r~~vt~v~~hp-------~~~~v~~as~d~tikv~D~~-tg~~e~~LrGHt~sv~di~~~-------------a~Gk~l  165 (406)
T KOG0295|consen  107 HRSSVTRVIFHP-------SEALVVSASEDATIKVFDTE-TGELERSLRGHTDSVFDISFD-------------ASGKYL  165 (406)
T ss_pred             cccceeeeeecc-------CceEEEEecCCceEEEEEcc-chhhhhhhhccccceeEEEEe-------------cCccEE
Confidence            444555555522       345777777775 9999995 688989999999889988876             333355


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC-CeEEEEEeCCC-CEEEEEecC--CeEEEEe
Q 004255          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLRFRS-SVCMVRCSP--RIVAVGL  209 (765)
Q Consensus       134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt-g~~v~tL~~~s-~V~sV~~s~--~~LaV~~  209 (765)
                      |.  +.                               ++-.+++||+.+ .++++.+..+. .|.+|.|-|  ..|+.+.
T Consensus       166 ~t--cS-------------------------------sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s  212 (406)
T KOG0295|consen  166 AT--CS-------------------------------SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS  212 (406)
T ss_pred             Ee--cC-------------------------------CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc
Confidence            44  21                               123499999986 57777776654 678888876  5666655


Q ss_pred             -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255          210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (765)
Q Consensus       210 -~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp  288 (765)
                       |+.|+.||+.|+.+++++..|+.+             +..+++       ..+                          
T Consensus       213 rD~tik~We~~tg~cv~t~~~h~ew-------------vr~v~v-------~~D--------------------------  246 (406)
T KOG0295|consen  213 RDNTIKAWECDTGYCVKTFPGHSEW-------------VRMVRV-------NQD--------------------------  246 (406)
T ss_pred             cccceeEEecccceeEEeccCchHh-------------EEEEEe-------cCC--------------------------
Confidence             567999999999999998876652             222222       111                          


Q ss_pred             CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH  368 (765)
Q Consensus       289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH  368 (765)
                        |.                                                -+++++.|.+|++|-+.++.+...|+.|
T Consensus       247 --Gt------------------------------------------------i~As~s~dqtl~vW~~~t~~~k~~lR~h  276 (406)
T KOG0295|consen  247 --GT------------------------------------------------IIASCSNDQTLRVWVVATKQCKAELREH  276 (406)
T ss_pred             --ee------------------------------------------------EEEecCCCceEEEEEeccchhhhhhhcc
Confidence              00                                                0224567889999999999999999999


Q ss_pred             CCCeEEEEECCC----------C-----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 004255          369 TSPISALCFDPS----------G-----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT  433 (765)
Q Consensus       369 ~~~IsaLaFSpd----------G-----~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~  433 (765)
                      ..+|-+++|-|.          |     .+|+++|.|+ +||+||+.+       |          .+|++|. |+. ..
T Consensus       277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk-tIk~wdv~t-------g----------~cL~tL~-ghd-nw  336 (406)
T KOG0295|consen  277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK-TIKIWDVST-------G----------MCLFTLV-GHD-NW  336 (406)
T ss_pred             ccceEEEEecccccCcchhhccCCCCCccEEEeecccc-eEEEEeccC-------C----------eEEEEEe-ccc-ce
Confidence            999999999762          3     5899999955 699999976       4          6899985 544 57


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255          434 IQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       434 I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h  472 (765)
                      |.+++|+|-|+||+++.+|+|+||||++...+..++..|
T Consensus       337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah  375 (406)
T KOG0295|consen  337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH  375 (406)
T ss_pred             eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence            999999999999999999999999999998887766655

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.80  E-value=1.5e-17  Score=170.80  Aligned_cols=226  Identities=15%  Similarity=0.207  Sum_probs=163.1

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      +++..+.|..++ +++||++ .++....|.+|...|-.++|.|+            +|.+   |++.             
T Consensus        74 dg~~alS~swD~~lrlWDl~-~g~~t~~f~GH~~dVlsva~s~d------------n~qi---vSGS-------------  124 (315)
T KOG0279|consen   74 DGNFALSASWDGTLRLWDLA-TGESTRRFVGHTKDVLSVAFSTD------------NRQI---VSGS-------------  124 (315)
T ss_pred             CCceEEeccccceEEEEEec-CCcEEEEEEecCCceEEEEecCC------------Ccee---ecCC-------------
Confidence            577778887776 8999995 67889999999999999999974            3443   3331             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCCEEEEEecCC----eEEE-EeCCeEEEEECCCCceeE
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPR----IVAV-GLATQIYCFDALTLENKF  225 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~--~s~V~sV~~s~~----~LaV-~~~~~I~iwD~~t~~~l~  225 (765)
                                        -++|+++||...+......+.  ++.|..|+|+|+    +|+. +.|..|++||+.+.+..+
T Consensus       125 ------------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~  186 (315)
T KOG0279|consen  125 ------------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT  186 (315)
T ss_pred             ------------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence                              248999999986544444443  678999999995    4554 446689999999998877


Q ss_pred             EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (765)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l  305 (765)
                      +..+|..-             .+.+++||       +                            |++            
T Consensus       187 ~~~gh~~~-------------v~t~~vSp-------D----------------------------Gsl------------  206 (315)
T KOG0279|consen  187 TFIGHSGY-------------VNTVTVSP-------D----------------------------GSL------------  206 (315)
T ss_pred             cccccccc-------------EEEEEECC-------C----------------------------CCE------------
Confidence            77665430             12344432       1                            111            


Q ss_pred             hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 004255          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV  385 (765)
Q Consensus       306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLA  385 (765)
                                                          .++++.||.+.+||++.++.+..| .|..+|.+|+|+|+--.|+
T Consensus       207 ------------------------------------casGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~  249 (315)
T KOG0279|consen  207 ------------------------------------CASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLC  249 (315)
T ss_pred             ------------------------------------EecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEe
Confidence                                                123568999999999999997776 4678999999999987776


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---ccc--c--cccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGI--T--SATIQDICFSHYSQWIAIVSSKGTCHVF  458 (765)
Q Consensus       386 TaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~---rG~--~--~a~I~slaFSpDg~~Las~S~dgTVhIw  458 (765)
                      .|-  ++.|+|||+.+.                 ..+.+|+   .|.  .  ...-.+++||+||+.|.++-.|+.|++|
T Consensus       250 ~at--~~sIkIwdl~~~-----------------~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  250 AAT--ATSIKIWDLESK-----------------AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             ecc--CCceEEEeccch-----------------hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence            654  456999999762                 1222221   111  0  1235678999999999999999999999


Q ss_pred             eCCC
Q 004255          459 VLSP  462 (765)
Q Consensus       459 dl~~  462 (765)
                      .+..
T Consensus       311 qv~~  314 (315)
T KOG0279|consen  311 QVAK  314 (315)
T ss_pred             Eeec
Confidence            8754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.80  E-value=2.6e-17  Score=199.75  Aligned_cols=236  Identities=14%  Similarity=0.212  Sum_probs=162.8

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      +..|++|..+| ++|||+. .++....+..|.+.|..+++.|.            ...+|++ ++               
T Consensus       545 ~~~las~~~Dg~v~lWd~~-~~~~~~~~~~H~~~V~~l~~~p~------------~~~~L~S-gs---------------  595 (793)
T PLN00181        545 KSQVASSNFEGVVQVWDVA-RSQLVTEMKEHEKRVWSIDYSSA------------DPTLLAS-GS---------------  595 (793)
T ss_pred             CCEEEEEeCCCeEEEEECC-CCeEEEEecCCCCCEEEEEEcCC------------CCCEEEE-Ec---------------
Confidence            45677776665 9999995 46677778889999999999862            1225554 22               


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEec---CCeEEEEe-CCeEEEEECCCCc-eeEEEE
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCS---PRIVAVGL-ATQIYCFDALTLE-NKFSVL  228 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s---~~~LaV~~-~~~I~iwD~~t~~-~l~tl~  228 (765)
                                       .+++|++||+++++.+.++..+..|.++.++   .++|++|. ++.|++||+.+.+ .+.++.
T Consensus       596 -----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~  658 (793)
T PLN00181        596 -----------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI  658 (793)
T ss_pred             -----------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence                             1368999999999999999988899999985   36777765 5679999998765 234444


Q ss_pred             ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255          229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (765)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G  308 (765)
                      +|..+             .       .++++....                                             
T Consensus       659 ~h~~~-------------V-------~~v~f~~~~---------------------------------------------  673 (793)
T PLN00181        659 GHSKT-------------V-------SYVRFVDSS---------------------------------------------  673 (793)
T ss_pred             CCCCC-------------E-------EEEEEeCCC---------------------------------------------
Confidence            44331             0       122222100                                             


Q ss_pred             cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC------CcEEEEeccCCCCeEEEEECCCCC
Q 004255          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------RAIISQFKAHTSPISALCFDPSGT  382 (765)
Q Consensus       309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s------~~~i~~~~aH~~~IsaLaFSpdG~  382 (765)
                                                      .+++++.||+|+|||+..      .+.+..|.+|...+.+++|+|+|.
T Consensus       674 --------------------------------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~  721 (793)
T PLN00181        674 --------------------------------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG  721 (793)
T ss_pred             --------------------------------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC
Confidence                                            012345789999999974      357889999999999999999999


Q ss_pred             EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       383 lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                      +||+|+.|+ .|+||+.....     ....+... ....+..+.-..+...|.+++|+||+..|++++.||+|+||++
T Consensus       722 ~lasgs~D~-~v~iw~~~~~~-----~~~s~~~~-~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        722 YIATGSETN-EVFVYHKAFPM-----PVLSYKFK-TIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEeCCC-EEEEEECCCCC-----ceEEEecc-cCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999966 59999974310     00000000 0000000000112245999999999999999999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.80  E-value=3.2e-19  Score=186.92  Aligned_cols=230  Identities=17%  Similarity=0.224  Sum_probs=170.5

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL  133 (765)
                      .-+.|.+..+|.         ..++.|.++ .++|||.++ -.+..+|.+|.|.|-|+++.              .| +|
T Consensus       196 ~skgVYClQYDD---------~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--------------~r-vi  250 (499)
T KOG0281|consen  196 NSKGVYCLQYDD---------EKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--------------ER-VI  250 (499)
T ss_pred             cCCceEEEEecc---------hhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--------------ce-EE
Confidence            445667666654         257778765 699999954 56889999999999999975              22 43


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEeCC-
Q 004255          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLAT-  211 (765)
Q Consensus       134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~~~-  211 (765)
                        ++|.                               ++.||++||..+|++++++-++ ..|+.++|+..+++++..+ 
T Consensus       251 --isGS-------------------------------SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDr  297 (499)
T KOG0281|consen  251 --VSGS-------------------------------SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDR  297 (499)
T ss_pred             --EecC-------------------------------CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCc
Confidence              3431                               3469999999999999999776 5899999999998887755 


Q ss_pred             eEEEEECCCCc---eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255          212 QIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (765)
Q Consensus       212 ~I~iwD~~t~~---~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp  288 (765)
                      .|.+||+....   +.+.|.+|-.             .++.+.|..+|                                
T Consensus       298 siaVWdm~sps~it~rrVLvGHrA-------------aVNvVdfd~ky--------------------------------  332 (499)
T KOG0281|consen  298 SIAVWDMASPTDITLRRVLVGHRA-------------AVNVVDFDDKY--------------------------------  332 (499)
T ss_pred             eeEEEeccCchHHHHHHHHhhhhh-------------heeeeccccce--------------------------------
Confidence            69999976432   1112222221             01222222222                                


Q ss_pred             CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH  368 (765)
Q Consensus       289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH  368 (765)
                                                                           +++++.|.++++|++.+++.+.++.+|
T Consensus       333 -----------------------------------------------------IVsASgDRTikvW~~st~efvRtl~gH  359 (499)
T KOG0281|consen  333 -----------------------------------------------------IVSASGDRTIKVWSTSTCEFVRTLNGH  359 (499)
T ss_pred             -----------------------------------------------------EEEecCCceEEEEeccceeeehhhhcc
Confidence                                                                 224456789999999999999999999


Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI  448 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las  448 (765)
                      .-.|.|+.+  .|+++++||. +.+||+||+..       |          .+|..|. |+ ..-|.+|.|.  .+.|++
T Consensus       360 kRGIAClQY--r~rlvVSGSS-DntIRlwdi~~-------G----------~cLRvLe-GH-EeLvRciRFd--~krIVS  415 (499)
T KOG0281|consen  360 KRGIACLQY--RDRLVVSGSS-DNTIRLWDIEC-------G----------ACLRVLE-GH-EELVRCIRFD--NKRIVS  415 (499)
T ss_pred             cccceehhc--cCeEEEecCC-CceEEEEeccc-------c----------HHHHHHh-ch-HHhhhheeec--Cceeee
Confidence            999999887  5899999999 55699999964       4          4665554 53 3468999996  578999


Q ss_pred             EeCCCcEEEEeCCCCC
Q 004255          449 VSSKGTCHVFVLSPFG  464 (765)
Q Consensus       449 ~S~dgTVhIwdl~~~g  464 (765)
                      |.-||+|+|||+...-
T Consensus       416 GaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  416 GAYDGKIKVWDLQAAL  431 (499)
T ss_pred             ccccceEEEEeccccc
Confidence            9999999999998643

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=169.05  Aligned_cols=230  Identities=17%  Similarity=0.176  Sum_probs=161.0

Q ss_pred             CCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeCCeEEEEECCCCce--eEEEEecCCcccCCCCccccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVG  246 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~--l~tl~t~p~p~~~~~~~~~~~~~  246 (765)
                      +.|||||...||.|..+++++ +.|-.+.+.+  +.||++.-..|++||+.+...  +.++..|..           |  
T Consensus        19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-----------N--   85 (311)
T KOG0315|consen   19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-----------N--   85 (311)
T ss_pred             cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC-----------c--
Confidence            579999999999999999986 5787777776  789998888999999998753  445555433           1  


Q ss_pred             cceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCC--CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255          247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVS--PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (765)
Q Consensus       247 ~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s--~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p  322 (765)
                      +..+.|-.  ||+..++++..     ...|+...+...-  ...+|-+.                               
T Consensus        86 VtaVgF~~dgrWMyTgseDgt-----~kIWdlR~~~~qR~~~~~spVn~-------------------------------  129 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGT-----VKIWDLRSLSCQRNYQHNSPVNT-------------------------------  129 (311)
T ss_pred             eEEEEEeecCeEEEecCCCce-----EEEEeccCcccchhccCCCCcce-------------------------------
Confidence            22333333  99999988742     2246554321100  00011100                               


Q ss_pred             CCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~  401 (765)
                          ...++++      .-+..++++|.|+|||+.+..+..++- .-..+|.+++..|||++|+.+-.+|+ ..||++..
T Consensus       130 ----vvlhpnQ------teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~  198 (311)
T KOG0315|consen  130 ----VVLHPNQ------TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLN  198 (311)
T ss_pred             ----EEecCCc------ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccC
Confidence                0111111      013467899999999999887666654 44578999999999999999998887 89999965


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-CCCcccccccC
Q 004255          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF-GGDSGFQTLSS  474 (765)
Q Consensus       402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~-gg~~~~~~h~~  474 (765)
                      +..           .....++.+++.  ++..|..+-||||+++||++|.|.|++||+++.+ +.+..+.+|..
T Consensus       199 ~~~-----------~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r  259 (311)
T KOG0315|consen  199 HQT-----------ASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR  259 (311)
T ss_pred             CCc-----------cccceEhhheec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc
Confidence            311           111245555542  3456899999999999999999999999999988 77777788853

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.79  E-value=9.7e-18  Score=173.69  Aligned_cols=260  Identities=14%  Similarity=0.094  Sum_probs=188.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..+++.+|.-+.|+.       .+.+|++|.-+ .|-+|++...-+-.-.+.+|.|.|-.+.+.++            +.
T Consensus        43 l~gh~geI~~~~F~P-------~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d------------~s  103 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHP-------DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD------------GS  103 (338)
T ss_pred             cCCCcceEEEEEECC-------CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC------------CC
Confidence            677999999999976       25688887765 59999974222223467799999999998864            21


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEE-EEEe---cCCeEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC-MVRC---SPRIVA  206 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~-sV~~---s~~~La  206 (765)
                       .|+. ++                                .+++|+.||.++|+++..++.+..+. ++.-   ++.+|.
T Consensus       104 -~i~S-~g--------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~  149 (338)
T KOG0265|consen  104 -HILS-CG--------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVC  149 (338)
T ss_pred             -EEEE-ec--------------------------------CCceEEEEecccceeeehhccccceeeecCccccCCeEEE
Confidence             3333 22                                25899999999999999998876543 4433   335677


Q ss_pred             EEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255          207 VGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (765)
Q Consensus       207 V~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s  285 (765)
                      .+.+ +++++||+++-+..+++.   ++             |...|+     ++....                      
T Consensus       150 SgsdD~t~kl~D~R~k~~~~t~~---~k-------------yqltAv-----~f~d~s----------------------  186 (338)
T KOG0265|consen  150 SGSDDGTLKLWDIRKKEAIKTFE---NK-------------YQLTAV-----GFKDTS----------------------  186 (338)
T ss_pred             ecCCCceEEEEeecccchhhccc---cc-------------eeEEEE-----Eecccc----------------------
Confidence            6654 579999999776655542   21             112222     111100                      


Q ss_pred             cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (765)
Q Consensus       286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~  365 (765)
                                       -                                     .+.++.-|+.|++||+.......++
T Consensus       187 -----------------~-------------------------------------qv~sggIdn~ikvWd~r~~d~~~~l  212 (338)
T KOG0265|consen  187 -----------------D-------------------------------------QVISGGIDNDIKVWDLRKNDGLYTL  212 (338)
T ss_pred             -----------------c-------------------------------------ceeeccccCceeeeccccCcceEEe
Confidence                             0                                     0113456889999999999999999


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCC
Q 004255          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYS  443 (765)
Q Consensus       366 ~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a--~I~slaFSpDg  443 (765)
                      .+|..+|..|..+|+|.+|.+-+.| .++++||++|.             ....+++..+..+.++-  ....++|||++
T Consensus       213 sGh~DtIt~lsls~~gs~llsnsMd-~tvrvwd~rp~-------------~p~~R~v~if~g~~hnfeknlL~cswsp~~  278 (338)
T KOG0265|consen  213 SGHADTITGLSLSRYGSFLLSNSMD-NTVRVWDVRPF-------------APSQRCVKIFQGHIHNFEKNLLKCSWSPNG  278 (338)
T ss_pred             ecccCceeeEEeccCCCcccccccc-ceEEEEEeccc-------------CCCCceEEEeecchhhhhhhcceeeccCCC
Confidence            9999999999999999999999994 56999999873             22234566665444432  35678999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCcccccccCC
Q 004255          444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ  475 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~  475 (765)
                      +++.++|.|..+++||....+....+.+|...
T Consensus       279 ~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs  310 (338)
T KOG0265|consen  279 TKITAGSADRFVYVWDTTSRRILYKLPGHYGS  310 (338)
T ss_pred             CccccccccceEEEeecccccEEEEcCCccee
Confidence            99999999999999999887777777788643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.79  E-value=1.6e-16  Score=174.18  Aligned_cols=319  Identities=14%  Similarity=0.170  Sum_probs=203.9

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeee---eccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVS---KRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells---~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      +|..=|..++|..    |  ..++..+|.++.+.+||=. +|+..-.|.   .|.|.|..|.++|+.           + 
T Consensus       188 ~HskFV~~VRysP----D--G~~Fat~gsDgki~iyDGk-tge~vg~l~~~~aHkGsIfalsWsPDs-----------~-  248 (603)
T KOG0318|consen  188 EHSKFVNCVRYSP----D--GSRFATAGSDGKIYIYDGK-TGEKVGELEDSDAHKGSIFALSWSPDS-----------T-  248 (603)
T ss_pred             ccccceeeEEECC----C--CCeEEEecCCccEEEEcCC-CccEEEEecCCCCccccEEEEEECCCC-----------c-
Confidence            3444577777755    2  1344445555559999974 565555555   788999999999962           2 


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEE-----EEEecCCeE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC-----MVRCSPRIV  205 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~-----sV~~s~~~L  205 (765)
                       .+|.+++                                 +.+++|||+.+++++.++.+.+.|.     .+--+..+|
T Consensus       249 -~~~T~Sa---------------------------------Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lI  294 (603)
T KOG0318|consen  249 -QFLTVSA---------------------------------DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLI  294 (603)
T ss_pred             -eEEEecC---------------------------------CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEE
Confidence             3555443                                 3689999999999999999877653     233355788


Q ss_pred             EEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceec--CCccccCCCCCCCC
Q 004255          206 AVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLS--NSGRLSPQNLTPSG  281 (765)
Q Consensus       206 aV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~--~~G~~s~~~lt~~~  281 (765)
                      .|++.+.|.++++.++..++++.+|...             ...+++++  .+|-+++.+..+.  ..|...-+.+.+. 
T Consensus       295 tVSl~G~in~ln~~d~~~~~~i~GHnK~-------------ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~-  360 (603)
T KOG0318|consen  295 TVSLSGTINYLNPSDPSVLKVISGHNKS-------------ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK-  360 (603)
T ss_pred             EEEcCcEEEEecccCCChhheecccccc-------------eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc-
Confidence            8999999999999999999999888652             45678877  7888887775432  2221111111100 


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhh-cccceee-------ccccccc-------------CCC-----------------
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFA-AGLSKTL-------SKYCQEL-------------LPD-----------------  323 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la-~G~~ktl-------s~~~~~~-------------~p~-----------------  323 (765)
                        ..     +..+.+.+.....++. .|.-.+|       .+|....             .++                 
T Consensus       361 --~h-----~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~  433 (603)
T KOG0318|consen  361 --GH-----TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQD  433 (603)
T ss_pred             --cc-----cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEec
Confidence              00     0111111111000000 0000000       0010000             000                 


Q ss_pred             ---------CC-CCCccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCC
Q 004255          324 ---------GS-SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYG  391 (765)
Q Consensus       324 ---------~s-~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG  391 (765)
                               +. ......+++    ....+-+++||.|+||.+..+.  ....+..|..+|++++|||||++||.+...+
T Consensus       434 ~~~~~~~~~~y~~s~vAv~~~----~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r  509 (603)
T KOG0318|consen  434 QTKVSSIPIGYESSAVAVSPD----GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR  509 (603)
T ss_pred             CCcceeeccccccceEEEcCC----CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC
Confidence                     00 011111111    1123467899999999998754  3446778999999999999999999999966


Q ss_pred             CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255          392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       392 t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~  469 (765)
                      . +-+||+...                  ....-+.+.|.+.|.+++||||.++||+||.|-.|+||+++.......+
T Consensus       510 k-vv~yd~~s~------------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i  568 (603)
T KOG0318|consen  510 K-VVLYDVASR------------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII  568 (603)
T ss_pred             c-EEEEEcccC------------------ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe
Confidence            5 889999652                  2222334556789999999999999999999999999999887665544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.78  E-value=2.3e-17  Score=188.14  Aligned_cols=187  Identities=22%  Similarity=0.294  Sum_probs=147.4

Q ss_pred             CCEEEEEECCCCe--EEEEEe-CCCCEEEEEecC--CeEEEEe-CCeEEEEEC-CCCceeEEEEecCCcccCCCCccccc
Q 004255          172 PTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDA-LTLENKFSVLTYPVPQLAGQGAVGIN  244 (765)
Q Consensus       172 p~tV~lWdlktg~--~v~tL~-~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~-~t~~~l~tl~t~p~p~~~~~~~~~~~  244 (765)
                      ++++++|++.+++  ..+++. +...|.+++|++  ++|+.+. |.+|+|||+ ..+.+++++.+|+.+           
T Consensus       180 ~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~-----------  248 (456)
T KOG0266|consen  180 DGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY-----------  248 (456)
T ss_pred             CCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc-----------
Confidence            4789999998777  677764 445899999988  5777665 458999999 566889999998873           


Q ss_pred             cccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255          245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (765)
Q Consensus       245 ~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~  324 (765)
                        ...++|.|       .                           + .+                               
T Consensus       249 --v~~~~f~p-------~---------------------------g-~~-------------------------------  260 (456)
T KOG0266|consen  249 --VTSVAFSP-------D---------------------------G-NL-------------------------------  260 (456)
T ss_pred             --eEEEEecC-------C---------------------------C-CE-------------------------------
Confidence              23344432       0                           0 01                               


Q ss_pred             CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 004255          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM  404 (765)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~  404 (765)
                                       +.+++.|++|+|||+.+++++..|.+|.++|++++|+++|.+|+++|.|+ .|+|||+..   
T Consensus       261 -----------------i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~---  319 (456)
T KOG0266|consen  261 -----------------LVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG-TIRVWDLET---  319 (456)
T ss_pred             -----------------EEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc-cEEEEECCC---
Confidence                             12456789999999999999999999999999999999999999999855 599999965   


Q ss_pred             cCCCCCCccccCCcce--EEEEEecccccc-cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          405 RSGSGNHKYDWNSSHV--HLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       405 ~~~sG~~~~~~~~s~~--~l~~l~rG~~~a-~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                          +          .  ++..+. +.... .++++.|+|++++|++++.|+++++||+..........+|.
T Consensus       320 ----~----------~~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~  376 (456)
T KOG0266|consen  320 ----G----------SKLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS  376 (456)
T ss_pred             ----C----------ceeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence                3          2  233443 33444 69999999999999999999999999999877777777775

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.78  E-value=2e-16  Score=192.04  Aligned_cols=245  Identities=13%  Similarity=0.097  Sum_probs=167.1

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC---Ccc---eEeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA---SNF---NELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~---g~~---~ells~~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      +.+.|.-+.|+.       .+++|++|..+| ++|||++..   +..   ....-.+...|..+.+.|.          .
T Consensus       482 ~~~~V~~i~fs~-------dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----------~  544 (793)
T PLN00181        482 SSNLVCAIGFDR-------DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY----------I  544 (793)
T ss_pred             CCCcEEEEEECC-------CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccC----------C
Confidence            667788888875       256788877766 999998431   100   0001112356777777652          1


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---C
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---R  203 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~  203 (765)
                        ..+||+..                                 .+++|+|||+.+++.+..+..+ ..|++|++++   .
T Consensus       545 --~~~las~~---------------------------------~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~  589 (793)
T PLN00181        545 --KSQVASSN---------------------------------FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPT  589 (793)
T ss_pred             --CCEEEEEe---------------------------------CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCC
Confidence              22555421                                 1369999999999999998765 6899999975   5


Q ss_pred             eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCC
Q 004255          204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (765)
Q Consensus       204 ~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~  282 (765)
                      +|++|. ++.|++||+.+++++.++..+..              ...++       +...+                   
T Consensus       590 ~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~--------------v~~v~-------~~~~~-------------------  629 (793)
T PLN00181        590 LLASGSDDGSVKLWSINQGVSIGTIKTKAN--------------ICCVQ-------FPSES-------------------  629 (793)
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEecCCC--------------eEEEE-------EeCCC-------------------
Confidence            677655 56899999999887776653211              01111       21110                   


Q ss_pred             CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-E
Q 004255          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-I  361 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~-~  361 (765)
                              +.                                                .++.+..||.|++||+.+.+ .
T Consensus       630 --------g~------------------------------------------------~latgs~dg~I~iwD~~~~~~~  653 (793)
T PLN00181        630 --------GR------------------------------------------------SLAFGSADHKVYYYDLRNPKLP  653 (793)
T ss_pred             --------CC------------------------------------------------EEEEEeCCCeEEEEECCCCCcc
Confidence                    00                                                01234578999999998866 5


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (765)
Q Consensus       362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (765)
                      +..+.+|...|.+++|. ++.+|+|+|.|+ .|+|||+.....    +       .....+..+. |+ ...+.+++|+|
T Consensus       654 ~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~-~ikiWd~~~~~~----~-------~~~~~l~~~~-gh-~~~i~~v~~s~  718 (793)
T PLN00181        654 LCTMIGHSKTVSYVRFV-DSSTLVSSSTDN-TLKLWDLSMSIS----G-------INETPLHSFM-GH-TNVKNFVGLSV  718 (793)
T ss_pred             ceEecCCCCCEEEEEEe-CCCEEEEEECCC-EEEEEeCCCCcc----c-------cCCcceEEEc-CC-CCCeeEEEEcC
Confidence            67889999999999997 788999999966 599999854110    0       0012455553 43 35689999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCC
Q 004255          442 YSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       442 Dg~~Las~S~dgTVhIwdl~~  462 (765)
                      ++++||+++.|++|+||+...
T Consensus       719 ~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        719 SDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             CCCEEEEEeCCCEEEEEECCC
Confidence            999999999999999999753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.78  E-value=4.6e-17  Score=184.25  Aligned_cols=248  Identities=17%  Similarity=0.201  Sum_probs=173.5

Q ss_pred             CCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCC
Q 004255           71 PSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN  149 (765)
Q Consensus        71 ~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~  149 (765)
                      .+.+++++++|..+| ++|||.. .|-|..+++.|...|..+++...             ...|+..+            
T Consensus       358 YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFteHts~Vt~v~f~~~-------------g~~llssS------------  411 (893)
T KOG0291|consen  358 YSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFTEHTSGVTAVQFTAR-------------GNVLLSSS------------  411 (893)
T ss_pred             ECCCCcEEEeccCCCcEEEEecc-CceEEEEeccCCCceEEEEEEec-------------CCEEEEee------------
Confidence            345799999999998 9999995 68899999999999999998742             22443322            


Q ss_pred             cCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCE--EEEEecC--CeEEEEeCC--eEEEEECCCCce
Q 004255          150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV--CMVRCSP--RIVAVGLAT--QIYCFDALTLEN  223 (765)
Q Consensus       150 ~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V--~sV~~s~--~~LaV~~~~--~I~iwD~~t~~~  223 (765)
                                           .+++||.||++....-+++..+.++  .+|+..+  .+|++|..+  .|++|+++||++
T Consensus       412 ---------------------LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql  470 (893)
T KOG0291|consen  412 ---------------------LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL  470 (893)
T ss_pred             ---------------------cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence                                 2479999999999999999998877  3555554  666666555  499999999999


Q ss_pred             eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhh
Q 004255          224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK  303 (765)
Q Consensus       224 l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k  303 (765)
                      +..|.+|..|             +..++|+|                                  .+.            
T Consensus       471 lDiLsGHEgP-------------Vs~l~f~~----------------------------------~~~------------  491 (893)
T KOG0291|consen  471 LDILSGHEGP-------------VSGLSFSP----------------------------------DGS------------  491 (893)
T ss_pred             eehhcCCCCc-------------ceeeEEcc----------------------------------ccC------------
Confidence            9999998775             12234432                                  101            


Q ss_pred             hhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCC
Q 004255          304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGT  382 (765)
Q Consensus       304 ~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~-~i~~~~aH~~~IsaLaFSpdG~  382 (765)
                                                           .+++++-|.+|++||+-... .+.+| .+.+.+.+++|+|||+
T Consensus       492 -------------------------------------~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  492 -------------------------------------LLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGK  533 (893)
T ss_pred             -------------------------------------eEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCC
Confidence                                                 01234567899999986543 33344 4567899999999999


Q ss_pred             EEEEEEcCCCEEEEEeCCCCccc-CCCCCCccccCCcc--eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255          383 LLVTASVYGNNINIFRIMPSCMR-SGSGNHKYDWNSSH--VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       383 lLATaS~dGt~IrVWdi~~~~~~-~~sG~~~~~~~~s~--~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwd  459 (765)
                      -||.+..||. |.+||+...... +-.|..  +..+..  .....-+.......++.|++|+||.+|.+|+....|.||+
T Consensus       534 elaVaTldgq-Itf~d~~~~~q~~~Idgrk--D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~  610 (893)
T KOG0291|consen  534 ELAVATLDGQ-ITFFDIKEAVQVGSIDGRK--DLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD  610 (893)
T ss_pred             eEEEEEecce-EEEEEhhhceeeccccchh--hccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence            9999999775 999998753211 111110  000000  0001111011113589999999999999999999999999


Q ss_pred             CCCCCC
Q 004255          460 LSPFGG  465 (765)
Q Consensus       460 l~~~gg  465 (765)
                      +...--
T Consensus       611 v~~~vl  616 (893)
T KOG0291|consen  611 VPEGVL  616 (893)
T ss_pred             Cchhhe
Confidence            986433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.7e-17  Score=189.74  Aligned_cols=260  Identities=15%  Similarity=0.180  Sum_probs=179.7

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .+-.++++--+| ||+||.- -+.+.+-+..|||||+.|.|-|             .+||.  |+|++            
T Consensus        20 ~rPwILtslHsG~IQlWDYR-M~tli~rFdeHdGpVRgv~FH~-------------~qplF--VSGGD------------   71 (1202)
T KOG0292|consen   20 KRPWILTSLHSGVIQLWDYR-MGTLIDRFDEHDGPVRGVDFHP-------------TQPLF--VSGGD------------   71 (1202)
T ss_pred             CCCEEEEeecCceeeeehhh-hhhHHhhhhccCCccceeeecC-------------CCCeE--EecCC------------
Confidence            466888888887 9999994 6778888999999999999775             46776  44432            


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCC--eEEEEeC-CeEEEEECCCCceeEEEE
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGLA-TQIYCFDALTLENKFSVL  228 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~--~LaV~~~-~~I~iwD~~t~~~l~tl~  228 (765)
                                         +-+|++|+.++.+++-+|..| +-|..+.|.+.  .|+++.| .+|+||+-.+.+++-++.
T Consensus        72 -------------------DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt  132 (1202)
T KOG0292|consen   72 -------------------DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT  132 (1202)
T ss_pred             -------------------ccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence                               359999999999999999876 79999999983  5666555 569999999999999998


Q ss_pred             ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhh
Q 004255          229 TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA  306 (765)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la  306 (765)
                      +|--=             +-+..|.|  ..+++++-+-     .++.||.-                             
T Consensus       133 GHnHY-------------VMcAqFhptEDlIVSaSLDQ-----TVRVWDis-----------------------------  165 (1202)
T KOG0292|consen  133 GHNHY-------------VMCAQFHPTEDLIVSASLDQ-----TVRVWDIS-----------------------------  165 (1202)
T ss_pred             cCceE-------------EEeeccCCccceEEEecccc-----eEEEEeec-----------------------------
Confidence            76430             11234555  5666665431     22233321                             


Q ss_pred             cccceeecccccccCCCCCCCCccCCCccccccccc---cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCE
Q 004255          307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG---ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTL  383 (765)
Q Consensus       307 ~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~---~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~l  383 (765)
                       |+.|.       ..+++     +...  .+.+.++   ..+..|-.          +...+.+|+-.|+.++|+|.--+
T Consensus       166 -GLRkk-------~~~pg-----~~e~--~~~~~~~~~dLfg~~DaV----------VK~VLEGHDRGVNwaAfhpTlpl  220 (1202)
T KOG0292|consen  166 -GLRKK-------NKAPG-----SLED--QMRGQQGNSDLFGQTDAV----------VKHVLEGHDRGVNWAAFHPTLPL  220 (1202)
T ss_pred             -chhcc-------CCCCC-----Cchh--hhhccccchhhcCCcCee----------eeeeecccccccceEEecCCcce
Confidence             11100       00000     0000  0000000   01111222          23457899999999999999999


Q ss_pred             EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          384 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       384 LATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      +++|++ |..|++|.....               ..+.+-.+ ||+. ..|.++-|+|....|.+.|.|++|+|||++..
T Consensus       221 iVSG~D-DRqVKlWrmnet---------------KaWEvDtc-rgH~-nnVssvlfhp~q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  221 IVSGAD-DRQVKLWRMNET---------------KAWEVDTC-RGHY-NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             EEecCC-cceeeEEEeccc---------------cceeehhh-hccc-CCcceEEecCccceeEecCCCccEEEEecccc
Confidence            999998 677999998431               12444344 6765 46999999999999999999999999999998


Q ss_pred             CCCcccc
Q 004255          464 GGDSGFQ  470 (765)
Q Consensus       464 gg~~~~~  470 (765)
                      .+..+++
T Consensus       283 t~v~tfr  289 (1202)
T KOG0292|consen  283 TSVQTFR  289 (1202)
T ss_pred             cceeeee
Confidence            8877764

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.77  E-value=2.8e-17  Score=173.21  Aligned_cols=223  Identities=17%  Similarity=0.250  Sum_probs=179.0

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      .+.+++|..++ ++|||+ .+|.+.-+|-+|-..|+.|++++             .+|+|.. +++              
T Consensus       163 n~wf~tgs~DrtikIwDl-atg~LkltltGhi~~vr~vavS~-------------rHpYlFs-~ge--------------  213 (460)
T KOG0285|consen  163 NEWFATGSADRTIKIWDL-ATGQLKLTLTGHIETVRGVAVSK-------------RHPYLFS-AGE--------------  213 (460)
T ss_pred             ceeEEecCCCceeEEEEc-ccCeEEEeecchhheeeeeeecc-------------cCceEEE-ecC--------------
Confidence            67999999886 999999 57889889999999999999884             4788754 332              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                                        ++.|+-|||..++.|+.+-.+ +.|++++..|  ++|+.|. |..|++||++|-...+++.+
T Consensus       214 ------------------dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G  275 (460)
T KOG0285|consen  214 ------------------DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG  275 (460)
T ss_pred             ------------------CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence                              368999999999999888765 8999999998  6777655 55799999999999999999


Q ss_pred             cCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccc
Q 004255          230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL  309 (765)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~  309 (765)
                      |.+|.             ..+.+      -+.++                                              
T Consensus       276 H~~~V-------------~~V~~------~~~dp----------------------------------------------  290 (460)
T KOG0285|consen  276 HTNPV-------------ASVMC------QPTDP----------------------------------------------  290 (460)
T ss_pred             CCCcc-------------eeEEe------ecCCC----------------------------------------------
Confidence            88851             11111      11110                                              


Q ss_pred             ceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 004255          310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV  389 (765)
Q Consensus       310 ~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~  389 (765)
                                                     ++.+++.|++|++||+..++...++..|...|.|++.+|.-.++|+||.
T Consensus       291 -------------------------------qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  291 -------------------------------QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             -------------------------------ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence                                           1224578999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       390 dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      |  .|+-|++-.       |          ..+..+. | +++.|.+++...|| ++++|+++|++..||...
T Consensus       340 d--nik~w~~p~-------g----------~f~~nls-g-h~~iintl~~nsD~-v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  340 D--NIKQWKLPE-------G----------EFLQNLS-G-HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             c--cceeccCCc-------c----------chhhccc-c-ccceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence            4  399999832       3          3444443 4 45779999999887 778999999999999876

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=2.8e-17  Score=185.88  Aligned_cols=225  Identities=20%  Similarity=0.289  Sum_probs=178.6

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      .+.+++|+++| ++|||+. +..+.|+...|+|.+..|+.+|+.            +-++ .++                
T Consensus       424 d~~Iv~G~k~Gel~vfdla-S~~l~Eti~AHdgaIWsi~~~pD~------------~g~v-T~s----------------  473 (888)
T KOG0306|consen  424 DRYIVLGTKNGELQVFDLA-SASLVETIRAHDGAIWSISLSPDN------------KGFV-TGS----------------  473 (888)
T ss_pred             CceEEEeccCCceEEEEee-hhhhhhhhhccccceeeeeecCCC------------CceE-Eec----------------
Confidence            57899999998 9999995 566778888999999999999862            1232 211                


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCC-----CeE--------EEEEeCCCCEEEEEecC--CeEEEEe-CCeEEEEE
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQS-----HCY--------EHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFD  217 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlkt-----g~~--------v~tL~~~s~V~sV~~s~--~~LaV~~-~~~I~iwD  217 (765)
                                       .+++|+|||++-     |..        -++|++...|++|+++|  ++|||++ +++|++|.
T Consensus       474 -----------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyf  536 (888)
T KOG0306|consen  474 -----------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF  536 (888)
T ss_pred             -----------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence                             247999999752     221        24677889999999997  8999987 66899999


Q ss_pred             CCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeee
Q 004255          218 ALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY  297 (765)
Q Consensus       218 ~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~  297 (765)
                      +.|++-.-+|.+|..|             +.+|.++|.     + .                                  
T Consensus       537 lDtlKFflsLYGHkLP-------------V~smDIS~D-----S-k----------------------------------  563 (888)
T KOG0306|consen  537 LDTLKFFLSLYGHKLP-------------VLSMDISPD-----S-K----------------------------------  563 (888)
T ss_pred             ecceeeeeeecccccc-------------eeEEeccCC-----c-C----------------------------------
Confidence            9999988899999886             245555330     0 0                                  


Q ss_pred             hhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 004255          298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF  377 (765)
Q Consensus       298 a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaF  377 (765)
                                                                 .+++++.|..|+||-+.=|.|-..|-||+..|.++.|
T Consensus       564 -------------------------------------------livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F  600 (888)
T KOG0306|consen  564 -------------------------------------------LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF  600 (888)
T ss_pred             -------------------------------------------eEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence                                                       0124567889999999999999999999999999999


Q ss_pred             CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255          378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV  457 (765)
Q Consensus       378 SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhI  457 (765)
                      -|+..++.||+.|+. |+-||-..                 ..++.+|. |++ ..|+|++-+|+|.+++++|.|.+|++
T Consensus       601 ~P~~~~FFt~gKD~k-vKqWDg~k-----------------Fe~iq~L~-~H~-~ev~cLav~~~G~~vvs~shD~sIRl  660 (888)
T KOG0306|consen  601 LPKTHLFFTCGKDGK-VKQWDGEK-----------------FEEIQKLD-GHH-SEVWCLAVSPNGSFVVSSSHDKSIRL  660 (888)
T ss_pred             cccceeEEEecCcce-EEeechhh-----------------hhhheeec-cch-heeeeeEEcCCCCeEEeccCCceeEe
Confidence            999999999999665 99999532                 24666675 444 57999999999999999999999999


Q ss_pred             EeCCC
Q 004255          458 FVLSP  462 (765)
Q Consensus       458 wdl~~  462 (765)
                      |.-..
T Consensus       661 wE~td  665 (888)
T KOG0306|consen  661 WERTD  665 (888)
T ss_pred             eeccC
Confidence            98754

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.76  E-value=2.7e-17  Score=187.63  Aligned_cols=182  Identities=14%  Similarity=0.139  Sum_probs=139.9

Q ss_pred             EEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeE
Q 004255          176 RFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA  251 (765)
Q Consensus       176 ~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~A  251 (765)
                      ..-|..+.....+|-.| ++|+.++|+|  ++|+.+.+ ..|++|.+.|..++-...+|--|             ++-+.
T Consensus       434 ~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P-------------VwdV~  500 (707)
T KOG0263|consen  434 DMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP-------------VWDVQ  500 (707)
T ss_pred             hhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc-------------eeeEE
Confidence            33444444444455444 6999999998  67887776 57999999998877666666543             23344


Q ss_pred             EccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccC
Q 004255          252 VGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSP  331 (765)
Q Consensus       252 lspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~  331 (765)
                      |+|+-.                                                                          
T Consensus       501 F~P~Gy--------------------------------------------------------------------------  506 (707)
T KOG0263|consen  501 FAPRGY--------------------------------------------------------------------------  506 (707)
T ss_pred             ecCCce--------------------------------------------------------------------------
Confidence            444200                                                                          


Q ss_pred             CCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 004255          332 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH  411 (765)
Q Consensus       332 s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~  411 (765)
                               ..++++.|++.++|......++..|.+|.+.|.|++|+|+..|+||||. ++++|+||+.+       |  
T Consensus       507 ---------YFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs-D~tVRlWDv~~-------G--  567 (707)
T KOG0263|consen  507 ---------YFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS-DRTVRLWDVST-------G--  567 (707)
T ss_pred             ---------EEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCC-CceEEEEEcCC-------C--
Confidence                     1224567889999999999999999999999999999999999999999 56799999976       4  


Q ss_pred             ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                              ..+..| .|+ .++|.+|+|||+|+|||+|+.||.|+|||+....-...+++|+
T Consensus       568 --------~~VRiF-~GH-~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht  619 (707)
T KOG0263|consen  568 --------NSVRIF-TGH-KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHT  619 (707)
T ss_pred             --------cEEEEe-cCC-CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhccc
Confidence                    233333 574 4689999999999999999999999999998766666778884

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.75  E-value=1.5e-17  Score=177.71  Aligned_cols=247  Identities=16%  Similarity=0.242  Sum_probs=168.3

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .++-|++|++.| |-+|+.. .-+++-++..||.+|++|+++++             ...+  +++|.            
T Consensus       107 eGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~-------------g~wm--iSgD~------------  158 (464)
T KOG0284|consen  107 EGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHN-------------GTWM--ISGDK------------  158 (464)
T ss_pred             CCceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccC-------------CCEE--EEcCC------------
Confidence            356777888776 9999984 55677889999999999999954             2354  34543            


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CC-CCEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEE
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FR-SSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSV  227 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~-s~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl  227 (765)
                                         .+.|++|+..- ..|+.+. .+ ..|.+++|++   +++.++.++.|+|||....+....|
T Consensus       159 -------------------gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL  218 (464)
T KOG0284|consen  159 -------------------GGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL  218 (464)
T ss_pred             -------------------CceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence                               36899999854 3344444 34 5899999998   4555566678999998776655555


Q ss_pred             EecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255          228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (765)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~  307 (765)
                      .+|--             .+.++++.|       .                                            +
T Consensus       219 ~GHgw-------------dVksvdWHP-------~--------------------------------------------k  234 (464)
T KOG0284|consen  219 RGHGW-------------DVKSVDWHP-------T--------------------------------------------K  234 (464)
T ss_pred             ccCCC-------------CcceeccCC-------c--------------------------------------------c
Confidence            44321             011222221       0                                            0


Q ss_pred             ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 004255          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA  387 (765)
Q Consensus       308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATa  387 (765)
                      |                                -+++++.|..|++||.+++.++.++.+|+..|.++.|+|+|++|+|+
T Consensus       235 g--------------------------------LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~  282 (464)
T KOG0284|consen  235 G--------------------------------LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTG  282 (464)
T ss_pred             c--------------------------------eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEc
Confidence            0                                12245567799999999999999999999999999999999999999


Q ss_pred             EcCCCEEEEEeCCCCc----ccCC-CCC-------------CccccCCcceE--EE------EEecccccccEEEEEEcc
Q 004255          388 SVYGNNINIFRIMPSC----MRSG-SGN-------------HKYDWNSSHVH--LY------KLHRGITSATIQDICFSH  441 (765)
Q Consensus       388 S~dGt~IrVWdi~~~~----~~~~-sG~-------------~~~~~~~s~~~--l~------~l~rG~~~a~I~slaFSp  441 (765)
                      |. |..++|||++.-.    .+.. .-.             ++..++.+..+  +.      .+.-+ +...|++++|+|
T Consensus       283 sk-D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A-Hd~~iwsl~~hP  360 (464)
T KOG0284|consen  283 SK-DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA-HDGEIWSLAYHP  360 (464)
T ss_pred             cC-CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc-cccceeeeeccc
Confidence            99 5679999997310    0000 000             00011211111  10      11111 223599999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          442 YSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       442 Dg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      =|..||+|+.|.|++.|.-+..+..
T Consensus       361 lGhil~tgsnd~t~rfw~r~rp~d~  385 (464)
T KOG0284|consen  361 LGHILATGSNDRTVRFWTRNRPGDK  385 (464)
T ss_pred             cceeEeecCCCcceeeeccCCCCCc
Confidence            9999999999999999987765554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=5.9e-17  Score=183.31  Aligned_cols=114  Identities=14%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      ++++++|.+++||++...+...+|.+|+..|.++.|+|..++|||||.| ++|+||.+.+       .          .+
T Consensus       478 iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD-~TvKIW~is~-------f----------SC  539 (775)
T KOG0319|consen  478 IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGD-KTVKIWSIST-------F----------SC  539 (775)
T ss_pred             EEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCC-ceEEEEEecc-------c----------ee
Confidence            3467889999999999999999999999999999999999999999995 5699999965       2          47


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCC
Q 004255          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ  475 (765)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~  475 (765)
                      +.+|. |++ +.|..++|-.+|+.|++++.||-++||++++..+..++..|+..
T Consensus       540 lkT~e-GH~-~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr  591 (775)
T KOG0319|consen  540 LKTFE-GHT-SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR  591 (775)
T ss_pred             eeeec-Ccc-ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence            77775 654 56999999999999999999999999999999999999999854

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.74  E-value=4.1e-17  Score=171.97  Aligned_cols=215  Identities=15%  Similarity=0.203  Sum_probs=159.8

Q ss_pred             cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 004255           96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV  175 (765)
Q Consensus        96 ~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV  175 (765)
                      ++..++++|-|+|++|++-|-             ...++.  +.                               .++++
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~-------------n~wf~t--gs-------------------------------~Drti  175 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPG-------------NEWFAT--GS-------------------------------ADRTI  175 (460)
T ss_pred             eehhhhhhccceEEEEeeCCC-------------ceeEEe--cC-------------------------------CCcee
Confidence            455778899999999999872             125543  21                               25899


Q ss_pred             EEEECCCCeEEEEEeCC-CCEEEEEecCC--eEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeE
Q 004255          176 RFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA  251 (765)
Q Consensus       176 ~lWdlktg~~v~tL~~~-s~V~sV~~s~~--~La-V~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~A  251 (765)
                      +|||+.+|++..+|..+ ..|..|+++++  +|. ++.+.+|+|||+...+.++...+|-.             ++..++
T Consensus       176 kIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-------------~V~~L~  242 (460)
T KOG0285|consen  176 KIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-------------GVYCLD  242 (460)
T ss_pred             EEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc-------------eeEEEe
Confidence            99999999999999854 78999999973  555 45567899999988776554444432             111222


Q ss_pred             EccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccC
Q 004255          252 VGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSP  331 (765)
Q Consensus       252 lspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~  331 (765)
                      +.|      ..+                                                                    
T Consensus       243 lhP------Tld--------------------------------------------------------------------  248 (460)
T KOG0285|consen  243 LHP------TLD--------------------------------------------------------------------  248 (460)
T ss_pred             ccc------cce--------------------------------------------------------------------
Confidence            211      000                                                                    


Q ss_pred             CCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 004255          332 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH  411 (765)
Q Consensus       332 s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~  411 (765)
                               .+++++.|.+++|||+++...+..|.+|+.+|..+.|.|-.-.++|||.|+ +||+||+..       |  
T Consensus       249 ---------vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~-tvrlWDl~a-------g--  309 (460)
T KOG0285|consen  249 ---------VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS-TVRLWDLRA-------G--  309 (460)
T ss_pred             ---------eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc-eEEEeeecc-------C--
Confidence                     012456788999999999999999999999999999999888899999966 599999965       3  


Q ss_pred             ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                              +-...+.  ++...|.+++.+|+-..+|++|.|. |+-|++....-..++..|+
T Consensus       310 --------kt~~tlt--~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~  360 (460)
T KOG0285|consen  310 --------KTMITLT--HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN  360 (460)
T ss_pred             --------ceeEeee--cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc
Confidence                    2334443  2344699999999999999999886 7999997755556667775

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.74  E-value=2.3e-16  Score=181.88  Aligned_cols=242  Identities=19%  Similarity=0.189  Sum_probs=184.5

Q ss_pred             CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        51 ~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..++|++.|--..|..  .     ...|++|..+ .++|||+ ..|.|..++.+|.+.|+++.+.+              
T Consensus       244 ~l~GH~g~V~~l~~~~--~-----~~~lvsgS~D~t~rvWd~-~sg~C~~~l~gh~stv~~~~~~~--------------  301 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPS--G-----GDKLVSGSTDKTERVWDC-STGECTHSLQGHTSSVRCLTIDP--------------  301 (537)
T ss_pred             eccCCCCCceeEEEec--C-----CCEEEEEecCCcEEeEec-CCCcEEEEecCCCceEEEEEccC--------------
Confidence            4677777776666654  1     3478888865 5999997 57999999999999999998774              


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCEEEEEecCCeEEEE
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVG  208 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~~~LaV~  208 (765)
                        .+. ++|                     +          -|++|++|++.++.+++++. +..+|.+|.++..+|++|
T Consensus       302 --~~~-~sg---------------------s----------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsg  347 (537)
T KOG0274|consen  302 --FLL-VSG---------------------S----------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSG  347 (537)
T ss_pred             --ceE-eec---------------------c----------CCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEE
Confidence              232 232                     1          25799999999999999999 668999999999877765


Q ss_pred             e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255          209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (765)
Q Consensus       209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s  287 (765)
                      . ++.|.+||+.++++++++.+|...             +.++.+       .+...                       
T Consensus       348 s~d~~v~VW~~~~~~cl~sl~gH~~~-------------V~sl~~-------~~~~~-----------------------  384 (537)
T KOG0274|consen  348 SYDGTVKVWDPRTGKCLKSLSGHTGR-------------VYSLIV-------DSENR-----------------------  384 (537)
T ss_pred             ecCceEEEEEhhhceeeeeecCCcce-------------EEEEEe-------cCcce-----------------------
Confidence            5 567999999999999999987762             122222       11000                       


Q ss_pred             CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEec
Q 004255          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFK  366 (765)
Q Consensus       288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~  366 (765)
                                                                            ..++..|++|++||+.++ +++.++.
T Consensus       385 ------------------------------------------------------~~Sgs~D~~IkvWdl~~~~~c~~tl~  410 (537)
T KOG0274|consen  385 ------------------------------------------------------LLSGSLDTTIKVWDLRTKRKCIHTLQ  410 (537)
T ss_pred             ------------------------------------------------------EEeeeeccceEeecCCchhhhhhhhc
Confidence                                                                  012346789999999999 9999999


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (765)
Q Consensus       367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (765)
                      +|.+-+..+.+  .+++|++++.|++ |++||+..       +          .++..+... +...|..+++.  ...+
T Consensus       411 ~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~-------~----------~~~~~~~~~-~~~~v~~l~~~--~~~i  467 (537)
T KOG0274|consen  411 GHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEE-------G----------ECLRTLEGR-HVGGVSALALG--KEEI  467 (537)
T ss_pred             CCccccccccc--ccceeEecccccc-EEEeeccc-------C----------ceeeeeccC-CcccEEEeecC--cceE
Confidence            99998866655  6789999999775 99999866       3          466666532 33568888887  4678


Q ss_pred             EEEeCCCcEEEEeCCCCCCCcc
Q 004255          447 AIVSSKGTCHVFVLSPFGGDSG  468 (765)
Q Consensus       447 as~S~dgTVhIwdl~~~gg~~~  468 (765)
                      ++++.|+++++||+........
T Consensus       468 l~s~~~~~~~l~dl~~~~~~~~  489 (537)
T KOG0274|consen  468 LCSSDDGSVKLWDLRSGTLIRT  489 (537)
T ss_pred             EEEecCCeeEEEecccCchhhh
Confidence            8999999999999987655443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.74  E-value=2.9e-17  Score=166.43  Aligned_cols=198  Identities=21%  Similarity=0.303  Sum_probs=152.3

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      -.+|--|.-+.|++    |   .+.|++|...- +||||++......+-+++|.|.|+.+.++-           .++  
T Consensus        97 f~hkhivk~~af~~----d---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-----------eD~--  156 (334)
T KOG0278|consen   97 FEHKHIVKAVAFSQ----D---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-----------EDK--  156 (334)
T ss_pred             hhhhheeeeEEecc----c---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-----------cCc--
Confidence            34677788889988    3   34566666654 899999877766777899999999999882           122  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL  209 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~  209 (765)
                      .++. +.                                .+++||+||.++|..+++|.|+++|.++.+++  ++|.++.
T Consensus       157 ~iLS-Sa--------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~  203 (334)
T KOG0278|consen  157 CILS-SA--------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY  203 (334)
T ss_pred             eEEe-ec--------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec
Confidence            4433 12                                14799999999999999999999999888876  8999999


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCC
Q 004255          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG  289 (765)
Q Consensus       210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~  289 (765)
                      ...|.+||+.+++++....   .|.         |  +.+.+|.|                                  .
T Consensus       204 gssV~Fwdaksf~~lKs~k---~P~---------n--V~SASL~P----------------------------------~  235 (334)
T KOG0278|consen  204 GSSVKFWDAKSFGLLKSYK---MPC---------N--VESASLHP----------------------------------K  235 (334)
T ss_pred             CceeEEeccccccceeecc---Ccc---------c--cccccccC----------------------------------C
Confidence            8999999999998766543   321         1  11122211                                  1


Q ss_pred             CCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe-ccC
Q 004255          290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAH  368 (765)
Q Consensus       290 ~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~-~aH  368 (765)
                      .+.+                                                 +.++.|+.+..||..++..+..+ ++|
T Consensus       236 k~~f-------------------------------------------------VaGged~~~~kfDy~TgeEi~~~nkgh  266 (334)
T KOG0278|consen  236 KEFF-------------------------------------------------VAGGEDFKVYKFDYNTGEEIGSYNKGH  266 (334)
T ss_pred             CceE-------------------------------------------------EecCcceEEEEEeccCCceeeecccCC
Confidence            1111                                                 23567899999999999999886 899


Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~  401 (765)
                      -+||.|+.|+|||.+.|++|+||+ ||||.+.+
T Consensus       267 ~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~  298 (334)
T KOG0278|consen  267 FGPVHCVRFSPDGELYASGSEDGT-IRLWQTTP  298 (334)
T ss_pred             CCceEEEEECCCCceeeccCCCce-EEEEEecC
Confidence            999999999999999999999886 99999866

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.74  E-value=5.4e-16  Score=160.33  Aligned_cols=224  Identities=14%  Similarity=0.140  Sum_probs=171.6

Q ss_pred             CCCeEEEEEecCc-EEEEEccCC---C--cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCC
Q 004255           73 VFKQVLLLGYQNG-FQVLDVEDA---S--NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAP  146 (765)
Q Consensus        73 ~~~~vL~~G~~~G-~qVWdv~~~---g--~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~  146 (765)
                      +.++.++.|.-+. --||++...   +  .+.+.|.+|.|-+.+.+++++             . .|+.  +     +| 
T Consensus       107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-------------~-~ilT--~-----SG-  164 (343)
T KOG0286|consen  107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-------------N-HILT--G-----SG-  164 (343)
T ss_pred             CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-------------C-ceEe--c-----CC-
Confidence            3578888888665 689999633   1  355668899999999999964             1 2333  2     11 


Q ss_pred             CCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEE-EeCCeEEEEECCCC
Q 004255          147 GQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAV-GLATQIYCFDALTL  221 (765)
Q Consensus       147 ~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV-~~~~~I~iwD~~t~  221 (765)
                                               +.|..+||+++|+.+..+..| +-|.++.+.|   +.++. +.+...++||++.+
T Consensus       165 -------------------------D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~  219 (343)
T KOG0286|consen  165 -------------------------DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG  219 (343)
T ss_pred             -------------------------CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence                                     368999999999999999876 5899999877   66665 45678999999999


Q ss_pred             ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhh
Q 004255          222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH  301 (765)
Q Consensus       222 ~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~  301 (765)
                      .+.+++.+|..         ++    +.+.|-|                                  +|.          
T Consensus       220 ~c~qtF~ghes---------DI----Nsv~ffP----------------------------------~G~----------  242 (343)
T KOG0286|consen  220 QCVQTFEGHES---------DI----NSVRFFP----------------------------------SGD----------  242 (343)
T ss_pred             ceeEeeccccc---------cc----ceEEEcc----------------------------------CCC----------
Confidence            99999988765         22    3333311                                  111          


Q ss_pred             hhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEECC
Q 004255          302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFDP  379 (765)
Q Consensus       302 ~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH--~~~IsaLaFSp  379 (765)
                                                             ..++++.|+++++||++..+.+..+...  ..+|++++||-
T Consensus       243 ---------------------------------------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  243 ---------------------------------------AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             ---------------------------------------eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence                                                   1235678999999999999998888632  45899999999


Q ss_pred             CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255          380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       380 dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwd  459 (765)
                      +|++|..+-.|. ++.|||...       +          .++-.|. |+. ..|.+|..+|||.-|++||-|.+++||.
T Consensus       284 SGRlLfagy~d~-~c~vWDtlk-------~----------e~vg~L~-GHe-NRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  284 SGRLLFAGYDDF-TCNVWDTLK-------G----------ERVGVLA-GHE-NRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccEEEeeecCC-ceeEeeccc-------c----------ceEEEee-ccC-CeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999987754 599999865       3          4555664 543 5799999999999999999999999994

>PTZ00421 coronin; Provisional

Probab=99.73  E-value=2.3e-15  Score=172.86  Aligned_cols=222  Identities=14%  Similarity=0.113  Sum_probs=152.6

Q ss_pred             CcEEEEEccCCCcceE---eeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCC
Q 004255           84 NGFQVLDVEDASNFNE---LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGM  160 (765)
Q Consensus        84 ~G~qVWdv~~~g~~~e---lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~  160 (765)
                      +|+.|+.++..|....   ++.+|.++|..+++.|          |...  +||+.+                       
T Consensus        51 gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP----------~d~~--~LaSgS-----------------------   95 (493)
T PTZ00421         51 GSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNP----------FDPQ--KLFTAS-----------------------   95 (493)
T ss_pred             CceEEeeccccccCCCCCceEeCCCCCEEEEEEcC----------CCCC--EEEEEe-----------------------
Confidence            3455555555554443   6788999999999997          2122  665422                       


Q ss_pred             cCCCCCCCCCCCCEEEEEECCCC-------eEEEEEeCC-CCEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEE
Q 004255          161 MDSQSGNCVNSPTAVRFYSFQSH-------CYEHVLRFR-SSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVL  228 (765)
Q Consensus       161 ~~~~~~~~~~~p~tV~lWdlktg-------~~v~tL~~~-s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~  228 (765)
                                .+++|++||+.++       +.+..|..+ ..|..|+|+|   ++|+++. ++.|+|||+.+++.+.++.
T Consensus        96 ----------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~  165 (493)
T PTZ00421         96 ----------EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK  165 (493)
T ss_pred             ----------CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence                      1369999999765       346677655 5899999987   4677654 6689999999998877776


Q ss_pred             ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255          229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (765)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G  308 (765)
                      .|..+             ...++++|       +.                            .                
T Consensus       166 ~h~~~-------------V~sla~sp-------dG----------------------------~----------------  181 (493)
T PTZ00421        166 CHSDQ-------------ITSLEWNL-------DG----------------------------S----------------  181 (493)
T ss_pred             CCCCc-------------eEEEEEEC-------CC----------------------------C----------------
Confidence            66542             12333322       10                            0                


Q ss_pred             cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCe-EEEEECCCCCEEEEE
Q 004255          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI-SALCFDPSGTLLVTA  387 (765)
Q Consensus       309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~I-saLaFSpdG~lLATa  387 (765)
                                                      .+++++.||+|+|||+.+++.+..+.+|.+.+ ..+.|.+++.+|+|+
T Consensus       182 --------------------------------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        182 --------------------------------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             --------------------------------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence                                            01234578999999999999999999998764 567899998888876


Q ss_pred             Ec---CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC
Q 004255          388 SV---YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF  463 (765)
Q Consensus       388 S~---dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~  463 (765)
                      +.   .++.|+|||++..      .          ..+.... ......+....|++|+++|++++ .|++|++||+...
T Consensus       230 G~s~s~Dr~VklWDlr~~------~----------~p~~~~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKM------A----------SPYSTVD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             ecCCCCCCeEEEEeCCCC------C----------CceeEec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            53   2456999998541      1          1222221 11223466778999999999888 4999999999753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.73  E-value=3.7e-16  Score=180.17  Aligned_cols=228  Identities=14%  Similarity=0.138  Sum_probs=170.9

Q ss_pred             EEEEEecC-cEEEEEccCCCcceEe-eeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255           77 VLLLGYQN-GFQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (765)
Q Consensus        77 vL~~G~~~-G~qVWdv~~~g~~~el-ls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~  154 (765)
                      .+..|..+ .+++||+. .+.+... +.+|.|.|..++|.             .-.++|..  |.               
T Consensus       220 ~~~~~s~~~tl~~~~~~-~~~~i~~~l~GH~g~V~~l~~~-------------~~~~~lvs--gS---------------  268 (537)
T KOG0274|consen  220 FFKSGSDDSTLHLWDLN-NGYLILTRLVGHFGGVWGLAFP-------------SGGDKLVS--GS---------------  268 (537)
T ss_pred             eEEecCCCceeEEeecc-cceEEEeeccCCCCCceeEEEe-------------cCCCEEEE--Ee---------------
Confidence            45566555 48899995 4656666 89999999999986             11235543  31               


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEE-EeCCeEEEEECCCCceeEEEEecCC
Q 004255          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAV-GLATQIYCFDALTLENKFSVLTYPV  232 (765)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV-~~~~~I~iwD~~t~~~l~tl~t~p~  232 (765)
                                      .+.++++||..+|+++++|..+ +.|..+...+..++. +.|.+|++||+.++.+++++.+|..
T Consensus       269 ----------------~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~  332 (537)
T KOG0274|consen  269 ----------------TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG  332 (537)
T ss_pred             ----------------cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccc
Confidence                            2479999999999999999966 577888887776666 4677899999999999999887655


Q ss_pred             cccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255          233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (765)
Q Consensus       233 p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt  312 (765)
                      +             +..+.+       .. +                                                 
T Consensus       333 ~-------------V~~v~~-------~~-~-------------------------------------------------  342 (537)
T KOG0274|consen  333 P-------------VNCVQL-------DE-P-------------------------------------------------  342 (537)
T ss_pred             c-------------EEEEEe-------cC-C-------------------------------------------------
Confidence            3             111221       11 0                                                 


Q ss_pred             ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 004255          313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN  392 (765)
Q Consensus       313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt  392 (765)
                                                  .+.++..||+|+|||+.++++++.+.+|+..|.++.|+.. ..+.+||.| +
T Consensus       343 ----------------------------~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D-~  392 (537)
T KOG0274|consen  343 ----------------------------LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD-T  392 (537)
T ss_pred             ----------------------------EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec-c
Confidence                                        0123567899999999999999999999999999999876 899999996 5


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccc
Q 004255          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT  471 (765)
Q Consensus       393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~  471 (765)
                      .|++||+...       .         .+++.|. | +.+.+.++.  ..+++|.+++.|++|++||++..+....+.+
T Consensus       393 ~IkvWdl~~~-------~---------~c~~tl~-~-h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  393 TIKVWDLRTK-------R---------KCIHTLQ-G-HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             ceEeecCCch-------h---------hhhhhhc-C-Ccccccccc--cccceeEeccccccEEEeecccCceeeeecc
Confidence            6999999641       0         2455553 3 334455544  4578999999999999999999887766555

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.73  E-value=8.5e-17  Score=172.31  Aligned_cols=224  Identities=16%  Similarity=0.222  Sum_probs=165.8

Q ss_pred             CCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      .+.+|+.++++..++|+++ ...++.+|++|.+.|.++++.-.           ++    .+|++.              
T Consensus       231 ~~~~iAas~d~~~r~Wnvd-~~r~~~TLsGHtdkVt~ak~~~~-----------~~----~vVsgs--------------  280 (459)
T KOG0288|consen  231 NKHVIAASNDKNLRLWNVD-SLRLRHTLSGHTDKVTAAKFKLS-----------HS----RVVSGS--------------  280 (459)
T ss_pred             CceEEeecCCCceeeeecc-chhhhhhhcccccceeeehhhcc-----------cc----ceeecc--------------
Confidence            4678888888889999996 57788999999999999997631           22    234431              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCC
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPV  232 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~  232 (765)
                                       .+++|++||+....|.+++-+-+.+.+|.++...++.+- +++|++||+++..+..++..+..
T Consensus       281 -----------------~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~  343 (459)
T KOG0288|consen  281 -----------------ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGR  343 (459)
T ss_pred             -----------------ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcc
Confidence                             258999999999999999999999999999977777764 56799999998877666543211


Q ss_pred             cccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255          233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (765)
Q Consensus       233 p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt  312 (765)
                                    ..++.++.                                  ++-                     
T Consensus       344 --------------vtSl~ls~----------------------------------~g~---------------------  354 (459)
T KOG0288|consen  344 --------------VTSLDLSM----------------------------------DGL---------------------  354 (459)
T ss_pred             --------------eeeEeecc----------------------------------CCe---------------------
Confidence                          12233321                                  000                     


Q ss_pred             ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC----CCCeEEEEECCCCCEEEEEE
Q 004255          313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH----TSPISALCFDPSGTLLVTAS  388 (765)
Q Consensus       313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH----~~~IsaLaFSpdG~lLATaS  388 (765)
                                                  .+.+...|.++.+.|+.+.++...|.+-    .+..+.+.|||+|.|+|+||
T Consensus       355 ----------------------------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS  406 (459)
T KOG0288|consen  355 ----------------------------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS  406 (459)
T ss_pred             ----------------------------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence                                        0001134567888888888877777642    23478999999999999999


Q ss_pred             cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255          389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       389 ~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwd  459 (765)
                      .||. |.||++.+       |          .....+.....++.|.+++|+|-|.+|++++.++++.+|.
T Consensus       407 ~dgs-v~iW~v~t-------g----------KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  407 ADGS-VYIWSVFT-------G----------KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CCCc-EEEEEccC-------c----------eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            9886 99999965       3          3444554332333699999999999999999999999993

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.71  E-value=9.3e-16  Score=167.35  Aligned_cols=235  Identities=20%  Similarity=0.257  Sum_probs=167.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ...-++.+.-+.|-+       ++++|+.|...| +||||. .+......+..|+.||..++|.|.           ++ 
T Consensus        64 ~srFk~~v~s~~fR~-------DG~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~-----------d~-  123 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRS-------DGRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQ-----------DN-  123 (487)
T ss_pred             HHhhccceeEEEeec-------CCeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEeccc-----------CC-
Confidence            344566677777755       478999999988 899995 445567788899999999999873           22 


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVA  206 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~La  206 (765)
                       .++ ++|++                               +.++++||+.+......+..+ +.|.+.++++   .+++
T Consensus       124 -t~l-~s~sD-------------------------------d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv  170 (487)
T KOG0310|consen  124 -TML-VSGSD-------------------------------DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV  170 (487)
T ss_pred             -eEE-EecCC-------------------------------CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence             334 34433                               379999999988865566654 6899999987   3677


Q ss_pred             EE-eCCeEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCCccccCCCCCCCCCC
Q 004255          207 VG-LATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (765)
Q Consensus       207 V~-~~~~I~iwD~~t~-~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~~~G~~s~~~lt~~~~s  283 (765)
                      +| .|+.|++||+++. ....++. |..|.            -..+++.+ ..+|+++                      
T Consensus       171 tGsYDg~vrl~DtR~~~~~v~eln-hg~pV------------e~vl~lpsgs~iasAg----------------------  215 (487)
T KOG0310|consen  171 TGSYDGKVRLWDTRSLTSRVVELN-HGCPV------------ESVLALPSGSLIASAG----------------------  215 (487)
T ss_pred             ecCCCceEEEEEeccCCceeEEec-CCCce------------eeEEEcCCCCEEEEcC----------------------
Confidence            65 5678999999876 3333333 22220            01223321 1111111                      


Q ss_pred             CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEE
Q 004255          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AII  362 (765)
Q Consensus       284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i  362 (765)
                                                                                      ...|+|||+.+| +.+
T Consensus       216 ----------------------------------------------------------------Gn~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  216 ----------------------------------------------------------------GNSVKVWDLTTGGQLL  231 (487)
T ss_pred             ----------------------------------------------------------------CCeEEEEEecCCceeh
Confidence                                                                            126999999965 455


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (765)
Q Consensus       363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (765)
                      ..+..|...|+||+|..+++.|.++|-|++ ++|||+...                 ..++.+.   -.++|.+|+.|||
T Consensus       232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~-----------------Kvv~s~~---~~~pvLsiavs~d  290 (487)
T KOG0310|consen  232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNY-----------------KVVHSWK---YPGPVLSIAVSPD  290 (487)
T ss_pred             hhhhcccceEEEEEeecCCceEeecccccc-eEEEEccce-----------------EEEEeee---cccceeeEEecCC
Confidence            555569999999999999999999999886 999997431                 2344432   2467999999999


Q ss_pred             CCEEEEEeCCCcEEEEe
Q 004255          443 SQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       443 g~~Las~S~dgTVhIwd  459 (765)
                      ++.+++|-.+|.+-+=+
T Consensus       291 d~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  291 DQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             CceEEEecccceeeeeh
Confidence            99999999999987653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.9e-16  Score=176.19  Aligned_cols=223  Identities=13%  Similarity=0.126  Sum_probs=163.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCC-CEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (765)
                      +.|.|||..|..+|++++... +|.+.+|=.  +.+++|.|+ +|++|+..|++..+++..|+.=             ..
T Consensus        35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy-------------IR  101 (794)
T KOG0276|consen   35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY-------------IR  101 (794)
T ss_pred             CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc-------------ee
Confidence            589999999999999998754 888888754  688887765 7999999999999999988861             24


Q ss_pred             eeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255          249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (765)
Q Consensus       249 ~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~  326 (765)
                      .+++.|  -++-+++++..+     ..|+.-....                           +.+++.+|..-+.     
T Consensus       102 ~iavHPt~P~vLtsSDDm~i-----KlW~we~~wa---------------------------~~qtfeGH~HyVM-----  144 (794)
T KOG0276|consen  102 SIAVHPTLPYVLTSSDDMTI-----KLWDWENEWA---------------------------CEQTFEGHEHYVM-----  144 (794)
T ss_pred             eeeecCCCCeEEecCCccEE-----EEeeccCcee---------------------------eeeEEcCcceEEE-----
Confidence            577777  466666665322     1111111000                           0033333322111     


Q ss_pred             CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC--CEEEEEEcCCCEEEEEeCCCCcc
Q 004255          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRIMPSCM  404 (765)
Q Consensus       327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG--~lLATaS~dGt~IrVWdi~~~~~  404 (765)
                       ...+||   .+..+.++++-|++|+||.+.+..+..+|++|...|+|+.|=+-|  -+|+||++ |.+|+|||.++-  
T Consensus       145 -qv~fnP---kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD-D~tiKvWDyQtk--  217 (794)
T KOG0276|consen  145 -QVAFNP---KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD-DLTIKVWDYQTK--  217 (794)
T ss_pred             -EEEecC---CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC-CceEEEeecchH--
Confidence             111222   122345678899999999999999999999999999999998865  48999988 678999998652  


Q ss_pred             cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255          405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~  469 (765)
                                     .++.+|. |++ ..|..+.|+|.=-++++||.|||++||.-.+|..+.++
T Consensus       218 ---------------~CV~TLe-GHt-~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  218 ---------------SCVQTLE-GHT-NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL  265 (794)
T ss_pred             ---------------HHHHHhh-ccc-ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence                           4666665 554 35999999999999999999999999999988776543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=8.9e-16  Score=170.89  Aligned_cols=222  Identities=15%  Similarity=0.239  Sum_probs=171.8

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .++-+++|.+++ |+||+.+ +.+-...+..|..-++++++-|.             .|.++. +.|             
T Consensus        66 RknWiv~GsDD~~IrVfnyn-t~ekV~~FeAH~DyIR~iavHPt-------------~P~vLt-sSD-------------  117 (794)
T KOG0276|consen   66 RKNWIVTGSDDMQIRVFNYN-TGEKVKTFEAHSDYIRSIAVHPT-------------LPYVLT-SSD-------------  117 (794)
T ss_pred             ccceEEEecCCceEEEEecc-cceeeEEeeccccceeeeeecCC-------------CCeEEe-cCC-------------
Confidence            367899999997 9999995 56666789999999999999984             467654 222             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeCCC-CEEEEEecC---CeEEE-EeCCeEEEEECCCCceeEE
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRFRS-SVCMVRCSP---RIVAV-GLATQIYCFDALTLENKFS  226 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg-~~v~tL~~~s-~V~sV~~s~---~~LaV-~~~~~I~iwD~~t~~~l~t  226 (765)
                                         +-+|++||-..+ .+..+++.|+ -|..|+|||   +.+|. ++|.+|++|.+....+.+|
T Consensus       118 -------------------Dm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT  178 (794)
T KOG0276|consen  118 -------------------DMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT  178 (794)
T ss_pred             -------------------ccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee
Confidence                               358999999765 5777888765 899999999   45554 6788999999999999999


Q ss_pred             EEecCCcccCCCCccccccccceeEEccceEEEec-CCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255          227 VLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYAS-NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (765)
Q Consensus       227 l~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas-~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l  305 (765)
                      |.+|..         +    ++.+.+      |++ +.|.                                        
T Consensus       179 l~gHek---------G----VN~Vdy------y~~gdkpy----------------------------------------  199 (794)
T KOG0276|consen  179 LEGHEK---------G----VNCVDY------YTGGDKPY----------------------------------------  199 (794)
T ss_pred             eecccc---------C----cceEEe------ccCCCcce----------------------------------------
Confidence            998875         2    223332      222 1111                                        


Q ss_pred             hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 004255          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV  385 (765)
Q Consensus       306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLA  385 (765)
                                                          +.++..|-+|+|||.++..|+++|.+|+..|++++|+|.=.+++
T Consensus       200 ------------------------------------lIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii  243 (794)
T KOG0276|consen  200 ------------------------------------LISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII  243 (794)
T ss_pred             ------------------------------------EEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence                                                12456788999999999999999999999999999999999999


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV  457 (765)
Q Consensus       386 TaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhI  457 (765)
                      |||+||+ +|||...+.                 +....|.-|.  ..|+||+-.++++.+++|.+.|.|.|
T Consensus       244 sgsEDGT-vriWhs~Ty-----------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  244 SGSEDGT-VRIWNSKTY-----------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             EecCCcc-EEEecCcce-----------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE
Confidence            9999886 999997553                 1112222232  35999999999999999999987754

>PTZ00420 coronin; Provisional

Probab=99.70  E-value=1.2e-14  Score=168.38  Aligned_cols=218  Identities=11%  Similarity=0.140  Sum_probs=147.8

Q ss_pred             EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 004255           86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS  165 (765)
Q Consensus        86 ~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~  165 (765)
                      ++||+... ......+..|.++|..+++.|.          ..  .+||+.+                            
T Consensus        56 I~L~~~~r-~~~v~~L~gH~~~V~~lafsP~----------~~--~lLASgS----------------------------   94 (568)
T PTZ00420         56 IRLENQMR-KPPVIKLKGHTSSILDLQFNPC----------FS--EILASGS----------------------------   94 (568)
T ss_pred             EEeeecCC-CceEEEEcCCCCCEEEEEEcCC----------CC--CEEEEEe----------------------------
Confidence            78998854 3455678889999999999973          12  2665422                            


Q ss_pred             CCCCCCCCEEEEEECCCCe--------EEEEEeC-CCCEEEEEecC---CeEEE-EeCCeEEEEECCCCceeEEEEecCC
Q 004255          166 GNCVNSPTAVRFYSFQSHC--------YEHVLRF-RSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENKFSVLTYPV  232 (765)
Q Consensus       166 ~~~~~~p~tV~lWdlktg~--------~v~tL~~-~s~V~sV~~s~---~~LaV-~~~~~I~iwD~~t~~~l~tl~t~p~  232 (765)
                           .+++|+|||+.++.        .+..+.. ...|.+|+++|   .+|++ +.++.|+|||+.+++....+. ++.
T Consensus        95 -----~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~  168 (568)
T PTZ00420         95 -----EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK  168 (568)
T ss_pred             -----CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC
Confidence                 13699999998642        3345554 46899999998   34555 457789999999998766654 221


Q ss_pred             cccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255          233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (765)
Q Consensus       233 p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt  312 (765)
                      .             ...+++++       +                            |.+                   
T Consensus       169 ~-------------V~Slswsp-------d----------------------------G~l-------------------  181 (568)
T PTZ00420        169 K-------------LSSLKWNI-------K----------------------------GNL-------------------  181 (568)
T ss_pred             c-------------EEEEEECC-------C----------------------------CCE-------------------
Confidence            0             12233322       1                            000                   


Q ss_pred             ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEE-----EEECCCCCEEEEE
Q 004255          313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISA-----LCFDPSGTLLVTA  387 (765)
Q Consensus       313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~Isa-----LaFSpdG~lLATa  387 (765)
                                                   ++.+..|+.|+|||+.+++.+.++.+|.+.+.+     ..|++++.+|+|+
T Consensus       182 -----------------------------Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt  232 (568)
T PTZ00420        182 -----------------------------LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST  232 (568)
T ss_pred             -----------------------------EEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence                                         112346889999999999999999999886543     3467899999998


Q ss_pred             EcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          388 SVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       388 S~dG---t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      +.++   +.|+|||++..      +          ..+..+.-......+....+.++|.++++|+.|++|++|++..
T Consensus       233 G~d~~~~R~VkLWDlr~~------~----------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        233 GFSKNNMREMKLWDLKNT------T----------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             EcCCCCccEEEEEECCCC------C----------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence            8765   36999999641      1          2333322111223344455577799999999999999999965

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.70  E-value=1.5e-16  Score=168.05  Aligned_cols=278  Identities=15%  Similarity=0.160  Sum_probs=188.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..+|+|.|....-+.     . .-..+++|..+| ++|||+. .-++..++..|.|.|+.|.+..            .. 
T Consensus        62 L~gHrdGV~~lakhp-----~-~ls~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~V~Gi~v~~------------~~-  121 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHP-----N-KLSTVASGSCDGEVKIWNLS-QRECIRTFKAHEGLVRGICVTQ------------TS-  121 (433)
T ss_pred             ccccccccchhhcCc-----c-hhhhhhccccCceEEEEehh-hhhhhheeecccCceeeEEecc------------cc-
Confidence            567999988655433     1 113567777666 9999995 5678899999999999998762            11 


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG  208 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~  208 (765)
                       .+ . +|+                                +++|+.|-+.- ..++++-..+.++.|..+.  ...|++
T Consensus       122 -~~-t-vgd--------------------------------DKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTc  165 (433)
T KOG0268|consen  122 -FF-T-VGD--------------------------------DKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATC  165 (433)
T ss_pred             -eE-E-ecC--------------------------------CcceeeeeccC-Ccceeeecccccccccccccccccccc
Confidence             22 2 232                                37999998854 6889999999999998876  344444


Q ss_pred             eCCeEEEEECCCCceeEEEEe-cCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255          209 LATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (765)
Q Consensus       209 ~~~~I~iwD~~t~~~l~tl~t-~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~  284 (765)
                       .++|.|||..-...+.++.. .+.              ..++.++|   ..||++.++.     +.+..|..+..    
T Consensus       166 -Ge~i~IWD~~R~~Pv~smswG~Dt--------------i~svkfNpvETsILas~~sDr-----sIvLyD~R~~~----  221 (433)
T KOG0268|consen  166 -GEQIDIWDEQRDNPVSSMSWGADS--------------ISSVKFNPVETSILASCASDR-----SIVLYDLRQAS----  221 (433)
T ss_pred             -CceeeecccccCCccceeecCCCc--------------eeEEecCCCcchheeeeccCC-----ceEEEecccCC----
Confidence             46899999876555555543 221              12355555   6788875542     11112221110    


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEE
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIIS  363 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~  363 (765)
                                         .        |.+....+.    .+.++.||    .+.....+..|..+..||+... +++.
T Consensus       222 -------------------P--------l~KVi~~mR----TN~IswnP----eafnF~~a~ED~nlY~~DmR~l~~p~~  266 (433)
T KOG0268|consen  222 -------------------P--------LKKVILTMR----TNTICWNP----EAFNFVAANEDHNLYTYDMRNLSRPLN  266 (433)
T ss_pred             -------------------c--------cceeeeecc----ccceecCc----cccceeeccccccceehhhhhhcccch
Confidence                               0        000000011    12233333    3334557889999999999875 4677


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (765)
Q Consensus       364 ~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (765)
                      ..++|.+.|..+.|||.|+-++|||- |++||||.+..       |        .-+.+|.-+|-   ..|.|+.||.|+
T Consensus       267 v~~dhvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~-------~--------~SRdiYhtkRM---q~V~~Vk~S~Ds  327 (433)
T KOG0268|consen  267 VHKDHVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNH-------G--------HSRDIYHTKRM---QHVFCVKYSMDS  327 (433)
T ss_pred             hhcccceeEEEeccCCCcchhccccc-cceEEEeecCC-------C--------cchhhhhHhhh---heeeEEEEeccc
Confidence            88999999999999999999999999 56799999854       2        11345544442   359999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCC
Q 004255          444 QWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl~~~  463 (765)
                      +||.+||+|+.|++|.-+..
T Consensus       328 kyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  328 KYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             cEEEecCCCcceeeeecchh
Confidence            99999999999999987653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.69  E-value=1.5e-14  Score=146.73  Aligned_cols=203  Identities=20%  Similarity=0.274  Sum_probs=148.0

Q ss_pred             EeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEE
Q 004255           99 ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFY  178 (765)
Q Consensus        99 ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lW  178 (765)
                      ..+..|.++|.++.+.|+             +.+|++...                                 ++.|++|
T Consensus         3 ~~~~~h~~~i~~~~~~~~-------------~~~l~~~~~---------------------------------~g~i~i~   36 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPD-------------GKLLATGSG---------------------------------DGTIKVW   36 (289)
T ss_pred             hHhcccCCCEEEEEEcCC-------------CCEEEEeec---------------------------------CcEEEEE
Confidence            345678899999999874             236654221                                 2689999


Q ss_pred             ECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc
Q 004255          179 SFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP  254 (765)
Q Consensus       179 dlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp  254 (765)
                      |+.+++....+..+ ..+..+.+++  +.|+++. ++.|++||+.+++.+..+..+..+             ...+.+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-------------i~~~~~~~  103 (289)
T cd00200          37 DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY-------------VSSVAFSP  103 (289)
T ss_pred             EeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc-------------EEEEEEcC
Confidence            99999888887755 5777888887  3666655 678999999987666666544321             11122211


Q ss_pred             ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCc
Q 004255          255 RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSV  334 (765)
Q Consensus       255 r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~  334 (765)
                             +.                            .+                                         
T Consensus       104 -------~~----------------------------~~-----------------------------------------  107 (289)
T cd00200         104 -------DG----------------------------RI-----------------------------------------  107 (289)
T ss_pred             -------CC----------------------------CE-----------------------------------------
Confidence                   00                            00                                         


Q ss_pred             cccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255          335 WKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD  414 (765)
Q Consensus       335 ~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~  414 (765)
                             ++.+..+|.|.+||+.+++.+..+..|..+|.+++|+|++.+|++++.+| .|++||+..       +     
T Consensus       108 -------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~-------~-----  167 (289)
T cd00200         108 -------LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG-TIKLWDLRT-------G-----  167 (289)
T ss_pred             -------EEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC-cEEEEEccc-------c-----
Confidence                   01223478999999999999999999999999999999999999998656 499999854       2     


Q ss_pred             cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                           ..+..+. + +...|.+++|+|+++.|++++.|+.+++||+...
T Consensus       168 -----~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         168 -----KCVATLT-G-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             -----ccceeEe-c-CccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence                 2333443 2 3346999999999999999999999999999763

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.69  E-value=1.9e-16  Score=166.25  Aligned_cols=239  Identities=15%  Similarity=0.167  Sum_probs=174.0

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      -++++-|++..||.         ++|+.|+.+ .++|||++ +++...++-+|-..|-.+.+..             .  
T Consensus       234 ~GHtGSVLCLqyd~---------rviisGSSDsTvrvWDv~-tge~l~tlihHceaVLhlrf~n-------------g--  288 (499)
T KOG0281|consen  234 TGHTGSVLCLQYDE---------RVIVSGSSDSTVRVWDVN-TGEPLNTLIHHCEAVLHLRFSN-------------G--  288 (499)
T ss_pred             hcCCCcEEeeeccc---------eEEEecCCCceEEEEecc-CCchhhHHhhhcceeEEEEEeC-------------C--
Confidence            45666677666654         589999876 59999995 6889999989988898888762             2  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEeC-CCCEEEEEecCCeEEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLRF-RSSVCMVRCSPRIVAV  207 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v---~tL~~-~s~V~sV~~s~~~LaV  207 (765)
                      +++.  +.                               .++++.+||+.+-..+   +.|.. ...|-.|.|+.++++.
T Consensus       289 ~mvt--cS-------------------------------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVs  335 (499)
T KOG0281|consen  289 YMVT--CS-------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS  335 (499)
T ss_pred             EEEE--ec-------------------------------CCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEE
Confidence            5533  31                               2479999999875532   33443 4689999999998887


Q ss_pred             EeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          208 GLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       208 ~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                      +.. .+|++|++.|++..++|.+|..                       -+|+..+.                       
T Consensus       336 ASgDRTikvW~~st~efvRtl~gHkR-----------------------GIAClQYr-----------------------  369 (499)
T KOG0281|consen  336 ASGDRTIKVWSTSTCEFVRTLNGHKR-----------------------GIACLQYR-----------------------  369 (499)
T ss_pred             ecCCceEEEEeccceeeehhhhcccc-----------------------cceehhcc-----------------------
Confidence            664 5799999999999999887754                       12333221                       


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~  366 (765)
                          |.||                                                ++++.|.+|+|||+..|+++..++
T Consensus       370 ----~rlv------------------------------------------------VSGSSDntIRlwdi~~G~cLRvLe  397 (499)
T KOG0281|consen  370 ----DRLV------------------------------------------------VSGSSDNTIRLWDIECGACLRVLE  397 (499)
T ss_pred             ----CeEE------------------------------------------------EecCCCceEEEEeccccHHHHHHh
Confidence                1111                                                234568899999999999999999


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (765)
Q Consensus       367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (765)
                      +|..-|.++.|+  .+.+++|.-||+ |+|||+.......        ..++..++..+-+  +.+.|..+.|.  ...|
T Consensus       398 GHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldpr--------a~~~~~Cl~~lv~--hsgRVFrLQFD--~fqI  462 (499)
T KOG0281|consen  398 GHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDPR--------APASTLCLRTLVE--HSGRVFRLQFD--EFQI  462 (499)
T ss_pred             chHHhhhheeec--Cceeeeccccce-EEEEecccccCCc--------ccccchHHHhhhh--ccceeEEEeec--ceEE
Confidence            999999999996  478999999776 9999996521100        0011124444433  34568888885  4689


Q ss_pred             EEEeCCCcEEEEeCCC
Q 004255          447 AIVSSKGTCHVFVLSP  462 (765)
Q Consensus       447 as~S~dgTVhIwdl~~  462 (765)
                      +++|.|.||-|||...
T Consensus       463 vsssHddtILiWdFl~  478 (499)
T KOG0281|consen  463 ISSSHDDTILIWDFLN  478 (499)
T ss_pred             EeccCCCeEEEEEcCC
Confidence            9999999999999865

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.69  E-value=9.9e-15  Score=149.49  Aligned_cols=255  Identities=14%  Similarity=0.154  Sum_probs=170.5

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL  132 (765)
                      +|--.+.-++||+       .+.+|.++..+. .-||-- .+|+..-++.+|.|.|.++.+.-+           ++  .
T Consensus         8 GHERplTqiKyN~-------eGDLlFscaKD~~~~vw~s-~nGerlGty~GHtGavW~~Did~~-----------s~--~   66 (327)
T KOG0643|consen    8 GHERPLTQIKYNR-------EGDLLFSCAKDSTPTVWYS-LNGERLGTYDGHTGAVWCCDIDWD-----------SK--H   66 (327)
T ss_pred             cCccccceEEecC-------CCcEEEEecCCCCceEEEe-cCCceeeeecCCCceEEEEEecCC-----------cc--e
Confidence            3444567777877       245777777764 899987 468888899999999999998732           22  3


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeC
Q 004255          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA  210 (765)
Q Consensus       133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~  210 (765)
                      |  ++|.                               .+.+++|||.++|+++.+++++.+|..+.|+.  ++++++.+
T Consensus        67 l--iTGS-------------------------------AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD  113 (327)
T KOG0643|consen   67 L--ITGS-------------------------------ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTD  113 (327)
T ss_pred             e--eecc-------------------------------ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEeh
Confidence            3  2331                               24689999999999999999999999999987  56665555


Q ss_pred             C------eEEEEECCCCce-------eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCC
Q 004255          211 T------QIYCFDALTLEN-------KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL  277 (765)
Q Consensus       211 ~------~I~iwD~~t~~~-------l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~l  277 (765)
                      +      .|.+||++....       ...|.++.                              +.+             
T Consensus       114 ~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~------------------------------ski-------------  150 (327)
T KOG0643|consen  114 KQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD------------------------------SKI-------------  150 (327)
T ss_pred             hhcCcceEEEEEEccCChhhhcccCceEEecCCc------------------------------cce-------------
Confidence            4      288888764321       11111100                              000             


Q ss_pred             CCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 004255          278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV  357 (765)
Q Consensus       278 t~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~  357 (765)
                              +                                             ...|.+....+..+..+|.|.+||+.
T Consensus       151 --------t---------------------------------------------~a~Wg~l~~~ii~Ghe~G~is~~da~  177 (327)
T KOG0643|consen  151 --------T---------------------------------------------SALWGPLGETIIAGHEDGSISIYDAR  177 (327)
T ss_pred             --------e---------------------------------------------eeeecccCCEEEEecCCCcEEEEEcc
Confidence                    0                                             00011122234567889999999999


Q ss_pred             CCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc---------cC-------------CCCCCccc
Q 004255          358 TRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM---------RS-------------GSGNHKYD  414 (765)
Q Consensus       358 s~~-~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~---------~~-------------~sG~~~~~  414 (765)
                      ++. .+...+-|.+.|+.|.|+||.++++|+|. +++-++||..+...         .+             +-|....+
T Consensus       178 ~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~-Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~d  256 (327)
T KOG0643|consen  178 TGKELVDSDEEHSSKINDLQFSRDRTYFITGSK-DTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMD  256 (327)
T ss_pred             cCceeeechhhhccccccccccCCcceEEeccc-CccceeeeccceeeEEEeeecccccceecccccceEEecCCceeee
Confidence            974 56667889999999999999999999999 56799999865310         00             00110000


Q ss_pred             c----------CCcc------eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          415 W----------NSSH------VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       415 ~----------~~s~------~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      .          .+..      ..+-.+ .| |-++|.+|+|+|||+-.++|+.||+|+|...+
T Consensus       257 VTTT~~r~GKFEArFyh~i~eEEigrv-kG-HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  257 VTTTSTRAGKFEARFYHLIFEEEIGRV-KG-HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             eeeecccccchhhhHHHHHHHHHhccc-cc-cccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            0          0000      111111 13 33579999999999999999999999886554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=4.5e-15  Score=149.62  Aligned_cols=209  Identities=14%  Similarity=0.082  Sum_probs=151.8

Q ss_pred             eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 004255           98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF  177 (765)
Q Consensus        98 ~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~l  177 (765)
                      ..++..++|+|+.+++.-+             ....+ .+|                                ++++|||
T Consensus        10 ~~~l~~~qgaV~avryN~d-------------GnY~l-tcG--------------------------------sdrtvrL   43 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVD-------------GNYCL-TCG--------------------------------SDRTVRL   43 (307)
T ss_pred             ceeecccccceEEEEEccC-------------CCEEE-EcC--------------------------------CCceEEe
Confidence            4578889999999998743             22432 333                                2589999


Q ss_pred             EECCCCeEEEEEeCCC-CEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEc
Q 004255          178 YSFQSHCYEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG  253 (765)
Q Consensus       178 Wdlktg~~v~tL~~~s-~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Als  253 (765)
                      |+...|.+++++..++ .|++++.+.   ++-..|.+..|++||+.|++..+.+.+|-..             .+.+.| 
T Consensus        44 WNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq-------------VNtV~f-  109 (307)
T KOG0316|consen   44 WNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ-------------VNTVRF-  109 (307)
T ss_pred             ecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce-------------eeEEEe-
Confidence            9999999999999875 899888654   4444556678999999999999999887651             122222 


Q ss_pred             cceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCC
Q 004255          254 PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS  333 (765)
Q Consensus       254 pr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~  333 (765)
                            -.+..                                                                     
T Consensus       110 ------NeesS---------------------------------------------------------------------  114 (307)
T KOG0316|consen  110 ------NEESS---------------------------------------------------------------------  114 (307)
T ss_pred             ------cCcce---------------------------------------------------------------------
Confidence                  22110                                                                     


Q ss_pred             ccccccccccccCCCCeEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 004255          334 VWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH  411 (765)
Q Consensus       334 ~~~~~~~~~~~~~~dG~V~IwDl~s~--~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~  411 (765)
                             .+++++.|..+++||.++.  ++++.|..-...|.++..+  +..++++|.||+ +|.||++.       |  
T Consensus       115 -------Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt-vRtydiR~-------G--  175 (307)
T KOG0316|consen  115 -------VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT-VRTYDIRK-------G--  175 (307)
T ss_pred             -------EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc-EEEEEeec-------c--
Confidence                   0124566889999999764  6788888888899888775  578999999886 99999965       4  


Q ss_pred             ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255          412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h  472 (765)
                              +..-..    -..+|+|++||+||+.+.+++.|+|+|+-|-.+.+-.....+|
T Consensus       176 --------~l~sDy----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh  224 (307)
T KOG0316|consen  176 --------TLSSDY----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH  224 (307)
T ss_pred             --------eeehhh----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence                    121111    1247999999999999999999999999887654333333344

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.68  E-value=5.3e-14  Score=147.72  Aligned_cols=267  Identities=13%  Similarity=0.091  Sum_probs=160.9

Q ss_pred             eEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255           76 QVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (765)
Q Consensus        76 ~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~  154 (765)
                      .+++++..++ +.+||++ ++++...+..+.+ +..+.+.|+             ...|+++..+               
T Consensus         2 ~~~~s~~~d~~v~~~d~~-t~~~~~~~~~~~~-~~~l~~~~d-------------g~~l~~~~~~---------------   51 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTA-TLEVTRTFPVGQR-PRGITLSKD-------------GKLLYVCASD---------------   51 (300)
T ss_pred             cEEEEecCCCEEEEEECC-CCceEEEEECCCC-CCceEECCC-------------CCEEEEEECC---------------
Confidence            3666766665 9999995 4666667765544 566777764             1244433221               


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE--eCCeEEEEECCCCceeEEEEec
Q 004255          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG--LATQIYCFDALTLENKFSVLTY  230 (765)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~--~~~~I~iwD~~t~~~l~tl~t~  230 (765)
                                       .++|++||+.+++.++.+.....+..+.+++  +.|+++  .++.|++||+.+.+.+..+...
T Consensus        52 -----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~  114 (300)
T TIGR03866        52 -----------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG  114 (300)
T ss_pred             -----------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence                             2589999999999988887655566777776  556554  3568999999988766665422


Q ss_pred             CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255          231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (765)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G  308 (765)
                      ..              ...++++|  ++|+++......    ...++..+            +.++.             
T Consensus       115 ~~--------------~~~~~~~~dg~~l~~~~~~~~~----~~~~d~~~------------~~~~~-------------  151 (300)
T TIGR03866       115 VE--------------PEGMAVSPDGKIVVNTSETTNM----AHFIDTKT------------YEIVD-------------  151 (300)
T ss_pred             CC--------------cceEEECCCCCEEEEEecCCCe----EEEEeCCC------------CeEEE-------------
Confidence            11              12367776  666665432100    00001000            00000             


Q ss_pred             cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCC-----C--CeEEEEECCCC
Q 004255          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-----S--PISALCFDPSG  381 (765)
Q Consensus       309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~-----~--~IsaLaFSpdG  381 (765)
                         .+       ..........++++++..   .+.+..+|.|.+||+.+++.+..+..+.     .  ....++|+|+|
T Consensus       152 ---~~-------~~~~~~~~~~~s~dg~~l---~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  218 (300)
T TIGR03866       152 ---NV-------LVDQRPRFAEFTADGKEL---WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG  218 (300)
T ss_pred             ---EE-------EcCCCccEEEECCCCCEE---EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence               00       000001112223333321   1234568999999999998877765332     1  12468899999


Q ss_pred             CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCcEEEEeC
Q 004255          382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVL  460 (765)
Q Consensus       382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl  460 (765)
                      ++++.+..++..|.+||+..       +          ..+..+..+   ..+.+++|+|||++|+++ ..+++|+|||+
T Consensus       219 ~~~~~~~~~~~~i~v~d~~~-------~----------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~  278 (300)
T TIGR03866       219 KTAFVALGPANRVAVVDAKT-------Y----------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDV  278 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCC-------C----------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            98665543344699999854       2          233333222   248899999999999886 46899999999


Q ss_pred             CCCCC
Q 004255          461 SPFGG  465 (765)
Q Consensus       461 ~~~gg  465 (765)
                      .....
T Consensus       279 ~~~~~  283 (300)
T TIGR03866       279 AALKV  283 (300)
T ss_pred             CCCcE
Confidence            87543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.68  E-value=3.9e-15  Score=152.02  Aligned_cols=243  Identities=17%  Similarity=0.187  Sum_probs=170.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceE-eeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNE-LVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~e-lls~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ...+..++.-+.|+-       .+.-|+.|.-++ ..||+++......+ ...+|.+.|..+.+.|.            .
T Consensus        16 ~~~~~~~v~Sv~wn~-------~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~------------~   76 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNC-------DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK------------H   76 (313)
T ss_pred             hhhhhhcceEEEEcc-------cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC------------C
Confidence            344666777777765       356788888776 89999975432222 34566678888888763            2


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEE
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV  207 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV  207 (765)
                      -++++++++                                 +++|++||++++++++.+.-...=..+.++|  ..+++
T Consensus        77 ~d~~atas~---------------------------------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~  123 (313)
T KOG1407|consen   77 PDLFATASG---------------------------------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAV  123 (313)
T ss_pred             CcceEEecC---------------------------------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEE
Confidence            357776543                                 3689999999999999998876656667776  66666


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                      +. ++.|.++|+++.+....-+   -+.       .    .+-+++.      -+++.                      
T Consensus       124 ~~kdD~it~id~r~~~~~~~~~---~~~-------e----~ne~~w~------~~nd~----------------------  161 (313)
T KOG1407|consen  124 GNKDDRITFIDARTYKIVNEEQ---FKF-------E----VNEISWN------NSNDL----------------------  161 (313)
T ss_pred             ecCcccEEEEEecccceeehhc---ccc-------e----eeeeeec------CCCCE----------------------
Confidence            55 5689999998876443321   100       0    0111110      00000                      


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~  366 (765)
                            +.                                                 -...-|+|.|-...+.+++..|+
T Consensus       162 ------Ff-------------------------------------------------lt~GlG~v~ILsypsLkpv~si~  186 (313)
T KOG1407|consen  162 ------FF-------------------------------------------------LTNGLGCVEILSYPSLKPVQSIK  186 (313)
T ss_pred             ------EE-------------------------------------------------EecCCceEEEEeccccccccccc
Confidence                  00                                                 01124789999989999999999


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (765)
Q Consensus       367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (765)
                      +|.....|+.|+|+|++||+||. +..+-+||+...                 .++..+.|-  ..+|..|+||.||++|
T Consensus       187 AH~snCicI~f~p~GryfA~GsA-DAlvSLWD~~EL-----------------iC~R~isRl--dwpVRTlSFS~dg~~l  246 (313)
T KOG1407|consen  187 AHPSNCICIEFDPDGRYFATGSA-DALVSLWDVDEL-----------------ICERCISRL--DWPVRTLSFSHDGRML  246 (313)
T ss_pred             cCCcceEEEEECCCCceEeeccc-cceeeccChhHh-----------------hhheeeccc--cCceEEEEeccCccee
Confidence            99999999999999999999999 567999998542                 244444442  3469999999999999


Q ss_pred             EEEeCCCcEEEEeCCCC
Q 004255          447 AIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       447 as~S~dgTVhIwdl~~~  463 (765)
                      |++|.|..|-|=++++.
T Consensus       247 ASaSEDh~IDIA~vetG  263 (313)
T KOG1407|consen  247 ASASEDHFIDIAEVETG  263 (313)
T ss_pred             eccCccceEEeEecccC
Confidence            99999999988777653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.67  E-value=4.3e-16  Score=169.73  Aligned_cols=259  Identities=15%  Similarity=0.118  Sum_probs=184.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..+|++.|..++|=.+      ...+|+.|..++ ++||++=+.+.|.+++.+|..+|+.+.+.+.+.            
T Consensus       210 ~~gH~kgvsai~~fp~------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~------------  271 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPK------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT------------  271 (503)
T ss_pred             ccCCccccchhhhccc------eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC------------
Confidence            5678888887777332      256888888777 999999877899999999999999999886431            


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAV  207 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV  207 (765)
                      -+| .++                                 -++.|++||++||+++..+.....++.|.+.|   +++++
T Consensus       272 ~fL-S~s---------------------------------fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~  317 (503)
T KOG0282|consen  272 SFL-SAS---------------------------------FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLV  317 (503)
T ss_pred             eee-eee---------------------------------cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEE
Confidence            133 221                                 24799999999999999999888999999987   45555


Q ss_pred             -EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          208 -GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       208 -~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                       +.+.+|..||+++++.++....|-.+             ...+.|       -.                         
T Consensus       318 G~sd~ki~~wDiRs~kvvqeYd~hLg~-------------i~~i~F-------~~-------------------------  352 (503)
T KOG0282|consen  318 GGSDKKIRQWDIRSGKVVQEYDRHLGA-------------ILDITF-------VD-------------------------  352 (503)
T ss_pred             ecCCCcEEEEeccchHHHHHHHhhhhh-------------eeeeEE-------cc-------------------------
Confidence             55678999999999865544322110             011111       00                         


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~  366 (765)
                        .|..                                                 .++...|+.++||+...+-.+..+.
T Consensus       353 --~g~r-------------------------------------------------FissSDdks~riWe~~~~v~ik~i~  381 (503)
T KOG0282|consen  353 --EGRR-------------------------------------------------FISSSDDKSVRIWENRIPVPIKNIA  381 (503)
T ss_pred             --CCce-------------------------------------------------EeeeccCccEEEEEcCCCccchhhc
Confidence              0000                                                 1123467899999998876655443


Q ss_pred             -cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCC
Q 004255          367 -AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQ  444 (765)
Q Consensus       367 -aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~  444 (765)
                       .+.....+|+.+|+|.+++.=|. |..|-+|.+.+.+.               ...++-..|+..+ --..|.|||||+
T Consensus       382 ~~~~hsmP~~~~~P~~~~~~aQs~-dN~i~ifs~~~~~r---------------~nkkK~feGh~vaGys~~v~fSpDG~  445 (503)
T KOG0282|consen  382 DPEMHTMPCLTLHPNGKWFAAQSM-DNYIAIFSTVPPFR---------------LNKKKRFEGHSVAGYSCQVDFSPDGR  445 (503)
T ss_pred             chhhccCcceecCCCCCeehhhcc-CceEEEEecccccc---------------cCHhhhhcceeccCceeeEEEcCCCC
Confidence             33345668999999999999998 66799999855211               1112222343322 235689999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCcccccccC
Q 004255          445 WIAIVSSKGTCHVFVLSPFGGDSGFQTLSS  474 (765)
Q Consensus       445 ~Las~S~dgTVhIwdl~~~gg~~~~~~h~~  474 (765)
                      +|++|+.||.+.+||.++-.....+++|+.
T Consensus       446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~  475 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ  475 (503)
T ss_pred             eEEeecCCccEEEeechhhhhhhccccCCc
Confidence            999999999999999999888888888864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=5.6e-15  Score=148.96  Aligned_cols=245  Identities=15%  Similarity=0.146  Sum_probs=174.3

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL  132 (765)
                      +..++-|.-++||.    |  ..-+|.+|.+..+++|+. ..|.+.+++++|.-.|..++..-           -.+  -
T Consensus        14 ~~~qgaV~avryN~----d--GnY~ltcGsdrtvrLWNp-~rg~liktYsghG~EVlD~~~s~-----------Dns--k   73 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNV----D--GNYCLTCGSDRTVRLWNP-LRGALIKTYSGHGHEVLDAALSS-----------DNS--K   73 (307)
T ss_pred             cccccceEEEEEcc----C--CCEEEEcCCCceEEeecc-cccceeeeecCCCceeeeccccc-----------ccc--c
Confidence            45678899999987    2  256888888889999999 56889999999999998888762           222  3


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEE-
Q 004255          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-  208 (765)
Q Consensus       133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~-  208 (765)
                      ++.  |++                               ++.|.+||+.||+.++.++.| ..|..|+||.  .+|+.| 
T Consensus        74 f~s--~Gg-------------------------------Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs  120 (307)
T KOG0316|consen   74 FAS--CGG-------------------------------DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS  120 (307)
T ss_pred             ccc--CCC-------------------------------CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc
Confidence            443  321                               378999999999999999877 5899999998  466654 


Q ss_pred             eCCeEEEEECCCC--ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          209 LATQIYCFDALTL--ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       209 ~~~~I~iwD~~t~--~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                      .+..+++||-+.-  +.++.|.+...               +.+++                                  
T Consensus       121 fD~s~r~wDCRS~s~ePiQildea~D---------------~V~Si----------------------------------  151 (307)
T KOG0316|consen  121 FDSSVRLWDCRSRSFEPIQILDEAKD---------------GVSSI----------------------------------  151 (307)
T ss_pred             ccceeEEEEcccCCCCccchhhhhcC---------------ceeEE----------------------------------
Confidence            5668999997643  22222211000               00000                                  


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~  366 (765)
                                               .+.++                        -+..++.||+++.||++.|+.....-
T Consensus       152 -------------------------~v~~h------------------------eIvaGS~DGtvRtydiR~G~l~sDy~  182 (307)
T KOG0316|consen  152 -------------------------DVAEH------------------------EIVAGSVDGTVRTYDIRKGTLSSDYF  182 (307)
T ss_pred             -------------------------Eeccc------------------------EEEeeccCCcEEEEEeecceeehhhc
Confidence                                     00000                        02245689999999999998777666


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc-EEEEEEccCCCE
Q 004255          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT-IQDICFSHYSQW  445 (765)
Q Consensus       367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~-I~slaFSpDg~~  445 (765)
                      +|  ||++++|++||+.++.++.+ .++|+-|-.+       |          ..|... .|+.+.. =.+++|+.....
T Consensus       183 g~--pit~vs~s~d~nc~La~~l~-stlrLlDk~t-------G----------klL~sY-kGhkn~eykldc~l~qsdth  241 (307)
T KOG0316|consen  183 GH--PITSVSFSKDGNCSLASSLD-STLRLLDKET-------G----------KLLKSY-KGHKNMEYKLDCCLNQSDTH  241 (307)
T ss_pred             CC--cceeEEecCCCCEEEEeecc-ceeeecccch-------h----------HHHHHh-cccccceeeeeeeeccccee
Confidence            65  99999999999999999994 5699999755       4          233222 3544331 346788888889


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCccc
Q 004255          446 IAIVSSKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       446 Las~S~dgTVhIwdl~~~gg~~~~  469 (765)
                      +++||.||.|.+||+........+
T Consensus       242 V~sgSEDG~Vy~wdLvd~~~~sk~  265 (307)
T KOG0316|consen  242 VFSGSEDGKVYFWDLVDETQISKL  265 (307)
T ss_pred             EEeccCCceEEEEEeccceeeeee
Confidence            999999999999999875443333

>PTZ00421 coronin; Provisional

Probab=99.67  E-value=5.1e-14  Score=161.72  Aligned_cols=249  Identities=12%  Similarity=0.111  Sum_probs=163.5

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------cceEeeeeccCCEEEEEEecCCCCCCCCCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCEG  125 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g------~~~ells~~dg~V~~v~~lP~p~~~~~~d~  125 (765)
                      .+|++.|..+.|+..      .+++|++|..+| ++|||+...+      +....+..|...|.+|++.|..        
T Consensus        72 ~GH~~~V~~v~fsP~------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--------  137 (493)
T PTZ00421         72 LGQEGPIIDVAFNPF------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--------  137 (493)
T ss_pred             eCCCCCEEEEEEcCC------CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--------
Confidence            457888998888652      145788887776 9999996432      2345678899999999998741        


Q ss_pred             ccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--
Q 004255          126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--  202 (765)
Q Consensus       126 f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--  202 (765)
                          ..+|++.+                                 .+++|+|||+.+++.+..+.. ...|.+|++++  
T Consensus       138 ----~~iLaSgs---------------------------------~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG  180 (493)
T PTZ00421        138 ----MNVLASAG---------------------------------ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG  180 (493)
T ss_pred             ----CCEEEEEe---------------------------------CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence                13665422                                 136899999999999999875 46899999987  


Q ss_pred             CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCC
Q 004255          203 RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                      ++|+++. ++.|+|||+++++.+.++..|....            ...+.+.+       ..                  
T Consensus       181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~------------~~~~~w~~-------~~------------------  223 (493)
T PTZ00421        181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK------------SQRCLWAK-------RK------------------  223 (493)
T ss_pred             CEEEEecCCCEEEEEECCCCcEEEEEecCCCCc------------ceEEEEcC-------CC------------------
Confidence            5777665 5689999999998888776654310            00111111       00                  


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-  360 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~-  360 (765)
                               +.+++                                             ...+...|+.|+|||+.+.. 
T Consensus       224 ---------~~ivt---------------------------------------------~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        224 ---------DLIIT---------------------------------------------LGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             ---------CeEEE---------------------------------------------EecCCCCCCeEEEEeCCCCCC
Confidence                     00000                                             00022458899999998754 


Q ss_pred             EEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 004255          361 IISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF  439 (765)
Q Consensus       361 ~i~~~~aH-~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF  439 (765)
                      .+..+..| ...+....|++++.+|++++..+..|++||+..       +          ..++.+. ......+..++|
T Consensus       250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~-------~----------~~~~~~~-~~s~~~~~g~~~  311 (493)
T PTZ00421        250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN-------E----------RLTFCSS-YSSVEPHKGLCM  311 (493)
T ss_pred             ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC-------C----------ceEEEee-ccCCCCCcceEe
Confidence            44444434 345667789999999999986445699999964       2          2222222 223345778889


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          440 SHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       440 SpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      .|.  +-+-...-...++|.+...
T Consensus       312 ~pk--~~~dv~~~Ei~r~~~l~~~  333 (493)
T PTZ00421        312 MPK--WSLDTRKCEIARFYALTYH  333 (493)
T ss_pred             ccc--ccccccceeeeEEEEecCC
Confidence            884  4444444455688887643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=8.6e-14  Score=145.66  Aligned_cols=249  Identities=14%  Similarity=0.179  Sum_probs=161.5

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL  133 (765)
                      ....|.-..|+.       .+.+|+++..+ .+||||+.. +.+.+++....=.|..+.+.-           ... .+|
T Consensus        13 ~~~~i~sl~fs~-------~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth-----------~~~-~~i   72 (311)
T KOG1446|consen   13 TNGKINSLDFSD-------DGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTH-----------HSN-TVI   72 (311)
T ss_pred             CCCceeEEEecC-------CCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEec-----------CCc-eEE
Confidence            567777777765       35677776655 899999964 656666655544466666551           111 122


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEEEe
Q 004255          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVGL  209 (765)
Q Consensus       134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV~~  209 (765)
                      .  +  .+                            .-+.+||.-++.++++++.+..| ..|.+++.+|   .+|-++.
T Consensus        73 ~--s--St----------------------------k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~  120 (311)
T KOG1446|consen   73 H--S--ST----------------------------KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL  120 (311)
T ss_pred             E--c--cC----------------------------CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEeccc
Confidence            1  1  10                            01369999999999999999977 5899999998   4666788


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCC
Q 004255          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG  289 (765)
Q Consensus       210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~  289 (765)
                      |++|++||+++-++...+.-...|               .+|+.|.-|.++                             
T Consensus       121 D~tvrLWDlR~~~cqg~l~~~~~p---------------i~AfDp~GLifA-----------------------------  156 (311)
T KOG1446|consen  121 DKTVRLWDLRVKKCQGLLNLSGRP---------------IAAFDPEGLIFA-----------------------------  156 (311)
T ss_pred             CCeEEeeEecCCCCceEEecCCCc---------------ceeECCCCcEEE-----------------------------
Confidence            889999999987765555432221               234433111111                             


Q ss_pred             CCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC--cEEEEec-
Q 004255          290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFK-  366 (765)
Q Consensus       290 ~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~--~~i~~~~-  366 (765)
                                                                            .+...+.|+|||+++-  .+-.+|. 
T Consensus       157 ------------------------------------------------------~~~~~~~IkLyD~Rs~dkgPF~tf~i  182 (311)
T KOG1446|consen  157 ------------------------------------------------------LANGSELIKLYDLRSFDKGPFTTFSI  182 (311)
T ss_pred             ------------------------------------------------------EecCCCeEEEEEecccCCCCceeEcc
Confidence                                                                  1112237889998763  2333443 


Q ss_pred             --cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 004255          367 --AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (765)
Q Consensus       367 --aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (765)
                        +-....+.|.|||||++|+-+.. +..+.|.|.-.       |.        ..+-+........-. .+.+|+|||+
T Consensus       183 ~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~-------G~--------~~~tfs~~~~~~~~~-~~a~ftPds~  245 (311)
T KOG1446|consen  183 TDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFD-------GT--------VKSTFSGYPNAGNLP-LSATFTPDSK  245 (311)
T ss_pred             CCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccC-------Cc--------EeeeEeeccCCCCcc-eeEEECCCCc
Confidence              34678899999999999988877 44689999743       41        122223322211112 5789999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCcccc
Q 004255          445 WIAIVSSKGTCHVFVLSPFGGDSGFQ  470 (765)
Q Consensus       445 ~Las~S~dgTVhIwdl~~~gg~~~~~  470 (765)
                      ++.+|+.||+||+|++++......++
T Consensus       246 Fvl~gs~dg~i~vw~~~tg~~v~~~~  271 (311)
T KOG1446|consen  246 FVLSGSDDGTIHVWNLETGKKVAVLR  271 (311)
T ss_pred             EEEEecCCCcEEEEEcCCCcEeeEec
Confidence            99999999999999997644333333

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.66  E-value=4e-15  Score=162.49  Aligned_cols=245  Identities=15%  Similarity=0.169  Sum_probs=175.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      ..++.+.|....|..-      .+.=+++...-++|||+.. .-.+.+++++=+..|..+.|             ++.+-
T Consensus        22 ~~ke~~~vssl~fsp~------~P~d~aVt~S~rvqly~~~-~~~~~k~~srFk~~v~s~~f-------------R~DG~   81 (487)
T KOG0310|consen   22 VHKEHNSVSSLCFSPK------HPYDFAVTSSVRVQLYSSV-TRSVRKTFSRFKDVVYSVDF-------------RSDGR   81 (487)
T ss_pred             cccccCcceeEecCCC------CCCceEEecccEEEEEecc-hhhhhhhHHhhccceeEEEe-------------ecCCe
Confidence            3445566666666541      2334677778889999984 45577778877778888874             44455


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAV  207 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV  207 (765)
                      |||.  ||.                               .+.|+++|+++...+..+.-+ .+|..+.|++   .+++.
T Consensus        82 Llaa--GD~-------------------------------sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s  128 (487)
T KOG0310|consen   82 LLAA--GDE-------------------------------SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS  128 (487)
T ss_pred             EEEc--cCC-------------------------------cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe
Confidence            7753  554                               268999999887777777654 6999999988   46666


Q ss_pred             EeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          208 GLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       208 ~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                      |.|+ .+++||+.+......|.+|..-             ....+++                                 
T Consensus       129 ~sDd~v~k~~d~s~a~v~~~l~~htDY-------------VR~g~~~---------------------------------  162 (487)
T KOG0310|consen  129 GSDDKVVKYWDLSTAYVQAELSGHTDY-------------VRCGDIS---------------------------------  162 (487)
T ss_pred             cCCCceEEEEEcCCcEEEEEecCCcce-------------eEeeccc---------------------------------
Confidence            7666 4899999988754455555540             0111111                                 


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEe
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQF  365 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~  365 (765)
                       |.++.+                                                ..+|++||.|++||+.+. ..+..|
T Consensus       163 -~~~~hi------------------------------------------------vvtGsYDg~vrl~DtR~~~~~v~el  193 (487)
T KOG0310|consen  163 -PANDHI------------------------------------------------VVTGSYDGKVRLWDTRSLTSRVVEL  193 (487)
T ss_pred             -cCCCeE------------------------------------------------EEecCCCceEEEEEeccCCceeEEe
Confidence             111111                                                235689999999999987 555555


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (765)
Q Consensus       366 ~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (765)
                       .|..||..+.|=|.|.++|||+  |..|||||+..       |.         +.++.+  ..|...|+|+.+..|++.
T Consensus       194 -nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~-------G~---------qll~~~--~~H~KtVTcL~l~s~~~r  252 (487)
T KOG0310|consen  194 -NHGCPVESVLALPSGSLIASAG--GNSVKVWDLTT-------GG---------QLLTSM--FNHNKTVTCLRLASDSTR  252 (487)
T ss_pred             -cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecC-------Cc---------eehhhh--hcccceEEEEEeecCCce
Confidence             5888999999999999999998  67899999965       31         444443  335567999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCCC
Q 004255          446 IAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       446 Las~S~dgTVhIwdl~~~gg  465 (765)
                      |.+++-|+.|+|||+..++-
T Consensus       253 LlS~sLD~~VKVfd~t~~Kv  272 (487)
T KOG0310|consen  253 LLSGSLDRHVKVFDTTNYKV  272 (487)
T ss_pred             EeecccccceEEEEccceEE
Confidence            99999999999999887754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=8.7e-15  Score=164.51  Aligned_cols=237  Identities=19%  Similarity=0.195  Sum_probs=175.4

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEE
Q 004255           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL  134 (765)
Q Consensus        56 ~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLa  134 (765)
                      .+.|.-+.++.       .++.|++|+.+| ++|||+......+.+...|.+.|.++++..                .++
T Consensus       217 ~~~vtSv~ws~-------~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----------------~~l  273 (484)
T KOG0305|consen  217 EELVTSVKWSP-------DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----------------SVL  273 (484)
T ss_pred             CCceEEEEECC-------CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----------------ceE
Confidence            45555555544       478999999998 899999776655555555899999999872                222


Q ss_pred             EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEE-EeC-CCCEEEEEecC--CeEEEEe-
Q 004255          135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV-LRF-RSSVCMVRCSP--RIVAVGL-  209 (765)
Q Consensus       135 vv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~t-L~~-~s~V~sV~~s~--~~LaV~~-  209 (765)
                      . +|.                               -++.|..+|++..+.+.. +.. ...|+.+++++  +.||+|. 
T Consensus       274 s-sGs-------------------------------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn  321 (484)
T KOG0305|consen  274 S-SGS-------------------------------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN  321 (484)
T ss_pred             E-Eec-------------------------------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC
Confidence            2 221                               136899999998876555 664 46999999987  7888854 


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                      |+.++|||..+.+.++++.+|..             .+..++++|   ..||.++                         
T Consensus       322 DN~~~Iwd~~~~~p~~~~~~H~a-------------AVKA~awcP~q~~lLAsGG-------------------------  363 (484)
T KOG0305|consen  322 DNVVFIWDGLSPEPKFTFTEHTA-------------AVKALAWCPWQSGLLATGG-------------------------  363 (484)
T ss_pred             ccceEeccCCCccccEEEeccce-------------eeeEeeeCCCccCceEEcC-------------------------
Confidence            67899999988888888888765             234566655   3333332                         


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~  366 (765)
                                                                                +..|+.|++||..+++.+..+.
T Consensus       364 ----------------------------------------------------------Gs~D~~i~fwn~~~g~~i~~vd  385 (484)
T KOG0305|consen  364 ----------------------------------------------------------GSADRCIKFWNTNTGARIDSVD  385 (484)
T ss_pred             ----------------------------------------------------------CCcccEEEEEEcCCCcEecccc
Confidence                                                                      3468999999999999888776


Q ss_pred             cCCCCeEEEEECCCCCEEEEE-EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255          367 AHTSPISALCFDPSGTLLVTA-SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (765)
Q Consensus       367 aH~~~IsaLaFSpdG~lLATa-S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (765)
                      .. +-|..|.|++..+-|+++ +.-...|.||+....                 .++..+. || ...|..+++||||..
T Consensus       386 tg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-----------------~~~~~l~-gH-~~RVl~la~SPdg~~  445 (484)
T KOG0305|consen  386 TG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-----------------KLVAELL-GH-TSRVLYLALSPDGET  445 (484)
T ss_pred             cC-CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-----------------ceeeeec-CC-cceeEEEEECCCCCE
Confidence            54 679999999988655554 333446999998331                 3444553 53 456999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCC
Q 004255          446 IAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       446 Las~S~dgTVhIwdl~~~  463 (765)
                      |++++.|.|+++|++-+.
T Consensus       446 i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  446 IVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEecccCcEEeccccCC
Confidence            999999999999999765

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.66  E-value=5.9e-14  Score=148.93  Aligned_cols=284  Identities=18%  Similarity=0.194  Sum_probs=177.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..++||.|..+.|.-       ++.+|++|.-+| ++||.+........+.    ++|.-|.++-+-          ...
T Consensus       102 ltgHKDSVt~~~Fsh-------dgtlLATGdmsG~v~v~~~stg~~~~~~~----~e~~dieWl~WH----------p~a  160 (399)
T KOG0296|consen  102 LTGHKDSVTCCSFSH-------DGTLLATGDMSGKVLVFKVSTGGEQWKLD----QEVEDIEWLKWH----------PRA  160 (399)
T ss_pred             ecCCCCceEEEEEcc-------CceEEEecCCCccEEEEEcccCceEEEee----cccCceEEEEec----------ccc
Confidence            346999999999965       478999999888 9999996543333333    445555555431          112


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-CEEEEEecC--CeEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAV  207 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~~LaV  207 (765)
                      ++|+.  |.                               .++.|-.|.+-++.+.+.+..++ ++.+=.|.|  +++++
T Consensus       161 ~illA--G~-------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  161 HILLA--GS-------------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             cEEEe--ec-------------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence            34432  21                               13679999999888888888764 666666665  77777


Q ss_pred             EeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCC-c--eecC--CccccCCCC-CC
Q 004255          208 GLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNT-L--LLSN--SGRLSPQNL-TP  279 (765)
Q Consensus       208 ~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~-~--~~~~--~G~~s~~~l-t~  279 (765)
                      +.+ +.|++||+.|++.++++....-..            ..+++++- -+++..++. .  ..++  +|.+..-.. +.
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~------------~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~  275 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEGLE------------LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV  275 (399)
T ss_pred             EecCceEEEEecCCCceeEEecccccCc------------CCccccccccceeEeccCCccEEEEccccceEEEecCCCC
Confidence            765 579999999999999887311000            01222322 233333221 0  1110  011100000 00


Q ss_pred             CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCcccccccc-ccccCCCCeEEEEECCC
Q 004255          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHA-GADMDNAGIVVVKDFVT  358 (765)
Q Consensus       280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~-~~~~~~dG~V~IwDl~s  358 (765)
                      +.+    .++....+                     .+-+.+|-.+.             .+ -+.+.-||+|.|||+..
T Consensus       276 ~~l----~~~~e~~~---------------------esve~~~~ss~-------------lpL~A~G~vdG~i~iyD~a~  317 (399)
T KOG0296|consen  276 PEL----KPSQEELD---------------------ESVESIPSSSK-------------LPLAACGSVDGTIAIYDLAA  317 (399)
T ss_pred             ccc----cccchhhh---------------------hhhhhcccccc-------------cchhhcccccceEEEEeccc
Confidence            000    00000000                     00000111000             11 23567899999999998


Q ss_pred             CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 004255          359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (765)
Q Consensus       359 ~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (765)
                      .+.. .+-.|..+|..|.|-+ -.+|+||+.+|+ ||.||.++       |          +.+++++ |+ +..|++++
T Consensus       318 ~~~R-~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRt-------G----------~l~~~y~-GH-~~~Il~f~  375 (399)
T KOG0296|consen  318 STLR-HICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDART-------G----------QLKFTYT-GH-QMGILDFA  375 (399)
T ss_pred             chhh-eeccCCCceEEEEEcC-cchheeeccCce-EEeeeccc-------c----------ceEEEEe-cC-chheeEEE
Confidence            7654 4456889999999999 678888888775 99999977       5          5777774 64 46799999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCC
Q 004255          439 FSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       439 FSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      .+||.++++++|.|+|.+||++.
T Consensus       376 ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  376 LSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999874

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.4e-15  Score=172.46  Aligned_cols=212  Identities=13%  Similarity=0.185  Sum_probs=151.9

Q ss_pred             CEEEEEECCCCeEEEEEe-CCCCEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~--~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (765)
                      ++|++||-+=|.+++.+. +.++|..|.|.+  -++++|.|+ +|++|+..+-+|+++|.+|-.=             ..
T Consensus        31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY-------------VR   97 (1202)
T KOG0292|consen   31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY-------------VR   97 (1202)
T ss_pred             ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce-------------eE
Confidence            589999999999999886 567999999998  366666555 7999999999999999887541             11


Q ss_pred             eeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (765)
Q Consensus       249 ~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~  328 (765)
                      .+.|.+       .-                                                                |
T Consensus        98 t~~FHh-------ey----------------------------------------------------------------P  106 (1202)
T KOG0292|consen   98 TVFFHH-------EY----------------------------------------------------------------P  106 (1202)
T ss_pred             EeeccC-------CC----------------------------------------------------------------c
Confidence            222322       00                                                                0


Q ss_pred             ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (765)
Q Consensus       329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s  408 (765)
                            |      +.+++.|.+|+||+..++++++.+.+|..-|.|..|+|...++++||-| .+|||||+.-...++..
T Consensus       107 ------W------IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLD-QTVRVWDisGLRkk~~~  173 (1202)
T KOG0292|consen  107 ------W------ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLD-QTVRVWDISGLRKKNKA  173 (1202)
T ss_pred             ------e------EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEeccc-ceEEEEeecchhccCCC
Confidence                  0      1234568899999999999999999999999999999999999999995 56999999532111110


Q ss_pred             -C--------CC-ccccCC--cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC-C-cccccccC
Q 004255          409 -G--------NH-KYDWNS--SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG-D-SGFQTLSS  474 (765)
Q Consensus       409 -G--------~~-~~~~~~--s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg-~-~~~~~h~~  474 (765)
                       |        .+ ..++-+  ...-.+.| .|++++ |.-++|+|.--.|++|++|.-|++|.++..+- + -+-++|.+
T Consensus       174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VL-EGHDRG-VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n  251 (1202)
T KOG0292|consen  174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVL-EGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN  251 (1202)
T ss_pred             CCCchhhhhccccchhhcCCcCeeeeeee-cccccc-cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence             0        00 011111  11222333 466654 88899999999999999999999999987654 2 24578876


Q ss_pred             CCCCCcccc
Q 004255          475 QGGDPYLFP  483 (765)
Q Consensus       475 ~~~~~~~~p  483 (765)
                      .+..-...|
T Consensus       252 nVssvlfhp  260 (1202)
T KOG0292|consen  252 NVSSVLFHP  260 (1202)
T ss_pred             CcceEEecC
Confidence            554433333

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.65  E-value=1.7e-14  Score=149.85  Aligned_cols=222  Identities=16%  Similarity=0.213  Sum_probs=163.5

Q ss_pred             CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (765)
Q Consensus        75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~  154 (765)
                      ..+|.+|.+..+++||++ +|++..-+..|..-|..+.  |.           .-.|. +|+++.               
T Consensus       103 s~i~S~gtDk~v~~wD~~-tG~~~rk~k~h~~~vNs~~--p~-----------rrg~~-lv~Sgs---------------  152 (338)
T KOG0265|consen  103 SHILSCGTDKTVRGWDAE-TGKRIRKHKGHTSFVNSLD--PS-----------RRGPQ-LVCSGS---------------  152 (338)
T ss_pred             CEEEEecCCceEEEEecc-cceeeehhccccceeeecC--cc-----------ccCCe-EEEecC---------------
Confidence            456666666789999995 6777666667777777665  31           11233 334432               


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecC
Q 004255          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYP  231 (765)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl~t~p  231 (765)
                                      .+++++|||+++.+.+++++-.-.+.+|.|+.   +.+..+.++.|++||++..+.++++.+|.
T Consensus       153 ----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~  216 (338)
T KOG0265|consen  153 ----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA  216 (338)
T ss_pred             ----------------CCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeeccc
Confidence                            25899999999999999998888999999986   56666778899999999999999999887


Q ss_pred             CcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccce
Q 004255          232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK  311 (765)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~k  311 (765)
                      .+             ...+++++    |+.                        +                         
T Consensus       217 Dt-------------It~lsls~----~gs------------------------~-------------------------  230 (338)
T KOG0265|consen  217 DT-------------ITGLSLSR----YGS------------------------F-------------------------  230 (338)
T ss_pred             Cc-------------eeeEEecc----CCC------------------------c-------------------------
Confidence            64             12334322    000                        0                         


Q ss_pred             eecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC----CcEEEEeccCCC----CeEEEEECCCCCE
Q 004255          312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT----RAIISQFKAHTS----PISALCFDPSGTL  383 (765)
Q Consensus       312 tls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s----~~~i~~~~aH~~----~IsaLaFSpdG~l  383 (765)
                                                    +.+-.-|.++++||++-    .+++..|.+|..    ....++|+|+++.
T Consensus       231 ------------------------------llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~  280 (338)
T KOG0265|consen  231 ------------------------------LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK  280 (338)
T ss_pred             ------------------------------cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence                                          00112467999999864    356888888743    4567899999999


Q ss_pred             EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255          384 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF  458 (765)
Q Consensus       384 LATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIw  458 (765)
                      +..+|. ++.+.|||...                 ...+|+|- |+ ...|.+++|+|.-..|.+++.|.||.+=
T Consensus       281 i~ags~-dr~vyvwd~~~-----------------r~~lyklp-Gh-~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  281 ITAGSA-DRFVYVWDTTS-----------------RRILYKLP-GH-YGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             cccccc-cceEEEeeccc-----------------ccEEEEcC-Cc-ceeEEEeeecCCCcEEEEeccCceeEee
Confidence            999998 56799999843                 14788885 54 4579999999999999999999999863

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.65  E-value=6.6e-14  Score=153.93  Aligned_cols=282  Identities=17%  Similarity=0.169  Sum_probs=172.6

Q ss_pred             EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 004255           86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS  165 (765)
Q Consensus        86 ~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~  165 (765)
                      +-+-++++.. ..+++..|..+|..++++|..        |     .+|.  ||.                         
T Consensus        41 v~ir~i~~~~-~~~iYtEH~~~vtVAkySPsG--------~-----yiAS--GD~-------------------------   79 (603)
T KOG0318|consen   41 VIIRNIDNPA-SVDIYTEHAHQVTVAKYSPSG--------F-----YIAS--GDV-------------------------   79 (603)
T ss_pred             EEEEECCCcc-ceeeeccccceeEEEEeCCCc--------e-----EEee--cCC-------------------------
Confidence            5666775433 457888898999999999852        2     5543  432                         


Q ss_pred             CCCCCCCCEEEEEECCCCeEEE--EEe-CCCCEEEEEecC---CeEEEEeCC----eEEEEECCCCceeEEEEecCCccc
Q 004255          166 GNCVNSPTAVRFYSFQSHCYEH--VLR-FRSSVCMVRCSP---RIVAVGLAT----QIYCFDALTLENKFSVLTYPVPQL  235 (765)
Q Consensus       166 ~~~~~~p~tV~lWdlktg~~v~--tL~-~~s~V~sV~~s~---~~LaV~~~~----~I~iwD~~t~~~l~tl~t~p~p~~  235 (765)
                            .++|||||....+.+-  +++ |.++|.+|+.+.   |++|||-..    .++.||-  +...-.+.+|..   
T Consensus        80 ------sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS--G~SvGei~GhSr---  148 (603)
T KOG0318|consen   80 ------SGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS--GNSVGEITGHSR---  148 (603)
T ss_pred             ------cCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC--CCccceeeccce---
Confidence                  3689999997644333  332 568999999875   455555432    2777774  434455666654   


Q ss_pred             CCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255          236 AGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (765)
Q Consensus       236 ~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt  312 (765)
                                ..++++|-|   =.+|.++++..+.-.        ..|  +.-|..+.+                    .
T Consensus       149 ----------~ins~~~KpsRPfRi~T~sdDn~v~ff--------eGP--PFKFk~s~r--------------------~  188 (603)
T KOG0318|consen  149 ----------RINSVDFKPSRPFRIATGSDDNTVAFF--------EGP--PFKFKSSFR--------------------E  188 (603)
T ss_pred             ----------eEeeeeccCCCceEEEeccCCCeEEEe--------eCC--Ceeeeeccc--------------------c
Confidence                      134566654   245666665322110        000  000000000                    0


Q ss_pred             ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec---cCCCCeEEEEECCCCCEEEEEEc
Q 004255          313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK---AHTSPISALCFDPSGTLLVTASV  389 (765)
Q Consensus       313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~---aH~~~IsaLaFSpdG~lLATaS~  389 (765)
                      =+++.         ...-++|++.    -.++++.||.|.|||=.+++.+..|.   +|++.|.+|+|+||++.|+|+|.
T Consensus       189 HskFV---------~~VRysPDG~----~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa  255 (603)
T KOG0318|consen  189 HSKFV---------NCVRYSPDGS----RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA  255 (603)
T ss_pred             cccce---------eeEEECCCCC----eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence            01111         1111222221    24567889999999999999999998   99999999999999999999999


Q ss_pred             CCCEEEEEeCCCCccc--------------------------CCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255          390 YGNNINIFRIMPSCMR--------------------------SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (765)
Q Consensus       390 dGt~IrVWdi~~~~~~--------------------------~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (765)
                       |+++||||+.+....                          +..|.-.+.-......+ +...|+ +..|++++.++|+
T Consensus       256 -Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~-~~i~GH-nK~ITaLtv~~d~  332 (603)
T KOG0318|consen  256 -DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL-KVISGH-NKSITALTVSPDG  332 (603)
T ss_pred             -CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh-heeccc-ccceeEEEEcCCC
Confidence             667999999764210                          01111000000011122 223353 4569999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCc-ccccccCC
Q 004255          444 QWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQ  475 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl~~~gg~~-~~~~h~~~  475 (765)
                      ++|.++|.||.|.=|++....... .-+.|+++
T Consensus       333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nq  365 (603)
T KOG0318|consen  333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQ  365 (603)
T ss_pred             CEEEeeccCceEEEEecCCccccccccccccce
Confidence            999999999999999997643322 22567654

>PTZ00420 coronin; Provisional

Probab=99.64  E-value=1.4e-13  Score=159.57  Aligned_cols=130  Identities=9%  Similarity=0.131  Sum_probs=98.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc-------ceEeeeeccCCEEEEEEecCCCCCCCC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN-------FNELVSKRDGPVSFLQMQPFPVKDDGC  123 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~-------~~ells~~dg~V~~v~~lP~p~~~~~~  123 (765)
                      ..+|++.|..+.|..-      .+.+|++|..+| ++|||+...+.       ....+..|.+.|..|++.|+.      
T Consensus        70 L~gH~~~V~~lafsP~------~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g------  137 (568)
T PTZ00420         70 LKGHTSSILDLQFNPC------FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN------  137 (568)
T ss_pred             EcCCCCCEEEEEEcCC------CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC------
Confidence            4567888888888651      145888888776 99999964332       223567888999999999741      


Q ss_pred             CCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC-
Q 004255          124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-  202 (765)
Q Consensus       124 d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~-  202 (765)
                            ..+|++ ++                                .+++|+|||+++++.+..+.++..|.++++++ 
T Consensus       138 ------~~iLaS-gS--------------------------------~DgtIrIWDl~tg~~~~~i~~~~~V~Slswspd  178 (568)
T PTZ00420        138 ------YYIMCS-SG--------------------------------FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK  178 (568)
T ss_pred             ------CeEEEE-Ee--------------------------------CCCeEEEEECCCCcEEEEEecCCcEEEEEECCC
Confidence                  124443 22                                13689999999999998888888999999987 


Q ss_pred             -CeEEEEe-CCeEEEEECCCCceeEEEEecCC
Q 004255          203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPV  232 (765)
Q Consensus       203 -~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~  232 (765)
                       ++|+++. +++|+|||+++++.+.++..|..
T Consensus       179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g  210 (568)
T PTZ00420        179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG  210 (568)
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEEecccC
Confidence             6777665 66899999999998888877654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=7.4e-14  Score=143.41  Aligned_cols=204  Identities=21%  Similarity=0.262  Sum_probs=153.7

Q ss_pred             eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 004255           98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF  177 (765)
Q Consensus        98 ~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~l  177 (765)
                      ...+++|.+.|..+++.|-            ++.+||.++                                 .+++||+
T Consensus         7 ~~~~~gh~~r~W~~awhp~------------~g~ilAscg---------------------------------~Dk~vri   41 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPG------------KGVILASCG---------------------------------TDKAVRI   41 (312)
T ss_pred             EEeecCCCCcEEEEEeccC------------CceEEEeec---------------------------------CCceEEE
Confidence            4578888899999999872            223666522                                 1479999


Q ss_pred             EECCC---CeEEEEEe-C-CCCEEEEEecC--CeEEEE-eCCeEEEEECC--CCceeEEEEecCCcccCCCCcccccccc
Q 004255          178 YSFQS---HCYEHVLR-F-RSSVCMVRCSP--RIVAVG-LATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       178 Wdlkt---g~~v~tL~-~-~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~--t~~~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      |++..   =.+...|. + .-.|.+|+++|  ++||++ ++.++.||.=.  ++++..+|.+|.+.             +
T Consensus        42 w~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE-------------V  108 (312)
T KOG0645|consen   42 WSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE-------------V  108 (312)
T ss_pred             EecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc-------------e
Confidence            99984   34555553 3 35899999987  889886 46689999644  56788889998873             3


Q ss_pred             ceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCC
Q 004255          248 GPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (765)
Q Consensus       248 ~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s  325 (765)
                      ..+|+++  +|||.++                                                                
T Consensus       109 K~Vaws~sG~~LATCS----------------------------------------------------------------  124 (312)
T KOG0645|consen  109 KCVAWSASGNYLATCS----------------------------------------------------------------  124 (312)
T ss_pred             eEEEEcCCCCEEEEee----------------------------------------------------------------
Confidence            4567765  5665554                                                                


Q ss_pred             CCCccCCCccccccccccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 004255          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS  402 (765)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~---~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~  402 (765)
                                           .|..|-||.+..+   .++..|+.|+.-|-.+.|+|.-.+|+|+|-|. +||+|+-.+.
T Consensus       125 ---------------------RDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~d  182 (312)
T KOG0645|consen  125 ---------------------RDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDD  182 (312)
T ss_pred             ---------------------CCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC-eEEEEeecCC
Confidence                                 3556778877643   57889999999999999999999999999955 6999986431


Q ss_pred             cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       403 ~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                            +    +|    .++.+|. |++ ..|++++|+++|..|+++++|+|++||..-
T Consensus       183 ------d----dW----~c~~tl~-g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  183 ------D----DW----ECVQTLD-GHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             ------C----Ce----eEEEEec-Ccc-ceEEEEEecCCCceEEEecCCcceEeeeec
Confidence                  1    22    4666664 444 379999999999999999999999999864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.3e-13  Score=141.71  Aligned_cols=259  Identities=14%  Similarity=0.147  Sum_probs=170.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCC--CcceEeee-eccCCEEEEEEecCCCCCCCCCCcc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDA--SNFNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~--g~~~ells-~~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      .+++||++--+.|..-      .+.+|++|..+ .++||+....  =.++.+++ .|...|+.+++.|-           
T Consensus        10 ~~gh~~r~W~~awhp~------~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~-----------   72 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPG------KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH-----------   72 (312)
T ss_pred             ecCCCCcEEEEEeccC------CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC-----------
Confidence            5678888877777651      15689988876 5999999632  23454553 46678999999984           


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEeCC-CCEEEEEecC--
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP--  202 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg--~~v~tL~~~-s~V~sV~~s~--  202 (765)
                        ..+||..+-                                 +.++.||.-..+  +++.+|+.| +.|.+|++++  
T Consensus        73 --g~~La~aSF---------------------------------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG  117 (312)
T KOG0645|consen   73 --GRYLASASF---------------------------------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG  117 (312)
T ss_pred             --CcEEEEeec---------------------------------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCC
Confidence              227765221                                 358899976644  688999876 6999999986  


Q ss_pred             CeEEEEeCC-eEEEEECCCC---ceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCC
Q 004255          203 RIVAVGLAT-QIYCFDALTL---ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQN  276 (765)
Q Consensus       203 ~~LaV~~~~-~I~iwD~~t~---~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~  276 (765)
                      ++||.+.-+ .|-||.+...   ++.-.|..|.-         ++    .-+.+.|  ..                    
T Consensus       118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq---------DV----K~V~WHPt~dl--------------------  164 (312)
T KOG0645|consen  118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ---------DV----KHVIWHPTEDL--------------------  164 (312)
T ss_pred             CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc---------cc----cEEEEcCCcce--------------------
Confidence            899998754 6999987633   23333433332         00    1122222  11                    


Q ss_pred             CCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255          277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF  356 (765)
Q Consensus       277 lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl  356 (765)
                                                                                       ++++++|.+|++|+-
T Consensus       165 -----------------------------------------------------------------L~S~SYDnTIk~~~~  179 (312)
T KOG0645|consen  165 -----------------------------------------------------------------LFSCSYDNTIKVYRD  179 (312)
T ss_pred             -----------------------------------------------------------------eEEeccCCeEEEEee
Confidence                                                                             224567888999976


Q ss_pred             CC---CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc-cccC---------CcceEEE
Q 004255          357 VT---RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK-YDWN---------SSHVHLY  423 (765)
Q Consensus       357 ~s---~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~-~~~~---------~s~~~l~  423 (765)
                      ..   -.++++|.+|...|.+++|++.|..|++|+.|++ ++||.....-..-.++... ..|.         .....+|
T Consensus       180 ~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf  258 (312)
T KOG0645|consen  180 EDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLF  258 (312)
T ss_pred             cCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEE
Confidence            62   2588999999999999999999999999999665 9999843211000001000 0010         0001111


Q ss_pred             EEe--------------cccccccEEEEEEccC-CCEEEEEeCCCcEEEEeCC
Q 004255          424 KLH--------------RGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       424 ~l~--------------rG~~~a~I~slaFSpD-g~~Las~S~dgTVhIwdl~  461 (765)
                      +-.              .+.|...|.+++|.|. ...|+++++||+|++|.+.
T Consensus       259 ~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  259 KESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            111              1223346999999995 6899999999999999874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.63  E-value=1.2e-14  Score=155.81  Aligned_cols=282  Identities=15%  Similarity=0.140  Sum_probs=180.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK  128 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~--~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~  128 (765)
                      .++++|+|=++.|-.       .++.||+++.+. .-||++.....  +..++-+|..+|..+.++|+            
T Consensus       220 l~~htdEVWfl~FS~-------nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD------------  280 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSH-------NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD------------  280 (519)
T ss_pred             HhhCCCcEEEEEEcC-------CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC------------
Confidence            567899999888844       588999999885 67888865443  35677888899999999995            


Q ss_pred             cCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CCEEEEEecC--Ce
Q 004255          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RI  204 (765)
Q Consensus       129 srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~--s~V~sV~~s~--~~  204 (765)
                      .|.||+ ++.                                 +..+++||..+|++.+.+...  ..+.+++..|  ..
T Consensus       281 dryLla-Cg~---------------------------------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~  326 (519)
T KOG0293|consen  281 DRYLLA-CGF---------------------------------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR  326 (519)
T ss_pred             CCeEEe-cCc---------------------------------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce
Confidence            344543 222                                 135999999999999988754  4777888777  34


Q ss_pred             EEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCC
Q 004255          205 VAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       205 LaV-~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                      +++ +.+.+|.-||+.. ..+...++-..|            -...+|+.+  +|+-....+..+.              
T Consensus       327 ~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~------------~v~dlait~Dgk~vl~v~~d~~i~--------------  379 (519)
T KOG0293|consen  327 FVTGSPDRTIIMWDLDG-NILGNWEGVRDP------------KVHDLAITYDGKYVLLVTVDKKIR--------------  379 (519)
T ss_pred             eEecCCCCcEEEecCCc-chhhcccccccc------------eeEEEEEcCCCcEEEEEeccccee--------------
Confidence            555 4566899999753 333333321111            123466665  4443333221110              


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~  361 (765)
                                    -|.++.-  +-.|++.+-..          .-.++.+.+++..-    ..-.+..+++||++..+.
T Consensus       380 --------------l~~~e~~--~dr~lise~~~----------its~~iS~d~k~~L----vnL~~qei~LWDl~e~~l  429 (519)
T KOG0293|consen  380 --------------LYNREAR--VDRGLISEEQP----------ITSFSISKDGKLAL----VNLQDQEIHLWDLEENKL  429 (519)
T ss_pred             --------------eechhhh--hhhccccccCc----------eeEEEEcCCCcEEE----EEcccCeeEEeecchhhH
Confidence                          0000000  00011000000          00111122222211    123567899999999899


Q ss_pred             EEEeccCCCC--eEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 004255          362 ISQFKAHTSP--ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (765)
Q Consensus       362 i~~~~aH~~~--IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (765)
                      +..+.||+..  |-.-||-- +.+++|+||+|++ |+||+...       |          ..+.+|. |+. ..|.+++
T Consensus       430 v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~s-------g----------kll~~Ls-GHs-~~vNcVs  489 (519)
T KOG0293|consen  430 VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRIS-------G----------KLLAVLS-GHS-KTVNCVS  489 (519)
T ss_pred             HHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccC-------C----------ceeEeec-CCc-ceeeEEe
Confidence            9999999753  44456754 5689999999665 99999755       4          4666774 654 4699999


Q ss_pred             EccCC-CEEEEEeCCCcEEEEeCCCC
Q 004255          439 FSHYS-QWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       439 FSpDg-~~Las~S~dgTVhIwdl~~~  463 (765)
                      |+|.. .++|++|+||||+||.+.+.
T Consensus       490 wNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  490 WNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             cCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99976 67999999999999998764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=2e-14  Score=146.46  Aligned_cols=229  Identities=15%  Similarity=0.150  Sum_probs=155.6

Q ss_pred             EEEEEccCCCcceEeeeec-cCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCC
Q 004255           86 FQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQ  164 (765)
Q Consensus        86 ~qVWdv~~~g~~~ells~~-dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~  164 (765)
                      +-|.+++....+.+..+-. ...+..|++.++-          .+  .+++++||                         
T Consensus        40 L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~----------e~--~~~~a~GD-------------------------   82 (311)
T KOG0277|consen   40 LFILEVTDPKGIQECQSYDTEDGLFDVAWSENH----------EN--QVIAASGD-------------------------   82 (311)
T ss_pred             EEEEecCCCCCeEEEEeeecccceeEeeecCCC----------cc--eEEEEecC-------------------------
Confidence            6777775455565554432 2468889998641          22  44444443                         


Q ss_pred             CCCCCCCCCEEEEEECC-CCeEEEEEe-CCCCEEEEEecC----CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCC
Q 004255          165 SGNCVNSPTAVRFYSFQ-SHCYEHVLR-FRSSVCMVRCSP----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQ  238 (765)
Q Consensus       165 ~~~~~~~p~tV~lWdlk-tg~~v~tL~-~~s~V~sV~~s~----~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~  238 (765)
                              +.++|||+. ....++.++ +..+|++|..|.    .+|..+.+++|++||..-.+-+.|..+|..      
T Consensus        83 --------GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~------  148 (311)
T KOG0277|consen   83 --------GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS------  148 (311)
T ss_pred             --------ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc------
Confidence                    589999974 335677775 456999999886    345556788999999876666666554332      


Q ss_pred             CccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccc
Q 004255          239 GAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ  318 (765)
Q Consensus       239 ~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~  318 (765)
                                        +.|...                       ++|....                          
T Consensus       149 ------------------~Iy~a~-----------------------~sp~~~n--------------------------  161 (311)
T KOG0277|consen  149 ------------------CIYQAA-----------------------FSPHIPN--------------------------  161 (311)
T ss_pred             ------------------EEEEEe-----------------------cCCCCCC--------------------------
Confidence                              112110                       0111000                          


Q ss_pred             ccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEE
Q 004255          319 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIF  397 (765)
Q Consensus       319 ~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVW  397 (765)
                                            -.++++.||+++|||++.......|.+|...|.++.|+. +-.+|||++.| +.||+|
T Consensus       162 ----------------------lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd-~~vr~w  218 (311)
T KOG0277|consen  162 ----------------------LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVD-NLVRGW  218 (311)
T ss_pred             ----------------------eEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCC-ceEEEE
Confidence                                  012446789999999987555555999999999999997 67789999995 569999


Q ss_pred             eCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCC-Cccccccc
Q 004255          398 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG-DSGFQTLS  473 (765)
Q Consensus       398 di~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg-~~~~~~h~  473 (765)
                      |++..      .          .++.+|. |+. -.|..+.|||.. ..||++|-|=|++|||...... ......|+
T Consensus       219 Dir~~------r----------~pl~eL~-gh~-~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht  278 (311)
T KOG0277|consen  219 DIRNL------R----------TPLFELN-GHG-LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT  278 (311)
T ss_pred             ehhhc------c----------ccceeec-CCc-eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence            99652      1          5788884 543 359999999975 6899999999999999874333 33445554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.60  E-value=8.3e-14  Score=151.27  Aligned_cols=112  Identities=19%  Similarity=0.342  Sum_probs=83.9

Q ss_pred             cccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc--ccCCc
Q 004255          343 ADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY--DWNSS  418 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~--~~~~s  418 (765)
                      ++++.|++|.|||+++. +++.+|.+|...|..|.|||. .+.|||++.|+. +.|||+..-      |....  +-...
T Consensus       289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~i------g~eq~~eda~dg  361 (422)
T KOG0264|consen  289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRI------GEEQSPEDAEDG  361 (422)
T ss_pred             EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEecccc------ccccChhhhccC
Confidence            35567999999999985 478899999999999999995 678999998765 899999542      21110  00111


Q ss_pred             ceEEEEEecccccccEEEEEEccCCCE-EEEEeCCCcEEEEeCCC
Q 004255          419 HVHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg~~-Las~S~dgTVhIwdl~~  462 (765)
                      ...+.-.++|++ +.|.+++|+|.--| ||+++.|+.++||....
T Consensus       362 ppEllF~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  362 PPELLFIHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CcceeEEecCcc-cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            123333466754 67999999999877 68889999999999863

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=1.3e-14  Score=162.49  Aligned_cols=240  Identities=18%  Similarity=0.158  Sum_probs=163.3

Q ss_pred             CCCeEEEEEecCc-EEEEEccCCCc-----ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCC
Q 004255           73 VFKQVLLLGYQNG-FQVLDVEDASN-----FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAP  146 (765)
Q Consensus        73 ~~~~vL~~G~~~G-~qVWdv~~~g~-----~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~  146 (765)
                      ..++.|.+|.++| |++|++....+     ....+..|..+|..+.+.-+            ++ .|..++         
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~------------~~-tlIS~S---------   92 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN------------GK-TLISAS---------   92 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC------------CC-ceEEec---------
Confidence            3466888888888 89999954333     23446677788888776522            22 333322         


Q ss_pred             CCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEe-CCCCEEEEEe---cCCeEEE-EeCCeEEEEECC
Q 004255          147 GQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLR-FRSSVCMVRC---SPRIVAV-GLATQIYCFDAL  219 (765)
Q Consensus       147 ~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg--~~v~tL~-~~s~V~sV~~---s~~~LaV-~~~~~I~iwD~~  219 (765)
                                              ++++|++|+...+  -+..+|+ +...|.+++.   +..++|. |++.+|++||+.
T Consensus        93 ------------------------sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin  148 (735)
T KOG0308|consen   93 ------------------------SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN  148 (735)
T ss_pred             ------------------------CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence                                    3579999999877  5666775 4568887776   3345554 568899999999


Q ss_pred             CCce--eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeee
Q 004255          220 TLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY  297 (765)
Q Consensus       220 t~~~--l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~  297 (765)
                      ++..  ..+...-+.               ..+..||+       +.                               .|
T Consensus       149 ~~~~~l~~s~n~~t~---------------~sl~sG~k-------~s-------------------------------iY  175 (735)
T KOG0308|consen  149 TGTATLVASFNNVTV---------------NSLGSGPK-------DS-------------------------------IY  175 (735)
T ss_pred             Ccchhhhhhcccccc---------------ccCCCCCc-------cc-------------------------------ee
Confidence            8732  222111000               00000110       00                               00


Q ss_pred             hhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 004255          298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF  377 (765)
Q Consensus       298 a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaF  377 (765)
                      +                              +.-|+.+    .-++.|+..+.+++||.++++.+..|+||+..|.+|-.
T Consensus       176 S------------------------------LA~N~t~----t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~  221 (735)
T KOG0308|consen  176 S------------------------------LAMNQTG----TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV  221 (735)
T ss_pred             e------------------------------eecCCcc----eEEEecCcccceEEeccccccceeeeeccccceEEEEE
Confidence            0                              0001000    11345678899999999999999999999999999999


Q ss_pred             CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255          378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV  457 (765)
Q Consensus       378 SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhI  457 (765)
                      ++||+.++|||.||+ |||||+...                 +++..+.-  |...||++.-+|+=+.+.+|+.||.|..
T Consensus       222 ~dDGt~~ls~sSDgt-IrlWdLgqQ-----------------rCl~T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~  281 (735)
T KOG0308|consen  222 NDDGTRLLSASSDGT-IRLWDLGQQ-----------------RCLATYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYR  281 (735)
T ss_pred             cCCCCeEeecCCCce-EEeeecccc-----------------ceeeeEEe--ccCceEEEeeCCCcceEEecCCCCcEEe
Confidence            999999999999775 999999431                 56666642  3345999999999999999999999999


Q ss_pred             EeCCCCCC
Q 004255          458 FVLSPFGG  465 (765)
Q Consensus       458 wdl~~~gg  465 (765)
                      =|+..+..
T Consensus       282 Tdl~n~~~  289 (735)
T KOG0308|consen  282 TDLRNPAK  289 (735)
T ss_pred             cccCCchh
Confidence            88887643

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=5.6e-14  Score=146.52  Aligned_cols=228  Identities=18%  Similarity=0.255  Sum_probs=149.2

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL  134 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLa  134 (765)
                      +..-++-+.|--       ..+++..|.++.++++|++ ++ -...+..|+++|++|+..+-           ..  .+ 
T Consensus        53 ~~~plL~c~F~d-------~~~~~~G~~dg~vr~~Dln-~~-~~~~igth~~~i~ci~~~~~-----------~~--~v-  109 (323)
T KOG1036|consen   53 HGAPLLDCAFAD-------ESTIVTGGLDGQVRRYDLN-TG-NEDQIGTHDEGIRCIEYSYE-----------VG--CV-  109 (323)
T ss_pred             cCCceeeeeccC-------CceEEEeccCceEEEEEec-CC-cceeeccCCCceEEEEeecc-----------CC--eE-
Confidence            445566666632       1345555555569999994 44 45678889999999998841           12  33 


Q ss_pred             EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEe-CCeE
Q 004255          135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQI  213 (765)
Q Consensus       135 vv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~-~~~I  213 (765)
                       ++|                     +||          ++|+|||.+....+.++.-...|+++..+.++|+||. +.+|
T Consensus       110 -Isg---------------------sWD----------~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v  157 (323)
T KOG1036|consen  110 -ISG---------------------SWD----------KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKV  157 (323)
T ss_pred             -EEc---------------------ccC----------ccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceE
Confidence             333                     454          6999999998777777777779999999998888855 5679


Q ss_pred             EEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcc
Q 004255          214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSL  293 (765)
Q Consensus       214 ~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gsl  293 (765)
                      .+||+++++..+..++.+.           ++....+++-|.-=.|      ..                          
T Consensus       158 ~iyDLRn~~~~~q~reS~l-----------kyqtR~v~~~pn~eGy------~~--------------------------  194 (323)
T KOG1036|consen  158 LIYDLRNLDEPFQRRESSL-----------KYQTRCVALVPNGEGY------VV--------------------------  194 (323)
T ss_pred             EEEEcccccchhhhccccc-----------eeEEEEEEEecCCCce------EE--------------------------
Confidence            9999999987665554433           2223334432210011      00                          


Q ss_pred             eeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC----cEEEEeccCC
Q 004255          294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR----AIISQFKAHT  369 (765)
Q Consensus       294 va~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~----~~i~~~~aH~  369 (765)
                                                                         ++.+|.|.+=.+...    +....|++|.
T Consensus       195 ---------------------------------------------------sSieGRVavE~~d~s~~~~skkyaFkCHr  223 (323)
T KOG1036|consen  195 ---------------------------------------------------SSIEGRVAVEYFDDSEEAQSKKYAFKCHR  223 (323)
T ss_pred             ---------------------------------------------------EeecceEEEEccCCchHHhhhceeEEeee
Confidence                                                               011222222111111    1222344442


Q ss_pred             ---------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 004255          370 ---------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (765)
Q Consensus       370 ---------~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (765)
                               -||++|+|+|--..||||+.|| .|.+||+.+-                 +++.+|.+-  ...|-+++|+
T Consensus       224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG-~V~~Wd~~~r-----------------Krl~q~~~~--~~SI~slsfs  283 (323)
T KOG1036|consen  224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDG-IVNIWDLFNR-----------------KRLKQLAKY--ETSISSLSFS  283 (323)
T ss_pred             cccCCceEEEEeceeEeccccceEEecCCCc-eEEEccCcch-----------------hhhhhccCC--CCceEEEEec
Confidence                     2899999999988899999977 5999998541                 466777642  2359999999


Q ss_pred             cCCCEEEEEeC
Q 004255          441 HYSQWIAIVSS  451 (765)
Q Consensus       441 pDg~~Las~S~  451 (765)
                      .||..||++++
T Consensus       284 ~dG~~LAia~s  294 (323)
T KOG1036|consen  284 MDGSLLAIASS  294 (323)
T ss_pred             cCCCeEEEEec
Confidence            99999999974

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.59  E-value=1.8e-13  Score=145.75  Aligned_cols=222  Identities=15%  Similarity=0.171  Sum_probs=154.5

Q ss_pred             EEEEEecC-cEEEEEccCCCcceEee---eeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           77 VLLLGYQN-GFQVLDVEDASNFNELV---SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        77 vL~~G~~~-G~qVWdv~~~g~~~ell---s~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .|+++..+ .+++|-.+...+..+.+   .+|.++|.+|...++.           .  .+  +++              
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-----------t--r~--~Sg--------------  211 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-----------T--RF--CSG--------------  211 (423)
T ss_pred             eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-----------C--eE--Eee--------------
Confidence            45555555 59999987655444433   3788899999988541           1  22  222              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECC-------------------------CCeEEEEEeCC-CCEEEEEecCC--e
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-------------------------SHCYEHVLRFR-SSVCMVRCSPR--I  204 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlk-------------------------tg~~v~tL~~~-s~V~sV~~s~~--~  204 (765)
                             +|          +++|+||+..                         ++..+-+|..| .+|.+|.+++.  +
T Consensus       212 -------S~----------D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~  274 (423)
T KOG0313|consen  212 -------SW----------DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVI  274 (423)
T ss_pred             -------cc----------cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCce
Confidence                   33          4789999921                         22344555544 68999999873  3


Q ss_pred             EEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCC
Q 004255          205 VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (765)
Q Consensus       205 LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~  282 (765)
                      ..++.|.+|+.||+.++++.-++.+...              ...++.+|  ++||                        
T Consensus       275 yS~SwDHTIk~WDletg~~~~~~~~~ks--------------l~~i~~~~~~~Ll~------------------------  316 (423)
T KOG0313|consen  275 YSVSWDHTIKVWDLETGGLKSTLTTNKS--------------LNCISYSPLSKLLA------------------------  316 (423)
T ss_pred             EeecccceEEEEEeecccceeeeecCcc--------------eeEeecccccceee------------------------
Confidence            3456778999999999998887765322              22333332  2222                        


Q ss_pred             CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc--
Q 004255          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--  360 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~--  360 (765)
                                                                                   .++.|..++|||-+++.  
T Consensus       317 -------------------------------------------------------------~gssdr~irl~DPR~~~gs  335 (423)
T KOG0313|consen  317 -------------------------------------------------------------SGSSDRHIRLWDPRTGDGS  335 (423)
T ss_pred             -------------------------------------------------------------ecCCCCceeecCCCCCCCc
Confidence                                                                         23456678888877653  


Q ss_pred             -EEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 004255          361 -IISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (765)
Q Consensus       361 -~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (765)
                       +..+|.+|++.|.++.++|... +|+++|.|+ ++++||++..     .           ..||.+.+  +...|.++.
T Consensus       336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~-t~klWDvRS~-----k-----------~plydI~~--h~DKvl~vd  396 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN-TVKLWDVRST-----K-----------APLYDIAG--HNDKVLSVD  396 (423)
T ss_pred             eeEEeeecchhhhhheecCCCCceEEEEEecCC-eEEEEEeccC-----C-----------Ccceeecc--CCceEEEEe
Confidence             5667999999999999999655 578888865 5999999652     1           37899975  356799999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          439 FSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       439 FSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      |+ ++..|++|+.|.+++||.-.+.
T Consensus       397 W~-~~~~IvSGGaD~~l~i~~~~~~  420 (423)
T KOG0313|consen  397 WN-EGGLIVSGGADNKLRIFKGSPI  420 (423)
T ss_pred             cc-CCceEEeccCcceEEEeccccc
Confidence            98 5679999999999999976543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.58  E-value=1.9e-13  Score=161.04  Aligned_cols=249  Identities=16%  Similarity=0.170  Sum_probs=172.8

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC------CCc-----------ceEeeeeccCCEEEEEEec
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED------ASN-----------FNELVSKRDGPVSFLQMQP  115 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~------~g~-----------~~ells~~dg~V~~v~~lP  115 (765)
                      ++...|.+++|-.       +++.|+.|+++. +.||.-..      -+.           +..++.+|++.|..+.+.|
T Consensus        67 ~h~~sv~CVR~S~-------dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   67 DHDGSVNCVRFSP-------DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             cccCceeEEEECC-------CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            3555677888754       588999999998 79999862      111           4567888999999999998


Q ss_pred             CCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CC
Q 004255          116 FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SS  194 (765)
Q Consensus       116 ~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~  194 (765)
                      +           ++  +||.++.                                 +++|.|||.++.+.+..++.| +.
T Consensus       140 ~-----------~~--~lvS~s~---------------------------------DnsViiwn~~tF~~~~vl~~H~s~  173 (942)
T KOG0973|consen  140 D-----------DS--LLVSVSL---------------------------------DNSVIIWNAKTFELLKVLRGHQSL  173 (942)
T ss_pred             C-----------cc--EEEEecc---------------------------------cceEEEEccccceeeeeeeccccc
Confidence            5           23  6765432                                 469999999999999999865 68


Q ss_pred             EEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCC
Q 004255          195 VCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNS  269 (765)
Q Consensus       195 V~sV~~s~--~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~  269 (765)
                      |..|.+.|  +++|+- .|..|++|+..+....+++..+-..   +++..    -+..+.+||  .+||.+.        
T Consensus       174 VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~---~~~~T----~f~RlSWSPDG~~las~n--------  238 (942)
T KOG0973|consen  174 VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE---SPLTT----FFLRLSWSPDGHHLASPN--------  238 (942)
T ss_pred             ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh---CCCcc----eeeecccCCCcCeecchh--------
Confidence            99999998  899985 4557999998887676766542210   00000    011122222  2222211        


Q ss_pred             ccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCC
Q 004255          270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG  349 (765)
Q Consensus       270 G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG  349 (765)
                                                                                               +.-...-
T Consensus       239 -------------------------------------------------------------------------A~n~~~~  245 (942)
T KOG0973|consen  239 -------------------------------------------------------------------------AVNGGKS  245 (942)
T ss_pred             -------------------------------------------------------------------------hccCCcc
Confidence                                                                                     0001122


Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECC--------CC-----C----EEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDP--------SG-----T----LLVTASVYGNNINIFRIMPSCMRSGSGNHK  412 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp--------dG-----~----lLATaS~dGt~IrVWdi~~~~~~~~sG~~~  412 (765)
                      ++.|.+-.+-+.-..|-+|.+|+.+++|+|        +|     +    .+|+||.|+ .|-||....           
T Consensus       246 ~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr-SlSVW~T~~-----------  313 (942)
T KOG0973|consen  246 TIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR-SLSVWNTAL-----------  313 (942)
T ss_pred             eeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc-cEEEEecCC-----------
Confidence            566666666677778999999999999998        12     1    578888865 599999732           


Q ss_pred             cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                            .++++..+. ..+..|.+++|||||.-|.++|.||||.++..+.
T Consensus       314 ------~RPl~vi~~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  314 ------PRPLFVIHN-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ------CCchhhhhh-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence                  134443321 2235699999999999999999999999998864

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.58  E-value=1.8e-13  Score=145.84  Aligned_cols=264  Identities=14%  Similarity=0.121  Sum_probs=165.8

Q ss_pred             CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEE-EecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQ-MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~-~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      +.+|..+|++-.+|||.  .|++..++.+|.++++.+. +.+++.           ..++++ ++               
T Consensus       116 ~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~-----------~~~fvs-as---------------  166 (423)
T KOG0313|consen  116 KWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSS-----------SCLFVS-AS---------------  166 (423)
T ss_pred             ceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCc-----------cceEEE-ec---------------
Confidence            56666667777999998  5899999999999999554 444432           123433 21               


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE----eC-CCCEEEEEecC--CeEEE-EeCCeEEEEECCCCceeE
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL----RF-RSSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKF  225 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL----~~-~s~V~sV~~s~--~~LaV-~~~~~I~iwD~~t~~~l~  225 (765)
                                       .++++++|-.+.++.+-..    +. ...|-+|+.++  .+++. +.|..|.||+.. .+..-
T Consensus       167 -----------------~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~-~~~~~  228 (423)
T KOG0313|consen  167 -----------------MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE-TDEED  228 (423)
T ss_pred             -----------------CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccC-CCccc
Confidence                             2479999999888754333    13 35888998766  44554 456789999932 22223


Q ss_pred             EEEecCCcccCCCCccccccccceeEEccceEEEec-CCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhh
Q 004255          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYAS-NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ  304 (765)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas-~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~  304 (765)
                      ++....+.....+           ..     --.++ ..|++                                      
T Consensus       229 ~~E~~s~~rrk~~-----------~~-----~~~~~~r~P~v--------------------------------------  254 (423)
T KOG0313|consen  229 ELESSSNRRRKKQ-----------KR-----EKEGGTRTPLV--------------------------------------  254 (423)
T ss_pred             cccccchhhhhhh-----------hh-----hhcccccCceE--------------------------------------
Confidence            3332222100000           00     00000 00000                                      


Q ss_pred             hhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 004255          305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL  384 (765)
Q Consensus       305 la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lL  384 (765)
                             +|.+|...      ++++.+.+     ...+.+++.|.+|++||+.++..+.++.+. .+++++..+|...+|
T Consensus       255 -------tl~GHt~~------Vs~V~w~d-----~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll  315 (423)
T KOG0313|consen  255 -------TLEGHTEP------VSSVVWSD-----ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLL  315 (423)
T ss_pred             -------Eecccccc------eeeEEEcC-----CCceEeecccceEEEEEeecccceeeeecC-cceeEeeccccccee
Confidence                   11111110      00000000     001235678999999999999998888765 579999999999999


Q ss_pred             EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC
Q 004255          385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       385 ATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~Las~S~dgTVhIwdl~~~  463 (765)
                      |+||.| ..|||||-+..     +|.         ...+.| -|+. ..|.++.|+|... .|+++|.|+|+++||+...
T Consensus       316 ~~gssd-r~irl~DPR~~-----~gs---------~v~~s~-~gH~-nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  316 ASGSSD-RHIRLWDPRTG-----DGS---------VVSQSL-IGHK-NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             eecCCC-CceeecCCCCC-----CCc---------eeEEee-ecch-hhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence            999995 56999997541     221         233444 3654 4899999999875 5899999999999999887


Q ss_pred             CC-CcccccccCC
Q 004255          464 GG-DSGFQTLSSQ  475 (765)
Q Consensus       464 gg-~~~~~~h~~~  475 (765)
                      .+ ..++.+|+.+
T Consensus       379 k~plydI~~h~DK  391 (423)
T KOG0313|consen  379 KAPLYDIAGHNDK  391 (423)
T ss_pred             CCcceeeccCCce
Confidence            74 4577888644

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.58  E-value=1.3e-14  Score=155.64  Aligned_cols=231  Identities=12%  Similarity=0.113  Sum_probs=162.9

Q ss_pred             eEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           76 QVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        76 ~vL~~G~~~G-~qVWdv~~~g-~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      ..|+.|..+. |++|++.... ++..+|.+..|++..+.+-+.            .+..||.  +               
T Consensus       188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~------------~~~~iAa--s---------------  238 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD------------NKHVIAA--S---------------  238 (459)
T ss_pred             chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC------------CceEEee--c---------------
Confidence            3677776664 9999995322 255667777889999998752            3345543  1               


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCC--eEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~--~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                                       .++.+++|++...+..++|..| ..|+++.|...  .++.+. +.+|++||+....|..++.-
T Consensus       239 -----------------~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~  301 (459)
T KOG0288|consen  239 -----------------NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP  301 (459)
T ss_pred             -----------------CCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc
Confidence                             1368999999999999999976 59999998762  244443 45799999988766555431


Q ss_pred             cCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccc
Q 004255          230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL  309 (765)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~  309 (765)
                      -..          +    .-+.+       ...                                               
T Consensus       302 ~S~----------c----nDI~~-------~~~-----------------------------------------------  313 (459)
T KOG0288|consen  302 GSQ----------C----NDIVC-------SIS-----------------------------------------------  313 (459)
T ss_pred             ccc----------c----cceEe-------cce-----------------------------------------------
Confidence            000          0    00000       000                                               


Q ss_pred             ceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 004255          310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV  389 (765)
Q Consensus       310 ~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~  389 (765)
                                                     ...++..|+.|+.||+.+..+......|. .|++|..+++|..|.+++.
T Consensus       314 -------------------------------~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR  361 (459)
T KOG0288|consen  314 -------------------------------DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR  361 (459)
T ss_pred             -------------------------------eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC
Confidence                                           01134568899999999999999998885 9999999999999999999


Q ss_pred             CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc-ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcc
Q 004255          390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG  468 (765)
Q Consensus       390 dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~-~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~  468 (765)
                      |++ ++|+|+++.      .         ..+.|... |. .....+.+.||||+.|+|+||.||.|+||++...+.+-.
T Consensus       362 Ddt-l~viDlRt~------e---------I~~~~sA~-g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~  424 (459)
T KOG0288|consen  362 DDT-LKVIDLRTK------E---------IRQTFSAE-GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV  424 (459)
T ss_pred             CCc-eeeeecccc------c---------EEEEeecc-ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence            765 999999653      1         12333322 21 223578899999999999999999999999987665543


Q ss_pred             c
Q 004255          469 F  469 (765)
Q Consensus       469 ~  469 (765)
                      +
T Consensus       425 l  425 (459)
T KOG0288|consen  425 L  425 (459)
T ss_pred             e
Confidence            3

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.58  E-value=2.1e-13  Score=141.92  Aligned_cols=255  Identities=18%  Similarity=0.175  Sum_probs=167.5

Q ss_pred             Ccceeeeccccccccceeccc-CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCE
Q 004255           30 ASTVASTVRSAGASVAASISN-ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPV  108 (765)
Q Consensus        30 ~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V  108 (765)
                      |++=..+||--....+|.... .-..+...|+.+.|..    |+  .+|++.|.++..++||+. ++ ....+..|+++|
T Consensus        45 A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd----dg--skVf~g~~Dk~~k~wDL~-S~-Q~~~v~~Hd~pv  116 (347)
T KOG0647|consen   45 AGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD----DG--SKVFSGGCDKQAKLWDLA-SG-QVSQVAAHDAPV  116 (347)
T ss_pred             ecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc----CC--ceEEeeccCCceEEEEcc-CC-Ceeeeeecccce
Confidence            444555666553333333322 1234566788777755    32  456666666679999995 45 446688999999


Q ss_pred             EEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEE
Q 004255          109 SFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV  188 (765)
Q Consensus       109 ~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~t  188 (765)
                      +.+.+.+.+.           .++|+.                       |+||          +||++||++....+.+
T Consensus       117 kt~~wv~~~~-----------~~cl~T-----------------------GSWD----------KTlKfWD~R~~~pv~t  152 (347)
T KOG0647|consen  117 KTCHWVPGMN-----------YQCLVT-----------------------GSWD----------KTLKFWDTRSSNPVAT  152 (347)
T ss_pred             eEEEEecCCC-----------cceeEe-----------------------cccc----------cceeecccCCCCeeee
Confidence            9999997532           235532                       4565          6999999999999999


Q ss_pred             EeCCCCEEEEEecCCeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceec
Q 004255          189 LRFRSSVCMVRCSPRIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLS  267 (765)
Q Consensus       189 L~~~s~V~sV~~s~~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~  267 (765)
                      +..+.+||++.+-..+++|++.+ .|.+|++++....+.....|..                  +-.|-+|...+.... 
T Consensus       153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk------------------~Q~R~va~f~d~~~~-  213 (347)
T KOG0647|consen  153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLK------------------WQTRCVACFQDKDGF-  213 (347)
T ss_pred             eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccc------------------ceeeEEEEEecCCce-
Confidence            99999999999988888888766 5999999876544433333321                  111334433221000 


Q ss_pred             CCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCC
Q 004255          268 NSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDN  347 (765)
Q Consensus       268 ~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~  347 (765)
                                                                                                 +-++.
T Consensus       214 ---------------------------------------------------------------------------alGsi  218 (347)
T KOG0647|consen  214 ---------------------------------------------------------------------------ALGSI  218 (347)
T ss_pred             ---------------------------------------------------------------------------Eeeee
Confidence                                                                                       01123


Q ss_pred             CCeEEEEECCCC--cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccC
Q 004255          348 AGIVVVKDFVTR--AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN  416 (765)
Q Consensus       348 dG~V~IwDl~s~--~~i~~~~aH~~---------~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~  416 (765)
                      .|.|-|..+..+  +.-.+|++|..         +|+.|+|+|.-..|||++.||+ +..||-..       .       
T Consensus       219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkda-------r-------  283 (347)
T KOG0647|consen  219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDA-------R-------  283 (347)
T ss_pred             cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchh-------h-------
Confidence            455555555544  33445667752         5788999999889999999886 99999632       1       


Q ss_pred             CcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255          417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (765)
Q Consensus       417 ~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S  450 (765)
                         .+|....  .+...|++++|+.+|.++|-+.
T Consensus       284 ---~kLk~s~--~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  284 ---TKLKTSE--THPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ---hhhhccC--cCCCccceeEecCCCCEEEEEe
Confidence               2343322  2456899999999999887653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.58  E-value=2.5e-13  Score=139.26  Aligned_cols=212  Identities=14%  Similarity=0.129  Sum_probs=155.4

Q ss_pred             eeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEE
Q 004255          100 LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYS  179 (765)
Q Consensus       100 lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWd  179 (765)
                      ++.+|+-|+..|++.-             ...||..++-                                 +.+..+|-
T Consensus         5 ~l~GHERplTqiKyN~-------------eGDLlFscaK---------------------------------D~~~~vw~   38 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNR-------------EGDLLFSCAK---------------------------------DSTPTVWY   38 (327)
T ss_pred             ccccCccccceEEecC-------------CCcEEEEecC---------------------------------CCCceEEE
Confidence            4667888999999873             3458765432                                 34778999


Q ss_pred             CCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-
Q 004255          180 FQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-  254 (765)
Q Consensus       180 lktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-  254 (765)
                      ..+|+.+.+++.| +.|+++..+.  +.|+.|.+ ..+++||+.+++++.++.+...              +..+.|+. 
T Consensus        39 s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~--------------Vk~~~F~~~  104 (327)
T KOG0643|consen   39 SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSP--------------VKRVDFSFG  104 (327)
T ss_pred             ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCe--------------eEEEeeccC
Confidence            9899999999976 6899888765  67777654 5699999999999999875221              12333432 


Q ss_pred             -ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCC
Q 004255          255 -RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS  333 (765)
Q Consensus       255 -r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~  333 (765)
                       .++.+..++                                                                      
T Consensus       105 gn~~l~~tD~----------------------------------------------------------------------  114 (327)
T KOG0643|consen  105 GNLILASTDK----------------------------------------------------------------------  114 (327)
T ss_pred             CcEEEEEehh----------------------------------------------------------------------
Confidence             333332221                                                                      


Q ss_pred             ccccccccccccCCCCeEEEEECC-------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC
Q 004255          334 VWKVGRHAGADMDNAGIVVVKDFV-------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS  406 (765)
Q Consensus       334 ~~~~~~~~~~~~~~dG~V~IwDl~-------s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~  406 (765)
                                ..++.+.|.++|++       +.++...+..+.+.|+.+-|+|-|..|++|-++|. |++||++.     
T Consensus       115 ----------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~-is~~da~~-----  178 (327)
T KOG0643|consen  115 ----------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS-ISIYDART-----  178 (327)
T ss_pred             ----------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-EEEEEccc-----
Confidence                      11244567777776       45678888899999999999999999999999876 99999976     


Q ss_pred             CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccc
Q 004255          407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ  470 (765)
Q Consensus       407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~  470 (765)
                        |          ..+.+-.+ .+...|.+|.||+|..+++++|.|.|.++||+.+.....++.
T Consensus       179 --g----------~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  179 --G----------KELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             --C----------ceeeechh-hhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence              3          23333222 234579999999999999999999999999998865544433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.7e-13  Score=148.85  Aligned_cols=249  Identities=15%  Similarity=0.235  Sum_probs=164.7

Q ss_pred             CCCcEEEEEEeeccCCC---CCCCe-EEEEEecCc-EEEEEccCCCcceEee---eeccCCEEEEEEecCCCCCCCCCCc
Q 004255           55 LKDQVTWAGFDRLEYGP---SVFKQ-VLLLGYQNG-FQVLDVEDASNFNELV---SKRDGPVSFLQMQPFPVKDDGCEGF  126 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~---~~~~~-vL~~G~~~G-~qVWdv~~~g~~~ell---s~~dg~V~~v~~lP~p~~~~~~d~f  126 (765)
                      -+..|+-+.|.++++.-   ...++ +++++...- +.+||++. .++.++-   ...+..++.-+++|+          
T Consensus       246 ~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~-ak~~k~~~~~g~e~~~~e~FeVShd----------  314 (514)
T KOG2055|consen  246 VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET-AKVTKLKPPYGVEEKSMERFEVSHD----------  314 (514)
T ss_pred             cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc-cccccccCCCCcccchhheeEecCC----------
Confidence            34466667776654431   11233 666666655 79999964 4444331   111223445555543          


Q ss_pred             cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---C
Q 004255          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---R  203 (765)
Q Consensus       127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~  203 (765)
                         .++||+.+.                                 -+-|.|-..+|++.+.+++..+.|.++.|+.   .
T Consensus       315 ---~~fia~~G~---------------------------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~  358 (514)
T KOG2055|consen  315 ---SNFIAIAGN---------------------------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKE  358 (514)
T ss_pred             ---CCeEEEccc---------------------------------CceEEeehhhhhhhhheeeeccEEeeEEEecCCcE
Confidence               247766321                                 1579999999999999999999999999875   5


Q ss_pred             eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCC
Q 004255          204 IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       204 ~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                      +++++.+++|++||+.+..++++....-.            +....++++.  +|||.+++                   
T Consensus       359 l~~~~~~GeV~v~nl~~~~~~~rf~D~G~------------v~gts~~~S~ng~ylA~GS~-------------------  407 (514)
T KOG2055|consen  359 LLASGGTGEVYVWNLRQNSCLHRFVDDGS------------VHGTSLCISLNGSYLATGSD-------------------  407 (514)
T ss_pred             EEEEcCCceEEEEecCCcceEEEEeecCc------------cceeeeeecCCCceEEeccC-------------------
Confidence            67777788999999999988888764221            0112344333  56666553                   


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC----
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV----  357 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~----  357 (765)
                                                                                        .|.|.|||..    
T Consensus       408 ------------------------------------------------------------------~GiVNIYd~~s~~~  421 (514)
T KOG2055|consen  408 ------------------------------------------------------------------SGIVNIYDGNSCFA  421 (514)
T ss_pred             ------------------------------------------------------------------cceEEEeccchhhc
Confidence                                                                              3455555533    


Q ss_pred             --CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE
Q 004255          358 --TRAIISQFKAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI  434 (765)
Q Consensus       358 --s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d-Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I  434 (765)
                        +.+++..+..-+..|+.|+|+||+++||.||.. ...+|+--+ |.      .+...+|...         +..-..|
T Consensus       422 s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-PS------~TVFsNfP~~---------n~~vg~v  485 (514)
T KOG2055|consen  422 STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-PS------CTVFSNFPTS---------NTKVGHV  485 (514)
T ss_pred             cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-cc------eeeeccCCCC---------CCcccce
Confidence              245677777778899999999999999999862 234777666 21      2222223221         1122358


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          435 QDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       435 ~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      +|++|||.|.+||.|..+|.++||.|..|
T Consensus       486 tc~aFSP~sG~lAvGNe~grv~l~kL~hy  514 (514)
T KOG2055|consen  486 TCMAFSPNSGYLAVGNEAGRVHLFKLHHY  514 (514)
T ss_pred             EEEEecCCCceEEeecCCCceeeEeeccC
Confidence            99999999999999999999999999754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.2e-12  Score=137.02  Aligned_cols=261  Identities=20%  Similarity=0.168  Sum_probs=151.8

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeecc----CCEEEEEEecCCCCCCCCCCcc
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRD----GPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~d----g~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      -+|++.|..+.|-.       +++.|++...++ |+||++.+-. .++--+.|.    +--..|.|.|+.          
T Consensus        83 KgH~~~vt~~~FsS-------dGK~lat~~~Dr~Ir~w~~~DF~-~~eHr~~R~nve~dhpT~V~FapDc----------  144 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSS-------DGKKLATISGDRSIRLWDVRDFE-NKEHRCIRQNVEYDHPTRVVFAPDC----------  144 (420)
T ss_pred             hccCCceeeeEEcC-------CCceeEEEeCCceEEEEecchhh-hhhhhHhhccccCCCceEEEECCCc----------
Confidence            35677788887743       477888888886 9999996521 111111110    122344555542          


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC---CeEEE------EEeCCC----C
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS---HCYEH------VLRFRS----S  194 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt---g~~v~------tL~~~s----~  194 (765)
                        +-+++. +.                                ...++++|-+..   |..-+      .+.|+.    .
T Consensus       145 --~s~vv~-~~--------------------------------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~  189 (420)
T KOG2096|consen  145 --KSVVVS-VK--------------------------------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVD  189 (420)
T ss_pred             --ceEEEE-Ec--------------------------------cCCEEEEEEeeecccCCCCcccccccccccchhcccc
Confidence              112221 11                                124788886643   22221      122331    3


Q ss_pred             EEE--EEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCC
Q 004255          195 VCM--VRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNS  269 (765)
Q Consensus       195 V~s--V~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~  269 (765)
                      |.+  ++-+.++|+.+. +..|.|||+. |+++.++.+....             ..-.|+||  |+||.++-.+-    
T Consensus       190 ~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~-------------n~~aavSP~GRFia~~gFTpD----  251 (420)
T KOG2096|consen  190 IINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS-------------NYDAAVSPDGRFIAVSGFTPD----  251 (420)
T ss_pred             eEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc-------------ccceeeCCCCcEEEEecCCCC----
Confidence            433  344557888765 5579999998 9999999875541             23478888  89988864310    


Q ss_pred             ccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCC
Q 004255          270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG  349 (765)
Q Consensus       270 G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG  349 (765)
                       ...|+.                                                                   --..||
T Consensus       252 -VkVwE~-------------------------------------------------------------------~f~kdG  263 (420)
T KOG2096|consen  252 -VKVWEP-------------------------------------------------------------------IFTKDG  263 (420)
T ss_pred             -ceEEEE-------------------------------------------------------------------EeccCc
Confidence             000000                                                                   001233


Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC--------C------CCC-----
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS--------G------SGN-----  410 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~--------~------sG~-----  410 (765)
                      +++     .-..+.+|++|.+.|.++|||++.+.++|+|.||+ +||||+.-.+...        +      .|.     
T Consensus       264 ~fq-----ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL  337 (420)
T KOG2096|consen  264 TFQ-----EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRL  337 (420)
T ss_pred             chh-----hhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceEE
Confidence            321     22345678999999999999999999999999886 9999985321100        0      000     


Q ss_pred             ---Cc----cccCCcceEEEEEeccc--------ccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255          411 ---HK----YDWNSSHVHLYKLHRGI--------TSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       411 ---~~----~~~~~s~~~l~~l~rG~--------~~a~I~slaFSpDg~~Las~S~dgTVhIwd  459 (765)
                         ..    .....+..+++.-++|.        +...|.+|+|++||+++|+++++ .++|+.
T Consensus       338 ~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv~~  400 (420)
T KOG2096|consen  338 ELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRVIR  400 (420)
T ss_pred             EeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeeeec
Confidence               00    00011123444434442        23359999999999999998754 577765

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.54  E-value=5.1e-13  Score=144.27  Aligned_cols=226  Identities=15%  Similarity=0.197  Sum_probs=160.0

Q ss_pred             eEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255           76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (765)
Q Consensus        76 ~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~  154 (765)
                      ..+++|..+ ..-++|. +.+....++.+|.-.|..+.+.|+               +.++...                
T Consensus       232 ~~ilTGG~d~~av~~d~-~s~q~l~~~~Gh~kki~~v~~~~~---------------~~~v~~a----------------  279 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDK-PSNQILATLKGHTKKITSVKFHKD---------------LDTVITA----------------  279 (506)
T ss_pred             CcceecCCCCceEEEec-chhhhhhhccCcceEEEEEEeccc---------------hhheeec----------------
Confidence            456666666 7999998 457788899999989999988764               1122111                


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEec
Q 004255          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTY  230 (765)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~  230 (765)
                                     ..+..|++|+.-...+...++. ..+|..+...+  .+|+.+. ++.+.+.|..++.++......
T Consensus       280 ---------------Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~  344 (506)
T KOG0289|consen  280 ---------------SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE  344 (506)
T ss_pred             ---------------CCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence                           0235899999987776666654 46898888766  6666655 556777889998766554321


Q ss_pred             CCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccc
Q 004255          231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS  310 (765)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~  310 (765)
                      .+           .+.+.+.+|.|.-|-                                                    
T Consensus       345 ~s-----------~v~~ts~~fHpDgLi----------------------------------------------------  361 (506)
T KOG0289|consen  345 TS-----------DVEYTSAAFHPDGLI----------------------------------------------------  361 (506)
T ss_pred             cc-----------cceeEEeeEcCCceE----------------------------------------------------
Confidence            11           112333333321111                                                    


Q ss_pred             eeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 004255          311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY  390 (765)
Q Consensus       311 ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d  390 (765)
                                                     .+.+..||.|+|||+.++..+..|.+|+++|.+++|+.+|-+|||+.+|
T Consensus       362 -------------------------------fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add  410 (506)
T KOG0289|consen  362 -------------------------------FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD  410 (506)
T ss_pred             -------------------------------EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC
Confidence                                           1234568999999999999999999999999999999999999999997


Q ss_pred             CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      |. |++||++...     .          -+.+.+.   ....|.+++|.+.|++|++++.|=+|++++-.
T Consensus       411 ~~-V~lwDLRKl~-----n----------~kt~~l~---~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~  462 (506)
T KOG0289|consen  411 GS-VKLWDLRKLK-----N----------FKTIQLD---EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK  462 (506)
T ss_pred             Ce-EEEEEehhhc-----c----------cceeecc---ccccceeEEEcCCCCeEEeecceeEEEEEecc
Confidence            75 9999996420     0          1222332   12258899999999999999988888888743

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=3e-13  Score=137.89  Aligned_cols=250  Identities=13%  Similarity=0.109  Sum_probs=168.6

Q ss_pred             CCCCCCcEEEEEEeeccC------CCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCC
Q 004255           52 SEDLKDQVTWAGFDRLEY------GPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEG  125 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~------~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~  125 (765)
                      ..+.+.-.....||.-+.      ..+...++++...++.+||||+.........+..|...|..+.+.+.         
T Consensus        45 ~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~---------  115 (311)
T KOG0277|consen   45 VTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV---------  115 (311)
T ss_pred             cCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc---------
Confidence            335666677778875221      12222444444445559999997777777788888888999887752         


Q ss_pred             ccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--
Q 004255          126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--  202 (765)
Q Consensus       126 f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--  202 (765)
                         .|..+++ +                      +|          ++||+|||...++-+++++.+ +.|+...++|  
T Consensus       116 ---~r~~~lt-s----------------------SW----------D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen  116 ---RRRIFLT-S----------------------SW----------DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI  159 (311)
T ss_pred             ---cceeEEe-e----------------------cc----------CCceEeecCCCCcceEeecCCccEEEEEecCCCC
Confidence               1223322 1                      34          379999999999999999875 5899999998  


Q ss_pred             -CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCC
Q 004255          203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (765)
Q Consensus       203 -~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~  280 (765)
                       ++++.+. ++..++||++..-....|..|...                 +++..|                        
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E-----------------il~cdw------------------------  198 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSE-----------------ILCCDW------------------------  198 (311)
T ss_pred             CCeEEEccCCceEEEEEecCCCceeEEEeccce-----------------eEeecc------------------------
Confidence             6777654 567999998754333334333220                 111111                        


Q ss_pred             CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (765)
Q Consensus       281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~  360 (765)
                                                       ++|-                     ...+++++.|+.|++||+++.+
T Consensus       199 ---------------------------------~ky~---------------------~~vl~Tg~vd~~vr~wDir~~r  224 (311)
T KOG0277|consen  199 ---------------------------------SKYN---------------------HNVLATGGVDNLVRGWDIRNLR  224 (311)
T ss_pred             ---------------------------------cccC---------------------CcEEEecCCCceEEEEehhhcc
Confidence                                             1110                     1123466789999999998854


Q ss_pred             -EEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 004255          361 -IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (765)
Q Consensus       361 -~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (765)
                       ++..|.+|.-.|..++|||. ..+|||||-| -++||||.+..     .+         ....++    +|..-+..+.
T Consensus       225 ~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD-mT~riw~~~~~-----ds---------~~e~~~----~HtEFv~g~D  285 (311)
T KOG0277|consen  225 TPLFELNGHGLAVRKVKFSPHHASLLASASYD-MTVRIWDPERQ-----DS---------AIETVD----HHTEFVCGLD  285 (311)
T ss_pred             ccceeecCCceEEEEEecCcchhhHhhhcccc-ceEEecccccc-----hh---------hhhhhh----ccceEEeccc
Confidence             68889999999999999995 6689999995 56999998631     01         012222    1223467788


Q ss_pred             Ecc-CCCEEEEEeCCCcEEEEeC
Q 004255          439 FSH-YSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       439 FSp-Dg~~Las~S~dgTVhIwdl  460 (765)
                      ||+ +..++|+++-|+++.||+-
T Consensus       286 ws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  286 WSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccccCceeeecccccceeeecc
Confidence            885 5689999999999999973

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.53  E-value=5.2e-13  Score=146.56  Aligned_cols=112  Identities=16%  Similarity=0.237  Sum_probs=84.2

Q ss_pred             cccCCCCeEEEEECCCCc-EEEEec-----cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccC
Q 004255          343 ADMDNAGIVVVKDFVTRA-IISQFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN  416 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~-~i~~~~-----aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~  416 (765)
                      .+++.||+++|||+...+ ....|+     +-.-+++.++|+|||+++|+|..||. |.+||....      .       
T Consensus       285 lT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~------~-------  350 (641)
T KOG0772|consen  285 LTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR------T-------  350 (641)
T ss_pred             EEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc------c-------
Confidence            467899999999997643 223332     33558899999999999999999876 999997321      1       


Q ss_pred             CcceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccc
Q 004255          417 SSHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ  470 (765)
Q Consensus       417 ~s~~~l~~l~rG~~~-a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~  470 (765)
                        .+..+..+..|.. ..|+||+||+||++|++-+.|++++||||..+..+...+
T Consensus       351 --v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  351 --VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             --cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence              1233444333332 269999999999999999999999999999987765433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.8e-12  Score=150.39  Aligned_cols=239  Identities=15%  Similarity=0.169  Sum_probs=164.0

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      ..|++..+=+.||.    +   +..|+++..+| +++|+.....+.-+++..+...|.+++.-             +.  
T Consensus        10 yaht~G~t~i~~d~----~---gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~-------------s~--   67 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP----D---GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY-------------SN--   67 (933)
T ss_pred             hhccCceEEEEEcC----C---CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec-------------cc--
Confidence            34566655555654    2   33555555555 99999965435566666666777777653             12  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE---EEEEeCCCCEEEEEecCCeEEEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLRFRSSVCMVRCSPRIVAVG  208 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~---v~tL~~~s~V~sV~~s~~~LaV~  208 (765)
                      .+++ +.                                .+++|.+|.+-.++.   +..+.++-.++++.-+++.+|.|
T Consensus        68 ~f~~-~s--------------------------------~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaag  114 (933)
T KOG1274|consen   68 HFLT-GS--------------------------------EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAG  114 (933)
T ss_pred             ceEE-ee--------------------------------ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEee
Confidence            3333 21                                236999999887764   44444544555555556788887


Q ss_pred             eCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255          209 LAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (765)
Q Consensus       209 ~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s  285 (765)
                      .++ .|+|-++.+....+.+++|..|             +..+.+.|  .+||.                          
T Consensus       115 sdD~~vK~~~~~D~s~~~~lrgh~ap-------------Vl~l~~~p~~~fLAv--------------------------  155 (933)
T KOG1274|consen  115 SDDTAVKLLNLDDSSQEKVLRGHDAP-------------VLQLSYDPKGNFLAV--------------------------  155 (933)
T ss_pred             cCceeEEEEeccccchheeecccCCc-------------eeeeeEcCCCCEEEE--------------------------
Confidence            766 5999999998888888887764             12234433  22222                          


Q ss_pred             cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (765)
Q Consensus       286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~  365 (765)
                                                                                 ...||.|+|||+.++.+..++
T Consensus       156 -----------------------------------------------------------ss~dG~v~iw~~~~~~~~~tl  176 (933)
T KOG1274|consen  156 -----------------------------------------------------------SSCDGKVQIWDLQDGILSKTL  176 (933)
T ss_pred             -----------------------------------------------------------EecCceEEEEEcccchhhhhc
Confidence                                                                       245889999999988776665


Q ss_pred             cc-------C-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 004255          366 KA-------H-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI  437 (765)
Q Consensus       366 ~a-------H-~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sl  437 (765)
                      .+       - ...+..++|+|+|..||..+.|+ .|++|+...       .          .++++|+-......+.++
T Consensus       177 ~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkvy~r~~-------w----------e~~f~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  177 TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKVYSRKG-------W----------ELQFKLRDKLSSSKFSDL  238 (933)
T ss_pred             ccCCccccccccceeeeeeecCCCCeEEeeccCC-eEEEEccCC-------c----------eeheeecccccccceEEE
Confidence            43       1 45677899999966666666645 599999753       2          477888644444469999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          438 CFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       438 aFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      +|||.|+|||+++.||-|-|||+++
T Consensus       239 ~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  239 QWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEcCCCcEEeeeccCCcEEEEeccc
Confidence            9999999999999999999999984

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=6.4e-12  Score=126.19  Aligned_cols=254  Identities=14%  Similarity=0.119  Sum_probs=172.9

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcc-----eEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-----NELVSKRDGPVSFLQMQPFPVKDDGCEGF  126 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~-----~ells~~dg~V~~v~~lP~p~~~~~~d~f  126 (765)
                      --+|..|.+..|-.|       +.+|++|.++- |++.-.+. +.+     .--++-|||.|+.++|+-+|..       
T Consensus        86 khhkgsiyc~~ws~~-------geliatgsndk~ik~l~fn~-dt~~~~g~dle~nmhdgtirdl~fld~~~s-------  150 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPC-------GELIATGSNDKTIKVLPFNA-DTCNATGHDLEFNMHDGTIRDLAFLDDPES-------  150 (350)
T ss_pred             cccCccEEEEEecCc-------cCeEEecCCCceEEEEeccc-ccccccCcceeeeecCCceeeeEEecCCCc-------
Confidence            346677777777553       67999999875 78876632 222     2236789999999999977632       


Q ss_pred             cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEE-ecCCe
Q 004255          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVR-CSPRI  204 (765)
Q Consensus       127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~-~s~~~  204 (765)
                        ..-+|+.  ++    .                          -+++|.+=|-.+|+..+.+..+ +.|+++- +|.-.
T Consensus       151 --~~~il~s--~g----a--------------------------gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m  196 (350)
T KOG0641|consen  151 --GGAILAS--AG----A--------------------------GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAM  196 (350)
T ss_pred             --CceEEEe--cC----C--------------------------CcceEEEeecCCCCcceeecCCcccEEEEEEecCcE
Confidence              2235544  21    0                          1368888899999999999876 5788875 67777


Q ss_pred             EEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccc-cccceeEEccceEEEecCCceecCCccccCCCCCCCCC
Q 004255          205 VAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN-VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (765)
Q Consensus       205 LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~-~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~  282 (765)
                      ++.|.. .+|++||++-..+..++...-.-      . +.. ..+..+++.|                            
T Consensus       197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~------~-glessavaav~vdp----------------------------  241 (350)
T KOG0641|consen  197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHD------G-GLESSAVAAVAVDP----------------------------  241 (350)
T ss_pred             EEccCCCceEEEEeeeccceeeeccCcccC------C-CcccceeEEEEECC----------------------------
Confidence            777664 56999998876666665431110      0 000 0001111111                            


Q ss_pred             CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i  362 (765)
                                                                         .++    .++++..|....+||++.++.+
T Consensus       242 ---------------------------------------------------sgr----ll~sg~~dssc~lydirg~r~i  266 (350)
T KOG0641|consen  242 ---------------------------------------------------SGR----LLASGHADSSCMLYDIRGGRMI  266 (350)
T ss_pred             ---------------------------------------------------Ccc----eeeeccCCCceEEEEeeCCcee
Confidence                                                               011    0224556778899999999999


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (765)
Q Consensus       363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (765)
                      ..|..|+..|.|+.|||...+|+|+|- +..|+|=|++-.            +.   +.|-.+--+.+...+..+.|.|.
T Consensus       267 q~f~phsadir~vrfsp~a~yllt~sy-d~~ikltdlqgd------------la---~el~~~vv~ehkdk~i~~rwh~~  330 (350)
T KOG0641|consen  267 QRFHPHSADIRCVRFSPGAHYLLTCSY-DMKIKLTDLQGD------------LA---HELPIMVVAEHKDKAIQCRWHPQ  330 (350)
T ss_pred             eeeCCCccceeEEEeCCCceEEEEecc-cceEEEeecccc------------hh---hcCceEEEEeccCceEEEEecCc
Confidence            999999999999999999999999999 456999998521            00   11111112334455666899999


Q ss_pred             CCEEEEEeCCCcEEEEeCC
Q 004255          443 SQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       443 g~~Las~S~dgTVhIwdl~  461 (765)
                      .--+.++|.|.|+.+|.++
T Consensus       331 d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  331 DFSFISSSADKTATLWALN  349 (350)
T ss_pred             cceeeeccCcceEEEeccC
Confidence            8888999999999999876

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.53  E-value=5.1e-12  Score=145.32  Aligned_cols=120  Identities=19%  Similarity=0.261  Sum_probs=87.0

Q ss_pred             cCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc----CCCCCCcc----
Q 004255          345 MDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR----SGSGNHKY----  413 (765)
Q Consensus       345 ~~~dG~V~IwDl~s~~~i~~~---~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~----~~sG~~~~----  413 (765)
                      |...|+|-+|++++|-....|   ++|..+|..|+.+--+++++||+.+|. ++.||.......    -+.+.+..    
T Consensus       466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr  544 (910)
T KOG1539|consen  466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHR  544 (910)
T ss_pred             eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeeee
Confidence            456799999999999998999   699999999999999999999999774 999998652100    00000000    


Q ss_pred             --c-----cCCcceEEEEE--------ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          414 --D-----WNSSHVHLYKL--------HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       414 --~-----~~~s~~~l~~l--------~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                        +     .+.-...++..        .+|+ ...|++++|||||+||++++.|+||++||+.+....
T Consensus       545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             hhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence              0     00000112211        2454 357999999999999999999999999999875443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.51  E-value=1.1e-12  Score=151.53  Aligned_cols=193  Identities=19%  Similarity=0.177  Sum_probs=126.6

Q ss_pred             CCCCcccCCcCCCCCCC---CCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEE-EeCCeEEEEECCCCcee
Q 004255          152 HLGGVRDGMMDSQSGNC---VNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENK  224 (765)
Q Consensus       152 ~~~~~r~g~~~~~~~~~---~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV-~~~~~I~iwD~~t~~~l  224 (765)
                      |.+.+=|=+|..  .++   ..+++|||||++...+|++.+.+++-|.+|+|+|   ++++. ++|++|+||++..-+. 
T Consensus       368 Ht~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V-  444 (712)
T KOG0283|consen  368 HTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV-  444 (712)
T ss_pred             cchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCee-
Confidence            444555556642  112   2478999999999999999999999999999999   56665 5788999999876542 


Q ss_pred             EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhh
Q 004255          225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ  304 (765)
Q Consensus       225 ~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~  304 (765)
                        .......+.           ...+       +|..                           +               
T Consensus       445 --v~W~Dl~~l-----------ITAv-------cy~P---------------------------d---------------  462 (712)
T KOG0283|consen  445 --VDWNDLRDL-----------ITAV-------CYSP---------------------------D---------------  462 (712)
T ss_pred             --Eeehhhhhh-----------heeE-------Eecc---------------------------C---------------
Confidence              111111100           0111       1111                           1               


Q ss_pred             hhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec---------cCCCCeEEE
Q 004255          305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK---------AHTSPISAL  375 (765)
Q Consensus       305 la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~---------aH~~~IsaL  375 (765)
                                                    ++.    ..-|..+|.+++|+....+.+..+.         .|. .|+.+
T Consensus       463 ------------------------------Gk~----avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~  507 (712)
T KOG0283|consen  463 ------------------------------GKG----AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGL  507 (712)
T ss_pred             ------------------------------Cce----EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeee
Confidence                                          000    1134567888888887776655443         133 79999


Q ss_pred             EECCCCC--EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEEEEeCC
Q 004255          376 CFDPSGT--LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSK  452 (765)
Q Consensus       376 aFSpdG~--lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~~Las~S~d  452 (765)
                      .|.|...  +|+| |. |..|||||....                 ..+.+|+ |..+. .-...+|+.||++|+++|+|
T Consensus       508 Q~~p~~~~~vLVT-Sn-DSrIRI~d~~~~-----------------~lv~KfK-G~~n~~SQ~~Asfs~Dgk~IVs~seD  567 (712)
T KOG0283|consen  508 QFFPGDPDEVLVT-SN-DSRIRIYDGRDK-----------------DLVHKFK-GFRNTSSQISASFSSDGKHIVSASED  567 (712)
T ss_pred             EecCCCCCeEEEe-cC-CCceEEEeccch-----------------hhhhhhc-ccccCCcceeeeEccCCCEEEEeecC
Confidence            9997543  5655 55 345999998541                 2334443 43332 33568999999999999999


Q ss_pred             CcEEEEeCCCCC
Q 004255          453 GTCHVFVLSPFG  464 (765)
Q Consensus       453 gTVhIwdl~~~g  464 (765)
                      .-|+||++....
T Consensus       568 s~VYiW~~~~~~  579 (712)
T KOG0283|consen  568 SWVYIWKNDSFN  579 (712)
T ss_pred             ceEEEEeCCCCc
Confidence            999999986654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.51  E-value=2.8e-12  Score=131.34  Aligned_cols=229  Identities=15%  Similarity=0.214  Sum_probs=164.6

Q ss_pred             eeccCCCCCCCeEEEEEec-CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCC
Q 004255           65 DRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNT  143 (765)
Q Consensus        65 d~l~~~~~~~~~vL~~G~~-~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~  143 (765)
                      |||.+.+.. ...|++.+. ..+++||+- .+++...+....+.+ .+.+.|..             ..+++..      
T Consensus        68 dql~w~~~~-~d~~atas~dk~ir~wd~r-~~k~~~~i~~~~eni-~i~wsp~g-------------~~~~~~~------  125 (313)
T KOG1407|consen   68 DQLCWDPKH-PDLFATASGDKTIRIWDIR-SGKCTARIETKGENI-NITWSPDG-------------EYIAVGN------  125 (313)
T ss_pred             hhheeCCCC-CcceEEecCCceEEEEEec-cCcEEEEeeccCcce-EEEEcCCC-------------CEEEEec------
Confidence            444444333 345555554 469999994 566665555555544 44567642             2555421      


Q ss_pred             CCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeE-EEEeCCeEEEEECCC
Q 004255          144 LAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVGLATQIYCFDALT  220 (765)
Q Consensus       144 ~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~L-aV~~~~~I~iwD~~t  220 (765)
                                                 .+..|.+.|.++.+.+++.+|.-.+..+.++-  +++ +...-+.|.|..-..
T Consensus       126 ---------------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps  178 (313)
T KOG1407|consen  126 ---------------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS  178 (313)
T ss_pred             ---------------------------CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence                                       13479999999999999999988888777764  333 333336899988888


Q ss_pred             CceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeeh
Q 004255          221 LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA  298 (765)
Q Consensus       221 ~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a  298 (765)
                      ++.+++|..||..             --.+.|+|  ||+|.++                                     
T Consensus       179 Lkpv~si~AH~sn-------------CicI~f~p~GryfA~Gs-------------------------------------  208 (313)
T KOG1407|consen  179 LKPVQSIKAHPSN-------------CICIEFDPDGRYFATGS-------------------------------------  208 (313)
T ss_pred             cccccccccCCcc-------------eEEEEECCCCceEeecc-------------------------------------
Confidence            9999999988862             13456666  6666654                                     


Q ss_pred             hhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEC
Q 004255          299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFD  378 (765)
Q Consensus       299 ~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFS  378 (765)
                                                                      .|-.|-+||+...-++..|.-|.-||..|+||
T Consensus       209 ------------------------------------------------ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS  240 (313)
T KOG1407|consen  209 ------------------------------------------------ADALVSLWDVDELICERCISRLDWPVRTLSFS  240 (313)
T ss_pred             ------------------------------------------------ccceeeccChhHhhhheeeccccCceEEEEec
Confidence                                                            24467799999999999999999999999999


Q ss_pred             CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC------
Q 004255          379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK------  452 (765)
Q Consensus       379 pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d------  452 (765)
                      .||++||+||+ ++.|-|=++.+       |          .++++..   ..+.-..++|+|....||-+.+|      
T Consensus       241 ~dg~~lASaSE-Dh~IDIA~vet-------G----------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~  299 (313)
T KOG1407|consen  241 HDGRMLASASE-DHFIDIAEVET-------G----------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSN  299 (313)
T ss_pred             cCcceeeccCc-cceEEeEeccc-------C----------CeEEEee---ccCCceeEEecCCCceeeEEecCCCCccc
Confidence            99999999999 67787777765       5          4777775   34567889999999999988765      


Q ss_pred             ---CcEEEEeCC
Q 004255          453 ---GTCHVFVLS  461 (765)
Q Consensus       453 ---gTVhIwdl~  461 (765)
                         |+++||-+.
T Consensus       300 reag~vKiFG~~  311 (313)
T KOG1407|consen  300 REAGTVKIFGLS  311 (313)
T ss_pred             cccceeEEecCC
Confidence               466666543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.51  E-value=3.6e-13  Score=146.35  Aligned_cols=106  Identities=18%  Similarity=0.297  Sum_probs=88.5

Q ss_pred             ccCCCCeEEEEECC--CCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255          344 DMDNAGIVVVKDFV--TRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (765)
Q Consensus       344 ~~~~dG~V~IwDl~--s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~  420 (765)
                      +.+.|+.+.|||++  +.++....++|+.+|+|++|+| ++.+|||||.|++ |+|||++..      .          .
T Consensus       245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL------~----------~  307 (422)
T KOG0264|consen  245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL------N----------K  307 (422)
T ss_pred             eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc------c----------c
Confidence            45789999999999  5667777899999999999999 6788999999665 999999652      1          4


Q ss_pred             EEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCcc
Q 004255          421 HLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSG  468 (765)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg~~~  468 (765)
                      +++.+. | +...|..|.|||+- ..||+++.|+.++|||+...|.+..
T Consensus       308 ~lh~~e-~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~  354 (422)
T KOG0264|consen  308 PLHTFE-G-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS  354 (422)
T ss_pred             Cceecc-C-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence            677775 3 34679999999986 6789999999999999999887753

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.51  E-value=5.2e-12  Score=145.23  Aligned_cols=96  Identities=22%  Similarity=0.335  Sum_probs=80.8

Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      .+..|-.|+|+|..+.+++..|.+|...|++++|||||++|++|+.|++ ||+||+-+       |          .++-
T Consensus       551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt-------~----------~lID  612 (910)
T KOG1539|consen  551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPT-------G----------TLID  612 (910)
T ss_pred             hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccC-------c----------ceee
Confidence            4456778999999999999999999999999999999999999999765 99999955       3          2333


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCC-CcEEEEeC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVL  460 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~d-gTVhIwdl  460 (765)
                      -+.   ...+..+++|||+|.+||++..| .-|.+|.=
T Consensus       613 ~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  613 GLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             eEe---cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            332   23468899999999999999998 56999964

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.50  E-value=5.4e-13  Score=150.39  Aligned_cols=218  Identities=17%  Similarity=0.239  Sum_probs=145.5

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CCEEEEEecC-----CeEEEEeCCe-EEEEECC-CCceeEEEEecCCcccCCCCccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-----RIVAVGLATQ-IYCFDAL-TLENKFSVLTYPVPQLAGQGAVGIN  244 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-----~~LaV~~~~~-I~iwD~~-t~~~l~tl~t~p~p~~~~~~~~~~~  244 (765)
                      +++++|||..-++.+.++-| +.|+++.++.     ++||.+..++ ||+||+. +..++++|.+|...           
T Consensus       481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss-----------  549 (1080)
T KOG1408|consen  481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS-----------  549 (1080)
T ss_pred             CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc-----------
Confidence            68999999999998888854 7999999875     6888877654 9999975 56677788777652           


Q ss_pred             cccceeEE--cc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccc
Q 004255          245 VGYGPMAV--GP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE  319 (765)
Q Consensus       245 ~~~~~~Al--sp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~  319 (765)
                        ...+-|  ..   +.|.++.+..+.-..    -|..           +.|.           ....+. +++++.+  
T Consensus       550 --ITsvKFa~~gln~~MiscGADksimFr~----~qk~-----------~~g~-----------~f~r~t-~t~~ktT--  598 (1080)
T KOG1408|consen  550 --ITSVKFACNGLNRKMISCGADKSIMFRV----NQKA-----------SSGR-----------LFPRHT-QTLSKTT--  598 (1080)
T ss_pred             --eeEEEEeecCCceEEEeccCchhhheeh----hccc-----------cCce-----------eccccc-cccccce--
Confidence              122222  11   334333332211000    0000           0000           000000 1222111  


Q ss_pred             cCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc---CCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 004255          320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINI  396 (765)
Q Consensus       320 ~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a---H~~~IsaLaFSpdG~lLATaS~dGt~IrV  396 (765)
                       +.     .....|.|+.    .+.+.+|..|+|||+.+++..+.|++   |.+..-.+..+|+|-||||... ++++.+
T Consensus       599 -lY-----Dm~Vdp~~k~----v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dktl~~  667 (1080)
T KOG1408|consen  599 -LY-----DMAVDPTSKL----VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DKTLCF  667 (1080)
T ss_pred             -EE-----EeeeCCCcce----EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-CCceEE
Confidence             00     1111223332    34678999999999999999999985   6778889999999999999988 556999


Q ss_pred             EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       397 Wdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      ||.-.       |          .++.++. |+ ...|+.+.|++|.+.|.+.+.||-|.||.+..
T Consensus       668 ~Df~s-------g----------EcvA~m~-GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  668 VDFVS-------G----------ECVAQMT-GH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEecc-------c----------hhhhhhc-Cc-chheeeeeecccchhheeecCCceEEEEECch
Confidence            99854       4          4666654 53 34699999999999999999999999999875

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.49  E-value=8e-14  Score=152.21  Aligned_cols=207  Identities=14%  Similarity=0.125  Sum_probs=157.0

Q ss_pred             cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 004255           96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV  175 (765)
Q Consensus        96 ~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV  175 (765)
                      ....++++|...|.++++.|.            +..||+.  ++                               .+++|
T Consensus       205 k~~~~~~gH~kgvsai~~fp~------------~~hLlLS--~g-------------------------------mD~~v  239 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPK------------KGHLLLS--GG-------------------------------MDGLV  239 (503)
T ss_pred             hheeeccCCccccchhhhccc------------eeeEEEe--cC-------------------------------CCceE
Confidence            355677888899999999873            3346654  21                               35799


Q ss_pred             EEEECCC-CeEEEEEeCCC-CEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 004255          176 RFYSFQS-HCYEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (765)
Q Consensus       176 ~lWdlkt-g~~v~tL~~~s-~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~  250 (765)
                      +||++.. +.+++++.+|+ +|.++++|.   ++|.++++..|++||++||+++.++.+.-.|              ..+
T Consensus       240 klW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~--------------~cv  305 (503)
T KOG0282|consen  240 KLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP--------------TCV  305 (503)
T ss_pred             EEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCc--------------eee
Confidence            9999986 89999998775 899999987   6888999999999999999998887643221              111


Q ss_pred             EEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCcc
Q 004255          251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS  330 (765)
Q Consensus       251 Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s  330 (765)
                      .+.|                                  ++-                                       
T Consensus       306 kf~p----------------------------------d~~---------------------------------------  312 (503)
T KOG0282|consen  306 KFHP----------------------------------DNQ---------------------------------------  312 (503)
T ss_pred             ecCC----------------------------------CCC---------------------------------------
Confidence            1111                                  100                                       


Q ss_pred             CCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 004255          331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN  410 (765)
Q Consensus       331 ~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~  410 (765)
                               .....|..|+.|+.||++++++++.+..|-+.|..+.|=++|+.++|+|+|+ .+|||+....       .
T Consensus       313 ---------n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-s~riWe~~~~-------v  375 (503)
T KOG0282|consen  313 ---------NIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-SVRIWENRIP-------V  375 (503)
T ss_pred             ---------cEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc-cEEEEEcCCC-------c
Confidence                     0012356789999999999999999999999999999999999999999965 5999998541       0


Q ss_pred             CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                               ...+...-.++  ...+|..+|.+.|+++=|.|+.|-||.+.+
T Consensus       376 ---------~ik~i~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~  416 (503)
T KOG0282|consen  376 ---------PIKNIADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVP  416 (503)
T ss_pred             ---------cchhhcchhhc--cCcceecCCCCCeehhhccCceEEEEeccc
Confidence                     11122222222  367899999999999999999999999765

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.49  E-value=2.9e-13  Score=154.33  Aligned_cols=113  Identities=16%  Similarity=0.255  Sum_probs=85.9

Q ss_pred             ccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          344 DMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      ++...|.+++||++.. ++..+|.||.+||.|+.|+|++.+||||+.| +.|+|||....               ....+
T Consensus       194 s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-K~vkiWd~t~~---------------~~~~~  257 (839)
T KOG0269|consen  194 SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-KMVKIWDMTDS---------------RAKPK  257 (839)
T ss_pred             EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC-ccEEEEeccCC---------------Cccce
Confidence            3456799999999864 5778899999999999999999999999985 56999998531               01233


Q ss_pred             EEEecccccccEEEEEEccCCCE-EEEEeC--CCcEEEEeCCC-CCCCcccccccCC
Q 004255          423 YKLHRGITSATIQDICFSHYSQW-IAIVSS--KGTCHVFVLSP-FGGDSGFQTLSSQ  475 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~-Las~S~--dgTVhIwdl~~-~gg~~~~~~h~~~  475 (765)
                      ....   +.++|..+.|-|+-++ ||+++.  |-.||||||.. |=-...+..|...
T Consensus       258 ~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~  311 (839)
T KOG0269|consen  258 HTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS  311 (839)
T ss_pred             eEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcc
Confidence            4443   4578999999999865 666664  67799999964 4444567777643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.48  E-value=4.7e-12  Score=144.15  Aligned_cols=301  Identities=14%  Similarity=0.115  Sum_probs=201.6

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcce--------EeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFN--------ELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        56 ~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~--------ells~~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      +.+|.|+.+-.  .  +...+.|++=.++.+..|.++..+.-.        -.+.+|...|+.+.++-            
T Consensus       320 ~~kiks~dv~~--~--~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~------------  383 (888)
T KOG0306|consen  320 SAKIKSFDVTP--S--GGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS------------  383 (888)
T ss_pred             hhheeEEEEEe--c--CCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec------------
Confidence            45566644422  2  222356666557789999997633320        12335556788888773            


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeE
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV  205 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~L  205 (765)
                       +.-+|+  ++.                                .+.++||+.+++++++++... -+++..|-|  +.+
T Consensus       384 -d~~~~~--Sga--------------------------------~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~I  427 (888)
T KOG0306|consen  384 -DSILLA--SGA--------------------------------GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYI  427 (888)
T ss_pred             -Cceeee--ecC--------------------------------CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceE
Confidence             212333  221                                147999999999999999876 677777766  677


Q ss_pred             EEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCCccccCCCCCCC
Q 004255          206 AVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNSGRLSPQNLTPS  280 (765)
Q Consensus       206 aV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~--~~~~~G~~s~~~lt~~  280 (765)
                      ++|.. +.+.+||+....++.+++.|..             ..++++++|  +..+.++.+.  ..+...-+        
T Consensus       428 v~G~k~Gel~vfdlaS~~l~Eti~AHdg-------------aIWsi~~~pD~~g~vT~saDktVkfWdf~l~--------  486 (888)
T KOG0306|consen  428 VLGTKNGELQVFDLASASLVETIRAHDG-------------AIWSISLSPDNKGFVTGSADKTVKFWDFKLV--------  486 (888)
T ss_pred             EEeccCCceEEEEeehhhhhhhhhcccc-------------ceeeeeecCCCCceEEecCCcEEEEEeEEEE--------
Confidence            77776 4699999999888888877654             257888988  6666665442  22211100        


Q ss_pred             CCCCCcCCCCCcceeeehhhhhhhhhcccceeecc-cccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK-YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (765)
Q Consensus       281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~-~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~  359 (765)
                           ++ .+|+         .+       |.|+= +...+--.........+|+++..+.    +--|.+|+||-+.+.
T Consensus       487 -----~~-~~gt---------~~-------k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV----sLLdnTVkVyflDtl  540 (888)
T KOG0306|consen  487 -----VS-VPGT---------QK-------KVLSLKHTRTLELEDDVLCVSVSPDGKLLAV----SLLDNTVKVYFLDTL  540 (888)
T ss_pred             -----ec-cCcc---------cc-------eeeeeccceEEeccccEEEEEEcCCCcEEEE----EeccCeEEEEEecce
Confidence                 00 0000         00       00100 0000001122345566777776553    346789999999999


Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 004255          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF  439 (765)
Q Consensus       360 ~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF  439 (765)
                      +-.-.+-||.-||.||..|||+++++|||. |++|+||-+.-       |.          +-.-+. + |...|.++.|
T Consensus       541 KFflsLYGHkLPV~smDIS~DSklivTgSA-DKnVKiWGLdF-------GD----------CHKS~f-A-HdDSvm~V~F  600 (888)
T KOG0306|consen  541 KFFLSLYGHKLPVLSMDISPDSKLIVTGSA-DKNVKIWGLDF-------GD----------CHKSFF-A-HDDSVMSVQF  600 (888)
T ss_pred             eeeeeecccccceeEEeccCCcCeEEeccC-CCceEEecccc-------ch----------hhhhhh-c-ccCceeEEEE
Confidence            999999999999999999999999999999 56699998754       31          212222 2 3356999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCC
Q 004255          440 SHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ  475 (765)
Q Consensus       440 SpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~  475 (765)
                      -|+...+.+++.|+.|+-||-..+.....+.+|...
T Consensus       601 ~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e  636 (888)
T KOG0306|consen  601 LPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE  636 (888)
T ss_pred             cccceeEEEecCcceEEeechhhhhhheeeccchhe
Confidence            999999999999999999999999999999998654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.48  E-value=1.9e-12  Score=131.82  Aligned_cols=283  Identities=13%  Similarity=0.093  Sum_probs=181.3

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL  133 (765)
                      +++-.|.-..|-..  .  ..+-.|+.+..+|--+..-.++|...-++.+|.|.|....+..+-              +.
T Consensus        12 ghtrpvvdl~~s~i--t--p~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na--------------~~   73 (334)
T KOG0278|consen   12 GHTRPVVDLAFSPI--T--PDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNA--------------TR   73 (334)
T ss_pred             CCCcceeEEeccCC--C--CCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchh--------------hh
Confidence            34555555555432  1  246789999998854444456788999999999999988765331              22


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE-eC
Q 004255          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-LA  210 (765)
Q Consensus       134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~-~~  210 (765)
                      |. ++                               ..+-+-++||.-+|..++++.+..-|.+++|+.  +.|+.| .+
T Consensus        74 aa-sa-------------------------------aadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~e  121 (334)
T KOG0278|consen   74 AA-SA-------------------------------AADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQE  121 (334)
T ss_pred             hh-hh-------------------------------cccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchH
Confidence            21 10                               023477899999999999999999999999987  455554 44


Q ss_pred             CeEEEEECCCCce-eEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255          211 TQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (765)
Q Consensus       211 ~~I~iwD~~t~~~-l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp  288 (765)
                      .-++|||+...+. +..+.+|+..         +  ....+..+- ..|..+.+..      ++.||..+...+      
T Consensus       122 kllrvfdln~p~App~E~~ghtg~---------I--r~v~wc~eD~~iLSSadd~t------VRLWD~rTgt~v------  178 (334)
T KOG0278|consen  122 KLLRVFDLNRPKAPPKEISGHTGG---------I--RTVLWCHEDKCILSSADDKT------VRLWDHRTGTEV------  178 (334)
T ss_pred             HHhhhhhccCCCCCchhhcCCCCc---------c--eeEEEeccCceEEeeccCCc------eEEEEeccCcEE------
Confidence            4589999876542 2333344431         1  112222332 5566666542      234665543111      


Q ss_pred             CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH  368 (765)
Q Consensus       289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH  368 (765)
                                            ++|.      + ...+.+.-.+++++.     .+....+.|..||..+...++.++..
T Consensus       179 ----------------------~sL~------~-~s~VtSlEvs~dG~i-----lTia~gssV~Fwdaksf~~lKs~k~P  224 (334)
T KOG0278|consen  179 ----------------------QSLE------F-NSPVTSLEVSQDGRI-----LTIAYGSSVKFWDAKSFGLLKSYKMP  224 (334)
T ss_pred             ----------------------EEEe------c-CCCCcceeeccCCCE-----EEEecCceeEEeccccccceeeccCc
Confidence                                  0100      0 000011111122222     12345678999999999988887654


Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI  448 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las  448 (765)
                       ..|.+.+++|+-..++.++.|+. ++.||..+       |          ..+-.+..|+. .+|.|+.|||||..-|+
T Consensus       225 -~nV~SASL~P~k~~fVaGged~~-~~kfDy~T-------g----------eEi~~~nkgh~-gpVhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  225 -CNVESASLHPKKEFFVAGGEDFK-VYKFDYNT-------G----------EEIGSYNKGHF-GPVHCVRFSPDGELYAS  284 (334)
T ss_pred             -cccccccccCCCceEEecCcceE-EEEEeccC-------C----------ceeeecccCCC-CceEEEEECCCCceeec
Confidence             45889999999999999999765 88999866       3          23333335644 57999999999999999


Q ss_pred             EeCCCcEEEEeCCCC
Q 004255          449 VSSKGTCHVFVLSPF  463 (765)
Q Consensus       449 ~S~dgTVhIwdl~~~  463 (765)
                      ||.||||+||...+.
T Consensus       285 GSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  285 GSEDGTIRLWQTTPG  299 (334)
T ss_pred             cCCCceEEEEEecCC
Confidence            999999999998764

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=4.1e-12  Score=143.09  Aligned_cols=238  Identities=16%  Similarity=0.171  Sum_probs=179.4

Q ss_pred             CCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      ..++|++|....+.+|+- ..+.+.++.+.+...|..+.+.++             ...||+-.                
T Consensus       187 s~n~laValg~~vylW~~-~s~~v~~l~~~~~~~vtSv~ws~~-------------G~~LavG~----------------  236 (484)
T KOG0305|consen  187 SANVLAVALGQSVYLWSA-SSGSVTELCSFGEELVTSVKWSPD-------------GSHLAVGT----------------  236 (484)
T ss_pred             cCCeEEEEecceEEEEec-CCCceEEeEecCCCceEEEEECCC-------------CCEEEEee----------------
Confidence            467999999999999998 467788888887889999999864             23677622                


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCCEEEEEecCCeEEEEeC-CeEEEEECCCCceeEE-EEe
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPRIVAVGLA-TQIYCFDALTLENKFS-VLT  229 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~--~s~V~sV~~s~~~LaV~~~-~~I~iwD~~t~~~l~t-l~t  229 (765)
                                       ..++|.|||.++.+.+.++.+  ...|-+++.+...|.+|.. ..|..+|++..+.... +..
T Consensus       237 -----------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~  299 (484)
T KOG0305|consen  237 -----------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQG  299 (484)
T ss_pred             -----------------cCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence                             236899999999999999987  4689999999988888764 5799999887654333 222


Q ss_pred             cCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccc
Q 004255          230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL  309 (765)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~  309 (765)
                      |..-               .+.     |+...                                                
T Consensus       300 H~qe---------------VCg-----Lkws~------------------------------------------------  311 (484)
T KOG0305|consen  300 HRQE---------------VCG-----LKWSP------------------------------------------------  311 (484)
T ss_pred             ccce---------------eee-----eEECC------------------------------------------------
Confidence            2210               011     11111                                                


Q ss_pred             ceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEE
Q 004255          310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTAS  388 (765)
Q Consensus       310 ~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS  388 (765)
                                                  .+..+++++.|..+.|||......+..|..|+..|-+|+|+| ...+||||+
T Consensus       312 ----------------------------d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG  363 (484)
T KOG0305|consen  312 ----------------------------DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG  363 (484)
T ss_pred             ----------------------------CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence                                        111234567889999999988889999999999999999999 677999974


Q ss_pred             -cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE--eCCCcEEEEeCCCCCC
Q 004255          389 -VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV--SSKGTCHVFVLSPFGG  465 (765)
Q Consensus       389 -~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~--S~dgTVhIwdl~~~gg  465 (765)
                       ..|..|++||+.+       |          .++....   +...|.+|.||+..+-|+++  -.++-|.||+......
T Consensus       364 Gs~D~~i~fwn~~~-------g----------~~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~  423 (484)
T KOG0305|consen  364 GSADRCIKFWNTNT-------G----------ARIDSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL  423 (484)
T ss_pred             CCcccEEEEEEcCC-------C----------cEecccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence             3356799999865       4          3444443   34579999999999766655  3466899999999888


Q ss_pred             CcccccccC
Q 004255          466 DSGFQTLSS  474 (765)
Q Consensus       466 ~~~~~~h~~  474 (765)
                      ...+.+|+.
T Consensus       424 ~~~l~gH~~  432 (484)
T KOG0305|consen  424 VAELLGHTS  432 (484)
T ss_pred             eeeecCCcc
Confidence            888899974

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1e-13  Score=156.92  Aligned_cols=213  Identities=14%  Similarity=0.235  Sum_probs=157.4

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      .++++.|..+. +-+|.+.... ..--|-+|+++|.+|.+.+.           .  -||+.  +.              
T Consensus        40 ~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl~f~~~-----------E--~Llaa--gs--------------   89 (825)
T KOG0267|consen   40 SRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESLTFDTS-----------E--RLLAA--GS--------------   89 (825)
T ss_pred             ceeeccCCCceeeccccccCCc-hhheeeccCCcceeeecCcc-----------h--hhhcc--cc--------------
Confidence            47888887776 5699986533 33346689999999998742           1  25432  20              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                                       ..++|+|||+..++.+++|.++ ..+.+|.|+|  .+.|.+. +..+.+||.+..-|.++..+
T Consensus        90 -----------------asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s  152 (825)
T KOG0267|consen   90 -----------------ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS  152 (825)
T ss_pred             -----------------cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence                             1379999999999999999865 6999999999  4556554 45699999997778787776


Q ss_pred             cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255          230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (765)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~  307 (765)
                      |+-             ....++|+|  ||+|.+                                               
T Consensus       153 ~~~-------------vv~~l~lsP~Gr~v~~g-----------------------------------------------  172 (825)
T KOG0267|consen  153 HTR-------------VVDVLRLSPDGRWVASG-----------------------------------------------  172 (825)
T ss_pred             Ccc-------------eeEEEeecCCCceeecc-----------------------------------------------
Confidence            543             134455555  444333                                               


Q ss_pred             ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 004255          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA  387 (765)
Q Consensus       308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATa  387 (765)
                                                            +.|.+++|||+..|+.+..|+.|...|.++.|+|..-+|+++
T Consensus       173 --------------------------------------~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G  214 (825)
T KOG0267|consen  173 --------------------------------------GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG  214 (825)
T ss_pred             --------------------------------------CCcceeeeecccccccccccccccccccccccCchhhhhccC
Confidence                                                  346789999999999999999999999999999999999999


Q ss_pred             EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 004255          388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK  452 (765)
Q Consensus       388 S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d  452 (765)
                      |.|. ++++||+++.                 ..+-.  .+.....|.+++|+||++.+++|-..
T Consensus       215 s~d~-tv~f~dletf-----------------e~I~s--~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  215 SSDR-TVRFWDLETF-----------------EVISS--GKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CCCc-eeeeecccee-----------------EEeec--cCCccCCceeeeecCCceeeecCchh
Confidence            9965 5999999652                 11111  11123469999999999988877544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.46  E-value=5e-13  Score=139.62  Aligned_cols=109  Identities=24%  Similarity=0.341  Sum_probs=95.3

Q ss_pred             cccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      +++..||.|+||.+.+|.++..|. +|+..|.|+.||.|+..+.++|. +.++||.-++.       |          .+
T Consensus       279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf-D~tvRiHGlKS-------G----------K~  340 (508)
T KOG0275|consen  279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF-DQTVRIHGLKS-------G----------KC  340 (508)
T ss_pred             hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc-cceEEEecccc-------c----------hh
Confidence            456789999999999999999997 99999999999999999999999 56799998864       4          56


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccc
Q 004255          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT  471 (765)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~  471 (765)
                      +.++ ||+. .-|....|++||.++.++|.||||+||+..+..+..+++.
T Consensus       341 LKEf-rGHs-Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~  388 (508)
T KOG0275|consen  341 LKEF-RGHS-SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP  388 (508)
T ss_pred             HHHh-cCcc-ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence            7777 5754 4599999999999999999999999999998877766654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.45  E-value=2.9e-13  Score=145.25  Aligned_cols=210  Identities=16%  Similarity=0.225  Sum_probs=145.6

Q ss_pred             CCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCce
Q 004255          191 FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLL  265 (765)
Q Consensus       191 ~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~  265 (765)
                      -..+|..|+..|  |.|++|. .+...+|+..+..-...+..|..|             +..|.+++  .|+.+++....
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~-------------Vr~m~ws~~g~wmiSgD~gG~  161 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP-------------VRTMKWSHNGTWMISGDKGGM  161 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc-------------ceeEEEccCCCEEEEcCCCce
Confidence            445889999987  5666655 568999998654333333456653             34577776  78888776532


Q ss_pred             ecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCC-ccccccccccc
Q 004255          266 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS-VWKVGRHAGAD  344 (765)
Q Consensus       266 ~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~-~~~~~~~~~~~  344 (765)
                      +     .-||.-...                     .+        .+..+-.+     ....+++++ +.+     ..+
T Consensus       162 i-----KyWqpnmnn---------------------Vk--------~~~ahh~e-----aIRdlafSpnDsk-----F~t  197 (464)
T KOG0284|consen  162 I-----KYWQPNMNN---------------------VK--------IIQAHHAE-----AIRDLAFSPNDSK-----FLT  197 (464)
T ss_pred             E-----Eecccchhh---------------------hH--------HhhHhhhh-----hhheeccCCCCce-----eEE
Confidence            2     124322110                     00        00000000     000011111 111     346


Q ss_pred             cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255          345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (765)
Q Consensus       345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~  424 (765)
                      +..||+|+|||....+....|.+|--.|.++.|+|.-.+||++|. ++.|++||.++       |          .++..
T Consensus       198 ~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk-DnlVKlWDprS-------g----------~cl~t  259 (464)
T KOG0284|consen  198 CSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK-DNLVKLWDPRS-------G----------SCLAT  259 (464)
T ss_pred             ecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC-CceeEeecCCC-------c----------chhhh
Confidence            788999999999999998999999999999999999999999999 55899999865       4          46777


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCCCC
Q 004255          425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGG  477 (765)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~~~  477 (765)
                      ++ ++ ...|..+.|+++++||+++|.|..+++|||...+....+++|...+.
T Consensus       260 lh-~H-KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~  310 (464)
T KOG0284|consen  260 LH-GH-KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT  310 (464)
T ss_pred             hh-hc-cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence            75 33 34699999999999999999999999999998888888899965443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.45  E-value=3.8e-12  Score=147.02  Aligned_cols=105  Identities=17%  Similarity=0.303  Sum_probs=85.6

Q ss_pred             cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      .++.-|.+|+||++....++..| .|..-|+|++|+| |.+++++||.||+ ||||+|...               .+..
T Consensus       384 LSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~---------------~Vv~  446 (712)
T KOG0283|consen  384 LSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK---------------KVVD  446 (712)
T ss_pred             EeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccc-eEEeecCcC---------------eeEe
Confidence            35678999999999999999998 5899999999999 8899999999876 999999541               0111


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~  469 (765)
                      -++++     ..|++++|+|||++.++|+.+|.+++|+.....-....
T Consensus       447 W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  447 WNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             ehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            12232     46999999999999999999999999998765544443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.45  E-value=9.4e-12  Score=129.17  Aligned_cols=132  Identities=14%  Similarity=0.190  Sum_probs=100.6

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecC-----CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-----RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~-----~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~  245 (765)
                      +.+|++||..|-+..-.+++++.||+-+++|     -+||+|..+ +|++.|+..|..-++|.+|...            
T Consensus       123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~------------  190 (397)
T KOG4283|consen  123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG------------  190 (397)
T ss_pred             cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc------------
Confidence            5799999999999999999999999888876     477888766 7999999999999999888751            


Q ss_pred             ccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCC
Q 004255          246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (765)
Q Consensus       246 ~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~  323 (765)
                       +-.+.++|  .|+                                                                  
T Consensus       191 -vlaV~Wsp~~e~v------------------------------------------------------------------  203 (397)
T KOG4283|consen  191 -VLAVEWSPSSEWV------------------------------------------------------------------  203 (397)
T ss_pred             -eEEEEeccCceeE------------------------------------------------------------------
Confidence             12233333  121                                                                  


Q ss_pred             CCCCCccCCCccccccccccccCCCCeEEEEECCCC------------c---EEEEeccCCCCeEEEEECCCCCEEEEEE
Q 004255          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------A---IISQFKAHTSPISALCFDPSGTLLVTAS  388 (765)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~------------~---~i~~~~aH~~~IsaLaFSpdG~lLATaS  388 (765)
                                        +++++.||.|++||++..            +   .+.+-.+|.+.|+.+||..||.+|++++
T Consensus       204 ------------------LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g  265 (397)
T KOG4283|consen  204 ------------------LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG  265 (397)
T ss_pred             ------------------EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence                              123456777777777532            1   1222347889999999999999999999


Q ss_pred             cCCCEEEEEeCCC
Q 004255          389 VYGNNINIFRIMP  401 (765)
Q Consensus       389 ~dGt~IrVWdi~~  401 (765)
                      .|++ +|+|+...
T Consensus       266 td~r-~r~wn~~~  277 (397)
T KOG4283|consen  266 TDDR-IRVWNMES  277 (397)
T ss_pred             Cccc-eEEeeccc
Confidence            9776 99999754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=5.2e-11  Score=124.52  Aligned_cols=277  Identities=16%  Similarity=0.212  Sum_probs=162.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEc-cCCCcceEe--eeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDV-EDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv-~~~g~~~el--ls~~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      ..+++|-|..+.||.-       ++-+++|..++ ++|||. .+.++...+  ..-|+|.|..|.+.+ |.       | 
T Consensus         9 ~s~h~DlihdVs~D~~-------GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh-PE-------f-   72 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFY-------GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH-PE-------F-   72 (361)
T ss_pred             ccCCcceeeeeeeccc-------CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC-cc-------c-
Confidence            3568899999999982       55677777775 999994 445555544  345788898888885 32       2 


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEEC-----CCC--e--EEEEEe-CCCCEEE
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-----QSH--C--YEHVLR-FRSSVCM  197 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdl-----ktg--~--~v~tL~-~~s~V~s  197 (765)
                        +..||.++-                                 +++|+||.-     +..  +  ...+|. -++.|++
T Consensus        73 --GqvvA~cS~---------------------------------Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~D  117 (361)
T KOG2445|consen   73 --GQVVATCSY---------------------------------DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTD  117 (361)
T ss_pred             --cceEEEEec---------------------------------CCceeeeeecccccccccceeEEEEEeecCCcceeE
Confidence              347776542                                 478999964     221  1  233443 4679999


Q ss_pred             EEecCC----eEE-EEeCCeEEEEECCCCceeE--EEEecCCcccCCCCccccc-cccceeEEccceEEEecCCceecCC
Q 004255          198 VRCSPR----IVA-VGLATQIYCFDALTLENKF--SVLTYPVPQLAGQGAVGIN-VGYGPMAVGPRWLAYASNTLLLSNS  269 (765)
Q Consensus       198 V~~s~~----~La-V~~~~~I~iwD~~t~~~l~--tl~t~p~p~~~~~~~~~~~-~~~~~~Alspr~LAyas~~~~~~~~  269 (765)
                      |.|.|+    .|| ++.++.++||++.+.-.+.  +|. |.....  ...++.+ ....++.+.+               
T Consensus       118 V~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq-~Ei~~~--~~pp~~~~~~~~CvsWn~---------------  179 (361)
T KOG2445|consen  118 VKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ-HEIQNV--IDPPGKNKQPCFCVSWNP---------------  179 (361)
T ss_pred             EEecchhcceEEEEeccCcEEEEEecCCccccccchhh-hhhhhc--cCCcccccCcceEEeecc---------------
Confidence            999983    344 4556789999876533222  111 110000  0000000 0000111110               


Q ss_pred             ccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCC
Q 004255          270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG  349 (765)
Q Consensus       270 G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG  349 (765)
                      ++...                 .+.|           -|.                      +          .++..-+
T Consensus       180 sr~~~-----------------p~iA-----------vgs----------------------~----------e~a~~~~  199 (361)
T KOG2445|consen  180 SRMHE-----------------PLIA-----------VGS----------------------D----------EDAPHLN  199 (361)
T ss_pred             ccccC-----------------ceEE-----------EEc----------------------c----------cCCcccc
Confidence            00000                 0000           000                      0          0122345


Q ss_pred             eEEEEECCCC----cEEEEeccCCCCeEEEEECCC----CCEEEEEEcCCCEEEEEeCCCCccc-CCCCCC--ccccCCc
Q 004255          350 IVVVKDFVTR----AIISQFKAHTSPISALCFDPS----GTLLVTASVYGNNINIFRIMPSCMR-SGSGNH--KYDWNSS  418 (765)
Q Consensus       350 ~V~IwDl~s~----~~i~~~~aH~~~IsaLaFSpd----G~lLATaS~dGt~IrVWdi~~~~~~-~~sG~~--~~~~~~s  418 (765)
                      .++||.....    ..+.++.+|+.||..|+|.|+    -.+||+|+.||  |+||.+...+.. -..+..  ....+-.
T Consensus       200 ~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~  277 (361)
T KOG2445|consen  200 KVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLP  277 (361)
T ss_pred             ceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccc
Confidence            7888876553    256778899999999999995    34799999977  999999752100 000000  0000111


Q ss_pred             ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      .+.+.++  +.|++.|+.+.|+--|..|+++++||+|++|..+
T Consensus       278 v~~vs~~--~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  278 VEKVSEL--DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eEEeeec--cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            1223333  4467789999999999999999999999999865

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.43  E-value=2.5e-12  Score=134.14  Aligned_cols=98  Identities=17%  Similarity=0.244  Sum_probs=82.0

Q ss_pred             CeEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          349 GIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~---~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      -++++||+++.++...-   ..|++.|+++.+|+.|++.+|||.||. |+|||=-.                 .+++..+
T Consensus       238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS-----------------~rCv~t~  299 (430)
T KOG0640|consen  238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVS-----------------NRCVRTI  299 (430)
T ss_pred             CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeecccc-----------------HHHHHHH
Confidence            47889999987765432   369999999999999999999999886 99999422                 2566666


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      .+.+..+.|++..|+.||+||.+++.|.++++|.|.+..
T Consensus       300 ~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  300 GNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             HhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            666666789999999999999999999999999998743

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.42  E-value=8.8e-12  Score=130.81  Aligned_cols=120  Identities=18%  Similarity=0.215  Sum_probs=91.5

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      ..+-||.-..++++..+-+|.+.|+.|+|.+||+.|.+++.++-.|-.||++..      +          ..+|.|.|.
T Consensus       230 q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~------~----------~pv~~L~rh  293 (406)
T KOG2919|consen  230 QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS------R----------DPVYALERH  293 (406)
T ss_pred             ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc------c----------chhhhhhhh
Confidence            345556556677888888999999999999999999999998888999999652      2          577888764


Q ss_pred             c--ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcc-cccccCCCCCCcccccc
Q 004255          429 I--TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLSSQGGDPYLFPVL  485 (765)
Q Consensus       429 ~--~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~-~~~h~~~~~~~~~~p~~  485 (765)
                      .  ++..|+ ....|+|++||+|+.||.|++||++.+|.++. +..|...+.+-.+.|+.
T Consensus       294 v~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m  352 (406)
T KOG2919|consen  294 VGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM  352 (406)
T ss_pred             ccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc
Confidence            3  333444 44569999999999999999999999888554 34454445555555553

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=9e-12  Score=126.70  Aligned_cols=262  Identities=15%  Similarity=0.209  Sum_probs=168.3

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC--cceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS--NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g--~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      .|+|.|.-+-.|.       -++.|+++..++ ++||.+.+++  ++...|.+|.|||.-+.+. .|.       | +  
T Consensus         9 ~H~D~IHda~lDy-------ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk-------~-G--   70 (299)
T KOG1332|consen    9 QHEDMIHDAQLDY-------YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPK-------F-G--   70 (299)
T ss_pred             hhhhhhhHhhhhh-------hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccc-------c-C--
Confidence            4556665444443       245677777665 9999998877  5677889999999999987 332       2 2  


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCCEEEEEecC----C
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSP----R  203 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~---~s~V~sV~~s~----~  203 (765)
                      .+||.++                                 .+++|.||.-.+|+--+...+   .+.|.+|++-|    -
T Consensus        71 ~iLAScs---------------------------------YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl  117 (299)
T KOG1332|consen   71 TILASCS---------------------------------YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGL  117 (299)
T ss_pred             cEeeEee---------------------------------cCceEEEEecCCCchhhhhhhhhhcccceeecccccccce
Confidence            3887643                                 257999999998865444443   46899999987    2


Q ss_pred             eEEEE-eCCeEEEEECCCC-ce-eEEE-EecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCC
Q 004255          204 IVAVG-LATQIYCFDALTL-EN-KFSV-LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP  279 (765)
Q Consensus       204 ~LaV~-~~~~I~iwD~~t~-~~-l~tl-~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~  279 (765)
                      +||++ .|+.|.|++..+- .- -..+ ..|+.             +.+++...|     +.-+                
T Consensus       118 ~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-------------GvnsVswap-----a~~~----------------  163 (299)
T KOG1332|consen  118 LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-------------GVNSVSWAP-----ASAP----------------  163 (299)
T ss_pred             EEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-------------ccceeeecC-----cCCC----------------
Confidence            56664 4678998876543 11 0111 12222             123333322     0000                


Q ss_pred             CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (765)
Q Consensus       280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~  359 (765)
                                 |.++.+.       .++.+                              .-+++++.|..|+||+..++
T Consensus       164 -----------g~~~~~~-------~~~~~------------------------------krlvSgGcDn~VkiW~~~~~  195 (299)
T KOG1332|consen  164 -----------GSLVDQG-------PAAKV------------------------------KRLVSGGCDNLVKIWKFDSD  195 (299)
T ss_pred             -----------ccccccC-------ccccc------------------------------ceeeccCCccceeeeecCCc
Confidence                       1111000       00000                              01346778999999999886


Q ss_pred             c--EEEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 004255          360 A--IISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT  433 (765)
Q Consensus       360 ~--~i~~~~aH~~~IsaLaFSpdG----~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~  433 (765)
                      +  ...+|++|++.|..+++.|.-    ..||+||.||+ +-||.....      +   ..|..  ..|.+|     ...
T Consensus       196 ~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~~e------~---e~wk~--tll~~f-----~~~  258 (299)
T KOG1332|consen  196 SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKDEE------Y---EPWKK--TLLEEF-----PDV  258 (299)
T ss_pred             chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEEEecCc------c---Ccccc--cccccC-----Ccc
Confidence            4  344599999999999999964    46999999887 779986421      1   11211  222222     346


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          434 IQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       434 I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      ++.++||..|+.||++..|+.|.+|.-+..|.
T Consensus       259 ~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk  290 (299)
T KOG1332|consen  259 VWRVSWSLSGNILAVSGGDNKVTLWKENVDGK  290 (299)
T ss_pred             eEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence            99999999999999999999999998665443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.42  E-value=4.9e-12  Score=139.04  Aligned_cols=106  Identities=20%  Similarity=0.233  Sum_probs=77.3

Q ss_pred             cccCCCCeEEEEECCCCcE---EEEeccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255          343 ADMDNAGIVVVKDFVTRAI---ISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~---i~~~~aH~~--~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~  417 (765)
                      +.+..||.|++||..+..+   ...=+||..  .|+||+||+||++|++-+.|++ ++|||++..      .        
T Consensus       333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~------k--------  397 (641)
T KOG0772|consen  333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF------K--------  397 (641)
T ss_pred             hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc------c--------
Confidence            3456799999999865432   222358988  9999999999999999999776 999999642      1        


Q ss_pred             cceEEEEEecccc-cccEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCCCC
Q 004255          418 SHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSS------KGTCHVFVLSPFGGD  466 (765)
Q Consensus       418 s~~~l~~l~rG~~-~a~I~slaFSpDg~~Las~S~------dgTVhIwdl~~~gg~  466 (765)
                        .+|.... |.- ...-++++||||.+.|++|+.      -|++.+||-.++...
T Consensus       398 --kpL~~~t-gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v  450 (641)
T KOG0772|consen  398 --KPLNVRT-GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV  450 (641)
T ss_pred             --cchhhhc-CCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence              3343322 222 224578999999999999975      467888887776543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.41  E-value=3.5e-11  Score=136.34  Aligned_cols=203  Identities=15%  Similarity=0.177  Sum_probs=132.6

Q ss_pred             CCEEEEEECCCCeEEEEEeCCC---CEE-EEEe---cCCeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCcccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRS---SVC-MVRC---SPRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI  243 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s---~V~-sV~~---s~~~LaV-~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~  243 (765)
                      +++++||+-+.++++.+..|-+   -|- .+++   .+-+|++ +.|..|.+|...+.+.+++|.+|..           
T Consensus        34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s-----------  102 (745)
T KOG0301|consen   34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS-----------  102 (745)
T ss_pred             CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccc-----------
Confidence            3689999998888877554432   221 1332   2334554 5567899999999999999999876           


Q ss_pred             ccccceeEEcc---ceEEEecCC--ceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccc
Q 004255          244 NVGYGPMAVGP---RWLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ  318 (765)
Q Consensus       244 ~~~~~~~Alsp---r~LAyas~~--~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~  318 (765)
                          +.++++.   -.|.+++-+  ..+|..|.+                     +                -.+.+|..
T Consensus       103 ----nVC~ls~~~~~~~iSgSWD~TakvW~~~~l---------------------~----------------~~l~gH~a  141 (745)
T KOG0301|consen  103 ----NVCSLSIGEDGTLISGSWDSTAKVWRIGEL---------------------V----------------YSLQGHTA  141 (745)
T ss_pred             ----ceeeeecCCcCceEecccccceEEecchhh---------------------h----------------cccCCcch
Confidence                2344432   112333322  111111100                     0                01111111


Q ss_pred             ccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 004255          319 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR  398 (765)
Q Consensus       319 ~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWd  398 (765)
                      .++      +..+-+.     ....+++.|.+|++|.-  ++.+.+|.+|++-|..|++=+++. +++||.|| .||+|+
T Consensus       142 sVW------Av~~l~e-----~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg-~Ir~w~  206 (745)
T KOG0301|consen  142 SVW------AVASLPE-----NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDG-SIRLWD  206 (745)
T ss_pred             hee------eeeecCC-----CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCc-eEEEEe
Confidence            100      0000000     02347889999999975  788999999999999999988764 66899977 599999


Q ss_pred             CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       399 i~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      +.        |          ..++++. |++ .-|++++-.++++.+++++.|+|++||+..
T Consensus       207 ~~--------g----------e~l~~~~-ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  207 LD--------G----------EVLLEMH-GHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             cc--------C----------ceeeeee-ccc-eEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            83        4          4777775 544 569999988888999999999999999976

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.41  E-value=1e-12  Score=147.65  Aligned_cols=111  Identities=14%  Similarity=0.211  Sum_probs=93.6

Q ss_pred             ccCCCCeEEEEECCCCc--EE--------EEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255          344 DMDNAGIVVVKDFVTRA--II--------SQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK  412 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~--~i--------~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~  412 (765)
                      +++-|+.|.|||+.++.  .+        ..+. +|..+|++++-++.|+.+++|+..+ .+|+||.++       +   
T Consensus       135 SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-~lr~wDprt-------~---  203 (735)
T KOG0308|consen  135 SGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-DLRLWDPRT-------C---  203 (735)
T ss_pred             ecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc-ceEEecccc-------c---
Confidence            45678999999999772  22        2333 8899999999999999999999954 699999866       2   


Q ss_pred             cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccC
Q 004255          413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS  474 (765)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~  474 (765)
                             .++.+|+ |++ ..|.+|-.++||+.+.++|+||||+||||....+..++.-|..
T Consensus       204 -------~kimkLr-GHT-dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e  256 (735)
T KOG0308|consen  204 -------KKIMKLR-GHT-DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE  256 (735)
T ss_pred             -------cceeeee-ccc-cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence                   5778886 755 4699999999999999999999999999999999988888864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=8.1e-11  Score=123.60  Aligned_cols=97  Identities=12%  Similarity=0.237  Sum_probs=80.1

Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      .|-+|+.-++.+.+.+.-|.||...|++|+.+|-+..++++|.|+ +||+||++..      .         ++.+..+.
T Consensus        78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~-tvrLWDlR~~------~---------cqg~l~~~  141 (311)
T KOG1446|consen   78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDK-TVRLWDLRVK------K---------CQGLLNLS  141 (311)
T ss_pred             CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCC-eEEeeEecCC------C---------CceEEecC
Confidence            467899999999999999999999999999999999999999955 5999999742      0         12232332


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                       + .    ..+||.|.|-++|++...+.|+|||+..++.
T Consensus       142 -~-~----pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk  174 (311)
T KOG1446|consen  142 -G-R----PIAAFDPEGLIFALANGSELIKLYDLRSFDK  174 (311)
T ss_pred             -C-C----cceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence             1 1    2379999999999999999999999999854

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=1.7e-12  Score=153.68  Aligned_cols=246  Identities=18%  Similarity=0.235  Sum_probs=166.4

Q ss_pred             EEeeccCCCCCC--CeEEEEEecCc-EEEEEccCC--CcceE---eeeeccCCEEEEEEecCCCCCCCCCCccccCCEEE
Q 004255           63 GFDRLEYGPSVF--KQVLLLGYQNG-FQVLDVEDA--SNFNE---LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL  134 (765)
Q Consensus        63 ~fd~l~~~~~~~--~~vL~~G~~~G-~qVWdv~~~--g~~~e---lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLa  134 (765)
                      +|++|..+....  .-+|+.|..+| |-+||....  ++-.+   ..+.|.|+|+.+.|.|          |..+  +||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~----------~q~n--lLA  133 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP----------FQGN--LLA  133 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc----------cCCc--eee
Confidence            466655432211  24788888887 999999762  33333   4567889999999986          5444  776


Q ss_pred             EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE---eCCCCEEEEEecC---CeEEEE
Q 004255          135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL---RFRSSVCMVRCSP---RIVAVG  208 (765)
Q Consensus       135 vv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL---~~~s~V~sV~~s~---~~LaV~  208 (765)
                      .  |++                               .+.|.|||+..-+.--++   .+.+.|..++.|+   .+||.+
T Consensus       134 S--Ga~-------------------------------~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~  180 (1049)
T KOG0307|consen  134 S--GAD-------------------------------DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASG  180 (1049)
T ss_pred             c--cCC-------------------------------CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhcc
Confidence            5  321                               368999999874433333   3567899999998   588887


Q ss_pred             eCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255          209 LAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (765)
Q Consensus       209 ~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s  287 (765)
                      ... ++.|||++.-+.+..+..++..           .....+++.|                                 
T Consensus       181 s~sg~~~iWDlr~~~pii~ls~~~~~-----------~~~S~l~WhP---------------------------------  216 (1049)
T KOG0307|consen  181 SPSGRAVIWDLRKKKPIIKLSDTPGR-----------MHCSVLAWHP---------------------------------  216 (1049)
T ss_pred             CCCCCceeccccCCCcccccccCCCc-----------cceeeeeeCC---------------------------------
Confidence            765 8999999876544433333220           0001122222                                 


Q ss_pred             CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEec
Q 004255          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFK  366 (765)
Q Consensus       288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~  366 (765)
                       ++.+.++                                 ..            ...+..-.|.+||++.- ..++.++
T Consensus       217 -~~aTql~---------------------------------~A------------s~dd~~PviqlWDlR~assP~k~~~  250 (1049)
T KOG0307|consen  217 -DHATQLL---------------------------------VA------------SGDDSAPVIQLWDLRFASSPLKILE  250 (1049)
T ss_pred             -CCceeee---------------------------------ee------------cCCCCCceeEeecccccCCchhhhc
Confidence             1000000                                 00            01123447999998754 4677889


Q ss_pred             cCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-C
Q 004255          367 AHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-Q  444 (765)
Q Consensus       367 aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~  444 (765)
                      +|...|.+|.|.+.+ .+|+|++.|++ |-+|+..+       |          ..++++-+  ...++.++.|.|-. .
T Consensus       251 ~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~t-------g----------Evl~~~p~--~~nW~fdv~w~pr~P~  310 (1049)
T KOG0307|consen  251 GHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNT-------G----------EVLGELPA--QGNWCFDVQWCPRNPS  310 (1049)
T ss_pred             ccccceeeeccCCCCchhhhcccCCCC-eeEecCCC-------c----------eEeeecCC--CCcceeeeeecCCCcc
Confidence            999999999999977 88999999776 88999865       4          57888864  33579999999876 4


Q ss_pred             EEEEEeCCCcEEEEeCCCC
Q 004255          445 WIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       445 ~Las~S~dgTVhIwdl~~~  463 (765)
                      .+|+++.||.|-||.+...
T Consensus       311 ~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  311 VMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             hhhhheeccceeeeeeecC
Confidence            8999999999999999753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.39  E-value=7.7e-12  Score=136.90  Aligned_cols=262  Identities=16%  Similarity=0.166  Sum_probs=166.7

Q ss_pred             CCeEEEEEecCcEEEEEccCCCcce---Eeee-eccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCC
Q 004255           74 FKQVLLLGYQNGFQVLDVEDASNFN---ELVS-KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN  149 (765)
Q Consensus        74 ~~~vL~~G~~~G~qVWdv~~~g~~~---ells-~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~  149 (765)
                      +-+-+-+|.+++++|||+...++-.   .+-. .+|.-++.++++|+            .|.||  |+|+.         
T Consensus       430 ~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd------------grtLi--vGGea---------  486 (705)
T KOG0639|consen  430 PTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD------------GRTLI--VGGEA---------  486 (705)
T ss_pred             CcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCC------------CceEE--ecccc---------
Confidence            3445667778999999996654321   1211 25667888888875            34554  34321         


Q ss_pred             cCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC---CEEEEEecC--CeEE-EEeCCeEEEEECCCCce
Q 004255          150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIVA-VGLATQIYCFDALTLEN  223 (765)
Q Consensus       150 ~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s---~V~sV~~s~--~~La-V~~~~~I~iwD~~t~~~  223 (765)
                                             .+|.||||.+-...-..+..+   ..++++.|+  ++.. ++.++.|.|||+.+-..
T Consensus       487 -----------------------stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~  543 (705)
T KOG0639|consen  487 -----------------------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL  543 (705)
T ss_pred             -----------------------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence                                   489999998766554444544   457888887  4444 45577899999999988


Q ss_pred             eEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhh
Q 004255          224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH  301 (765)
Q Consensus       224 l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~  301 (765)
                      .+.+.+|+.             +..++.++.  .-|=.++-+.     ..++||..+..                     
T Consensus       544 VrqfqGhtD-------------GascIdis~dGtklWTGGlDn-----tvRcWDlregr---------------------  584 (705)
T KOG0639|consen  544 VRQFQGHTD-------------GASCIDISKDGTKLWTGGLDN-----TVRCWDLREGR---------------------  584 (705)
T ss_pred             eecccCCCC-------------CceeEEecCCCceeecCCCcc-----ceeehhhhhhh---------------------
Confidence            899999886             234566654  1122222221     12345543320                     


Q ss_pred             hhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 004255          302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG  381 (765)
Q Consensus       302 ~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG  381 (765)
                        ++.+   +.|+.   .+.    .-...++.+|      ++.+...+.|.|-... +....++.-|.+-|.+|.|.+-|
T Consensus       585 --qlqq---hdF~S---QIf----SLg~cP~~dW------lavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cG  645 (705)
T KOG0639|consen  585 --QLQQ---HDFSS---QIF----SLGYCPTGDW------LAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCG  645 (705)
T ss_pred             --hhhh---hhhhh---hhe----ecccCCCccc------eeeecccCcEEEEecC-CccceeecccccEEEEEEecccC
Confidence              0000   00000   000    0001112223      2345566777666543 44456788899999999999999


Q ss_pred             CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                      +++++.+. |..++.|.+ |+      |          ..+++..   ....|.++..|-|.+||++||.|....||.+
T Consensus       646 kwfvStGk-DnlLnawrt-Py------G----------asiFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  646 KWFVSTGK-DNLLNAWRT-PY------G----------ASIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ceeeecCc-hhhhhhccC-cc------c----------cceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99999999 557999997 43      5          3566654   2356999999999999999999999999876

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.39  E-value=4.9e-11  Score=124.72  Aligned_cols=274  Identities=15%  Similarity=0.145  Sum_probs=173.1

Q ss_pred             cccceecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCC
Q 004255           42 ASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD  120 (765)
Q Consensus        42 ~s~~~~~~~~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~  120 (765)
                      .+|+..+....+++||.|--+.-|.       .+.++.+++.+ .-+||.++ .+.|.-.+.+|.|.|.+|+|.|     
T Consensus       134 ~t~~~~lvre~~GHkDGiW~Vaa~~-------tqpi~gtASADhTA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~-----  200 (481)
T KOG0300|consen  134 GTVKFRLVRELEGHKDGIWHVAADS-------TQPICGTASADHTARIWSLE-SGACLATYTGHTGSVNSIKFHN-----  200 (481)
T ss_pred             CceeEeehhhhcccccceeeehhhc-------CCcceeecccccceeEEeec-cccceeeecccccceeeEEecc-----
Confidence            3466667767899999986665544       23477777766 48999996 6889999999999999999875     


Q ss_pred             CCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCC---C-------CCCCEEEEEEC-------CCC
Q 004255          121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNC---V-------NSPTAVRFYSF-------QSH  183 (765)
Q Consensus       121 ~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~---~-------~~p~tV~lWdl-------ktg  183 (765)
                              ++.|++..+||++.--=  +        ..-.|+.+..+.   +       -++...+.-|-       .-.
T Consensus       201 --------s~~L~lTaSGD~taHIW--~--------~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR  262 (481)
T KOG0300|consen  201 --------SGLLLLTASGDETAHIW--K--------AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR  262 (481)
T ss_pred             --------ccceEEEccCCcchHHH--H--------HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence                    44576665555431000  0        000011000000   0       00111111110       001


Q ss_pred             eEEEEEeCC-CCEEEEEe--cC-CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEE
Q 004255          184 CYEHVLRFR-SSVCMVRC--SP-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAY  259 (765)
Q Consensus       184 ~~v~tL~~~-s~V~sV~~--s~-~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAy  259 (765)
                      ..+..|..+ +.|.+...  .. +++..+.+.+-.+||++|++.++.|.+|... +            .-+.-.|     
T Consensus       263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E-L------------tHcstHp-----  324 (481)
T KOG0300|consen  263 VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE-L------------THCSTHP-----  324 (481)
T ss_pred             eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh-c------------cccccCC-----
Confidence            244555544 34544442  23 4555566778999999999998888776641 0            1111100     


Q ss_pred             ecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCcccccc
Q 004255          260 ASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGR  339 (765)
Q Consensus       260 as~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~  339 (765)
                        .                            ..||                                             
T Consensus       325 --t----------------------------QrLV---------------------------------------------  329 (481)
T KOG0300|consen  325 --T----------------------------QRLV---------------------------------------------  329 (481)
T ss_pred             --c----------------------------ceEE---------------------------------------------
Confidence              0                            0011                                             


Q ss_pred             ccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255          340 HAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (765)
Q Consensus       340 ~~~~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s  418 (765)
                         .+...|-+.++||+... ..+..|++|+..|+++.|.-|. .++++|+ +.+|+|||++..      .         
T Consensus       330 ---vTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD-DrTvKvWdLrNM------R---------  389 (481)
T KOG0300|consen  330 ---VTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD-DRTVKVWDLRNM------R---------  389 (481)
T ss_pred             ---EEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC-CceEEEeeeccc------c---------
Confidence               12346778999999843 4678899999999999998875 5678887 567999999652      1         


Q ss_pred             ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                       ..+.+++   +...+.-++.|.-+..||.--++..|+|||++-.
T Consensus       390 -splATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  390 -SPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             -Ccceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence             2556665   3346888999988889999999999999999753

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=2e-11  Score=127.76  Aligned_cols=249  Identities=18%  Similarity=0.195  Sum_probs=160.3

Q ss_pred             EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEE
Q 004255           59 VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVA  137 (765)
Q Consensus        59 v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~  137 (765)
                      -..+.|+++       +..|++|..+| +-|||... -..-++++.|--||.++.++++.            | +|+..+
T Consensus        26 a~~~~Fs~~-------G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~dg------------r-~LltsS   84 (405)
T KOG1273|consen   26 AECCQFSRW-------GDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSRDG------------R-KLLTSS   84 (405)
T ss_pred             cceEEeccC-------cceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecCCC------------C-Eeeeec
Confidence            345667763       56999999998 99999964 55788999999999999999752            3 444322


Q ss_pred             cCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCC---e-EEEEeCCeE
Q 004255          138 GEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR---I-VAVGLATQI  213 (765)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~---~-LaV~~~~~I  213 (765)
                      .                                 +..|.+||+..|.+++.++|+++|+.+.+.|+   . ||.-....-
T Consensus        85 ~---------------------------------D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp  131 (405)
T KOG1273|consen   85 R---------------------------------DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESP  131 (405)
T ss_pred             C---------------------------------CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCc
Confidence            1                                 36899999999999999999999999999872   2 222223333


Q ss_pred             EEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcc
Q 004255          214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSL  293 (765)
Q Consensus       214 ~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gsl  293 (765)
                      ++-++.+.  .+++                             |+..++.-                   ...+++-+  
T Consensus       132 ~vi~~s~~--~h~~-----------------------------Lp~d~d~d-------------------ln~sas~~--  159 (405)
T KOG1273|consen  132 VVIDFSDP--KHSV-----------------------------LPKDDDGD-------------------LNSSASHG--  159 (405)
T ss_pred             EEEEecCC--ceee-----------------------------ccCCCccc-------------------cccccccc--
Confidence            33332221  1111                             11111100                   00000000  


Q ss_pred             eeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCC-CCe
Q 004255          294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-SPI  372 (765)
Q Consensus       294 va~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~-~~I  372 (765)
                                                          .+...++    .+.+|...|.+.|+|..+.++++.|+--+ ..|
T Consensus       160 ------------------------------------~fdr~g~----yIitGtsKGkllv~~a~t~e~vas~rits~~~I  199 (405)
T KOG1273|consen  160 ------------------------------------VFDRRGK----YIITGTSKGKLLVYDAETLECVASFRITSVQAI  199 (405)
T ss_pred             ------------------------------------cccCCCC----EEEEecCcceEEEEecchheeeeeeeechheee
Confidence                                                0000111    12356678999999999999999998766 789


Q ss_pred             EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 004255          373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK  452 (765)
Q Consensus       373 saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d  452 (765)
                      ..+-|+..|+.|++-+. +.+||+|++..--..+..|        .....++++--.....-.+++||.||.|++++|..
T Consensus       200 K~I~~s~~g~~liiNts-DRvIR~ye~~di~~~~r~~--------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~  270 (405)
T KOG1273|consen  200 KQIIVSRKGRFLIINTS-DRVIRTYEISDIDDEGRDG--------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR  270 (405)
T ss_pred             eEEEEeccCcEEEEecC-CceEEEEehhhhcccCccC--------CcChhHHHHHHHhhhhhhheeecCCccEEEecccc
Confidence            99999999999999998 6789999986311111111        11222333211111234679999999999888754


Q ss_pred             -CcEEEEeCCC
Q 004255          453 -GTCHVFVLSP  462 (765)
Q Consensus       453 -gTVhIwdl~~  462 (765)
                       ..+.||.-..
T Consensus       271 aHaLYIWE~~~  281 (405)
T KOG1273|consen  271 AHALYIWEKSI  281 (405)
T ss_pred             ceeEEEEecCC
Confidence             5688998543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.39  E-value=3.9e-11  Score=135.97  Aligned_cols=214  Identities=16%  Similarity=0.144  Sum_probs=155.8

Q ss_pred             EEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCC
Q 004255           77 VLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG  155 (765)
Q Consensus        77 vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~  155 (765)
                      .|++|..++ +-||.+. ..+-.-+|.+|...|+++.....              +.|  ++                  
T Consensus        73 ~l~~g~~D~~i~v~~~~-~~~P~~~LkgH~snVC~ls~~~~--------------~~~--iS------------------  117 (745)
T KOG0301|consen   73 RLVVGGMDTTIIVFKLS-QAEPLYTLKGHKSNVCSLSIGED--------------GTL--IS------------------  117 (745)
T ss_pred             ceEeecccceEEEEecC-CCCchhhhhccccceeeeecCCc--------------Cce--Ee------------------
Confidence            466677665 7899985 56677889999999999986532              122  33                  


Q ss_pred             cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC-CeEEEEe-CCeEEEEECCCCceeEEEEecCC
Q 004255          156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVGL-ATQIYCFDALTLENKFSVLTYPV  232 (765)
Q Consensus       156 ~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~  232 (765)
                         |+||          +|+++|-.  ++++.+++.| ..|++|..=+ +.+++|. |..|++|..  ++++.++.+|..
T Consensus       118 ---gSWD----------~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD  180 (745)
T KOG0301|consen  118 ---GSWD----------STAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTD  180 (745)
T ss_pred             ---cccc----------cceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccchh
Confidence               3554          69999965  6777778765 6899998655 5555554 557999986  566778877765


Q ss_pred             cccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255          233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (765)
Q Consensus       233 p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt  312 (765)
                      -                  +  |-||.-+..                                                 
T Consensus       181 ~------------------V--RgL~vl~~~-------------------------------------------------  191 (745)
T KOG0301|consen  181 C------------------V--RGLAVLDDS-------------------------------------------------  191 (745)
T ss_pred             h------------------e--eeeEEecCC-------------------------------------------------
Confidence            1                  0  333332211                                                 


Q ss_pred             ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 004255          313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN  392 (765)
Q Consensus       313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt  392 (765)
                                                  ...++++||.|++||+ +++++....+|++-|.+++..+++.+++|+++|++
T Consensus       192 ----------------------------~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt  242 (745)
T KOG0301|consen  192 ----------------------------HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT  242 (745)
T ss_pred             ----------------------------CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCce
Confidence                                        0124578999999999 78899999999999999998888899999999765


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                       +|+|+..                   .+...+.-  ....||++.+=++|. |++|++||.|+||...+.
T Consensus       243 -lriW~~~-------------------e~~q~I~l--PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  243 -LRIWKKD-------------------ECVQVITL--PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             -EEEeecC-------------------ceEEEEec--CccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence             9999973                   23333321  112599999988886 678889999999988753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.38  E-value=3.6e-11  Score=142.09  Aligned_cols=117  Identities=15%  Similarity=0.202  Sum_probs=89.6

Q ss_pred             cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255          341 AGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (765)
Q Consensus       341 ~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~  420 (765)
                      -+++.+.|++|.|||..+.+.+..|++|.+.|-.+.|+|-|++|||-|. |++|+||++..-      |.         .
T Consensus       143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd-Drtikvwrt~dw------~i---------~  206 (942)
T KOG0973|consen  143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSD-DRTLKVWRTSDW------GI---------E  206 (942)
T ss_pred             EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecC-CceEEEEEcccc------ee---------e
Confidence            3557789999999999999999999999999999999999999999998 556999997431      10         1


Q ss_pred             EEE-EE-e-cccccccEEEEEEccCCCEEEEEeC----CCcEEEEeCCCCCCCcccccccC
Q 004255          421 HLY-KL-H-RGITSATIQDICFSHYSQWIAIVSS----KGTCHVFVLSPFGGDSGFQTLSS  474 (765)
Q Consensus       421 ~l~-~l-~-rG~~~a~I~slaFSpDg~~Las~S~----dgTVhIwdl~~~gg~~~~~~h~~  474 (765)
                      +.. +. . -+. ...+.-++|||||++||+.-.    ..++.|.+-.......++-+|..
T Consensus       207 k~It~pf~~~~~-~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~  266 (942)
T KOG0973|consen  207 KSITKPFEESPL-TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA  266 (942)
T ss_pred             EeeccchhhCCC-cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC
Confidence            111 10 0 011 113677999999999998743    45788888888887888888864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.38  E-value=1.1e-10  Score=122.49  Aligned_cols=176  Identities=14%  Similarity=0.114  Sum_probs=121.0

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeE-EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~L-aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      +++|++||+.+++.+..+.....+..+.+++  +.| +++. ++.|++||+.+++.+..+..+..+              
T Consensus        10 d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------------   75 (300)
T TIGR03866        10 DNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP--------------   75 (300)
T ss_pred             CCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc--------------
Confidence            3689999999999999998777777788876  455 4443 468999999998766555332111              


Q ss_pred             ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (765)
Q Consensus       248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~  327 (765)
                             ..+++..+.                           ..+.                                 
T Consensus        76 -------~~~~~~~~g---------------------------~~l~---------------------------------   88 (300)
T TIGR03866        76 -------ELFALHPNG---------------------------KILY---------------------------------   88 (300)
T ss_pred             -------cEEEECCCC---------------------------CEEE---------------------------------
Confidence                   112222110                           0000                                 


Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG  407 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~  407 (765)
                                     +....++.|++||+.+.+.+..+..+ ..+.+++|+|+|.+|++++.++..+.+||...      
T Consensus        89 ---------------~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~------  146 (300)
T TIGR03866        89 ---------------IANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT------  146 (300)
T ss_pred             ---------------EEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCC------
Confidence                           01234679999999998888887643 34678999999999999998777788889743      


Q ss_pred             CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCC
Q 004255          408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG  464 (765)
Q Consensus       408 sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~g  464 (765)
                       +          ..+..+..+   ..+.+++|+|||++|++++ .+++|++||+....
T Consensus       147 -~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~  190 (300)
T TIGR03866       147 -Y----------EIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK  190 (300)
T ss_pred             -C----------eEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence             2          233222222   2356799999999986554 59999999998643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.37  E-value=3.4e-10  Score=124.51  Aligned_cols=263  Identities=17%  Similarity=0.181  Sum_probs=158.2

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL  133 (765)
                      +|..|+.+.|..  .+     . +++|..+| |-||+... ....+....|+|.|.++-|+.+             ..||
T Consensus       245 ekk~Vl~v~F~e--ng-----d-viTgDS~G~i~Iw~~~~-~~~~k~~~aH~ggv~~L~~lr~-------------Gtll  302 (626)
T KOG2106|consen  245 EKKFVLCVTFLE--NG-----D-VITGDSGGNILIWSKGT-NRISKQVHAHDGGVFSLCMLRD-------------GTLL  302 (626)
T ss_pred             cceEEEEEEEcC--CC-----C-EEeecCCceEEEEeCCC-ceEEeEeeecCCceEEEEEecC-------------ccEe
Confidence            556677777744  22     2 55666666 89999854 3344444499999999999943             2243


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CCEEEEEecCCeEEEEeC
Q 004255          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSPRIVAVGLA  210 (765)
Q Consensus       134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~~~LaV~~~  210 (765)
                       .  |+                               .+++|..|| ..-+.++.++.+   ++|..|+-++.-|.+|..
T Consensus       303 -S--Gg-------------------------------KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt  347 (626)
T KOG2106|consen  303 -S--GG-------------------------------KDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTT  347 (626)
T ss_pred             -e--cC-------------------------------ccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeec
Confidence             2  32                               258999999 334445555555   588988887744666554


Q ss_pred             CeEEEE-ECCCCceeEEEE--ecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCCccccCCCCCC-CCC
Q 004255          211 TQIYCF-DALTLENKFSVL--TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNSGRLSPQNLTP-SGV  282 (765)
Q Consensus       211 ~~I~iw-D~~t~~~l~tl~--t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~--~~~~~G~~s~~~lt~-~~~  282 (765)
                      ..--+. .+.+   -+++.  +|..             ...-+|..|  ..++.++.+.  .+++.-+..|..... +..
T Consensus       348 rN~iL~Gt~~~---~f~~~v~gh~d-------------elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~  411 (626)
T KOG2106|consen  348 RNFILQGTLEN---GFTLTVQGHGD-------------ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAE  411 (626)
T ss_pred             cceEEEeeecC---CceEEEEeccc-------------ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCcee
Confidence            332222 2222   22222  2222             012244444  3444444332  222211122222111 222


Q ss_pred             CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i  362 (765)
                      ...++|+|                                                  .++.+...|...|.|.++...+
T Consensus       412 ~~~fhpsg--------------------------------------------------~va~Gt~~G~w~V~d~e~~~lv  441 (626)
T KOG2106|consen  412 CADFHPSG--------------------------------------------------VVAVGTATGRWFVLDTETQDLV  441 (626)
T ss_pred             EeeccCcc--------------------------------------------------eEEEeeccceEEEEecccceeE
Confidence            22222222                                                  1234556788889999985544


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (765)
Q Consensus       363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (765)
                      ..-.. ..++++++|+|+|.+||.||.|+ .|.||.+...      |          ....++.+ .+.+.|+.+.||+|
T Consensus       442 ~~~~d-~~~ls~v~ysp~G~~lAvgs~d~-~iyiy~Vs~~------g----------~~y~r~~k-~~gs~ithLDwS~D  502 (626)
T KOG2106|consen  442 TIHTD-NEQLSVVRYSPDGAFLAVGSHDN-HIYIYRVSAN------G----------RKYSRVGK-CSGSPITHLDWSSD  502 (626)
T ss_pred             EEEec-CCceEEEEEcCCCCEEEEecCCC-eEEEEEECCC------C----------cEEEEeee-ecCceeEEeeecCC
Confidence            43334 88999999999999999999966 5999998542      3          23333322 22368999999999


Q ss_pred             CCEEEEEeCCCcEEEEe
Q 004255          443 SQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       443 g~~Las~S~dgTVhIwd  459 (765)
                      +++|.+-|-|-.+-.|+
T Consensus       503 s~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  503 SQFLVSNSGDYEILYWK  519 (626)
T ss_pred             CceEEeccCceEEEEEc
Confidence            99999999999999993

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=7.6e-13  Score=150.02  Aligned_cols=173  Identities=17%  Similarity=0.226  Sum_probs=134.7

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (765)
                      .++-||....-..+..|..+ ++|.+|.|+.  .+|+.|.. +.|++||+...+.+++|.+|..+.             .
T Consensus        50 ~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~-------------~  116 (825)
T KOG0267|consen   50 EKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNI-------------T  116 (825)
T ss_pred             eeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCc-------------c
Confidence            56778888766666677765 6999999987  56666554 589999999999989988876631             2


Q ss_pred             eeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255          249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (765)
Q Consensus       249 ~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~  326 (765)
                      .++|.|  .|.                                                                     
T Consensus       117 sv~f~P~~~~~---------------------------------------------------------------------  127 (825)
T KOG0267|consen  117 SVDFHPYGEFF---------------------------------------------------------------------  127 (825)
T ss_pred             eeeeccceEEe---------------------------------------------------------------------
Confidence            233433  000                                                                     


Q ss_pred             CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC
Q 004255          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS  406 (765)
Q Consensus       327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~  406 (765)
                                      +.+..|+.+.+||.....++..+++|...|..+.|+|+|++++.+++ +.+++|||...     
T Consensus       128 ----------------a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-d~tvki~d~~a-----  185 (825)
T KOG0267|consen  128 ----------------ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-DNTVKIWDLTA-----  185 (825)
T ss_pred             ----------------ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC-cceeeeecccc-----
Confidence                            12346778899999999999999999999999999999999999998 66799999843     


Q ss_pred             CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                        |          ..+.+|. + +.+.|.++.|+|..-.|+.||.|+|+++||++++
T Consensus       186 --g----------k~~~ef~-~-~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  186 --G----------KLSKEFK-S-HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             --c----------ccccccc-c-ccccccccccCchhhhhccCCCCceeeeecccee
Confidence              3          2444553 2 3457899999999999999999999999999954

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.37  E-value=1.7e-11  Score=128.30  Aligned_cols=255  Identities=14%  Similarity=0.167  Sum_probs=181.5

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeee--------eccCCEEEEEEecCCCCCCCCCC
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS--------KRDGPVSFLQMQPFPVKDDGCEG  125 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells--------~~dg~V~~v~~lP~p~~~~~~d~  125 (765)
                      .|..+-+|.|-       .+++.|++|+-+| |.|||.. +|++++-|.        -+|.+|.|+.|+.+         
T Consensus       212 ~KSh~EcA~FS-------PDgqyLvsgSvDGFiEVWny~-~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD---------  274 (508)
T KOG0275|consen  212 QKSHVECARFS-------PDGQYLVSGSVDGFIEVWNYT-TGKLRKDLKYQAQDNFMMMDDAVLCISFSRD---------  274 (508)
T ss_pred             cccchhheeeC-------CCCceEeeccccceeeeehhc-cchhhhhhhhhhhcceeecccceEEEeeccc---------
Confidence            34445555553       3589999999999 5999994 677776554        34578888887643         


Q ss_pred             ccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe--CCCCEEEEEecC-
Q 004255          126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR--FRSSVCMVRCSP-  202 (765)
Q Consensus       126 f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~--~~s~V~sV~~s~-  202 (765)
                          .-+||.  |.                               -+++|++|-+.+|.|++.++  +...|.++.|++ 
T Consensus       275 ----sEMlAs--Gs-------------------------------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD  317 (508)
T KOG0275|consen  275 ----SEMLAS--GS-------------------------------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD  317 (508)
T ss_pred             ----HHHhhc--cC-------------------------------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC
Confidence                125553  20                               14799999999999999886  345899999987 


Q ss_pred             --CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCC
Q 004255          203 --RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (765)
Q Consensus       203 --~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~  280 (765)
                        ++|..+.+..|+|.-+..++++..+++|..-         +    +...|       ..+                  
T Consensus       318 ~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy---------v----n~a~f-------t~d------------------  359 (508)
T KOG0275|consen  318 NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY---------V----NEATF-------TDD------------------  359 (508)
T ss_pred             cchhhcccccceEEEeccccchhHHHhcCcccc---------c----cceEE-------cCC------------------
Confidence              6788888889999999999999988887651         0    01111       110                  


Q ss_pred             CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (765)
Q Consensus       281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~  360 (765)
                               |.                                                 .+.+++.||+|+||+..+.+
T Consensus       360 ---------G~-------------------------------------------------~iisaSsDgtvkvW~~Ktte  381 (508)
T KOG0275|consen  360 ---------GH-------------------------------------------------HIISASSDGTVKVWHGKTTE  381 (508)
T ss_pred             ---------CC-------------------------------------------------eEEEecCCccEEEecCcchh
Confidence                     00                                                 11245679999999999999


Q ss_pred             EEEEecc--CCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-ccEEE
Q 004255          361 IISQFKA--HTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-ATIQD  436 (765)
Q Consensus       361 ~i~~~~a--H~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~-a~I~s  436 (765)
                      ++.+|+.  ..-+|+.+-.=|. -..++.|-. .+++.|-++.        |          +.+..+..|... +...+
T Consensus       382 C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~q--------G----------QvVrsfsSGkREgGdFi~  442 (508)
T KOG0275|consen  382 CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQ--------G----------QVVRSFSSGKREGGDFIN  442 (508)
T ss_pred             hhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEecc--------c----------eEEeeeccCCccCCceEE
Confidence            9999984  4568888777664 456666766 5568887773        4          345555444322 34667


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCCCCC
Q 004255          437 ICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD  478 (765)
Q Consensus       437 laFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~  478 (765)
                      ++.||.|.|+.+.+.|+.+.-|.+...+-+..+.-|...+.|
T Consensus       443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG  484 (508)
T KOG0275|consen  443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG  484 (508)
T ss_pred             EEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc
Confidence            889999999999999999999998877667666666544433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=1.3e-10  Score=122.02  Aligned_cols=212  Identities=13%  Similarity=0.106  Sum_probs=131.1

Q ss_pred             CCEEEEEECCCCeEEEEEeC-CCCEEEEEecC-----CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP-----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~-----~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~  245 (765)
                      +-+|+|||+++...+..|-. .+.|.++.|.+     .+|..+.+++|.+|++...+++.+++.|.-.            
T Consensus        62 DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~------------  129 (362)
T KOG0294|consen   62 DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ------------  129 (362)
T ss_pred             CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc------------
Confidence            46999999999988888765 46899999876     3455556678999999999999999987651            


Q ss_pred             ccceeEEcc-ceEEE--ecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255          246 GYGPMAVGP-RWLAY--ASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (765)
Q Consensus       246 ~~~~~Alsp-r~LAy--as~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p  322 (765)
                       ++-+++.| .-||.  +++..+      +.|...+..          +.++                ..|..+..    
T Consensus       130 -Vt~lsiHPS~KLALsVg~D~~l------r~WNLV~Gr----------~a~v----------------~~L~~~at----  172 (362)
T KOG0294|consen  130 -VTDLSIHPSGKLALSVGGDQVL------RTWNLVRGR----------VAFV----------------LNLKNKAT----  172 (362)
T ss_pred             -cceeEecCCCceEEEEcCCcee------eeehhhcCc----------ccee----------------eccCCcce----
Confidence             34567777 33333  343321      112211110          0000                01111100    


Q ss_pred             CCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 004255          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS  402 (765)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~  402 (765)
                           .+.+.+.+..     ........|-||.+.+-++...+.-. ..+.++.|.. +..|++|.+++ .|++||... 
T Consensus       173 -----~v~w~~~Gd~-----F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~-~~~L~vG~d~~-~i~~~D~ds-  238 (362)
T KOG0294|consen  173 -----LVSWSPQGDH-----FVVSGRNKIDIYQLDNASVFREIENP-KRILCATFLD-GSELLVGGDNE-WISLKDTDS-  238 (362)
T ss_pred             -----eeEEcCCCCE-----EEEEeccEEEEEecccHhHhhhhhcc-ccceeeeecC-CceEEEecCCc-eEEEeccCC-
Confidence                 0111111100     01234456778887765544433322 4477788864 55677888755 599999743 


Q ss_pred             cccCCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       403 ~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--SpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                            +          .++..+. + |.+.|-++.+  .|++.+|+++|+||.|+|||++...
T Consensus       239 ------~----------~~~~~~~-A-H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  239 ------D----------TPLTEFL-A-HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             ------C----------ccceeee-c-chhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence                  2          3555554 3 3467888884  5789999999999999999998653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=3.2e-10  Score=114.10  Aligned_cols=247  Identities=17%  Similarity=0.235  Sum_probs=167.7

Q ss_pred             CCCCCCcEEEEEEeeccCCCC-------CCCeEEEEEecC-cEEEEEccCCCcce----------Eeee----eccCCEE
Q 004255           52 SEDLKDQVTWAGFDRLEYGPS-------VFKQVLLLGYQN-GFQVLDVEDASNFN----------ELVS----KRDGPVS  109 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~-------~~~~vL~~G~~~-G~qVWdv~~~g~~~----------ells----~~dg~V~  109 (765)
                      .|+++++-.|...+.|+....       ..+.+.++|.+. .|+|-.....-.++          .++.    .|.|.+.
T Consensus        14 eedd~~k~~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy   93 (350)
T KOG0641|consen   14 EEDDKEKKHFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY   93 (350)
T ss_pred             ccccccccceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE
Confidence            567788888888888775432       357788999876 58887653321111          1222    2347788


Q ss_pred             EEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC--CCeEE-
Q 004255          110 FLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHCYE-  186 (765)
Q Consensus       110 ~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk--tg~~v-  186 (765)
                      +.+++|..             .|||.  |.                     .          +++|++.-+.  |.+.+ 
T Consensus        94 c~~ws~~g-------------eliat--gs---------------------n----------dk~ik~l~fn~dt~~~~g  127 (350)
T KOG0641|consen   94 CTAWSPCG-------------ELIAT--GS---------------------N----------DKTIKVLPFNADTCNATG  127 (350)
T ss_pred             EEEecCcc-------------CeEEe--cC---------------------C----------CceEEEEecccccccccC
Confidence            88888742             37654  21                     1          3567766543  32222 


Q ss_pred             EEEeC---CCCEEEEEecC------CeEEEEeCC--eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccc
Q 004255          187 HVLRF---RSSVCMVRCSP------RIVAVGLAT--QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPR  255 (765)
Q Consensus       187 ~tL~~---~s~V~sV~~s~------~~LaV~~~~--~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr  255 (765)
                      +.++|   .+.|.+++|-.      .+|+.+..+  +||+-|..+++-++-+.+|..               ..+++   
T Consensus       128 ~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg---------------hilal---  189 (350)
T KOG0641|consen  128 HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG---------------HILAL---  189 (350)
T ss_pred             cceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc---------------cEEEE---
Confidence            33444   46899998842      577775543  699989888876666655543               11222   


Q ss_pred             eEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCcc
Q 004255          256 WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVW  335 (765)
Q Consensus       256 ~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~  335 (765)
                         |.             |                                       ++                    
T Consensus       190 ---ys-------------w---------------------------------------n~--------------------  194 (350)
T KOG0641|consen  190 ---YS-------------W---------------------------------------NG--------------------  194 (350)
T ss_pred             ---EE-------------e---------------------------------------cC--------------------
Confidence               11             0                                       00                    


Q ss_pred             ccccccccccCCCCeEEEEECCCCcEEEEecc--C-----CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255          336 KVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--H-----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (765)
Q Consensus       336 ~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a--H-----~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s  408 (765)
                          -..+++++|.+|+.||++-..++.++..  |     .+.|.+++.+|.|++||++-.| ....+|||+-       
T Consensus       195 ----~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d-ssc~lydirg-------  262 (350)
T KOG0641|consen  195 ----AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD-SSCMLYDIRG-------  262 (350)
T ss_pred             ----cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC-CceEEEEeeC-------
Confidence                0123567899999999998888887742  3     3679999999999999999884 5689999963       


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      |          +.+..++-  +.+.|.|+.|||...||.++|-|..|++=|+.
T Consensus       263 ~----------r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  263 G----------RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             C----------ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            3          56666653  55789999999999999999999999998875

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.36  E-value=1.5e-11  Score=134.69  Aligned_cols=112  Identities=22%  Similarity=0.367  Sum_probs=87.2

Q ss_pred             cccCCCCeEEEEECCCCcEEEEe-ccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~-~aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~  420 (765)
                      ..++.+|.|.|||+....++..+ ++|..|...+||+|.. .+||+.+. |+.|.+||+...                 .
T Consensus       181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~-Dkki~~yD~~s~-----------------~  242 (673)
T KOG4378|consen  181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY-DKKINIYDIRSQ-----------------A  242 (673)
T ss_pred             EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc-cceEEEeecccc-----------------c
Confidence            35678999999999988887775 6899999999999965 56788888 566999998531                 1


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc-ccccCC
Q 004255          421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTLSSQ  475 (765)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~-~~h~~~  475 (765)
                      ....|.   ..++...++|+++|.+|++|+.+|.|..||+...+.++.. ..|...
T Consensus       243 s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s  295 (673)
T KOG4378|consen  243 STDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS  295 (673)
T ss_pred             ccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence            111121   1246889999999999999999999999999988877764 466543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.36  E-value=2e-11  Score=127.64  Aligned_cols=239  Identities=15%  Similarity=0.140  Sum_probs=150.1

Q ss_pred             EECCCCeEEEEE----eC-CCCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255          178 YSFQSHCYEHVL----RF-RSSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (765)
Q Consensus       178 Wdlktg~~v~tL----~~-~s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (765)
                      =.++++.....+    .. ...|+.|+...  .++..+.. .+-.||.+++++|+.+..+|..             .+++
T Consensus       129 ssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G-------------SVNs  195 (481)
T KOG0300|consen  129 SSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG-------------SVNS  195 (481)
T ss_pred             eeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc-------------ceee
Confidence            345666544443    33 46899998765  46666554 4699999999999998888765             2567


Q ss_pred             eEEcc-c-eEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhh-hhh--hc------cc--c---eee
Q 004255          250 MAVGP-R-WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS-KQF--AA------GL--S---KTL  313 (765)
Q Consensus       250 ~Alsp-r-~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~-k~l--a~------G~--~---ktl  313 (765)
                      +.|.+ + +++.++.+. ..|    .|+..-...++....|.+-+-  ..-.|.+ ++.  ..      |.  .   -.|
T Consensus       196 ikfh~s~~L~lTaSGD~-taH----IW~~av~~~vP~~~a~~~hSs--EeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l  268 (481)
T KOG0300|consen  196 IKFHNSGLLLLTASGDE-TAH----IWKAAVNWEVPSNNAPSDHSS--EEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL  268 (481)
T ss_pred             EEeccccceEEEccCCc-chH----HHHHhhcCcCCCCCCCCCCCc--hhhhhcccccccccccccccCCceeeeeeeee
Confidence            88888 3 444443331 111    222111111111111111000  0000000 000  00      00  0   011


Q ss_pred             cccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE
Q 004255          314 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN  393 (765)
Q Consensus       314 s~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~  393 (765)
                      +++.          ......+|-.++.+..++.-|.+..+||++++.++..|.+|...++.++-+|..++++|+|. +++
T Consensus       269 tgH~----------~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-DtT  337 (481)
T KOG0300|consen  269 TGHR----------AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-DTT  337 (481)
T ss_pred             eccc----------cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-Cce
Confidence            2211          11122356566666678888999999999999999999999999999999999999999999 677


Q ss_pred             EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       394 IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      +|+||.++.                .+.+..| .|++ ..|+++.|.-|.+ +++||+|.||+|||+.....+
T Consensus       338 FRLWDFRea----------------I~sV~VF-QGHt-dtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsp  391 (481)
T KOG0300|consen  338 FRLWDFREA----------------IQSVAVF-QGHT-DTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSP  391 (481)
T ss_pred             eEeccchhh----------------cceeeee-cccc-cceeEEEEecCCc-eeecCCCceEEEeeeccccCc
Confidence            999999752                0233344 4654 5799999998864 789999999999999876543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.36  E-value=1.2e-10  Score=126.27  Aligned_cols=241  Identities=18%  Similarity=0.227  Sum_probs=163.7

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..++.-.|+|+.|.+.       ...++++..+ .|+||.+.. .....++.-|+++|..+..-|+.             
T Consensus       257 ~~Gh~kki~~v~~~~~-------~~~v~~aSad~~i~vws~~~-~s~~~~~~~h~~~V~~ls~h~tg-------------  315 (506)
T KOG0289|consen  257 LKGHTKKITSVKFHKD-------LDTVITASADEIIRVWSVPL-SSEPTSSRPHEEPVTGLSLHPTG-------------  315 (506)
T ss_pred             ccCcceEEEEEEeccc-------hhheeecCCcceEEeecccc-ccCccccccccccceeeeeccCC-------------
Confidence            4566677888888762       2345566665 599999954 44666778899999999998753             


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-C--CEEEEEecCC--eE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-S--SVCMVRCSPR--IV  205 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s--~V~sV~~s~~--~L  205 (765)
                      ..|+..+                                 .+++..|.|.++|.++...... +  .+.+..|.|.  ++
T Consensus       316 eYllsAs---------------------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif  362 (506)
T KOG0289|consen  316 EYLLSAS---------------------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF  362 (506)
T ss_pred             cEEEEec---------------------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence            2554321                                 1368899999999988777664 3  4689999984  44


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (765)
Q Consensus       206 aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~  284 (765)
                      +.|. ++.|+|||+........+.+|..|             .       +-|+|+.+                      
T Consensus       363 gtgt~d~~vkiwdlks~~~~a~Fpght~~-------------v-------k~i~FsEN----------------------  400 (506)
T KOG0289|consen  363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGP-------------V-------KAISFSEN----------------------  400 (506)
T ss_pred             eccCCCceEEEEEcCCccccccCCCCCCc-------------e-------eEEEeccC----------------------
Confidence            4554 457999999877655554444442             1       22333321                      


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~  364 (765)
                                                    +|+                        ++.+..|+.|++||++..+...+
T Consensus       401 ------------------------------GY~------------------------Lat~add~~V~lwDLRKl~n~kt  426 (506)
T KOG0289|consen  401 ------------------------------GYW------------------------LATAADDGSVKLWDLRKLKNFKT  426 (506)
T ss_pred             ------------------------------ceE------------------------EEEEecCCeEEEEEehhhcccce
Confidence                                          111                        23445678899999998887777


Q ss_pred             eccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255          365 FKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (765)
Q Consensus       365 ~~aH-~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (765)
                      |.-. ..+|.+++|+++|++|+.++.   .++||-....         +-.|    .++.++.  .+.+..+.+.|..+.
T Consensus       427 ~~l~~~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~---------~k~W----~~~~~~~--~~sg~st~v~Fg~~a  488 (506)
T KOG0289|consen  427 IQLDEKKEVNSLSFDQSGTYLGIAGS---DLQVYICKKK---------TKSW----TEIKELA--DHSGLSTGVRFGEHA  488 (506)
T ss_pred             eeccccccceeEEEcCCCCeEEeecc---eeEEEEEecc---------cccc----eeeehhh--hcccccceeeecccc
Confidence            7643 348999999999999999855   4777765320         0112    2333332  122456789999999


Q ss_pred             CEEEEEeCCCcEEEEeC
Q 004255          444 QWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl  460 (765)
                      ++|+++|.|..++|+.+
T Consensus       489 q~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  489 QYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEeeccchhheEEeec
Confidence            99999999999999875

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.34  E-value=3.8e-11  Score=124.75  Aligned_cols=110  Identities=16%  Similarity=0.257  Sum_probs=81.5

Q ss_pred             CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCE-EEEEEcCCCEEEEEeCCCCcccCCCCC-CccccCCcceEEE
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGN-HKYDWNSSHVHLY  423 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~l-LATaS~dGt~IrVWdi~~~~~~~~sG~-~~~~~~~s~~~l~  423 (765)
                      ..+-.|++.|+.+|..-++|.+|...|.++.|+|...+ |||||.||. ||+||++..     +|. ...|.... ....
T Consensus       165 tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-----sgcf~~lD~hn~-k~~p  237 (397)
T KOG4283|consen  165 TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-----SGCFRVLDQHNT-KRPP  237 (397)
T ss_pred             cCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-----cceeEEeecccC-ccCc
Confidence            34557999999999999999999999999999998765 799999775 999999752     121 00010000 0111


Q ss_pred             EEe-cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          424 KLH-RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       424 ~l~-rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .++ +-.+...|..+||+.||++|++.+.|..+++|+...
T Consensus       238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             cccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence            111 223445799999999999999999999999999764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.33  E-value=2.2e-11  Score=130.98  Aligned_cols=243  Identities=14%  Similarity=0.139  Sum_probs=152.6

Q ss_pred             CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeec-cCCEEEEEEecCCCCCCCCCCcccc
Q 004255           51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        51 ~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~-dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..+++...|.+..|-.      .++.+|++|.+.-+.+||++ +|+++..+... .-.|.++++.|+.        |+  
T Consensus       264 tlvgh~~~V~yi~wSP------DdryLlaCg~~e~~~lwDv~-tgd~~~~y~~~~~~S~~sc~W~pDg--------~~--  326 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSP------DDRYLLACGFDEVLSLWDVD-TGDLRHLYPSGLGFSVSSCAWCPDG--------FR--  326 (519)
T ss_pred             eeecccCceEEEEECC------CCCeEEecCchHheeeccCC-cchhhhhcccCcCCCcceeEEccCC--------ce--
Confidence            3566778888888854      24788888888889999995 67777777654 4578899999863        32  


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CCEEEEEecC---Ce
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP---RI  204 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~--s~V~sV~~s~---~~  204 (765)
                        +   |+|.                               .++++.-||+. |+.+...+.-  -.|+++++..   .+
T Consensus       327 --~---V~Gs-------------------------------~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~v  369 (519)
T KOG0293|consen  327 --F---VTGS-------------------------------PDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYV  369 (519)
T ss_pred             --e---EecC-------------------------------CCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEE
Confidence              2   3331                               24789999995 5555555542  3788988775   46


Q ss_pred             EEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCCccccCCCCCCCCCC
Q 004255          205 VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (765)
Q Consensus       205 LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~~~G~~s~~~lt~~~~s  283 (765)
                      |+++.+..|++|+..+..+...+.++..              ..++.+|- .-+|...-    ...+...|+.....   
T Consensus       370 l~v~~d~~i~l~~~e~~~dr~lise~~~--------------its~~iS~d~k~~LvnL----~~qei~LWDl~e~~---  428 (519)
T KOG0293|consen  370 LLVTVDKKIRLYNREARVDRGLISEEQP--------------ITSFSISKDGKLALVNL----QDQEIHLWDLEENK---  428 (519)
T ss_pred             EEEecccceeeechhhhhhhccccccCc--------------eeEEEEcCCCcEEEEEc----ccCeeEEeecchhh---
Confidence            6677778899999988765544433211              23455544 11222110    01122234322110   


Q ss_pred             CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE
Q 004255          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS  363 (765)
Q Consensus       284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~  363 (765)
                               +|-+|         .|.  +.+.|.-. .+-+           ..+-.-+++|+.|+.|+||+..+++.+.
T Consensus       429 ---------lv~kY---------~Gh--kq~~fiIr-SCFg-----------g~~~~fiaSGSED~kvyIWhr~sgkll~  476 (519)
T KOG0293|consen  429 ---------LVRKY---------FGH--KQGHFIIR-SCFG-----------GGNDKFIASGSEDSKVYIWHRISGKLLA  476 (519)
T ss_pred             ---------HHHHh---------hcc--cccceEEE-eccC-----------CCCcceEEecCCCceEEEEEccCCceeE
Confidence                     00000         011  00111000 0000           0000124578899999999999999999


Q ss_pred             EeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCC
Q 004255          364 QFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       364 ~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~  401 (765)
                      .+.||...|+|++++| +-.+||+||+||+ ||||-..+
T Consensus       477 ~LsGHs~~vNcVswNP~~p~m~ASasDDgt-IRIWg~~~  514 (519)
T KOG0293|consen  477 VLSGHSKTVNCVSWNPADPEMFASASDDGT-IRIWGPSD  514 (519)
T ss_pred             eecCCcceeeEEecCCCCHHHhhccCCCCe-EEEecCCc
Confidence            9999999999999999 4568999999775 99998743

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.33  E-value=1.3e-11  Score=141.23  Aligned_cols=224  Identities=15%  Similarity=0.208  Sum_probs=149.5

Q ss_pred             CeEEEEEecCc-EEEEEccCC--CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDA--SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~--g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~  151 (765)
                      .++|+++..+| |-|||+...  .....++..|.-.|..+.|.+             ..|-+++ +|+        |   
T Consensus       100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~-------------tep~ili-SGS--------Q---  154 (839)
T KOG0269|consen  100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS-------------TEPNILI-SGS--------Q---  154 (839)
T ss_pred             hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc-------------CCccEEE-ecC--------C---
Confidence            57999999998 899999652  344557888998999998774             2344443 331        2   


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEEEeCC-eEEEEECCCCc-eeE
Q 004255          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVGLAT-QIYCFDALTLE-NKF  225 (765)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV~~~~-~I~iwD~~t~~-~l~  225 (765)
                                          +++|++||++..+-+.++... ..|.+|.|+|   ..++.+.++ .+.+||++... +.+
T Consensus       155 --------------------Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~  214 (839)
T KOG0269|consen  155 --------------------DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK  214 (839)
T ss_pred             --------------------CceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH
Confidence                                479999999988877777665 4899999998   567777664 69999987543 222


Q ss_pred             EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (765)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l  305 (765)
                      .+..|..|             .-.+.+.|                                                   
T Consensus       215 k~~AH~Gp-------------V~c~nwhP---------------------------------------------------  230 (839)
T KOG0269|consen  215 KLTAHNGP-------------VLCLNWHP---------------------------------------------------  230 (839)
T ss_pred             HhhcccCc-------------eEEEeecC---------------------------------------------------
Confidence            22233322             11122222                                                   


Q ss_pred             hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc-CCCCeEEEEECCCCC-E
Q 004255          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGT-L  383 (765)
Q Consensus       306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a-H~~~IsaLaFSpdG~-l  383 (765)
                                                      ++.-+++++.|++|+|||..+.+.-..+.- -..||.+|+|-|.-+ +
T Consensus       231 --------------------------------nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h  278 (839)
T KOG0269|consen  231 --------------------------------NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH  278 (839)
T ss_pred             --------------------------------CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccch
Confidence                                            111234556789999999987543222221 246999999999755 5


Q ss_pred             EEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCcEEE
Q 004255          384 LVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHV  457 (765)
Q Consensus       384 LATaS~-dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~Las~S~dgTVhI  457 (765)
                      |||+|. +++.|+|||++..+                .+-..+.  .+...++.++|-. |-..|.+++.||||..
T Consensus       279 LAtcsmv~dtsV~VWDvrRPY----------------IP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  279 LATCSMVVDTSVHVWDVRRPY----------------IPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             hhhhhccccceEEEEeecccc----------------ccceeee--ccCccccceeccCCCceeeEeecCccHHHH
Confidence            788764 57889999996421                1222232  1334688899964 6678899999999743

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.32  E-value=7.7e-11  Score=128.53  Aligned_cols=217  Identities=16%  Similarity=0.188  Sum_probs=149.1

Q ss_pred             CCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255           73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (765)
Q Consensus        73 ~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~  151 (765)
                      .++++|++|..+. |+|||++ +.+-...+.+|-+.|..+.|--.|           + .| .+.+              
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~-t~ehv~~~~ghr~~V~~L~fr~gt-----------~-~l-ys~s--------------  263 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCD-TLEHVKVFKGHRGAVSSLAFRKGT-----------S-EL-YSAS--------------  263 (479)
T ss_pred             CCCcEEEecCCCceEEEecCc-ccchhhcccccccceeeeeeecCc-----------c-ce-eeee--------------
Confidence            4688999998875 8999996 566777899999999999876322           1 23 3322              


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEE
Q 004255          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSV  227 (765)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~t~~~l~tl  227 (765)
                                         .+++|++|++..-.++.++-. ++.|.+|....  +.+.|| -|.++++|++..-. ....
T Consensus       264 -------------------~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlif  323 (479)
T KOG0299|consen  264 -------------------ADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIF  323 (479)
T ss_pred             -------------------cCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeee
Confidence                               247999999999999988864 57899998654  566666 46789999983211 1111


Q ss_pred             EecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255          228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (765)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~  307 (765)
                      ..+..                    ++..+|+-++.-                                           
T Consensus       324 rg~~~--------------------sidcv~~In~~H-------------------------------------------  340 (479)
T KOG0299|consen  324 RGGEG--------------------SIDCVAFINDEH-------------------------------------------  340 (479)
T ss_pred             eCCCC--------------------CeeeEEEecccc-------------------------------------------
Confidence            11100                    001122222210                                           


Q ss_pred             ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec-cC-----------CCCeEEE
Q 004255          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AH-----------TSPISAL  375 (765)
Q Consensus       308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-aH-----------~~~IsaL  375 (765)
                                                        .++++.+|.|.+|++...+++.+.+ +|           ...|++|
T Consensus       341 ----------------------------------fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsl  386 (479)
T KOG0299|consen  341 ----------------------------------FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSL  386 (479)
T ss_pred             ----------------------------------eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeee
Confidence                                              1245678999999999988877664 44           1278999


Q ss_pred             EECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 004255          376 CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS  451 (765)
Q Consensus       376 aFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~  451 (765)
                      +.-|...+||++|.+|. ||||-+.+..             .....++.+.   -..-|++|+|+++|++|++|-.
T Consensus       387 a~i~~sdL~asGS~~G~-vrLW~i~~g~-------------r~i~~l~~ls---~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  387 AVIPGSDLLASGSWSGC-VRLWKIEDGL-------------RAINLLYSLS---LVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             EecccCceEEecCCCCc-eEEEEecCCc-------------cccceeeecc---cccEEEEEEEccCCCEEEEecc
Confidence            99999999999999775 9999997621             0114556654   2346999999999998877743

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.32  E-value=3.6e-11  Score=125.52  Aligned_cols=259  Identities=18%  Similarity=0.270  Sum_probs=164.2

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCc--------------ceEeeeeccCCEEEEEEecC
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASN--------------FNELVSKRDGPVSFLQMQPF  116 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~---~g~--------------~~ells~~dg~V~~v~~lP~  116 (765)
                      ||.-+..+.|..       ++.++++|..+. |+|+|++-   ..+              +.++|=.|-.+|..+.|-|.
T Consensus       111 HK~~cR~aafs~-------DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  111 HKSPCRAAAFSP-------DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             cccceeeeeeCC-------CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            455566666644       588999999985 99999971   011              23333344567777777763


Q ss_pred             CCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE---eCCC
Q 004255          117 PVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL---RFRS  193 (765)
Q Consensus       117 p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL---~~~s  193 (765)
                                   ..+|+.  +.                               -+++|+|+|+..-..-+-+   .--.
T Consensus       184 -------------e~ILiS--~s-------------------------------rD~tvKlFDfsK~saKrA~K~~qd~~  217 (430)
T KOG0640|consen  184 -------------ETILIS--GS-------------------------------RDNTVKLFDFSKTSAKRAFKVFQDTE  217 (430)
T ss_pred             -------------hheEEe--cc-------------------------------CCCeEEEEecccHHHHHHHHHhhccc
Confidence                         235543  21                               1479999999754433333   3345


Q ss_pred             CEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCc
Q 004255          194 SVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSG  270 (765)
Q Consensus       194 ~V~sV~~s~--~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G  270 (765)
                      +|.+|.|.|  .+|++|.+. .+++||+.|.+|.-.-  .|.-    |..         -++  .-+-|.+..       
T Consensus       218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa--nPd~----qht---------~ai--~~V~Ys~t~-------  273 (430)
T KOG0640|consen  218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA--NPDD----QHT---------GAI--TQVRYSSTG-------  273 (430)
T ss_pred             eeeeEeecCCCceEEEecCCCceeEEeccceeEeeec--Cccc----ccc---------cce--eEEEecCCc-------
Confidence            899999987  788888875 6999999998763321  1210    000         001  011111110       


Q ss_pred             cccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCe
Q 004255          271 RLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI  350 (765)
Q Consensus       271 ~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~  350 (765)
                                                                                       +    .-++++.||.
T Consensus       274 -----------------------------------------------------------------~----lYvTaSkDG~  284 (430)
T KOG0640|consen  274 -----------------------------------------------------------------S----LYVTASKDGA  284 (430)
T ss_pred             -----------------------------------------------------------------c----EEEEeccCCc
Confidence                                                                             0    0125678999


Q ss_pred             EEEEECCCCcEEEEec-cCCC-CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-----c-CCCCCCc----------
Q 004255          351 VVVKDFVTRAIISQFK-AHTS-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-----R-SGSGNHK----------  412 (765)
Q Consensus       351 V~IwDl~s~~~i~~~~-aH~~-~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~-----~-~~sG~~~----------  412 (765)
                      |+|||=.+++++.+|. +|.+ .|.+..|..+|+++++.+. +.++++|.+.+...     + ...|.+.          
T Consensus       285 IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~-DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht  363 (430)
T KOG0640|consen  285 IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK-DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT  363 (430)
T ss_pred             EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC-cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc
Confidence            9999999999999985 7854 6889999999999999998 56799999976421     0 0011100          


Q ss_pred             --c------------ccCCcc-eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          413 --Y------------DWNSSH-VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       413 --~------------~~~~s~-~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                        +            .|++.. .++..+.-|+ +..+..|.-||.+--++++|+|..++.|--.
T Consensus       364 EdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  364 EDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             cceEEccccccCceeeccccchhhhhhcccCC-CCCceEEEeCCCCCceeeecccceeeeeeec
Confidence              0            122110 1111222343 4568889999999999999999999999643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.32  E-value=2.4e-10  Score=121.85  Aligned_cols=205  Identities=16%  Similarity=0.209  Sum_probs=156.7

Q ss_pred             ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (765)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~  176 (765)
                      -...|..|.++|.++.+.|+             -+|+|.  |++                               +..-.
T Consensus        56 S~~tF~~H~~svFavsl~P~-------------~~l~aT--GGg-------------------------------DD~Af   89 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPN-------------NNLVAT--GGG-------------------------------DDLAF   89 (399)
T ss_pred             ceeehhhcCCceEEEEeCCC-------------CceEEe--cCC-------------------------------CceEE
Confidence            45678899999999999874             246543  322                               24788


Q ss_pred             EEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEE
Q 004255          177 FYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV  252 (765)
Q Consensus       177 lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Al  252 (765)
                      ||++.+|+...++.. ...|.++.|+.  .+||+| ++++|.||++.++...+.+.. +..               -  +
T Consensus        90 lW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~---------------d--i  151 (399)
T KOG0296|consen   90 LWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVE---------------D--I  151 (399)
T ss_pred             EEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccC---------------c--e
Confidence            999999999999875 47999999987  688876 477999999999988777751 110               0  1


Q ss_pred             ccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCC
Q 004255          253 GPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN  332 (765)
Q Consensus       253 spr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s  332 (765)
                        .||-.-...                                +                                    
T Consensus       152 --eWl~WHp~a--------------------------------~------------------------------------  161 (399)
T KOG0296|consen  152 --EWLKWHPRA--------------------------------H------------------------------------  161 (399)
T ss_pred             --EEEEecccc--------------------------------c------------------------------------
Confidence              233332210                                0                                    


Q ss_pred             CccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255          333 SVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK  412 (765)
Q Consensus       333 ~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~  412 (765)
                              .+..+..||.|-.|.+.++...+.|.+|..++++=.|.|||++++|+..||+ |++|+.++       |   
T Consensus       162 --------illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~kt-------g---  222 (399)
T KOG0296|consen  162 --------ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNPKT-------G---  222 (399)
T ss_pred             --------EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEecCC-------C---
Confidence                    0124578999999999998889999999999999999999999999999775 99999976       4   


Q ss_pred             cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                             ++++++.. .......+++++.++..+..++.++.+++-+...
T Consensus       223 -------~p~~~~~~-~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s  264 (399)
T KOG0296|consen  223 -------QPLHKITQ-AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS  264 (399)
T ss_pred             -------ceeEEecc-cccCcCCccccccccceeEeccCCccEEEEcccc
Confidence                   56777642 2233578899999999999999999999876544

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.31  E-value=7.6e-11  Score=125.94  Aligned_cols=105  Identities=20%  Similarity=0.227  Sum_probs=84.3

Q ss_pred             ccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255          342 GADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~---~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s  418 (765)
                      +++++.||.|+|||++++   .++. .++|.+-|+.|.|+.+-.+||+|+.+|+ ++|||++....    +         
T Consensus       273 faScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~----~---------  337 (440)
T KOG0302|consen  273 FASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKS----G---------  337 (440)
T ss_pred             EEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccC----C---------
Confidence            346788999999999987   3443 3899999999999999999999999775 99999976421    1         


Q ss_pred             ceEEEEEecccccccEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCC
Q 004255          419 HVHLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpD-g~~Las~S~dgTVhIwdl~~~g  464 (765)
                       +.+..+.+  |.++|++|.|+|. ...||+++.|.+|.|||+.-..
T Consensus       338 -~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  338 -QPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             -CcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence             35555553  4568999999975 4678999999999999997543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.30  E-value=1.5e-10  Score=126.34  Aligned_cols=176  Identities=12%  Similarity=0.125  Sum_probs=129.4

Q ss_pred             CCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      ++.|.|||..+.+.++.+..+ +.|.+++|-.   ++.+.+.+..|++|++..+..+.++.+|+.               
T Consensus       223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd---------------  287 (479)
T KOG0299|consen  223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD---------------  287 (479)
T ss_pred             CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc---------------
Confidence            368999999999999998865 6999888865   566677788899999998888788877775               


Q ss_pred             ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (765)
Q Consensus       248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~  327 (765)
                      +.++++.    .+        .+++                                                       
T Consensus       288 ~v~~Ida----L~--------reR~-------------------------------------------------------  300 (479)
T KOG0299|consen  288 GVLGIDA----LS--------RERC-------------------------------------------------------  300 (479)
T ss_pred             ceeeech----hc--------ccce-------------------------------------------------------
Confidence            1222210    00        0000                                                       


Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG  407 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~  407 (765)
                                    ...++.|.+++||++. ......|.+|.+.|-|++|=.+ ..++|||.+|. |-+|++..-     
T Consensus       301 --------------vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KK-----  358 (479)
T KOG0299|consen  301 --------------VTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKK-----  358 (479)
T ss_pred             --------------EEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeeccc-----
Confidence                          0123578999999994 3445678999999999999754 67889999775 999998541     


Q ss_pred             CCCCccccCCcceEEEEE--eccccc--------ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          408 SGNHKYDWNSSHVHLYKL--HRGITS--------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       408 sG~~~~~~~~s~~~l~~l--~rG~~~--------a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                                  ..++..  --|...        .+|++|+-.|....+|+||.+|.|+||.+++.
T Consensus       359 ------------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  359 ------------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ------------CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence                        122221  112111        27999999999999999999999999999863

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.30  E-value=9.3e-11  Score=127.46  Aligned_cols=180  Identities=14%  Similarity=0.139  Sum_probs=121.0

Q ss_pred             CCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~  246 (765)
                      ++||++||+.+|++..++.++ .+|.++.+.+   .+|+.| .+++|.++|.+...+       .               
T Consensus       265 D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-------s---------------  322 (463)
T KOG0270|consen  265 DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-------S---------------  322 (463)
T ss_pred             CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-------c---------------
Confidence            589999999999999999955 5999999987   566665 567899999764210       0               


Q ss_pred             cceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255          247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (765)
Q Consensus       247 ~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~  326 (765)
                        ..    .|=+-+.-       -++.|+...+.                                              
T Consensus       323 --~~----~wk~~g~V-------Ekv~w~~~se~----------------------------------------------  343 (463)
T KOG0270|consen  323 --GK----EWKFDGEV-------EKVAWDPHSEN----------------------------------------------  343 (463)
T ss_pred             --Cc----eEEeccce-------EEEEecCCCce----------------------------------------------
Confidence              00    11111110       01122221110                                              


Q ss_pred             CCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcc
Q 004255          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCM  404 (765)
Q Consensus       327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~  404 (765)
                                    ....+..||+|+-+|++.. +++-++++|..+|++|++++. -.+|+|+|.++ +++||++.... 
T Consensus       344 --------------~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~-~Vklw~~~~~~-  407 (463)
T KOG0270|consen  344 --------------SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK-VVKLWKFDVDS-  407 (463)
T ss_pred             --------------eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc-eEEEEeecCCC-
Confidence                          0112357899999999875 899999999999999999985 45789999955 69999985321 


Q ss_pred             cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCC
Q 004255          405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~g  464 (765)
                                  +...+.+.+.-|    ...|.++.|+- -+||.|+..+.++|||+....
T Consensus       408 ------------~~~v~~~~~~~~----rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  408 ------------PKSVKEHSFKLG----RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             ------------Cccccccccccc----ceeecccCCCcceEEEecCccceEEEeecccCh
Confidence                        111122222222    25677888875 468889999999999997653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.30  E-value=8.6e-10  Score=115.27  Aligned_cols=252  Identities=15%  Similarity=0.194  Sum_probs=163.9

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcc-eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~-~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL  132 (765)
                      ..|.|.-..|-..      ...+|+.|+.+| +|+|++++.|.. -+....|+|||-++.+.-+             ...
T Consensus        26 P~DsIS~l~FSP~------~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd-------------gsk   86 (347)
T KOG0647|consen   26 PEDSISALAFSPQ------ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD-------------GSK   86 (347)
T ss_pred             cccchheeEeccc------cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC-------------Cce
Confidence            4567777778651      245777888776 999999876432 3455678899999998843             235


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC----CeEEEE
Q 004255          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVG  208 (765)
Q Consensus       133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~----~~LaV~  208 (765)
                      +++.++                                 ++.+++|||.+++....--+..+|..+++=+    ..|++|
T Consensus        87 Vf~g~~---------------------------------Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG  133 (347)
T KOG0647|consen   87 VFSGGC---------------------------------DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG  133 (347)
T ss_pred             EEeecc---------------------------------CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec
Confidence            554222                                 3689999999997766666778999998744    366775


Q ss_pred             e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255          209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (765)
Q Consensus       209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s  287 (765)
                      . |.+|+.||.+.-..+.++.-   |+                    |  .|+-                          
T Consensus       134 SWDKTlKfWD~R~~~pv~t~~L---Pe--------------------R--vYa~--------------------------  162 (347)
T KOG0647|consen  134 SWDKTLKFWDTRSSNPVATLQL---PE--------------------R--VYAA--------------------------  162 (347)
T ss_pred             ccccceeecccCCCCeeeeeec---cc--------------------e--eeeh--------------------------
Confidence            4 67899999987666555532   11                    0  0111                          


Q ss_pred             CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA  367 (765)
Q Consensus       288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a  367 (765)
                                  |....+                                    .+.+..+..|.+|+|+++.  ..|+.
T Consensus       163 ------------Dv~~pm------------------------------------~vVata~r~i~vynL~n~~--te~k~  192 (347)
T KOG0647|consen  163 ------------DVLYPM------------------------------------AVVATAERHIAVYNLENPP--TEFKR  192 (347)
T ss_pred             ------------hccCce------------------------------------eEEEecCCcEEEEEcCCCc--chhhh
Confidence                        100000                                    0012234567788886653  34555


Q ss_pred             CCCC----eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-----cccEEEEE
Q 004255          368 HTSP----ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-----SATIQDIC  438 (765)
Q Consensus       368 H~~~----IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~-----~a~I~sla  438 (765)
                      +.+|    +.||+.-+|....|-||.+|. +-|..+.+.       .      ....-.++.+|-..     -..|.+|+
T Consensus       193 ~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~-------~------~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  193 IESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDP-------N------PKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             hcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCC-------C------ccCceeEEEeccCCCCCCceEEecceE
Confidence            5554    568888888777899999887 778887541       0      01123455555211     12478999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          439 FSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       439 FSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      |+|.-..|++++.|||+-.||-+.....-...+|.
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~  293 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP  293 (347)
T ss_pred             eecccceEEEecCCceEEEecchhhhhhhccCcCC
Confidence            99999999999999999999987655444444454

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.28  E-value=2.4e-10  Score=119.97  Aligned_cols=222  Identities=14%  Similarity=0.135  Sum_probs=142.1

Q ss_pred             CCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .+..+++|..+ .|+|||+.... ..-.+..|.|.|.+++|.|.         ++.+ .|| . +.+             
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~-qlg~ll~HagsitaL~F~~~---------~S~s-hLl-S-~sd-------------  105 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRK-QLGILLSHAGSITALKFYPP---------LSKS-HLL-S-GSD-------------  105 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchh-hhcceeccccceEEEEecCC---------cchh-hee-e-ecC-------------
Confidence            36788888876 59999996544 34556677999999999874         3333 344 2 221             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC-Ce--EEEEeCCeEEEEECCCCceeEEEE
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RI--VAVGLATQIYCFDALTLENKFSVL  228 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-~~--LaV~~~~~I~iwD~~t~~~l~tl~  228 (765)
                                         ++.|.+|+...=+++++++.+ ..|..|++.| ..  |.|+.|+.++.||+.+|+.-+.+.
T Consensus       106 -------------------DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~  166 (362)
T KOG0294|consen  106 -------------------DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN  166 (362)
T ss_pred             -------------------CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec
Confidence                               368999999999999999865 5899999988 33  456778889999999998777665


Q ss_pred             ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhh
Q 004255          229 TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA  306 (765)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la  306 (765)
                      -...+              ..+.++|  .+.+....+.      ...+|.-..                +..++...+  
T Consensus       167 L~~~a--------------t~v~w~~~Gd~F~v~~~~~------i~i~q~d~A----------------~v~~~i~~~--  208 (362)
T KOG0294|consen  167 LKNKA--------------TLVSWSPQGDHFVVSGRNK------IDIYQLDNA----------------SVFREIENP--  208 (362)
T ss_pred             cCCcc--------------eeeEEcCCCCEEEEEeccE------EEEEecccH----------------hHhhhhhcc--
Confidence            32221              1133333  1111111110      001111000                000000000  


Q ss_pred             cccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE--CCCCCEE
Q 004255          307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF--DPSGTLL  384 (765)
Q Consensus       307 ~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaF--SpdG~lL  384 (765)
                         .+.   .|.  .+.              ....+..+..++.|.+||..+..+...|.||...|-.+.+  +|++.+|
T Consensus       209 ---~r~---l~~--~~l--------------~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l  266 (362)
T KOG0294|consen  209 ---KRI---LCA--TFL--------------DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL  266 (362)
T ss_pred             ---ccc---eee--eec--------------CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence               000   000  000              0012335677899999999999999999999999999884  6889999


Q ss_pred             EEEEcCCCEEEEEeCCC
Q 004255          385 VTASVYGNNINIFRIMP  401 (765)
Q Consensus       385 ATaS~dGt~IrVWdi~~  401 (765)
                      +|+|.||. |+|||+..
T Consensus       267 vTaSSDG~-I~vWd~~~  282 (362)
T KOG0294|consen  267 VTASSDGF-IKVWDIDM  282 (362)
T ss_pred             EEeccCce-EEEEEccc
Confidence            99999775 99999954

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.6e-09  Score=113.68  Aligned_cols=247  Identities=15%  Similarity=0.085  Sum_probs=158.4

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      ...+|.|.-++|+.       ..+-|+++..+| +++||++..  -..+.-.|++|+-..+|-+.            +  
T Consensus        10 npP~d~IS~v~f~~-------~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d~------------~--   66 (323)
T KOG1036|consen   10 NPPEDGISSVKFSP-------SSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFADE------------S--   66 (323)
T ss_pred             CCChhceeeEEEcC-------cCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccCC------------c--
Confidence            34578999999973       134566666776 999999643  23344467788888876631            1  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVG  208 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~  208 (765)
                      -+++  |+                               .++.|+.+|+.+++......+...|.+|..++   .+|+.+
T Consensus        67 ~~~~--G~-------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgs  113 (323)
T KOG1036|consen   67 TIVT--GG-------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGS  113 (323)
T ss_pred             eEEE--ec-------------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcc
Confidence            2222  21                               24799999999998887778888999999885   466667


Q ss_pred             eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255          209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (765)
Q Consensus       209 ~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp  288 (765)
                      .+++|++||.++-....++.. +.             .+..+.++..                                 
T Consensus       114 WD~~ik~wD~R~~~~~~~~d~-~k-------------kVy~~~v~g~---------------------------------  146 (323)
T KOG1036|consen  114 WDKTIKFWDPRNKVVVGTFDQ-GK-------------KVYCMDVSGN---------------------------------  146 (323)
T ss_pred             cCccEEEEecccccccccccc-Cc-------------eEEEEeccCC---------------------------------
Confidence            888999999886222111110 00             0111111100                                 


Q ss_pred             CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc-
Q 004255          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-  367 (765)
Q Consensus       289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a-  367 (765)
                         .                                                 +..+..+..|.+||+.+.....+.+. 
T Consensus       147 ---~-------------------------------------------------LvVg~~~r~v~iyDLRn~~~~~q~reS  174 (323)
T KOG1036|consen  147 ---R-------------------------------------------------LVVGTSDRKVLIYDLRNLDEPFQRRES  174 (323)
T ss_pred             ---E-------------------------------------------------EEEeecCceEEEEEcccccchhhhccc
Confidence               0                                                 11234567899999998765544433 


Q ss_pred             -CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----ccEEEEEEcc
Q 004255          368 -HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----ATIQDICFSH  441 (765)
Q Consensus       368 -H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~-----a~I~slaFSp  441 (765)
                       -.-.+.||++-|++.=.|.+|.+|. |-|=.+.+..     -      ..+..-.++.+|-...     .+|.+|+|+|
T Consensus       175 ~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~-----~------~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  175 SLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSE-----E------AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             cceeEEEEEEEecCCCceEEEeecce-EEEEccCCch-----H------HhhhceeEEeeecccCCceEEEEeceeEecc
Confidence             2447899999999998999999887 4443332210     0      0000111222221111     2589999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          442 YSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       442 Dg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      --+.||+|+.||.|.+||+.+.+..
T Consensus       243 ~~~tfaTgGsDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  243 IHGTFATGGSDGIVNIWDLFNRKRL  267 (323)
T ss_pred             ccceEEecCCCceEEEccCcchhhh
Confidence            9999999999999999999876543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.25  E-value=3.5e-11  Score=127.96  Aligned_cols=214  Identities=16%  Similarity=0.146  Sum_probs=134.8

Q ss_pred             CCEEEEEECCCCeEEEEEeCC-CCEEEEEecC-CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255          172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (765)
                      ++.|+|||+.+.+++.+++.+ +.|..|.+.. .++.||.+.+|+.|-+.- ..++++.+...-       .++.    .
T Consensus        88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~-------~gId----h  155 (433)
T KOG0268|consen   88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVY-------LGID----H  155 (433)
T ss_pred             CceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeeccccc-------cccc----c
Confidence            468999999999999999976 5999999887 677788888999998654 356666542220       0000    0


Q ss_pred             eEEccceEEEecCCceecCCccccCCCCCC-CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255          250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (765)
Q Consensus       250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~-~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~  328 (765)
                      .. ...-.|+++.+.-       .|+.... |..+.+.                     |.              .+...
T Consensus       156 ~~-~~~~FaTcGe~i~-------IWD~~R~~Pv~smsw---------------------G~--------------Dti~s  192 (433)
T KOG0268|consen  156 HR-KNSVFATCGEQID-------IWDEQRDNPVSSMSW---------------------GA--------------DSISS  192 (433)
T ss_pred             cc-ccccccccCceee-------ecccccCCccceeec---------------------CC--------------CceeE
Confidence            00 0022344444322       2332211 1111000                     00              00111


Q ss_pred             ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (765)
Q Consensus       329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s  408 (765)
                      ..+||...   .-++.+..|+.|.|||+....++..+.- +..-+.|+|+|.+--+++|++ |+.+..||++..      
T Consensus       193 vkfNpvET---sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E-D~nlY~~DmR~l------  261 (433)
T KOG0268|consen  193 VKFNPVET---SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE-DHNLYTYDMRNL------  261 (433)
T ss_pred             EecCCCcc---hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc-cccceehhhhhh------
Confidence            22233211   1245677899999999999877665432 223467999998877777777 677999998542      


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      -          +.+. .++|+.. .|.++.|||.|+-+++||-|.||+||.++..
T Consensus       262 ~----------~p~~-v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  262 S----------RPLN-VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             c----------ccch-hhcccce-eEEEeccCCCcchhccccccceEEEeecCCC
Confidence            0          2222 2345544 4999999999999999999999999999863

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=7.2e-11  Score=123.78  Aligned_cols=108  Identities=12%  Similarity=0.222  Sum_probs=86.4

Q ss_pred             ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      +.++..|-.|.|||+. |+.+.++......-...+.||+|++||.++-.-. ++||.+--  ..+  |.     -....+
T Consensus       202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD-VkVwE~~f--~kd--G~-----fqev~r  270 (420)
T KOG2096|consen  202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD-VKVWEPIF--TKD--GT-----FQEVKR  270 (420)
T ss_pred             EEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC-ceEEEEEe--ccC--cc-----hhhhhh
Confidence            4567788899999999 8999999888888888999999999999988544 89999743  121  21     112346


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      ++.|. |+. +.|..++||++++.+++.|.||+++|||++-
T Consensus       271 vf~Lk-GH~-saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  271 VFSLK-GHQ-SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             hheec-cch-hheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            67775 644 5699999999999999999999999999873

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=3.6e-10  Score=123.60  Aligned_cols=122  Identities=13%  Similarity=0.146  Sum_probs=85.2

Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      +++.|.++++||+..+..+.++.- ..+|.|++.+|-++.+..|+.+|. |-+.++......+ .|...-..........
T Consensus       193 TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~-~~v~~k~~~~~~t~~~  269 (476)
T KOG0646|consen  193 TASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQS-AGVNQKGRHEENTQIN  269 (476)
T ss_pred             EecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcce-EEeeehhcCCccc-ccccccccccccceee
Confidence            567899999999999998887643 468999999999999999999775 7777664321000 0000000000112333


Q ss_pred             EEeccccc-ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255          424 KLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       424 ~l~rG~~~-a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~  469 (765)
                      .+. |+.. ..|+|++.|-||..|++|+.||+|.|||+........+
T Consensus       270 ~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  270 VLV-GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             eec-cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence            343 4333 47999999999999999999999999999876554443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.24  E-value=3.6e-09  Score=116.66  Aligned_cols=297  Identities=14%  Similarity=0.179  Sum_probs=174.2

Q ss_pred             CcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcce---Eeeeecc-CCEEEEEEecCCCCCCCCCCccccCCE
Q 004255           57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFN---ELVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (765)
Q Consensus        57 ~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~---ells~~d-g~V~~v~~lP~p~~~~~~d~f~~srpL  132 (765)
                      |-|.-|.|-.      .+++++++..++.|-.|+... +.+.   .++.+++ .-|.+|+|+++.             ..
T Consensus       201 e~v~~a~FHP------td~nliit~Gk~H~~Fw~~~~-~~l~k~~~~fek~ekk~Vl~v~F~eng-------------dv  260 (626)
T KOG2106|consen  201 EVVFLATFHP------TDPNLIITCGKGHLYFWTLRG-GSLVKRQGIFEKREKKFVLCVTFLENG-------------DV  260 (626)
T ss_pred             ceEEEEEecc------CCCcEEEEeCCceEEEEEccC-CceEEEeeccccccceEEEEEEEcCCC-------------CE
Confidence            3455555533      236788888888899999853 3333   2455555 457888888652             22


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCEEEEEecC-CeEEEEe-
Q 004255          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-RIVAVGL-  209 (765)
Q Consensus       133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~-~~LaV~~-  209 (765)
                         +++|.                               .++|.||+-.+.+..+... ++..|+++..-+ ..|+.|. 
T Consensus       261 ---iTgDS-------------------------------~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgK  306 (626)
T KOG2106|consen  261 ---ITGDS-------------------------------GGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGK  306 (626)
T ss_pred             ---EeecC-------------------------------CceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCc
Confidence               34432                               3689999998887777665 457899888765 3444454 


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCCccccCCCCCCCCCCCCcCC
Q 004255          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP  288 (765)
Q Consensus       210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp  288 (765)
                      |.+|..|| .+.+.   ++....|+                ++++ |-+|=...+. +....+-                
T Consensus       307 DRki~~Wd-~~y~k---~r~~elPe----------------~~G~iRtv~e~~~di-~vGTtrN----------------  349 (626)
T KOG2106|consen  307 DRKIILWD-DNYRK---LRETELPE----------------QFGPIRTVAEGKGDI-LVGTTRN----------------  349 (626)
T ss_pred             cceEEecc-ccccc---cccccCch----------------hcCCeeEEecCCCcE-EEeeccc----------------
Confidence            45799999 44433   33323332                1222 3333332221 1100000                


Q ss_pred             CCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255          289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH  368 (765)
Q Consensus       289 ~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH  368 (765)
                        .  +-...      +..+...+..++..+++    +.+.+++.      ....++++|+.|+||+  ..+++-+.. -
T Consensus       350 --~--iL~Gt------~~~~f~~~v~gh~delw----gla~hps~------~q~~T~gqdk~v~lW~--~~k~~wt~~-~  406 (626)
T KOG2106|consen  350 --F--ILQGT------LENGFTLTVQGHGDELW----GLATHPSK------NQLLTCGQDKHVRLWN--DHKLEWTKI-I  406 (626)
T ss_pred             --e--EEEee------ecCCceEEEEeccccee----eEEcCCCh------hheeeccCcceEEEcc--CCceeEEEE-e
Confidence              0  00000      00000001111111111    00111110      1245778999999999  344433322 2


Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI  448 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las  448 (765)
                      ..|+.|+.|+|.| .||.+...|. --|.|+.+                  +.+..++.  .+..|..++|||||.+||+
T Consensus       407 ~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~------------------~~lv~~~~--d~~~ls~v~ysp~G~~lAv  464 (626)
T KOG2106|consen  407 EDPAECADFHPSG-VVAVGTATGR-WFVLDTET------------------QDLVTIHT--DNEQLSVVRYSPDGAFLAV  464 (626)
T ss_pred             cCceeEeeccCcc-eEEEeeccce-EEEEeccc------------------ceeEEEEe--cCCceEEEEEcCCCCEEEE
Confidence            4688999999999 8999999886 56788754                  34445543  2568999999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCCccc-ccccCCCCCCccccccCCCcccCCCCC
Q 004255          449 VSSKGTCHVFVLSPFGGDSGF-QTLSSQGGDPYLFPVLSLPWWCTSSGI  496 (765)
Q Consensus       449 ~S~dgTVhIwdl~~~gg~~~~-~~h~~~~~~~~~~p~~~l~~~~~s~~~  496 (765)
                      +|.|+.|.||.++..|..... .-|.       .+|+..|-|...+.+.
T Consensus       465 gs~d~~iyiy~Vs~~g~~y~r~~k~~-------gs~ithLDwS~Ds~~~  506 (626)
T KOG2106|consen  465 GSHDNHIYIYRVSANGRKYSRVGKCS-------GSPITHLDWSSDSQFL  506 (626)
T ss_pred             ecCCCeEEEEEECCCCcEEEEeeeec-------CceeEEeeecCCCceE
Confidence            999999999999987765443 2222       2677888776666543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=1.3e-09  Score=127.05  Aligned_cols=222  Identities=15%  Similarity=0.197  Sum_probs=153.9

Q ss_pred             EEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCC
Q 004255           77 VLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG  155 (765)
Q Consensus        77 vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~  155 (765)
                      .|++|..+ .+++|.. +.++...+|-+-.-|++.+++.             +++.++|. ++                 
T Consensus        68 ~f~~~s~~~tv~~y~f-ps~~~~~iL~Rftlp~r~~~v~-------------g~g~~iaa-gs-----------------  115 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKF-PSGEEDTILARFTLPIRDLAVS-------------GSGKMIAA-GS-----------------  115 (933)
T ss_pred             ceEEeeccceEEEeeC-CCCCccceeeeeeccceEEEEe-------------cCCcEEEe-ec-----------------
Confidence            46666654 5999999 4576777888878889998876             45557654 22                 


Q ss_pred             cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecC
Q 004255          156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYP  231 (765)
Q Consensus       156 ~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p  231 (765)
                                     .+..|++-++.+......++. ..+|+.|.++|  ++|||+ .+++|+|||+.++.+.+++..-+
T Consensus       116 ---------------dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~  180 (933)
T KOG1274|consen  116 ---------------DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD  180 (933)
T ss_pred             ---------------CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence                           146899999999888888875 47999999998  688875 57799999999999888886422


Q ss_pred             -CcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccc
Q 004255          232 -VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS  310 (765)
Q Consensus       232 -~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~  310 (765)
                       .-+               +-.         ..  +  .++            ++.+|.+|.+++               
T Consensus       181 k~n~---------------~~~---------s~--i--~~~------------~aW~Pk~g~la~---------------  205 (933)
T KOG1274|consen  181 KDNE---------------FIL---------SR--I--CTR------------LAWHPKGGTLAV---------------  205 (933)
T ss_pred             cccc---------------ccc---------cc--e--eee------------eeecCCCCeEEe---------------
Confidence             100               000         00  0  000            111233343321               


Q ss_pred             eeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEE
Q 004255          311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTAS  388 (765)
Q Consensus       311 ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a--H~~~IsaLaFSpdG~lLATaS  388 (765)
                                                        ...|+.|++|+..+......++.  |.+.+..++|||.|+|||+++
T Consensus       206 ----------------------------------~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~  251 (933)
T KOG1274|consen  206 ----------------------------------PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST  251 (933)
T ss_pred             ----------------------------------eccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence                                              23578999999998887777753  455599999999999999999


Q ss_pred             cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255          389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF  458 (765)
Q Consensus       389 ~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIw  458 (765)
                      .+|. |-|||+.++                  ..++++     ..|++++|-|++.-|-.-...|+.-+|
T Consensus       252 ~~g~-I~vWnv~t~------------------~~~~~~-----~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  252 LDGQ-ILVWNVDTH------------------ERHEFK-----RAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             cCCc-EEEEecccc------------------hhcccc-----ceeEEEecCCCCCeeEEEeeccccccC
Confidence            9775 999998642                  112222     248999999998877666555554444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=5.4e-09  Score=118.72  Aligned_cols=248  Identities=13%  Similarity=0.140  Sum_probs=167.5

Q ss_pred             CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        51 ~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      +.+.+-|.+.|+          +.++++.+|..+.+--||+. +.+....+....|++..|++.|.             .
T Consensus        67 ~~drsIE~L~W~----------e~~RLFS~g~sg~i~EwDl~-~lk~~~~~d~~gg~IWsiai~p~-------------~  122 (691)
T KOG2048|consen   67 PEDRSIESLAWA----------EGGRLFSSGLSGSITEWDLH-TLKQKYNIDSNGGAIWSIAINPE-------------N  122 (691)
T ss_pred             CCCCceeeEEEc----------cCCeEEeecCCceEEEEecc-cCceeEEecCCCcceeEEEeCCc-------------c
Confidence            444567888888          13678888888889999995 45555556666789999999863             1


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCCEEEEEecCC--eE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSPR--IV  205 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~---~s~V~sV~~s~~--~L  205 (765)
                      ..|++ +||+                                +.+.+.+...++......|   .++|+++++++.  .|
T Consensus       123 ~~l~I-gcdd--------------------------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i  169 (691)
T KOG2048|consen  123 TILAI-GCDD--------------------------------GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI  169 (691)
T ss_pred             ceEEe-ecCC--------------------------------ceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence            24554 5543                                4677777777776665554   379999999993  36


Q ss_pred             EEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255          206 AVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (765)
Q Consensus       206 aV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~  284 (765)
                      +.|..+ .|+|||+.++..++.+.-.-.    +  ...   +-..+.++-   .|-.+                      
T Consensus       170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d----~--l~k---~~~~iVWSv---~~Lrd----------------------  215 (691)
T KOG2048|consen  170 AGGSIDGVIRIWDVKSGQTLHIITMQLD----R--LSK---REPTIVWSV---LFLRD----------------------  215 (691)
T ss_pred             EecccCceEEEEEcCCCceEEEeeeccc----c--ccc---CCceEEEEE---EEeec----------------------
Confidence            776655 599999999887773321000    0  000   001112110   01000                      


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~  364 (765)
                                                                             .++++++..|+|++||...++.+..
T Consensus       216 -------------------------------------------------------~tI~sgDS~G~V~FWd~~~gTLiqS  240 (691)
T KOG2048|consen  216 -------------------------------------------------------STIASGDSAGTVTFWDSIFGTLIQS  240 (691)
T ss_pred             -------------------------------------------------------CcEEEecCCceEEEEcccCcchhhh
Confidence                                                                   0234567789999999999999999


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 004255          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (765)
Q Consensus       365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (765)
                      +..|...|.||+-++++.+|++|+.|+++|++... +.      +.   .|      +...+|-.+...|.+++-.++  
T Consensus       241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~-~~------~~---~w------v~~~~r~~h~hdvrs~av~~~--  302 (691)
T KOG2048|consen  241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT-TN------KS---EW------VINSRRDLHAHDVRSMAVIEN--  302 (691)
T ss_pred             hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec-CC------cc---ce------eeeccccCCcccceeeeeecc--
Confidence            99999999999999999999999999987766554 21      10   01      112233344556999999887  


Q ss_pred             EEEEEeCCCcEEEEeCCC
Q 004255          445 WIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       445 ~Las~S~dgTVhIwdl~~  462 (765)
                      .|.+|+.|.++.+=....
T Consensus       303 ~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  303 ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             eEEecceeeEEEEccccc
Confidence            889999999987755443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.19  E-value=2.4e-08  Score=108.79  Aligned_cols=105  Identities=11%  Similarity=0.123  Sum_probs=69.8

Q ss_pred             CCCCeEEEEECCC--C--cEEEEeccC------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 004255          346 DNAGIVVVKDFVT--R--AIISQFKAH------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW  415 (765)
Q Consensus       346 ~~dG~V~IwDl~s--~--~~i~~~~aH------~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~  415 (765)
                      ..+++|.+||+..  +  +.+..+..+      ......+.|+|||++|+++...++.|.||++...      +.     
T Consensus       194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~------~~-----  262 (330)
T PRK11028        194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED------GS-----  262 (330)
T ss_pred             cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC------CC-----
Confidence            3479999999973  3  334444322      1123468999999999998776678999998542      10     


Q ss_pred             CCcceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCC
Q 004255          416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGD  466 (765)
Q Consensus       416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~gg~  466 (765)
                        ....+.....|   .....++|+|||++|+++.. +++|.||+++...+.
T Consensus       263 --~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~  309 (330)
T PRK11028        263 --VLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGL  309 (330)
T ss_pred             --eEEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCc
Confidence              00112222222   12457899999999998876 899999999765443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=8.4e-10  Score=120.77  Aligned_cols=220  Identities=16%  Similarity=0.210  Sum_probs=140.9

Q ss_pred             CCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255           73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (765)
Q Consensus        73 ~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~  151 (765)
                      ..+..|+.|.-.| +.+|-+ .+|++..+++.|=..|.++++.-+             .-++.  +++            
T Consensus        91 n~G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~ITcL~fs~d-------------gs~ii--Tgs------------  142 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSITCLKFSDD-------------GSHII--TGS------------  142 (476)
T ss_pred             CCceEEEeecccCcEEEEEe-ccccHHHHHHhhccceeEEEEeCC-------------CcEEE--ecC------------
Confidence            4578888885554 999999 579999999999999999998843             22443  331            


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECC---------CCeEEEEEeCCC-CEEEEEecC-----CeEEEEeCCeEEEE
Q 004255          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ---------SHCYEHVLRFRS-SVCMVRCSP-----RIVAVGLATQIYCF  216 (765)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk---------tg~~v~tL~~~s-~V~sV~~s~-----~~LaV~~~~~I~iw  216 (765)
                                         .++.|.+|++.         +-++++.+..|. +|.++.+..     +++.++.|.+|+||
T Consensus       143 -------------------kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w  203 (476)
T KOG0646|consen  143 -------------------KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW  203 (476)
T ss_pred             -------------------CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE
Confidence                               13678888752         223455555444 788887643     66667788899999


Q ss_pred             ECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecC-CceecCCccccCCCCCCCCCCCCcCCCCCcce
Q 004255          217 DALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLV  294 (765)
Q Consensus       217 D~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-r~LAyas~-~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslv  294 (765)
                      |+..+.++.++.. |.             ....+++.| ....|.+. +..+       ++.+-                
T Consensus       204 dlS~g~LLlti~f-p~-------------si~av~lDpae~~~yiGt~~G~I-------~~~~~----------------  246 (476)
T KOG0646|consen  204 DLSLGVLLLTITF-PS-------------SIKAVALDPAERVVYIGTEEGKI-------FQNLL----------------  246 (476)
T ss_pred             EeccceeeEEEec-CC-------------cceeEEEcccccEEEecCCcceE-------Eeeeh----------------
Confidence            9999998887764 22             135678888 33444432 2111       00000                


Q ss_pred             eeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCC--Ce
Q 004255          295 ARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS--PI  372 (765)
Q Consensus       295 a~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~--~I  372 (765)
                                      -++.+                   ..          .+=..+.++. .+..+..|.+|..  +|
T Consensus       247 ----------------~~~~~-------------------~~----------~~v~~k~~~~-~~t~~~~~~Gh~~~~~I  280 (476)
T KOG0646|consen  247 ----------------FKLSG-------------------QS----------AGVNQKGRHE-ENTQINVLVGHENESAI  280 (476)
T ss_pred             ----------------hcCCc-------------------cc----------cccccccccc-ccceeeeeccccCCcce
Confidence                            00000                   00          0000222222 2455677889988  99


Q ss_pred             EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255          373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (765)
Q Consensus       373 saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (765)
                      +||+.+-||++|++|+.||+ ++|||+..                 .+++..+..  ...+|+.+.|.|-
T Consensus       281 TcLais~DgtlLlSGd~dg~-VcvWdi~S-----------------~Q~iRtl~~--~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  281 TCLAISTDGTLLLSGDEDGK-VCVWDIYS-----------------KQCIRTLQT--SKGPVTNLQINPL  330 (476)
T ss_pred             eEEEEecCccEEEeeCCCCC-EEEEecch-----------------HHHHHHHhh--hccccceeEeecc
Confidence            99999999999999999886 99999843                 145544431  1246777877654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=3.6e-09  Score=115.72  Aligned_cols=172  Identities=14%  Similarity=0.250  Sum_probs=115.9

Q ss_pred             CCEEEEEEC--CCCeEEEEEeCC-CCEEEEEecC--C-eEEEEeCC-eEEEEECCCCceeEE--EEecCCcccCCCCccc
Q 004255          172 PTAVRFYSF--QSHCYEHVLRFR-SSVCMVRCSP--R-IVAVGLAT-QIYCFDALTLENKFS--VLTYPVPQLAGQGAVG  242 (765)
Q Consensus       172 p~tV~lWdl--ktg~~v~tL~~~-s~V~sV~~s~--~-~LaV~~~~-~I~iwD~~t~~~l~t--l~t~p~p~~~~~~~~~  242 (765)
                      +++++||-+  ++...++++.|. .+|...+|.+  . .++++.-. -.|.||+.+.+....  +.+.+.+         
T Consensus       234 d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~---------  304 (514)
T KOG2055|consen  234 DGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK---------  304 (514)
T ss_pred             CCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccc---------
Confidence            478999966  567789999886 4888777766  3 55555443 499999988763221  1111110         


Q ss_pred             cccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccccc
Q 004255          243 INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL  320 (765)
Q Consensus       243 ~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~  320 (765)
                         ....+.+++  .+||..+                                                           
T Consensus       305 ---~~e~FeVShd~~fia~~G-----------------------------------------------------------  322 (514)
T KOG2055|consen  305 ---SMERFEVSHDSNFIAIAG-----------------------------------------------------------  322 (514)
T ss_pred             ---hhheeEecCCCCeEEEcc-----------------------------------------------------------
Confidence               122344444  3444433                                                           


Q ss_pred             CCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255          321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM  400 (765)
Q Consensus       321 ~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~  400 (765)
                                                ..|.|.|.-..+++.+..|+- .+.|..++|+.||+.|..++.+| .|.|||+.
T Consensus       323 --------------------------~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~G-eV~v~nl~  374 (514)
T KOG2055|consen  323 --------------------------NNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTG-EVYVWNLR  374 (514)
T ss_pred             --------------------------cCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCc-eEEEEecC
Confidence                                      445566666666666666653 36789999999999998888878 59999996


Q ss_pred             CCcccCCCCCCccccCCcceEEEEE--ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          401 PSCMRSGSGNHKYDWNSSHVHLYKL--HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       401 ~~~~~~~sG~~~~~~~~s~~~l~~l--~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      ..                 .+++++  ..+.+   =+++|.|++|+|||+||..|.|.|||.+.
T Consensus       375 ~~-----------------~~~~rf~D~G~v~---gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  375 QN-----------------SCLHRFVDDGSVH---GTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             Cc-----------------ceEEEEeecCccc---eeeeeecCCCceEEeccCcceEEEeccch
Confidence            42                 234443  22222   36789999999999999999999999765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.16  E-value=2.1e-10  Score=125.94  Aligned_cols=226  Identities=20%  Similarity=0.237  Sum_probs=138.4

Q ss_pred             EEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEec
Q 004255          186 EHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS  261 (765)
Q Consensus       186 v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas  261 (765)
                      +++|.+-.-|+++.++.  +.+.+|..+.|+|||+..-....-+..  .+++.     .-|+ ...+-|.|  |-|-.++
T Consensus       413 ~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq--Ldcl~-----rdny-iRSckL~pdgrtLivGG  484 (705)
T KOG0639|consen  413 INTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ--LDCLN-----RDNY-IRSCKLLPDGRTLIVGG  484 (705)
T ss_pred             hhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccc--ccccC-----cccc-eeeeEecCCCceEEecc
Confidence            44555556789999876  788899899999999976533222111  10000     0111 23455655  6666665


Q ss_pred             CCceecCCccccCCCCCC-CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccc
Q 004255          262 NTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH  340 (765)
Q Consensus       262 ~~~~~~~~G~~s~~~lt~-~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~  340 (765)
                      ...     ..-.||...+ +.+-... ++.+  -|.|                              ++..+++.+.   
T Consensus       485 eas-----tlsiWDLAapTprikael-tssa--paCy------------------------------ALa~spDakv---  523 (705)
T KOG0639|consen  485 EAS-----TLSIWDLAAPTPRIKAEL-TSSA--PACY------------------------------ALAISPDAKV---  523 (705)
T ss_pred             ccc-----eeeeeeccCCCcchhhhc-CCcc--hhhh------------------------------hhhcCCccce---
Confidence            521     1124665544 1111000 0000  0111                              2223333332   


Q ss_pred             cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc----------cCCCCC
Q 004255          341 AGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM----------RSGSGN  410 (765)
Q Consensus       341 ~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~----------~~~sG~  410 (765)
                       -..+..||.|.|||+.+...+.+|++|+..+.||.+++||+.|-|++-| .++|-||++....          .+..-+
T Consensus       524 -cFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD-ntvRcWDlregrqlqqhdF~SQIfSLg~c  601 (705)
T KOG0639|consen  524 -CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD-NTVRCWDLREGRQLQQHDFSSQIFSLGYC  601 (705)
T ss_pred             -eeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc-cceeehhhhhhhhhhhhhhhhhheecccC
Confidence             1246689999999999999999999999999999999999999999994 5699999976321          000011


Q ss_pred             CccccC-------------CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          411 HKYDWN-------------SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       411 ~~~~~~-------------~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      ..-+|-             .+....|.|.  .+..-|.++.|++-|+|+++.+.|+-+..|.. +||.
T Consensus       602 P~~dWlavGMens~vevlh~skp~kyqlh--lheScVLSlKFa~cGkwfvStGkDnlLnawrt-PyGa  666 (705)
T KOG0639|consen  602 PTGDWLAVGMENSNVEVLHTSKPEKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT-PYGA  666 (705)
T ss_pred             CCccceeeecccCcEEEEecCCccceeec--ccccEEEEEEecccCceeeecCchhhhhhccC-cccc
Confidence            112221             1112233442  34445999999999999999999999999985 4553

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.14  E-value=1.2e-09  Score=119.41  Aligned_cols=100  Identities=23%  Similarity=0.286  Sum_probs=77.4

Q ss_pred             CCCCeEEEEECCCCcE-EEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          346 DNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~-i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      +.=|...+||+++++. ...++-|...|..|+|+|- -.+|||||.|++ .+|||++...     +.      .+ -.|+
T Consensus       298 ~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l~-----~K------~s-p~ls  364 (498)
T KOG4328|consen  298 DNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQLR-----GK------AS-PFLS  364 (498)
T ss_pred             ecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhhc-----CC------CC-ccee
Confidence            3446888999998764 6778889999999999995 567999999665 9999996521     11      11 1244


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      .+.   |...|.+..|||+|-.|++.+.|.+|+|||..
T Consensus       365 t~~---HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  365 TLP---HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ccc---ccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            442   34569999999999889999999999999985

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.14  E-value=1.2e-09  Score=119.22  Aligned_cols=233  Identities=15%  Similarity=0.118  Sum_probs=145.8

Q ss_pred             CCCCeEEEEEecCc-EEEEEcc---CCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCC
Q 004255           72 SVFKQVLLLGYQNG-FQVLDVE---DASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG  147 (765)
Q Consensus        72 ~~~~~vL~~G~~~G-~qVWdv~---~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~  147 (765)
                      .+.++++++|...| +-+||+.   +-..-.-++-.|.++|..|.+.|.-          .+  .+...+          
T Consensus       197 t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n----------~s--~i~ssS----------  254 (498)
T KOG4328|consen  197 TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN----------TS--QIYSSS----------  254 (498)
T ss_pred             cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC----------hh--heeeec----------
Confidence            34578999999988 9999994   2222234667888999999999852          12  222211          


Q ss_pred             CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeCCC-CEEEEEecC---CeEEEEeCCeEEEEECCCC
Q 004255          148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTL  221 (765)
Q Consensus       148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~~s-~V~sV~~s~---~~LaV~~~~~I~iwD~~t~  221 (765)
                                             +++++|+-|++++.  .+.+++-.. ..+++.++.   .+|++..-+...+||.++.
T Consensus       255 -----------------------yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~  311 (498)
T KOG4328|consen  255 -----------------------YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTD  311 (498)
T ss_pred             -----------------------cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecC
Confidence                                   35799999998764  333333122 345566653   4555554457899998876


Q ss_pred             ce-eEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeee
Q 004255          222 EN-KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY  297 (765)
Q Consensus       222 ~~-l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~  297 (765)
                      .. ...++-|...             .+.+++.|   .+                                         
T Consensus       312 ~s~~~~~~lh~kK-------------I~sv~~NP~~p~~-----------------------------------------  337 (498)
T KOG4328|consen  312 GSEYENLRLHKKK-------------ITSVALNPVCPWF-----------------------------------------  337 (498)
T ss_pred             Cccchhhhhhhcc-------------cceeecCCCCchh-----------------------------------------
Confidence            53 2222222221             13344433   11                                         


Q ss_pred             hhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc----EEEEeccCCCCeE
Q 004255          298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPIS  373 (765)
Q Consensus       298 a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~aH~~~Is  373 (765)
                                                                  +++++.|++++|||++...    ++...-.|..+|+
T Consensus       338 --------------------------------------------laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~  373 (498)
T KOG4328|consen  338 --------------------------------------------LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVN  373 (498)
T ss_pred             --------------------------------------------eeecccCcceeeeehhhhcCCCCcceecccccceee
Confidence                                                        2345678899999997632    2334458999999


Q ss_pred             EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc-ccc--cEEEEEEccCCCEEEEEe
Q 004255          374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-TSA--TIQDICFSHYSQWIAIVS  450 (765)
Q Consensus       374 aLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~-~~a--~I~slaFSpDg~~Las~S  450 (765)
                      +..|||+|-.|+|.+.|. .|||||..-  .    +       +....+....-.+ +..  .....+|.||..+|+++-
T Consensus       374 sAyFSPs~gtl~TT~~D~-~IRv~dss~--~----s-------a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~  439 (498)
T KOG4328|consen  374 SAYFSPSGGTLLTTCQDN-EIRVFDSSC--I----S-------AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR  439 (498)
T ss_pred             eeEEcCCCCceEeeccCC-ceEEeeccc--c----c-------ccCCccceeeccCcccccccchhheeCCCccEEEEec
Confidence            999999887799999955 599999731  0    0       0001111221000 101  244578999999999999


Q ss_pred             CCCcEEEEeCC
Q 004255          451 SKGTCHVFVLS  461 (765)
Q Consensus       451 ~dgTVhIwdl~  461 (765)
                      .-.-|-|||-+
T Consensus       440 ~~r~IDv~~~~  450 (498)
T KOG4328|consen  440 YPRPIDVFDGN  450 (498)
T ss_pred             cCcceeEEcCC
Confidence            98889998754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.13  E-value=6.7e-11  Score=129.07  Aligned_cols=208  Identities=15%  Similarity=0.179  Sum_probs=138.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEe--cCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC--SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~--s~~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~  250 (765)
                      +.|-.+|..++.+.+++.....|.+|.|  |.+++||+....+||||-. |..+++|+.+..              +..+
T Consensus       151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~--------------v~rL  215 (545)
T KOG1272|consen  151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIR--------------VARL  215 (545)
T ss_pred             cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCc--------------hhhh
Confidence            5688899999999999999999999997  4589999999999999954 566888876432              2334


Q ss_pred             EEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255          251 AVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (765)
Q Consensus       251 Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~  328 (765)
                      .|=|  =+||.++...      -..++..+           -|.+|+.+.        .|.     +-         .-.
T Consensus       216 eFLPyHfLL~~~~~~G------~L~Y~DVS-----------~GklVa~~~--------t~~-----G~---------~~v  256 (545)
T KOG1272|consen  216 EFLPYHFLLVAASEAG------FLKYQDVS-----------TGKLVASIR--------TGA-----GR---------TDV  256 (545)
T ss_pred             cccchhheeeecccCC------ceEEEeec-----------hhhhhHHHH--------ccC-----Cc---------cch
Confidence            4545  3455555442      22222221           133333211        010     00         000


Q ss_pred             ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (765)
Q Consensus       329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s  408 (765)
                      ...||-   ++ .+-.+...|+|.+|.-.+.+++..+.+|.++|++|+++++|+|+||++. |+.++|||++..      
T Consensus       257 m~qNP~---Na-Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~-Dr~~kIWDlR~~------  325 (545)
T KOG1272|consen  257 MKQNPY---NA-VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL-DRKVKIWDLRNF------  325 (545)
T ss_pred             hhcCCc---cc-eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-ccceeEeeeccc------
Confidence            111111   11 1224677899999999999999999999999999999999999999999 556999999642      


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                                 .++..++   +......++||.-| .||. |.-..|+||.=.
T Consensus       326 -----------~ql~t~~---tp~~a~~ls~Sqkg-lLA~-~~G~~v~iw~d~  362 (545)
T KOG1272|consen  326 -----------YQLHTYR---TPHPASNLSLSQKG-LLAL-SYGDHVQIWKDA  362 (545)
T ss_pred             -----------cccceee---cCCCcccccccccc-ceee-ecCCeeeeehhh
Confidence                       2333333   22346779999776 3444 444569999643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.12  E-value=7.7e-09  Score=117.54  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=71.0

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255          370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV  449 (765)
Q Consensus       370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~  449 (765)
                      ..+..|+.+|+.++++|+.. |+.|||||+..       |.        ..+.++-.+++. +....+...|.|.|||++
T Consensus       597 tTlYDm~Vdp~~k~v~t~cQ-Drnirif~i~s-------gK--------q~k~FKgs~~~e-G~lIKv~lDPSgiY~atS  659 (1080)
T KOG1408|consen  597 TTLYDMAVDPTSKLVVTVCQ-DRNIRIFDIES-------GK--------QVKSFKGSRDHE-GDLIKVILDPSGIYLATS  659 (1080)
T ss_pred             ceEEEeeeCCCcceEEEEec-ccceEEEeccc-------cc--------eeeeecccccCC-CceEEEEECCCccEEEEe
Confidence            46889999999999999999 55699999965       41        123333333332 356679999999999999


Q ss_pred             eCCCcEEEEeCCCCCCCcccccccCCCCC
Q 004255          450 SSKGTCHVFVLSPFGGDSGFQTLSSQGGD  478 (765)
Q Consensus       450 S~dgTVhIwdl~~~gg~~~~~~h~~~~~~  478 (765)
                      ..|.|+-+||.....+.....+|..-++|
T Consensus       660 csdktl~~~Df~sgEcvA~m~GHsE~VTG  688 (1080)
T KOG1408|consen  660 CSDKTLCFVDFVSGECVAQMTGHSEAVTG  688 (1080)
T ss_pred             ecCCceEEEEeccchhhhhhcCcchheee
Confidence            99999999999887777777888765544

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=1.1e-09  Score=122.47  Aligned_cols=98  Identities=19%  Similarity=0.251  Sum_probs=77.8

Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ....|+|||+.....+..+..-...|+.|+.+|.|.-|+.+|.|.+ +.+||+.-       +          ...|+-.
T Consensus       585 Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~~WfDldl-------s----------skPyk~l  646 (733)
T KOG0650|consen  585 TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-MCWFDLDL-------S----------SKPYKTL  646 (733)
T ss_pred             eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-eEEEEccc-------C----------cchhHHh
Confidence            4568999999998888888877889999999999999999999665 88999843       1          1223322


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      |- |...|++++|++-=-.+|++|+|||++||--.-|
T Consensus       647 r~-H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY  682 (733)
T KOG0650|consen  647 RL-HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY  682 (733)
T ss_pred             hh-hhhhhhhhhhccccceeeeecCCCcEEEEeeeee
Confidence            33 3456999999999999999999999999965433

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.10  E-value=5.7e-09  Score=110.24  Aligned_cols=102  Identities=20%  Similarity=0.290  Sum_probs=77.7

Q ss_pred             CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (765)
Q Consensus        75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~  154 (765)
                      .-+.+.|+.+-|+|.|+. .+++..-+-+|.+.|..+++.|.             +|.|++ ++.               
T Consensus       106 p~la~~G~~GvIrVid~~-~~~~~~~~~ghG~sINeik~~p~-------------~~qlvl-s~S---------------  155 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVV-SGQCSKNYRGHGGSINEIKFHPD-------------RPQLVL-SAS---------------  155 (385)
T ss_pred             eeEEeecceeEEEEEecc-hhhhccceeccCccchhhhcCCC-------------CCcEEE-Eec---------------
Confidence            344555555559999994 67788889999999999998873             444444 221               


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCCEEEEEecC--CeEEE-EeCCeEEEEECCCCc
Q 004255          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSP--RIVAV-GLATQIYCFDALTLE  222 (765)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~----~~s~V~sV~~s~--~~LaV-~~~~~I~iwD~~t~~  222 (765)
                                      .+..||+||++++.++..+-    ++..|++|.++.  ++|+. |.|.+|++|++...+
T Consensus       156 ----------------kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~  214 (385)
T KOG1034|consen  156 ----------------KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE  214 (385)
T ss_pred             ----------------CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence                            24799999999999999985    467999999987  45554 677899999988543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.09  E-value=3.1e-09  Score=112.18  Aligned_cols=100  Identities=19%  Similarity=0.312  Sum_probs=85.7

Q ss_pred             cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      ++.-|.|+|.|+.++++...+.+|-..|+.|.|.|+- ++|++||. |+.||+|++++.                 .++.
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk-D~svRlwnI~~~-----------------~Cv~  172 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK-DHSVRLWNIQTD-----------------VCVA  172 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC-CceEEEEeccCC-----------------eEEE
Confidence            4567999999999999999999999999999999974 68889998 678999999762                 4565


Q ss_pred             EEe--cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          424 KLH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       424 ~l~--rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      .+-  .| |+..|.++.|++||.+||+++.|.++++|+|+..
T Consensus       173 VfGG~eg-HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  173 VFGGVEG-HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             Eeccccc-ccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            552  22 4467999999999999999999999999999843

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=1e-09  Score=111.89  Aligned_cols=101  Identities=19%  Similarity=0.279  Sum_probs=75.2

Q ss_pred             ccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCC---C-----------CEEEEEEcCCCEEEEEeCCCCcccC
Q 004255          344 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPS---G-----------TLLVTASVYGNNINIFRIMPSCMRS  406 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~---~~i~~~~aH~~~IsaLaFSpd---G-----------~lLATaS~dGt~IrVWdi~~~~~~~  406 (765)
                      .+..||.|.|.++.+.   .......+|.-.|+++++.|.   |           +.||||+. |+.|+||+...     
T Consensus       121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc-Dn~VkiW~~~~-----  194 (299)
T KOG1332|consen  121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC-DNLVKIWKFDS-----  194 (299)
T ss_pred             EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCC-ccceeeeecCC-----
Confidence            4556788888777654   233446799999999999996   6           67999999 56799999743     


Q ss_pred             CCCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCcEEEEeCCC
Q 004255          407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~Las~S~dgTVhIwdl~~  462 (765)
                        +.         ..+-...+|+ ...|.++||.|.-    .+||++|.||+|.||....
T Consensus       195 --~~---------w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  195 --DS---------WKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             --cc---------hhhhhhhhhc-chhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence              10         2222223454 4679999999975    5799999999999998874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.09  E-value=2.8e-07  Score=97.48  Aligned_cols=179  Identities=22%  Similarity=0.293  Sum_probs=126.4

Q ss_pred             CCEEEEEECCC-CeEEEEEeCC-CCEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255          172 PTAVRFYSFQS-HCYEHVLRFR-SSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (765)
Q Consensus       172 p~tV~lWdlkt-g~~v~tL~~~-s~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~  245 (765)
                      ++++++||... ...+..+..+ ..|..+.+++  +.++++.  +..+++||+.+.+.+.++..|..+            
T Consensus       133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  200 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------  200 (466)
T ss_pred             CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc------------
Confidence            46899999998 7777777765 5888899988  4566654  678999999987666666553321            


Q ss_pred             ccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCC
Q 004255          246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (765)
Q Consensus       246 ~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s  325 (765)
                       ...+++       ....                           ..                                 
T Consensus       201 -v~~~~~-------~~~~---------------------------~~---------------------------------  212 (466)
T COG2319         201 -VSSLAF-------SPDG---------------------------GL---------------------------------  212 (466)
T ss_pred             -eEEEEE-------cCCc---------------------------ce---------------------------------
Confidence             111222       2110                           00                                 


Q ss_pred             CCCccCCCccccccccccccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 004255          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM  404 (765)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~  404 (765)
                                     ....+..|+.|++||...+..+. .+.+|...+ ...|+|++.++++++.++ .+++|++...  
T Consensus       213 ---------------~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~-~~~~~~~~~~--  273 (466)
T COG2319         213 ---------------LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDG-TIRLWDLRSS--  273 (466)
T ss_pred             ---------------EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCC-cEEEeeecCC--
Confidence                           00112568899999999888888 699998886 448999999999898866 5999998642  


Q ss_pred             cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                          .          ..+..+ .++ ...|.++.|+|++..+++++.|+++++|++.....
T Consensus       274 ----~----------~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         274 ----S----------SLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             ----C----------cEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence                1          123333 232 45799999999999999999999999998776543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=3.4e-08  Score=112.18  Aligned_cols=78  Identities=17%  Similarity=0.124  Sum_probs=52.8

Q ss_pred             EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 004255          373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK  452 (765)
Q Consensus       373 saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d  452 (765)
                      ..++|+|||++|+.++. +. +.+||+..       |          .. ..+..+.   ...+++|+|||++|+.++.+
T Consensus       336 ~~~~~SpDG~~ia~~~~-~~-i~~~Dl~~-------g----------~~-~~lt~~~---~~~~~~~sPdG~~i~~~s~~  392 (429)
T PRK01742        336 YSAQISADGKTLVMING-DN-VVKQDLTS-------G----------ST-EVLSSTF---LDESPSISPNGIMIIYSSTQ  392 (429)
T ss_pred             CCccCCCCCCEEEEEcC-CC-EEEEECCC-------C----------Ce-EEecCCC---CCCCceECCCCCEEEEEEcC
Confidence            45789999999998887 44 55689854       3          11 1222121   23568899999999999999


Q ss_pred             CcEEEEeCCCCCC--Cccccccc
Q 004255          453 GTCHVFVLSPFGG--DSGFQTLS  473 (765)
Q Consensus       453 gTVhIwdl~~~gg--~~~~~~h~  473 (765)
                      +.+.+|.+....|  ...+.+|.
T Consensus       393 g~~~~l~~~~~~G~~~~~l~~~~  415 (429)
T PRK01742        393 GLGKVLQLVSADGRFKARLPGSD  415 (429)
T ss_pred             CCceEEEEEECCCCceEEccCCC
Confidence            9999998754333  23344554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=1.8e-08  Score=114.58  Aligned_cols=189  Identities=19%  Similarity=0.239  Sum_probs=127.3

Q ss_pred             CCEEEEEECCCCeE-EEEEeC--CCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255          172 PTAVRFYSFQSHCY-EHVLRF--RSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (765)
Q Consensus       172 p~tV~lWdlktg~~-v~tL~~--~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~  246 (765)
                      .+.|.||++..+=+ ...+..  ...|-++++.+  +++-+++.+.|.-||+.+++.++.+.....             .
T Consensus        46 ~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-------------~  112 (691)
T KOG2048|consen   46 DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-------------A  112 (691)
T ss_pred             CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCc-------------c
Confidence            36899999987643 233443  35899999874  677778889999999999998777653222             1


Q ss_pred             cceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255          247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (765)
Q Consensus       247 ~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~  326 (765)
                      ..++|+.|       .                           +..                                  
T Consensus       113 IWsiai~p-------~---------------------------~~~----------------------------------  124 (691)
T KOG2048|consen  113 IWSIAINP-------E---------------------------NTI----------------------------------  124 (691)
T ss_pred             eeEEEeCC-------c---------------------------cce----------------------------------
Confidence            23444432       0                           000                                  


Q ss_pred             CCccCCCccccccccccccCCCCeEEEEECCCCcEEE--EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 004255          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM  404 (765)
Q Consensus       327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~--~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~  404 (765)
                                     ++-+..||.+..++...++...  .|.-.++.|.+|+|+|+|+.||+||.|| .||+||+..   
T Consensus       125 ---------------l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~---  185 (691)
T KOG2048|consen  125 ---------------LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKS---  185 (691)
T ss_pred             ---------------EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc-eEEEEEcCC---
Confidence                           0123456766666666655432  3445578999999999999999999966 699999965   


Q ss_pred             cCCCCCCccccCCcceE-----EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccC
Q 004255          405 RSGSGNHKYDWNSSHVH-----LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS  474 (765)
Q Consensus       405 ~~~sG~~~~~~~~s~~~-----l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~  474 (765)
                          |.        ..+     +..+.++ ...-||++.|=.|+ .|++|.+.|+|.+||-....-...+..|..
T Consensus       186 ----~~--------t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a  246 (691)
T KOG2048|consen  186 ----GQ--------TLHIITMQLDRLSKR-EPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA  246 (691)
T ss_pred             ----Cc--------eEEEeeecccccccC-CceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc
Confidence                21        012     2223222 23458999998776 688999999999999877655555555544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.03  E-value=1.5e-08  Score=105.55  Aligned_cols=246  Identities=15%  Similarity=0.198  Sum_probs=150.2

Q ss_pred             CCeEEEEEec--------CcEEEEEccCCCcc-----eEeeee----ccCCEEEEEEecCCCCCCCCCCccccCCEEEEE
Q 004255           74 FKQVLLLGYQ--------NGFQVLDVEDASNF-----NELVSK----RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVV  136 (765)
Q Consensus        74 ~~~vL~~G~~--------~G~qVWdv~~~g~~-----~ells~----~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv  136 (765)
                      ++++|++.|.        .+.-||.+...-+-     .|.++.    +-|.|.+|++-|+.          .   .|+.+
T Consensus        75 d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns----------~---klasm  141 (370)
T KOG1007|consen   75 DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS----------D---KLASM  141 (370)
T ss_pred             CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC----------C---eeEEe
Confidence            5789999997        34789999543222     233333    33789999999862          1   23332


Q ss_pred             EcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCC------CCEEEEEecC----CeE
Q 004255          137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFR------SSVCMVRCSP----RIV  205 (765)
Q Consensus       137 ~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-v~tL~~~------s~V~sV~~s~----~~L  205 (765)
                      .                                  ++.|.||++..+.. +..+.-+      ..-.+=+.+|    +.+
T Consensus       142 ~----------------------------------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  142 D----------------------------------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             c----------------------------------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence            1                                  25799999987765 5555322      2334444555    688


Q ss_pred             EEEeCCeEEEEECCCCceeEEEEe-cCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255          206 AVGLATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (765)
Q Consensus       206 aV~~~~~I~iwD~~t~~~l~tl~t-~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~  284 (765)
                      ++..+.++.+||++|+++...|.. |--.             +..+.+.|       +.                     
T Consensus       188 ~tt~d~tl~~~D~RT~~~~~sI~dAHgq~-------------vrdlDfNp-------nk---------------------  226 (370)
T KOG1007|consen  188 ATTSDSTLQFWDLRTMKKNNSIEDAHGQR-------------VRDLDFNP-------NK---------------------  226 (370)
T ss_pred             EEeCCCcEEEEEccchhhhcchhhhhcce-------------eeeccCCC-------Cc---------------------
Confidence            888899999999999987776653 2110             01112211       00                     


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEE
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIIS  363 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~  363 (765)
                                                                         .   --+++++.||.|+|||.+.- .++.
T Consensus       227 ---------------------------------------------------q---~~lvt~gDdgyvriWD~R~tk~pv~  252 (370)
T KOG1007|consen  227 ---------------------------------------------------Q---HILVTCGDDGYVRIWDTRKTKFPVQ  252 (370)
T ss_pred             ---------------------------------------------------e---EEEEEcCCCccEEEEeccCCCcccc
Confidence                                                               0   01245678999999999764 5788


Q ss_pred             EeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccC--CCCCCccc--cCCcceEEEEEecc------cccc
Q 004255          364 QFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRS--GSGNHKYD--WNSSHVHLYKLHRG------ITSA  432 (765)
Q Consensus       364 ~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~--~sG~~~~~--~~~s~~~l~~l~rG------~~~a  432 (765)
                      .+.+|...|.++.|+|. .++++|++.| ..+.+|....-....  ..+....+  -..+..+..-|.-|      .+..
T Consensus       253 el~~HsHWvW~VRfn~~hdqLiLs~~SD-s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED  331 (370)
T KOG1007|consen  253 ELPGHSHWVWAVRFNPEHDQLILSGGSD-SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED  331 (370)
T ss_pred             ccCCCceEEEEEEecCccceEEEecCCC-ceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence            99999999999999995 6678898885 458898763210000  00000000  00011111111111      2335


Q ss_pred             cEEEEEEccCCCE-EEEEeCCCcEEEEeCCC
Q 004255          433 TIQDICFSHYSQW-IAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       433 ~I~slaFSpDg~~-Las~S~dgTVhIwdl~~  462 (765)
                      .|++++||.-.-| +|+-|-||.+-|=.+.+
T Consensus       332 SVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  332 SVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            6999999977667 56678899998866654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=2.5e-08  Score=111.92  Aligned_cols=312  Identities=16%  Similarity=0.136  Sum_probs=177.6

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL  132 (765)
                      +|++.|.....|-       .+..|+.|.++| ++||-+. +|.|...+.- |+-|++|+|.|.+           +.++
T Consensus       398 GHtg~Vr~iSvdp-------~G~wlasGsdDGtvriWEi~-TgRcvr~~~~-d~~I~~vaw~P~~-----------~~~v  457 (733)
T KOG0650|consen  398 GHTGLVRSISVDP-------SGEWLASGSDDGTVRIWEIA-TGRCVRTVQF-DSEIRSVAWNPLS-----------DLCV  457 (733)
T ss_pred             ccCCeEEEEEecC-------CcceeeecCCCCcEEEEEee-cceEEEEEee-cceeEEEEecCCC-----------Ccee
Confidence            4556666555443       477999999998 9999994 6777666654 4689999999874           4578


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcC---CCCCCCCCCCCEEEEEECC---CCe--EEEEEeCCCCEEEEEecC--
Q 004255          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMD---SQSGNCVNSPTAVRFYSFQ---SHC--YEHVLRFRSSVCMVRCSP--  202 (765)
Q Consensus       133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~---~~~~~~~~~p~tV~lWdlk---tg~--~v~tL~~~s~V~sV~~s~--  202 (765)
                      ||+..++...-..+  .++  .-+-.+..+   ....+....+..|-.|.-.   .++  .-.++++..+|..|...+  
T Consensus       458 LAvA~~~~~~ivnp--~~G--~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG  533 (733)
T KOG0650|consen  458 LAVAVGECVLIVNP--IFG--DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG  533 (733)
T ss_pred             EEEEecCceEEeCc--ccc--chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence            88755432100000  000  000000000   0000111234578889643   222  234567888999999887  


Q ss_pred             CeEEEEeC----CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCC
Q 004255          203 RIVAVGLA----TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQN  276 (765)
Q Consensus       203 ~~LaV~~~----~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~  276 (765)
                      ++||+...    ..|.|+++...+-.       .|      +.........+.|.|  -+|-.++...+      +..+.
T Consensus       534 DYlatV~~~~~~~~VliHQLSK~~sQ-------~P------F~kskG~vq~v~FHPs~p~lfVaTq~~v------RiYdL  594 (733)
T KOG0650|consen  534 DYLATVMPDSGNKSVLIHQLSKRKSQ-------SP------FRKSKGLVQRVKFHPSKPYLFVATQRSV------RIYDL  594 (733)
T ss_pred             ceEEEeccCCCcceEEEEeccccccc-------Cc------hhhcCCceeEEEecCCCceEEEEeccce------EEEeh
Confidence            68887654    35999987644211       11      000000112244555  23333322110      00000


Q ss_pred             CCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255          277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF  356 (765)
Q Consensus       277 lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl  356 (765)
                      .                    ..+..|.+..|. |-++             .++..+.+.    .+.-++.|+.+..+|+
T Consensus       595 ~--------------------kqelvKkL~tg~-kwiS-------------~msihp~GD----nli~gs~d~k~~WfDl  636 (733)
T KOG0650|consen  595 S--------------------KQELVKKLLTGS-KWIS-------------SMSIHPNGD----NLILGSYDKKMCWFDL  636 (733)
T ss_pred             h--------------------HHHHHHHHhcCC-eeee-------------eeeecCCCC----eEEEecCCCeeEEEEc
Confidence            0                    001123333332 1111             111111111    1335678999999999


Q ss_pred             CCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc--CCcceEEEEEeccccc--
Q 004255          357 VTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW--NSSHVHLYKLHRGITS--  431 (765)
Q Consensus       357 ~s~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~--~~s~~~l~~l~rG~~~--  431 (765)
                      .-. ++..+++-|...|.+++|++.=.++|+||.||+ +.||--+-          ..|+  ..-...+..|+ |+..  
T Consensus       637 dlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~V----------Y~Dl~qnpliVPlK~L~-gH~~~~  704 (733)
T KOG0650|consen  637 DLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMV----------YNDLLQNPLIVPLKRLR-GHEKTN  704 (733)
T ss_pred             ccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEeeee----------ehhhhcCCceEeeeecc-Cceeec
Confidence            754 577889999999999999999999999999876 66774321          1111  11124555553 4432  


Q ss_pred             -ccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255          432 -ATIQDICFSHYSQWIAIVSSKGTCHVF  458 (765)
Q Consensus       432 -a~I~slaFSpDg~~Las~S~dgTVhIw  458 (765)
                       --|.++.|+|.--||.+++.||||++|
T Consensus       705 ~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  705 DLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ccceEeecccCCCceEEecCCCceEEee
Confidence             138899999999999999999999998

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.02  E-value=6.3e-09  Score=117.45  Aligned_cols=113  Identities=14%  Similarity=0.155  Sum_probs=74.2

Q ss_pred             CCCCeEEEEECCCCcEEE--------EeccC---CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255          346 DNAGIVVVKDFVTRAIIS--------QFKAH---TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD  414 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~--------~~~aH---~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~  414 (765)
                      ..|+.|+|||+.......        .+.-|   .-.+.+|..+..|++|.....|+ .|..|++..+..          
T Consensus       237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~-sIy~ynm~s~s~----------  305 (720)
T KOG0321|consen  237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN-SIYFYNMRSLSI----------  305 (720)
T ss_pred             CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC-cEEEEeccccCc----------
Confidence            359999999998653221        22233   33688999999999886666655 599999865310          


Q ss_pred             cCCcceEEEEEecccccccE-EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcc-cccccCC
Q 004255          415 WNSSHVHLYKLHRGITSATI-QDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLSSQ  475 (765)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I-~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~-~~~h~~~  475 (765)
                           ..+..+ .|..+..+ ..-..|||+.+|++++.|+.+.+|.++.....+. +.+|+..
T Consensus       306 -----sP~~~~-sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e  362 (720)
T KOG0321|consen  306 -----SPVAEF-SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE  362 (720)
T ss_pred             -----Cchhhc-cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE
Confidence                 111111 12111111 1234799999999999999999999988766554 4567543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=1.6e-07  Score=106.84  Aligned_cols=213  Identities=17%  Similarity=0.130  Sum_probs=126.8

Q ss_pred             cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCC
Q 004255           85 GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQ  164 (765)
Q Consensus        85 G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~  164 (765)
                      .+.|||.+ ..+.+. +-.+.+.+...+++|+.             ..||.+..+.                        
T Consensus       180 ~l~~~d~d-g~~~~~-lt~~~~~~~~p~wSPDG-------------~~la~~s~~~------------------------  220 (429)
T PRK03629        180 ELRVSDYD-GYNQFV-VHRSPQPLMSPAWSPDG-------------SKLAYVTFES------------------------  220 (429)
T ss_pred             eEEEEcCC-CCCCEE-eecCCCceeeeEEcCCC-------------CEEEEEEecC------------------------
Confidence            37777764 334444 44456789999999862             2566544211                        


Q ss_pred             CCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe--CC--eEEEEECCCCceeEEEEecCCcccCCC
Q 004255          165 SGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLENKFSVLTYPVPQLAGQ  238 (765)
Q Consensus       165 ~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~--~~--~I~iwD~~t~~~l~tl~t~p~p~~~~~  238 (765)
                            ....|.+||+.+|+......++..+.+++++|  +.|+...  ++  +|++||+.+++.. .+.....      
T Consensus       221 ------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~------  287 (429)
T PRK03629        221 ------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRS------  287 (429)
T ss_pred             ------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCC------
Confidence                  01479999999997665555666666788887  5666542  22  5999999887643 2221111      


Q ss_pred             CccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccc
Q 004255          239 GAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY  316 (765)
Q Consensus       239 ~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~  316 (765)
                             .....+++|  ++|+|.++..                                                    
T Consensus       288 -------~~~~~~wSPDG~~I~f~s~~~----------------------------------------------------  308 (429)
T PRK03629        288 -------NNTEPTWFPDSQNLAYTSDQA----------------------------------------------------  308 (429)
T ss_pred             -------CcCceEECCCCCEEEEEeCCC----------------------------------------------------
Confidence                   012345555  5555554210                                                    


Q ss_pred             ccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEE
Q 004255          317 CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNI  394 (765)
Q Consensus       317 ~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--t~I  394 (765)
                                                    ..-.|.++|+.+++. ..+..+.......+|+|||++|+..+.++  ..|
T Consensus       309 ------------------------------g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I  357 (429)
T PRK03629        309 ------------------------------GRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI  357 (429)
T ss_pred             ------------------------------CCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceE
Confidence                                          001344456655543 33333444556789999999998877543  347


Q ss_pred             EEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCc---EEEEeC
Q 004255          395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGT---CHVFVL  460 (765)
Q Consensus       395 rVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgT---VhIwdl  460 (765)
                      .+||+..       |           ....+..+.   ...+.+|||||++|+.++.++.   +.++++
T Consensus       358 ~~~dl~~-------g-----------~~~~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        358 AKQDLAT-------G-----------GVQVLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             EEEECCC-------C-----------CeEEeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence            7788754       2           122333221   2346889999999999998876   445555

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=98.98  E-value=4.2e-08  Score=105.31  Aligned_cols=112  Identities=16%  Similarity=0.311  Sum_probs=71.6

Q ss_pred             cccCCCCeEEEEECCC---CcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCC--CccccC
Q 004255          343 ADMDNAGIVVVKDFVT---RAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGN--HKYDWN  416 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s---~~~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~--~~~~~~  416 (765)
                      ++++.+|+++|||++.   ++++++|+-|..||++|.|+|. ...||.++. +..|.|||+.........+.  .....+
T Consensus       318 asG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~-D~QitiWDlsvE~D~ee~~~~a~~~L~d  396 (440)
T KOG0302|consen  318 ASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE-DNQITIWDLSVEADEEEIDQEAAEGLQD  396 (440)
T ss_pred             eecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC-CCcEEEEEeeccCChhhhccccccchhc
Confidence            4677899999999875   5789999999999999999994 344555555 45699999965321000000  000000


Q ss_pred             CcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEe
Q 004255          417 SSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFV  459 (765)
Q Consensus       417 ~s~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwd  459 (765)
                      --.+.|+ .+.|.  ..|-.+.|++.- .+|++.+.||. .||.
T Consensus       397 lPpQLLF-VHqGQ--ke~KevhWH~QiPG~lvsTa~dGf-nVfk  436 (440)
T KOG0302|consen  397 LPPQLLF-VHQGQ--KEVKEVHWHRQIPGLLVSTAIDGF-NVFK  436 (440)
T ss_pred             CCceeEE-Eecch--hHhhhheeccCCCCeEEEecccce-eEEE
Confidence            0112333 33343  358889999875 57888888884 4553

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=8.6e-09  Score=109.43  Aligned_cols=186  Identities=17%  Similarity=0.196  Sum_probs=124.5

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CCEEEEEe----cCCeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRC----SPRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~----s~~~LaV-~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~  246 (765)
                      +.|++||..||+.+..++.+ ..+-.|+|    ++..|.+ +.++.|++||+++......+..-..|     +     .+
T Consensus        50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-----~-----~~  119 (376)
T KOG1188|consen   50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-----G-----TP  119 (376)
T ss_pred             CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-----C-----Cc
Confidence            68999999999999999875 34444444    4455554 55779999999987665555421111     0     01


Q ss_pred             cceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255          247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (765)
Q Consensus       247 ~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~  324 (765)
                      +.+++++.  +.+|.+...                                                             
T Consensus       120 f~~ld~nck~~ii~~GtE~-------------------------------------------------------------  138 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTEL-------------------------------------------------------------  138 (376)
T ss_pred             ceEeeccCcCCeEEecccc-------------------------------------------------------------
Confidence            23344432  233332210                                                             


Q ss_pred             CCCCccCCCccccccccccccCCCCeEEEEECCCCcE-EEE-eccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCC
Q 004255          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQ-FKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~-i~~-~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~  401 (765)
                                          ...+-.|.+||++..+. +.. +..|..-|++|+|+| +-++|+|||.|| .|+|||++-
T Consensus       139 --------------------~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~  197 (376)
T KOG1188|consen  139 --------------------TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKK  197 (376)
T ss_pred             --------------------ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeecCC
Confidence                                01244789999988654 444 468999999999999 567999999976 699999964


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCC
Q 004255          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      ..   .          ....+..+.   +...|-++.|..++ +.|.+-+..+|..+|+++....+
T Consensus       198 d~---E----------eDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  198 DN---E----------EDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             Cc---c----------hhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence            20   0          002223332   22459999999888 55889999999999999986543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.97  E-value=8.2e-09  Score=106.39  Aligned_cols=69  Identities=23%  Similarity=0.297  Sum_probs=54.7

Q ss_pred             eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 004255          372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS  451 (765)
Q Consensus       372 IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~  451 (765)
                      |+.+..-||++.||||+.|+. ||||..++       +          ..|..|..  |.+.|.+++||||...+|++|.
T Consensus       254 v~gvrIRpD~KIlATAGWD~R-iRVyswrt-------l----------~pLAVLky--Hsagvn~vAfspd~~lmAaask  313 (323)
T KOG0322|consen  254 VSGVRIRPDGKILATAGWDHR-IRVYSWRT-------L----------NPLAVLKY--HSAGVNAVAFSPDCELMAAASK  313 (323)
T ss_pred             ccceEEccCCcEEeecccCCc-EEEEEecc-------C----------Cchhhhhh--hhcceeEEEeCCCCchhhhccC
Confidence            344556688899999999776 89998765       2          35555542  4467999999999999999999


Q ss_pred             CCcEEEEeC
Q 004255          452 KGTCHVFVL  460 (765)
Q Consensus       452 dgTVhIwdl  460 (765)
                      |++|-+|++
T Consensus       314 D~rISLWkL  322 (323)
T KOG0322|consen  314 DARISLWKL  322 (323)
T ss_pred             CceEEeeec
Confidence            999999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=6e-07  Score=102.19  Aligned_cols=204  Identities=15%  Similarity=0.154  Sum_probs=123.6

Q ss_pred             EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 004255           86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS  165 (765)
Q Consensus        86 ~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~  165 (765)
                      +.+||.  .+.-.+.+..+.++|...++.|+.             ..|+.+....                         
T Consensus       184 l~~~d~--dg~~~~~lt~~~~~v~~p~wSpDG-------------~~lay~s~~~-------------------------  223 (435)
T PRK05137        184 LAIMDQ--DGANVRYLTDGSSLVLTPRFSPNR-------------QEITYMSYAN-------------------------  223 (435)
T ss_pred             EEEECC--CCCCcEEEecCCCCeEeeEECCCC-------------CEEEEEEecC-------------------------
Confidence            555555  344445566777899999999862             2556544211                         


Q ss_pred             CCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeC----CeEEEEECCCCceeEEEEecCCcccCCCC
Q 004255          166 GNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLENKFSVLTYPVPQLAGQG  239 (765)
Q Consensus       166 ~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~----~~I~iwD~~t~~~l~tl~t~p~p~~~~~~  239 (765)
                           ....|.+||+.+|+......+...+.+.+++|  +.|+....    ..|++||+.+++. ..|..++..      
T Consensus       224 -----g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~------  291 (435)
T PRK05137        224 -----GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAI------  291 (435)
T ss_pred             -----CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCc------
Confidence                 02479999999988755445677778888887  56654432    2599999988764 333222210      


Q ss_pred             ccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccc
Q 004255          240 AVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC  317 (765)
Q Consensus       240 ~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~  317 (765)
                             ....+++|  ++|+|.++.                                                      
T Consensus       292 -------~~~~~~spDG~~i~f~s~~------------------------------------------------------  310 (435)
T PRK05137        292 -------DTSPSYSPDGSQIVFESDR------------------------------------------------------  310 (435)
T ss_pred             -------cCceeEcCCCCEEEEEECC------------------------------------------------------
Confidence                   12234554  455554321                                                      


Q ss_pred             cccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEE
Q 004255          318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNIN  395 (765)
Q Consensus       318 ~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--t~Ir  395 (765)
                                                  .....|.++|+.+++. ..+..+...+...+|+|||++||..+.++  ..|.
T Consensus       311 ----------------------------~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~  361 (435)
T PRK05137        311 ----------------------------SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIG  361 (435)
T ss_pred             ----------------------------CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEE
Confidence                                        0012577778776554 33433445567789999999999877543  3567


Q ss_pred             EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 004255          396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK  452 (765)
Q Consensus       396 VWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d  452 (765)
                      +||+..       +           ....+..+   ..+.+.+|||||++|+..+.+
T Consensus       362 ~~d~~~-------~-----------~~~~lt~~---~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        362 VMKPDG-------S-----------GERILTSG---FLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             EEECCC-------C-----------ceEeccCC---CCCCCCeECCCCCEEEEEEcc
Confidence            777632       1           11223222   236778999999999887654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.95  E-value=4.8e-08  Score=111.36  Aligned_cols=252  Identities=14%  Similarity=0.134  Sum_probs=147.5

Q ss_pred             CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (765)
Q Consensus        75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~  154 (765)
                      +..++-|....|+|||-... .....+.+|.++|.|+.++|.-.       +   -+.+  |+|+               
T Consensus        25 ~~~vafGa~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~-------~---~a~~--vsG~---------------   76 (764)
T KOG1063|consen   25 GGLVAFGAGPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSE-------I---VAEM--VSGD---------------   76 (764)
T ss_pred             cceEEecCCceEEEeCcccc-eeEEeccCCccceEEEEEccccc-------c---cceE--EEcc---------------
Confidence            55788888888999998654 35567889999999999998521       1   1233  3342               


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CCEEEEEecCCeEEE-EeCCeEEEEECCCCc--eeEEEE
Q 004255          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSPRIVAV-GLATQIYCFDALTLE--NKFSVL  228 (765)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~~~LaV-~~~~~I~iwD~~t~~--~l~tl~  228 (765)
                                      ++++|++|-++....++.+.+.   ..+.+|...+....+ +.++.+++||...-+  ++..+.
T Consensus        77 ----------------sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~r  140 (764)
T KOG1063|consen   77 ----------------SDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLR  140 (764)
T ss_pred             ----------------CCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehhee
Confidence                            2579999999855555544433   245555555544444 567789999985443  222221


Q ss_pred             ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255          229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (765)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G  308 (765)
                      - ....            .-++.|     +...++                           +++               
T Consensus       141 f-~~k~------------~ipLcL-----~~~~~~---------------------------~~~---------------  160 (764)
T KOG1063|consen  141 F-EIKE------------AIPLCL-----AALKNN---------------------------KTF---------------  160 (764)
T ss_pred             h-hhhh------------HhhHHH-----hhhccC---------------------------CcE---------------
Confidence            0 0000            000000     000000                           000               


Q ss_pred             cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC--CCcEEEEeccCCCCeEEEEECCCCC---E
Q 004255          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV--TRAIISQFKAHTSPISALCFDPSGT---L  383 (765)
Q Consensus       309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~--s~~~i~~~~aH~~~IsaLaFSpdG~---l  383 (765)
                                                      .++-++.+..|.|+--.  .-+.+..+++|+..|..|+|...|.   +
T Consensus       161 --------------------------------lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~  208 (764)
T KOG1063|consen  161 --------------------------------LLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLL  208 (764)
T ss_pred             --------------------------------EEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEE
Confidence                                            00111222233333222  2356788999999999999998655   7


Q ss_pred             EEEEEcCCCEEEEEeCCCCcccC-CCC----CCccccCCcceEEEEE---------ecccccccEEEEEEccCCCEEEEE
Q 004255          384 LVTASVYGNNINIFRIMPSCMRS-GSG----NHKYDWNSSHVHLYKL---------HRGITSATIQDICFSHYSQWIAIV  449 (765)
Q Consensus       384 LATaS~dGt~IrVWdi~~~~~~~-~sG----~~~~~~~~s~~~l~~l---------~rG~~~a~I~slaFSpDg~~Las~  449 (765)
                      |||+|. |+.||||.+...-..+ ...    +.-++ ......+.++         .-|+ ...|+++.|+|++..|.++
T Consensus       209 laS~SQ-D~yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~i~~~is~eall~GH-eDWV~sv~W~p~~~~LLSA  285 (764)
T KOG1063|consen  209 LASSSQ-DRYIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEEIQYRISFEALLMGH-EDWVYSVWWHPEGLDLLSA  285 (764)
T ss_pred             EEecCC-ceEEEEEEEEecCCccccccccccccccC-CceeeeeeeEEEEEehhhhhcCc-ccceEEEEEccchhhheec
Confidence            888888 6789999986521000 000    00000 0111122122         2354 3579999999999999999


Q ss_pred             eCCCcEEEEeCCCCCC
Q 004255          450 SSKGTCHVFVLSPFGG  465 (765)
Q Consensus       450 S~dgTVhIwdl~~~gg  465 (765)
                      |.|.|+.||.-....|
T Consensus       286 SaDksmiiW~pd~~tG  301 (764)
T KOG1063|consen  286 SADKSMIIWKPDENTG  301 (764)
T ss_pred             ccCcceEEEecCCccc
Confidence            9999999998776533

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.93  E-value=2.9e-09  Score=122.74  Aligned_cols=279  Identities=17%  Similarity=0.198  Sum_probs=176.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      .-+|..-|.+|-||+       .++.+++||++- ++||..+ ++.+...+.+|.|.++.+++.             .++
T Consensus       186 LlgH~naVyca~fDr-------tg~~Iitgsdd~lvKiwS~e-t~~~lAs~rGhs~ditdlavs-------------~~n  244 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDR-------TGRYIITGSDDRLVKIWSME-TARCLASCRGHSGDITDLAVS-------------SNN  244 (1113)
T ss_pred             HHhhhhheeeeeecc-------ccceEeecCccceeeeeecc-chhhhccCCCCccccchhccc-------------hhh
Confidence            556788899999998       367899999997 7999974 577888889999999998876             222


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEe
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL  209 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~  209 (765)
                      -++|..+                                 .+..|++|-+.++..|..|..+ +.|.+|+|+|+. +.+.
T Consensus       245 ~~iaaaS---------------------------------~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~  290 (1113)
T KOG0644|consen  245 TMIAAAS---------------------------------NDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSD  290 (1113)
T ss_pred             hhhhhcc---------------------------------cCceEEEEecCCCchHHHHhccccceeeeccCccc-cCCC
Confidence            3443311                                 2478999999999999999865 699999999976 5666


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCC
Q 004255          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG  289 (765)
Q Consensus       210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~  289 (765)
                      ++++.+||+. ++   .+...|.|-.    +.... -..++-+-..|.++....        .                 
T Consensus       291 dgt~~~wd~r-~~---~~~y~prp~~----~~~~~-~~~s~~~~~~~~~f~Tgs--------~-----------------  336 (1113)
T KOG0644|consen  291 DGTCRIWDAR-LE---PRIYVPRPLK----FTEKD-LVDSILFENNGDRFLTGS--------R-----------------  336 (1113)
T ss_pred             CCceEecccc-cc---ccccCCCCCC----ccccc-ceeeeecccccccccccc--------C-----------------
Confidence            7899999987 22   2222333310    00000 001111111222222110        0                 


Q ss_pred             CCcceeeehhhhhhhhhccccee-ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 004255          290 GSSLVARYAMEHSKQFAAGLSKT-LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH  368 (765)
Q Consensus       290 ~gslva~~a~d~~k~la~G~~kt-ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH  368 (765)
                        +..++     ..++..-..+. +-.|.    ...+        +  ... -..++-.+-.+.+|++.++...+.+.+|
T Consensus       337 --d~ea~-----n~e~~~l~~~~~~lif~----t~ss--------d--~~~-~~~~ar~~~~~~vwnl~~g~l~H~l~gh  394 (1113)
T KOG0644|consen  337 --DGEAR-----NHEFEQLAWRSNLLIFV----TRSS--------D--LSS-IVVTARNDHRLCVWNLYTGQLLHNLMGH  394 (1113)
T ss_pred             --Ccccc-----cchhhHhhhhccceEEE----eccc--------c--ccc-cceeeeeeeEeeeeecccchhhhhhccc
Confidence              00000     00000000000 00000    0000        0  000 0113345678889999999999999999


Q ss_pred             CCCeEEEEECCCCCEE-EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 004255          369 TSPISALCFDPSGTLL-VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA  447 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lL-ATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La  447 (765)
                      ..++..|.|+|-...+ .+|+.||+ +-|||+..       |        ...+.|.  .|  ...+.+.+||+||+.++
T Consensus       395 sd~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~e-------g--------~pik~y~--~g--h~kl~d~kFSqdgts~~  454 (1113)
T KOG0644|consen  395 SDEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWE-------G--------IPIKHYF--IG--HGKLVDGKFSQDGTSIA  454 (1113)
T ss_pred             ccceeeeeecCCCcHhhhhccCCCc-eEeeeccc-------C--------Ccceeee--cc--cceeeccccCCCCceEe
Confidence            9999999999966554 57888776 67999943       3        2234444  34  24578899999999999


Q ss_pred             EEeCCCcEEEEeCC
Q 004255          448 IVSSKGTCHVFVLS  461 (765)
Q Consensus       448 s~S~dgTVhIwdl~  461 (765)
                      ...+-|.+.|+...
T Consensus       455 lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  455 LSDDHGQLYILGTG  468 (1113)
T ss_pred             cCCCCCceEEeccC
Confidence            99999998887654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.92  E-value=1.4e-06  Score=92.13  Aligned_cols=223  Identities=17%  Similarity=0.228  Sum_probs=148.0

Q ss_pred             EecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccC
Q 004255           81 GYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDG  159 (765)
Q Consensus        81 G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g  159 (765)
                      +..+ .+++||+.........+..|...|..+.+.|+.             ..+++  +..                   
T Consensus       130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~~--~~~-------------------  175 (466)
T COG2319         130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-------------KLLAS--GSS-------------------  175 (466)
T ss_pred             CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-------------CEEEe--cCC-------------------
Confidence            4424 499999964245667788888899999988742             13433  210                   


Q ss_pred             CcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecCC---eEEE-EeCCeEEEEECCCCceeE-EEEecCCc
Q 004255          160 MMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR---IVAV-GLATQIYCFDALTLENKF-SVLTYPVP  233 (765)
Q Consensus       160 ~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~~---~LaV-~~~~~I~iwD~~t~~~l~-tl~t~p~p  233 (765)
                                 .++.+++|++.++..+..+.. ...|..+++++.   +++. +.++.|++||..+++... .+..|...
T Consensus       176 -----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  244 (466)
T COG2319         176 -----------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS  244 (466)
T ss_pred             -----------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence                       136899999999999999986 468999998873   3444 456679999888666555 23333321


Q ss_pred             ccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceee
Q 004255          234 QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL  313 (765)
Q Consensus       234 ~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktl  313 (765)
                                    ....+++                                  .+ .                     
T Consensus       245 --------------~~~~~~~----------------------------------~~-~---------------------  254 (466)
T COG2319         245 --------------VVSSFSP----------------------------------DG-S---------------------  254 (466)
T ss_pred             --------------eeEeECC----------------------------------CC-C---------------------
Confidence                          0001111                                  00 0                     


Q ss_pred             cccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 004255          314 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSGTLLVTASVYGN  392 (765)
Q Consensus       314 s~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~-i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt  392 (765)
                                                 ....+..++.+++||+..... +..+..|..+|.++.|+|++..+++++.| .
T Consensus       255 ---------------------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~  306 (466)
T COG2319         255 ---------------------------LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD-G  306 (466)
T ss_pred             ---------------------------EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC-C
Confidence                                       001235688999999987664 55557899999999999999999998887 5


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCC
Q 004255          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG  464 (765)
Q Consensus       393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-rG~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl~~~g  464 (765)
                      .+++||+...                 ....... .++ ...|..+.|++++..++.+ ..|+.+.+|++....
T Consensus       307 ~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         307 TVRLWDLETG-----------------KLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             cEEEEEcCCC-----------------ceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            5999987541                 1222221 222 2358899995443566666 688999999998754

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.92  E-value=1.1e-06  Score=94.51  Aligned_cols=194  Identities=19%  Similarity=0.287  Sum_probs=126.9

Q ss_pred             EEEEEECCCCeEEEEEeCC----CCEEEEEecCC--eEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccc
Q 004255          174 AVRFYSFQSHCYEHVLRFR----SSVCMVRCSPR--IVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN  244 (765)
Q Consensus       174 tV~lWdlktg~~v~tL~~~----s~V~sV~~s~~--~LaV~~---~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~  244 (765)
                      .|.|||+++-+++|+++-.    ..+.++.+|..  +||.=.   .+.|++||+.+++..-+|..|..+           
T Consensus       107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~-----------  175 (391)
T KOG2110|consen  107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP-----------  175 (391)
T ss_pred             cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc-----------
Confidence            5999999999999999743    25777777773  787522   346999999999988888887663           


Q ss_pred             cccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255          245 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (765)
Q Consensus       245 ~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p  322 (765)
                        ...+||++  .+||.+++                                                            
T Consensus       176 --lAalafs~~G~llATASe------------------------------------------------------------  193 (391)
T KOG2110|consen  176 --LAALAFSPDGTLLATASE------------------------------------------------------------  193 (391)
T ss_pred             --eeEEEECCCCCEEEEecc------------------------------------------------------------
Confidence              24566655  45555543                                                            


Q ss_pred             CCCCCCccCCCccccccccccccCCCC-eEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          323 DGSSSPVSPNSVWKVGRHAGADMDNAG-IVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG-~V~IwDl~s~~~i~~~~aH~--~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                                               .| .|||+++.+|+.+.+|+.-.  ..|.+|+|+||+++|+..|..++ |+||.+
T Consensus       194 -------------------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL  247 (391)
T KOG2110|consen  194 -------------------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKL  247 (391)
T ss_pred             -------------------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEe
Confidence                                     23 47899999999999997543  35789999999999998888665 999998


Q ss_pred             CCCccc-CC---CCCCcc-cc--------CCcceEEEEEecc------cccccEEEEEEc--cCCCEEEEEeCCCcEEEE
Q 004255          400 MPSCMR-SG---SGNHKY-DW--------NSSHVHLYKLHRG------ITSATIQDICFS--HYSQWIAIVSSKGTCHVF  458 (765)
Q Consensus       400 ~~~~~~-~~---sG~~~~-~~--------~~s~~~l~~l~rG------~~~a~I~slaFS--pDg~~Las~S~dgTVhIw  458 (765)
                      ...... ..   .+.... .+        ...........|.      .....=..++|+  ++..++.+++.||++..|
T Consensus       248 ~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y  327 (391)
T KOG2110|consen  248 EKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSY  327 (391)
T ss_pred             cccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEE
Confidence            653210 00   000000 00        0000001111111      001101234455  577899999999999999


Q ss_pred             eCCCC-CCC
Q 004255          459 VLSPF-GGD  466 (765)
Q Consensus       459 dl~~~-gg~  466 (765)
                      .+++. ||+
T Consensus       328 ~l~~~~gGe  336 (391)
T KOG2110|consen  328 RLPPKEGGE  336 (391)
T ss_pred             EcCCCCCce
Confidence            99985 444

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=2.9e-09  Score=126.87  Aligned_cols=101  Identities=17%  Similarity=0.186  Sum_probs=78.6

Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCC--CeEEEEECCCC-CEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCc
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTS--PISALCFDPSG-TLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSS  418 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~--~IsaLaFSpdG-~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s  418 (765)
                      ++..+|.+.|||++..+.+..|.-|..  .++.|+|+|++ +.|++|+.|++  +|.+||++..              . 
T Consensus       179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a--------------s-  243 (1049)
T KOG0307|consen  179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA--------------S-  243 (1049)
T ss_pred             ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc--------------C-
Confidence            445678999999999988888876644  47899999974 57888888765  7999998642              0 


Q ss_pred             ceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCC
Q 004255          419 HVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~  462 (765)
                       ..+.++ +||.. -|.+++|++.+ ++|++++.|+.|.+|+.++
T Consensus       244 -sP~k~~-~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  244 -SPLKIL-EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             -Cchhhh-ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence             233444 34443 48999999876 9999999999999999987

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.91  E-value=4.2e-08  Score=107.17  Aligned_cols=129  Identities=19%  Similarity=0.289  Sum_probs=100.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      .++|+|-|+...|+++      .++||++|+.+ .+++||++ .+++..++..|.+.|..++|-|.          .   
T Consensus       239 ~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~-~g~p~~s~~~~~k~Vq~l~wh~~----------~---  298 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVD-TGKPKSSITHHGKKVQTLEWHPY----------E---  298 (463)
T ss_pred             cccchHHHHHHHhccc------cceeEEecCCCceEEEEEcC-CCCcceehhhcCCceeEEEecCC----------C---
Confidence            4568888888888875      47899999987 59999994 79999999999999999999873          2   


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCCEEEEEecC---CeEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLRFRSSVCMVRCSP---RIVA  206 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt-g~~v~tL~~~s~V~sV~~s~---~~La  206 (765)
                      |.+++ +|.                               .+++|.+.|.+. ++.-..++|.+.|-.|+.++   ..+.
T Consensus       299 p~~LL-sGs-------------------------------~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~  346 (463)
T KOG0270|consen  299 PSVLL-SGS-------------------------------YDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF  346 (463)
T ss_pred             ceEEE-ecc-------------------------------ccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence            33333 221                               257999999984 44556778999999999876   4555


Q ss_pred             EEe-CCeEEEEECCCC-ceeEEEEecCC
Q 004255          207 VGL-ATQIYCFDALTL-ENKFSVLTYPV  232 (765)
Q Consensus       207 V~~-~~~I~iwD~~t~-~~l~tl~t~p~  232 (765)
                      ++. ++.+|-||++.. ++++++..|..
T Consensus       347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~  374 (463)
T KOG0270|consen  347 VSTDDGTVYYFDIRNPGKPVWTLKAHDD  374 (463)
T ss_pred             EecCCceEEeeecCCCCCceeEEEeccC
Confidence            555 568999999876 78899888765

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=1.3e-09  Score=123.42  Aligned_cols=315  Identities=24%  Similarity=0.314  Sum_probs=185.7

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .+.++++||-.| .++|-..-.+.+.+.+.++.|+|..+.++++-              ++.+                 
T Consensus       251 kGy~~isglc~g~~~~g~gpglgg~~~~~vGrvg~vsaesV~g~~--------------~viv-----------------  299 (788)
T KOG2109|consen  251 KGYVLISGLCRGSYQIGTGPGLGGFEEVLVGRVGPVSAESVLGNN--------------LVIV-----------------  299 (788)
T ss_pred             chHHHHHHHhhcccCCCCCCCCCCcCceeccccccccceeecccc--------------eEEe-----------------
Confidence            467888999888 89999877788889999999999999988631              3222                 


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEe-cC
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YP  231 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~~~~I~iwD~~t~~~l~tl~t-~p  231 (765)
                                            ..|=+++....++..+++..+++++-++.+|++++-..+.|++.+.++..-++.. .+
T Consensus       300 ----------------------kdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~q  357 (788)
T KOG2109|consen  300 ----------------------KDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQ  357 (788)
T ss_pred             ----------------------ecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEecccccccccccc
Confidence                                  1123444556666667777777777777888888776666666666665444432 22


Q ss_pred             CcccCCCCccccccccceeEEccceEEEecCC---ceecCCccc--cCCCCCCCC-C----CCC---cCCCCCcceeeeh
Q 004255          232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNT---LLLSNSGRL--SPQNLTPSG-V----SPS---TSPGGSSLVARYA  298 (765)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~---~~~~~~G~~--s~~~lt~~~-~----s~s---~sp~~gslva~~a  298 (765)
                      .+.            ..+.++.++||++..-.   .+.. .|-+  ..-.+++.. +    ..+   +..+.+-+++   
T Consensus       358 s~~------------~s~ra~t~aviqdicfs~~s~~r~-~gsc~Ge~P~ls~t~~lp~~A~~Sl~~gl~s~g~~aa---  421 (788)
T KOG2109|consen  358 SLV------------VSPRANTAAVIQDICFSEVSTIRT-AGSCEGEPPALSLTCQLPAYADTSLDLGLQSSGGLAA---  421 (788)
T ss_pred             ccc------------cchhcchHHHHHHHhhhhhcceEe-ecccCCCCcccccccccchhhchhhhccccccCcccc---
Confidence            210            12345555444432111   0000 0000  000000000 0    000   0011111111   


Q ss_pred             hhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccc-cc-cccCCCCeEEEEEC-----CCC-cEEEEeccCCC
Q 004255          299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH-AG-ADMDNAGIVVVKDF-----VTR-AIISQFKAHTS  370 (765)
Q Consensus       299 ~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~-~~-~~~~~dG~V~IwDl-----~s~-~~i~~~~aH~~  370 (765)
                              .|+.-+-.+|++..+..++....+.-++.+..+. .+ ..-...|.+.+.+.     ..+ .+++.+-+|..
T Consensus       422 --------~gla~~sag~~a~s~~asSv~s~s~~pd~ks~gv~~gsv~k~~q~~~~~l~~llv~~psGd~vvqh~vahs~  493 (788)
T KOG2109|consen  422 --------EGLATSSAGYTAHSYTASSVFSRSVKPDSKSVGVGSGSVTKANQGVITVLNLLLVGEPSGDGVVQHYVAHSD  493 (788)
T ss_pred             --------eeeeeccccccccccccceeeccccccchhhccceeeeccccCccchhhhhheeeecCCCCceeEEEeeccC
Confidence                    1111111233333221111111111112221111 00 01111233333322     123 46677889999


Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S  450 (765)
                      ++..+.|+++++++.|++..++.+.+|-++|+...+.        -....++|++.||.+.+.|..++|+-|++|+|...
T Consensus       494 ~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wss--------laav~hly~l~rG~TsaKv~~~afs~dsrw~A~~t  565 (788)
T KOG2109|consen  494 PGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSS--------LAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAITT  565 (788)
T ss_pred             ccceeeecccccceecccccccccceEEeecccccHH--------HhhhhhhhhccCCCccceeeeeEeecchhhhhhhh
Confidence            9999999999999999999888879999988643211        12346899999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCccccccc
Q 004255          451 SKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       451 ~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      ..+|-|||.+.+|++....++|.
T Consensus       566 ~~~TthVfk~hpYgg~aeqrth~  588 (788)
T KOG2109|consen  566 NHATTHVFKVHPYGGKAEQRTHG  588 (788)
T ss_pred             cCCceeeeeeccccccccceecC
Confidence            99999999999999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.90  E-value=3.5e-08  Score=108.65  Aligned_cols=207  Identities=14%  Similarity=0.274  Sum_probs=140.7

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      ...++.|..+| ++|||+. ..-+++-+..|...|.+|.+.-+           +  -.||.|.-+              
T Consensus        91 S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~-----------D--eyiAsvs~g--------------  142 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNT-----------D--EYIASVSDG--------------  142 (673)
T ss_pred             ceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCC-----------c--ceeEEeccC--------------
Confidence            45666777666 8999996 56688888899999999987632           2  267765421              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC--CEEEEEecC--C-eEEE-EeCCeEEEEECCCCceeEEE
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--R-IVAV-GLATQIYCFDALTLENKFSV  227 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s--~V~sV~~s~--~-~LaV-~~~~~I~iwD~~t~~~l~tl  227 (765)
                                         +-|.|-+++++..-.+|..++  .|.-+++++  + +|.+ +.++.|++||+..+...+..
T Consensus       143 -------------------Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~  203 (673)
T KOG4378|consen  143 -------------------GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA  203 (673)
T ss_pred             -------------------CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence                               358899999998888888763  667888876  4 4444 44567999999877655544


Q ss_pred             E-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhh
Q 004255          228 L-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA  306 (765)
Q Consensus       228 ~-t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la  306 (765)
                      . .|..|.             .-+.|+|                                  ++--+             
T Consensus       204 ~~~HsAP~-------------~gicfsp----------------------------------sne~l-------------  223 (673)
T KOG4378|consen  204 SEAHSAPC-------------RGICFSP----------------------------------SNEAL-------------  223 (673)
T ss_pred             hhhccCCc-------------CcceecC----------------------------------Cccce-------------
Confidence            3 243331             0012221                                  11111             


Q ss_pred             cccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 004255          307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT  386 (765)
Q Consensus       307 ~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLAT  386 (765)
                                                         +++.+.|..|.+||..+.+....|.. ..|.++++|+++|.+|+.
T Consensus       224 -----------------------------------~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~a  267 (673)
T KOG4378|consen  224 -----------------------------------LVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCA  267 (673)
T ss_pred             -----------------------------------EEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEe
Confidence                                               12335688999999998776666543 469999999999999999


Q ss_pred             EEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255          387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (765)
Q Consensus       387 aS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (765)
                      |+..|. |.-||++..                ..++..+.  .+.+.|++|+|-|--
T Consensus       268 G~s~G~-~i~YD~R~~----------------k~Pv~v~s--ah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  268 GNSKGE-LIAYDMRST----------------KAPVAVRS--AHDASVTRVAFQPSP  305 (673)
T ss_pred             ecCCce-EEEEecccC----------------CCCceEee--ecccceeEEEeeecc
Confidence            999887 778999531                12444433  234569999998754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=5.5e-09  Score=109.80  Aligned_cols=129  Identities=21%  Similarity=0.278  Sum_probs=86.5

Q ss_pred             ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC----
Q 004255          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS----  417 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~----  417 (765)
                      ++.|..+|.|.|||+.+..+-..|.+|..||.+|+||+||++|+|+|. +..|.+||+........-.-.+..|..    
T Consensus        38 lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-D~si~lwDl~~gs~l~rirf~spv~~~q~hp  116 (405)
T KOG1273|consen   38 LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHP  116 (405)
T ss_pred             eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-CceeEEEeccCCCceeEEEccCccceeeecc
Confidence            456889999999999999988999999999999999999999999999 567999999652100000000000100    


Q ss_pred             cc--eE----------EEEEecccc-----------cccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccc
Q 004255          418 SH--VH----------LYKLHRGIT-----------SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT  471 (765)
Q Consensus       418 s~--~~----------l~~l~rG~~-----------~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~  471 (765)
                      ..  ..          +..+.-+.+           +..-.+..|.+-|++|.+|+.+|.++|++..+..+...++.
T Consensus       117 ~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri  193 (405)
T KOG1273|consen  117 RKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI  193 (405)
T ss_pred             ccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee
Confidence            00  00          111110000           00112334888899999999999999999998877655543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.88  E-value=2.3e-06  Score=90.65  Aligned_cols=119  Identities=18%  Similarity=0.252  Sum_probs=77.0

Q ss_pred             ccCCCCe-EEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC--CCCCccc-c--
Q 004255          344 DMDNAGI-VVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG--SGNHKYD-W--  415 (765)
Q Consensus       344 ~~~~dG~-V~IwDl~s~~~i~~~~a--H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~--sG~~~~~-~--  415 (765)
                      +++..|+ |||||..+|+.+..|+.  -...|.+|+|||++.+||.+|++|+ ++||.++.......  +..+... +  
T Consensus       198 TaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lp  276 (346)
T KOG2111|consen  198 TASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLP  276 (346)
T ss_pred             EeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccc
Confidence            3445565 89999999999999974  2357999999999999999999886 99999976321000  0000000 0  


Q ss_pred             --CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          416 --NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       416 --~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                        -.+.+-..+++-  ......-++|-.+.+-++....||+-+=+.+.+..+
T Consensus       277 ky~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~  326 (346)
T KOG2111|consen  277 KYFSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPKNG  326 (346)
T ss_pred             hhcccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccccc
Confidence              001122222221  122345688998877777888899988777766533

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.87  E-value=1.2e-07  Score=99.15  Aligned_cols=176  Identities=18%  Similarity=0.301  Sum_probs=113.8

Q ss_pred             CCEEEEEECCCCeE--EEE--EeCCCCEEEEEecC---CeEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccc
Q 004255          172 PTAVRFYSFQSHCY--EHV--LRFRSSVCMVRCSP---RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI  243 (765)
Q Consensus       172 p~tV~lWdlktg~~--v~t--L~~~s~V~sV~~s~---~~La-V~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~  243 (765)
                      ++|..|||+.+|..  |++  +-+..+|++|+|.+   +++| ||.++.|++||++.++.-..+...|.|..        
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~--------  243 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST--------  243 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC--------
Confidence            58999999999732  332  34667999999987   5555 56778899999998875444444444200        


Q ss_pred             ccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCC
Q 004255          244 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (765)
Q Consensus       244 ~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~  323 (765)
                          -.+-     |+....++                                                  +|..     
T Consensus       244 ----pLlR-----LswnkqDp--------------------------------------------------nymA-----  259 (364)
T KOG0290|consen  244 ----PLLR-----LSWNKQDP--------------------------------------------------NYMA-----  259 (364)
T ss_pred             ----ccee-----eccCcCCc--------------------------------------------------hHHh-----
Confidence                0011     11111110                                                  0000     


Q ss_pred             CCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCC
Q 004255          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~  401 (765)
                                         ..+.....|.|.|++.. ..+..|++|.+.|++++|.| +...|+||++ +..+-+||+..
T Consensus       260 -------------------Tf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD-D~qaliWDl~q  319 (364)
T KOG0290|consen  260 -------------------TFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD-DCQALIWDLQQ  319 (364)
T ss_pred             -------------------hhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC-cceEEEEeccc
Confidence                               01223457889999875 57889999999999999999 5778999998 67799999965


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc-cCCCEEEEEeCCC
Q 004255          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HYSQWIAIVSSKG  453 (765)
Q Consensus       402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS-pDg~~Las~S~dg  453 (765)
                      .+..+  +       ......|..     .+.|..|.|+ -.+.||+++..+.
T Consensus       320 ~~~~~--~-------~dPilay~a-----~~EVNqi~Ws~~~~Dwiai~~~kk  358 (364)
T KOG0290|consen  320 MPREN--G-------EDPILAYTA-----GGEVNQIQWSSSQPDWIAICFGKK  358 (364)
T ss_pred             ccccC--C-------CCchhhhhc-----cceeeeeeecccCCCEEEEEecCe
Confidence            32101  1       011223332     2469999999 4678999987653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.86  E-value=3.2e-08  Score=106.67  Aligned_cols=107  Identities=12%  Similarity=0.131  Sum_probs=80.9

Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      +++.|.+|.|||+.+++.+.++. |..-|.+++|+.||.+|+|++. |+.|||||.+.       |          ..+.
T Consensus       149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck-DKkvRv~dpr~-------~----------~~v~  209 (472)
T KOG0303|consen  149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK-DKKVRVIDPRR-------G----------TVVS  209 (472)
T ss_pred             hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc-cceeEEEcCCC-------C----------cEee
Confidence            45678899999999999988888 9999999999999999999999 56699999865       3          3444


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCCCCcccc
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPFGGDSGFQ  470 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S---~dgTVhIwdl~~~gg~~~~~  470 (765)
                      +. .++..+.-.-+-|=.+|..+.+|-   ++..+-|||-.....+..++
T Consensus       210 e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~  258 (472)
T KOG0303|consen  210 EG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ  258 (472)
T ss_pred             ec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE
Confidence            43 344444445567888998544442   35678999987666554443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.84  E-value=3.7e-08  Score=110.85  Aligned_cols=102  Identities=13%  Similarity=0.241  Sum_probs=76.6

Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      .+..|-+|+|||+.+++....|.+|++.|..++|||||+++||.+.||+ ||||+-+..                .+.+|
T Consensus       695 ~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~----------------e~pv~  757 (1012)
T KOG1445|consen  695 VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSR----------------EQPVY  757 (1012)
T ss_pred             hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCC----------------CCccc
Confidence            4567889999999999999999999999999999999999999999876 999986431                13444


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCC----cEEEEeCCCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSPF  463 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dg----TVhIwdl~~~  463 (765)
                      +-. |.....=--|.|--||++|++.+.|.    .|.+|+....
T Consensus       758 Eg~-gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  758 EGK-GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             cCC-CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence            421 11111112366888999999988775    3666666544

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.84  E-value=2.4e-07  Score=107.32  Aligned_cols=276  Identities=15%  Similarity=0.159  Sum_probs=156.2

Q ss_pred             cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCC
Q 004255           85 GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQ  164 (765)
Q Consensus        85 G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~  164 (765)
                      .+-||++.+..+. +..-....+|.++++.|          |..+  +|| .++                          
T Consensus       223 ~~~vW~~~~p~~P-e~~~~~~s~v~~~~f~p----------~~p~--ll~-gG~--------------------------  262 (555)
T KOG1587|consen  223 VLLVWSLKNPNTP-ELVLESPSEVTCLKFCP----------FDPN--LLA-GGC--------------------------  262 (555)
T ss_pred             eEEEEecCCCCCc-eEEEecCCceeEEEecc----------CCcc--eEE-eec--------------------------
Confidence            5899999876444 44444456899999987          4333  443 221                          


Q ss_pred             CCCCCCCCCEEEEEECCCCeE--EEEEe-----CCCCEEEEEecC-----CeEEEEeCCeEEEEECCCCceeE-EEEecC
Q 004255          165 SGNCVNSPTAVRFYSFQSHCY--EHVLR-----FRSSVCMVRCSP-----RIVAVGLATQIYCFDALTLENKF-SVLTYP  231 (765)
Q Consensus       165 ~~~~~~~p~tV~lWdlktg~~--v~tL~-----~~s~V~sV~~s~-----~~LaV~~~~~I~iwD~~t~~~l~-tl~t~p  231 (765)
                            ..+.|.+||++.+..  ...+.     ++.+|.+|....     +++.++.|++|..|++..+.+.. .+...+
T Consensus       263 ------y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~  336 (555)
T KOG1587|consen  263 ------YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES  336 (555)
T ss_pred             ------cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc
Confidence                  126899999998876  44443     456787777543     47778889999999877654321 111111


Q ss_pred             CcccCCCCccccccccceeEEcc----ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255          232 VPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (765)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~~Alsp----r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~  307 (765)
                      ......+ . ...++...++|-+    +++.- ++.+.+.+   ...+.+++...                     .+  
T Consensus       337 ~~~~~~~-~-~~~~~~t~~~F~~~~p~~FiVG-Te~G~v~~---~~r~g~~~~~~---------------------~~--  387 (555)
T KOG1587|consen  337 KKHKGQQ-S-SKAVGATSLKFEPTDPNHFIVG-TEEGKVYK---GCRKGYTPAPE---------------------VS--  387 (555)
T ss_pred             ccccccc-c-ccccceeeEeeccCCCceEEEE-cCCcEEEE---EeccCCccccc---------------------cc--
Confidence            1100000 0 0011233455544    33332 22222111   01111111000                     00  


Q ss_pred             ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEECCCC-CEEE
Q 004255          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSG-TLLV  385 (765)
Q Consensus       308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~-s~~~i~~~~aH~~~IsaLaFSpdG-~lLA  385 (765)
                           +..+..-...++....+.+||-+..+-   .+ ..|-+|+||.-. ...++..+..+...|.+++|||.- ..+|
T Consensus       388 -----~~~~~~~~~h~g~v~~v~~nPF~~k~f---ls-~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~  458 (555)
T KOG1587|consen  388 -----YKGHSTFITHIGPVYAVSRNPFYPKNF---LS-VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA  458 (555)
T ss_pred             -----ccccccccccCcceEeeecCCCcccee---ee-eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence                 000000011112222233333222111   12 238999999988 677888888999999999999964 5678


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       386 TaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      ++..+|+ |.|||+.....               ..+.....+  ......+.|+++|+.|++|...|++|+|++..
T Consensus       459 ~~d~~G~-l~iWDLl~~~~---------------~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  459 TVDGDGN-LDIWDLLQDDE---------------EPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEcCCCc-eehhhhhcccc---------------CCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            8887775 99999964211               122222222  23467788999999999999999999999964

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.79  E-value=2.7e-08  Score=107.63  Aligned_cols=133  Identities=15%  Similarity=0.161  Sum_probs=95.0

Q ss_pred             ccccCCCCeEEEEECCCC---------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255          342 GADMDNAGIVVVKDFVTR---------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK  412 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~---------~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~  412 (765)
                      +++++.|..|+||-+...         +.+..|..|+..|+++.|+|+|.+||||+++| .|.+|-........  ....
T Consensus        29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g-~v~lWk~~~~~~~~--~d~e  105 (434)
T KOG1009|consen   29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG-EVFLWKQGDVRIFD--ADTE  105 (434)
T ss_pred             eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc-eEEEEEecCcCCcc--ccch
Confidence            356778899999987542         23456788999999999999999999999955 69999764210000  0001


Q ss_pred             cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCCCCC
Q 004255          413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD  478 (765)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~  478 (765)
                      .+.....+.+.+..|| +...|++++|+||++++++++.|.++++||+....-...+..|..-+-+
T Consensus       106 ~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg  170 (434)
T KOG1009|consen  106 ADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG  170 (434)
T ss_pred             hhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence            1111222455555566 4567999999999999999999999999999976555566677654444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=3.2e-06  Score=96.16  Aligned_cols=72  Identities=18%  Similarity=0.285  Sum_probs=46.8

Q ss_pred             eEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255          372 ISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV  449 (765)
Q Consensus       372 IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~  449 (765)
                      ....+|||||++||.++.++.  .|.+||+..       +           ....+..+   ....+.+|+|||++|+.+
T Consensus       330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-------g-----------~~~~lt~~---~~~~~p~~spdg~~l~~~  388 (427)
T PRK02889        330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-------G-----------QVTALTDT---TRDESPSFAPNGRYILYA  388 (427)
T ss_pred             cCceEECCCCCEEEEEEccCCcEEEEEEECCC-------C-----------CeEEccCC---CCccCceECCCCCEEEEE
Confidence            345789999999998776543  588999854       2           12223222   124578999999999888


Q ss_pred             eCCC-cEEEEeCCCCC
Q 004255          450 SSKG-TCHVFVLSPFG  464 (765)
Q Consensus       450 S~dg-TVhIwdl~~~g  464 (765)
                      +.++ .-.||-+...|
T Consensus       389 ~~~~g~~~l~~~~~~g  404 (427)
T PRK02889        389 TQQGGRSVLAAVSSDG  404 (427)
T ss_pred             EecCCCEEEEEEECCC
Confidence            8654 33455444433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=1.4e-07  Score=100.42  Aligned_cols=105  Identities=13%  Similarity=0.245  Sum_probs=75.0

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      +.+.+++|+.+| +++||.. +++..+.++.+.+.+..++|+-.           ++-..|.+ ++              
T Consensus        39 ~e~~vav~lSngsv~lyd~~-tg~~l~~fk~~~~~~N~vrf~~~-----------ds~h~v~s-~s--------------   91 (376)
T KOG1188|consen   39 FETAVAVSLSNGSVRLYDKG-TGQLLEEFKGPPATTNGVRFISC-----------DSPHGVIS-CS--------------   91 (376)
T ss_pred             cceeEEEEecCCeEEEEecc-chhhhheecCCCCcccceEEecC-----------CCCCeeEE-ec--------------
Confidence            446788898887 9999996 58888999999888888887731           12123333 22              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC----CEEEEE--ecCCeEEEEeCC-----eEEEEECCCC
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS----SVCMVR--CSPRIVAVGLAT-----QIYCFDALTL  221 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s----~V~sV~--~s~~~LaV~~~~-----~I~iwD~~t~  221 (765)
                                        ++++||+||+++...+..+.+..    +-.+++  |+.++++.|...     .|++||++.-
T Consensus        92 ------------------sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~  153 (376)
T KOG1188|consen   92 ------------------SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE  153 (376)
T ss_pred             ------------------cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc
Confidence                              24799999999998888887632    334444  466888887643     4999999865


Q ss_pred             ce
Q 004255          222 EN  223 (765)
Q Consensus       222 ~~  223 (765)
                      +.
T Consensus       154 qq  155 (376)
T KOG1188|consen  154 QQ  155 (376)
T ss_pred             cc
Confidence            43

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=6e-07  Score=106.40  Aligned_cols=103  Identities=19%  Similarity=0.221  Sum_probs=76.8

Q ss_pred             ccCCCCeEEEEECCCC---cEEEEeccCCCC--eEEEEECCCCCE-EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255          344 DMDNAGIVVVKDFVTR---AIISQFKAHTSP--ISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~---~~i~~~~aH~~~--IsaLaFSpdG~l-LATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~  417 (765)
                      .|-.||.|++||.+..   ..+...+.|...  |..+.|.+.|-- |++||.+|. |++||++...     ..      .
T Consensus      1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~-----~e------~ 1293 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSS-----KE------T 1293 (1387)
T ss_pred             EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCc-----cc------c
Confidence            3457999999998764   357778899887  999999998876 999999875 9999996421     00      0


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .....+....|   ...+++..+++...||+|+. +.|.||++.-
T Consensus      1294 ~~~iv~~~~yG---s~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1294 FLTIVAHWEYG---SALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             cceeeeccccC---ccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence            00112222223   23788999999999999999 9999999863

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.74  E-value=6.8e-07  Score=93.43  Aligned_cols=103  Identities=19%  Similarity=0.231  Sum_probs=81.5

Q ss_pred             CCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          346 DNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      ..+++++.||+++.+....|+ +|-..|..|.|+|+-+ +||||++||. ||+||++..      .          ..+.
T Consensus       190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t------k----------~pv~  252 (370)
T KOG1007|consen  190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT------K----------FPVQ  252 (370)
T ss_pred             eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC------C----------cccc
Confidence            468899999999988777775 8999999999999855 5889998776 999998641      1          3566


Q ss_pred             EEecccccccEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCc
Q 004255          424 KLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDS  467 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpD-g~~Las~S~dgTVhIwdl~~~gg~~  467 (765)
                      ++. + |..+|+++.|+|- .+.|.+++.|..|.+|.......++
T Consensus       253 el~-~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~  295 (370)
T KOG1007|consen  253 ELP-G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ  295 (370)
T ss_pred             ccC-C-CceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence            664 3 4468999999985 4788999999999999877655443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=3.3e-06  Score=96.07  Aligned_cols=93  Identities=12%  Similarity=0.132  Sum_probs=55.3

Q ss_pred             EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       351 V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      |.++|+.+++.. .+..+.......+|||||++|+..+.++  ..|.+||+..       |           ....+..+
T Consensus       318 iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-------g-----------~~~~Lt~~  378 (433)
T PRK04922        318 IYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-------G-----------SVRTLTPG  378 (433)
T ss_pred             EEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-------C-----------CeEECCCC
Confidence            555666655432 2222223345689999999998876543  2588999854       2           12233322


Q ss_pred             cccccEEEEEEccCCCEEEEEeCC-CcEEEEeCCCCCC
Q 004255          429 ITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG  465 (765)
Q Consensus       429 ~~~a~I~slaFSpDg~~Las~S~d-gTVhIwdl~~~gg  465 (765)
                      .   ...+.+|||||++|+..+.+ +.-+||-++..++
T Consensus       379 ~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        379 S---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             C---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            1   23467999999998887764 3444554444343

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.72  E-value=6e-07  Score=97.08  Aligned_cols=129  Identities=11%  Similarity=0.045  Sum_probs=94.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcce------EeeeeccCCEEEEEEecCCCCCCCCC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFN------ELVSKRDGPVSFLQMQPFPVKDDGCE  124 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~------ells~~dg~V~~v~~lP~p~~~~~~d  124 (765)
                      .-+|+..|+-+.|+..  +    .++|++|+.+. ++||++-+.+..+      ..|.+|...|..|++-|.        
T Consensus        77 v~GHt~~vLDi~w~Pf--n----D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt--------  142 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPF--N----DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT--------  142 (472)
T ss_pred             ccCccccccccccCcc--C----CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc--------
Confidence            4567888775555331  2    36899999885 9999996554332      345678888999999874        


Q ss_pred             CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--
Q 004255          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--  202 (765)
Q Consensus       125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--  202 (765)
                          .++.|+..+                                 .+++|.+||+.||+.+-+|+++.-|+++.||.  
T Consensus       143 ----A~NVLlsag---------------------------------~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG  185 (472)
T KOG0303|consen  143 ----APNVLLSAG---------------------------------SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG  185 (472)
T ss_pred             ----chhhHhhcc---------------------------------CCceEEEEeccCCceeeecCCCCeEEEEEeccCC
Confidence                233555422                                 24699999999999999999999999999987  


Q ss_pred             CeEEEEe-CCeEEEEECCCCceeEEEEecC
Q 004255          203 RIVAVGL-ATQIYCFDALTLENKFSVLTYP  231 (765)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p  231 (765)
                      .+|++.. |.+|+|||.++++.+..-..|.
T Consensus       186 s~l~TtckDKkvRv~dpr~~~~v~e~~~he  215 (472)
T KOG0303|consen  186 SLLCTTCKDKKVRVIDPRRGTVVSEGVAHE  215 (472)
T ss_pred             ceeeeecccceeEEEcCCCCcEeeeccccc
Confidence            5666654 5679999999998776654443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.70  E-value=6.2e-07  Score=93.82  Aligned_cols=104  Identities=14%  Similarity=0.218  Sum_probs=82.2

Q ss_pred             ccCCCCeEEEEECCCCcEEEEec---cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFK---AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~---aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~  419 (765)
                      +.+.||.||+||++..+--..+-   ....|+..|++++ |-++|||-..|...|.|-|++-.      +          
T Consensus       214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P------~----------  277 (364)
T KOG0290|consen  214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP------C----------  277 (364)
T ss_pred             EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC------C----------
Confidence            44679999999999876444432   3256899999997 56789999888888999999652      2          


Q ss_pred             eEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCC
Q 004255          420 VHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      ..+.+|++  |.+.|..|+|.|.+ ..|+++++|..+-|||+.....
T Consensus       278 tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  278 TPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             cceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            36677753  45789999999986 6899999999999999987654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.69  E-value=3.6e-08  Score=112.29  Aligned_cols=99  Identities=13%  Similarity=0.292  Sum_probs=79.0

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      -.|+||+..+-..+..|.+|.-.|+.|+|||||++|+++|. |.++.||..+...    ..          ..-+.... 
T Consensus       552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-DRt~sl~~~~~~~----~~----------e~~fa~~k-  615 (764)
T KOG1063|consen  552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-DRTVSLYEVQEDI----KD----------EFRFACLK-  615 (764)
T ss_pred             eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-CceEEeeeeeccc----ch----------hhhhcccc-
Confidence            47999999988888899999999999999999999999999 5569999885410    00          00111111 


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      .|...|++++|+||+.++|++|.|++|.||.+...
T Consensus       616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            23346999999999999999999999999998764

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.69  E-value=2.5e-08  Score=112.19  Aligned_cols=100  Identities=23%  Similarity=0.307  Sum_probs=80.1

Q ss_pred             cccCCCCeEEEEECCCC-------cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255          343 ADMDNAGIVVVKDFVTR-------AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD  414 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~-------~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~  414 (765)
                      +.+..||.|+||-+..+       +....|.+|...|.+|.|+| -...||++|. +.+|++||+..       +     
T Consensus       644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy-d~Ti~lWDl~~-------~-----  710 (1012)
T KOG1445|consen  644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY-DSTIELWDLAN-------A-----  710 (1012)
T ss_pred             eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc-cceeeeeehhh-------h-----
Confidence            45678999999998653       45667889999999999999 4668999999 55699999965       2     


Q ss_pred             cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                           ....+| .|++ ..|.+++|||||+.+|+.+.||+++||.-..
T Consensus       711 -----~~~~~l-~gHt-dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  711 -----KLYSRL-VGHT-DQIFGIAWSPDGRRIATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             -----hhhhee-ccCc-CceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence                 122234 3544 5699999999999999999999999997543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=2.7e-06  Score=99.76  Aligned_cols=107  Identities=20%  Similarity=0.265  Sum_probs=80.9

Q ss_pred             ccccCCCCeEEEEE-CC-CC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255          342 GADMDNAGIVVVKD-FV-TR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (765)
Q Consensus       342 ~~~~~~dG~V~IwD-l~-s~--~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~  417 (765)
                      .+.++.||.|.||. +. ++  ...+.|.=|..+|.+|+|++||.+|.||+..| .+-+|.+.+.      +        
T Consensus       220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~-VLv~Wq~~T~------~--------  284 (792)
T KOG1963|consen  220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG-VLVLWQLETG------K--------  284 (792)
T ss_pred             EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce-EEEEEeecCC------C--------
Confidence            45677889999995 33 12  23456777889999999999999999999965 6889998652      1        


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~  469 (765)
                       .+-|-+|     .+.|..+.+|||+.+.+....|+.||+-..........+
T Consensus       285 -kqfLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI  330 (792)
T KOG1963|consen  285 -KQFLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI  330 (792)
T ss_pred             -ccccccc-----CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence             0222222     367999999999999999999999999887655444333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.69  E-value=2.4e-06  Score=93.23  Aligned_cols=104  Identities=17%  Similarity=0.207  Sum_probs=67.3

Q ss_pred             CCeEEEEECCCC----cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          348 AGIVVVKDFVTR----AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       348 dG~V~IwDl~s~----~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      ++.|.+||+.+.    +.+..+.++ .....++|+|+|++|++++..+..|.|||+.+.      |.    .........
T Consensus       101 ~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~------g~----l~~~~~~~~  169 (330)
T PRK11028        101 ANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD------GH----LVAQEPAEV  169 (330)
T ss_pred             CCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC------Cc----ccccCCCce
Confidence            567788887632    223333332 345678999999999888877678999999542      20    000000111


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGG  465 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~gg  465 (765)
                      ....|.   ....++|+|||++|+++.. +++|.+|+++...+
T Consensus       170 ~~~~g~---~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~  209 (330)
T PRK11028        170 TTVEGA---GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG  209 (330)
T ss_pred             ecCCCC---CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence            222232   2567999999999988876 99999999986433

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.68  E-value=4.3e-07  Score=102.95  Aligned_cols=93  Identities=9%  Similarity=0.087  Sum_probs=58.0

Q ss_pred             ccCCCCeEE---EEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEEEEcc
Q 004255          366 KAHTSPISA---LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSH  441 (765)
Q Consensus       366 ~aH~~~Isa---LaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~-~a~I~slaFSp  441 (765)
                      ++|...|..   +-|..|...||||+.-|..|+||||+..+..-..+         ......+....+ .-.+.++....
T Consensus       211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e---------p~~~~~~~t~skrs~G~~nL~lDs  281 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE---------PRGSDKYPTHSKRSVGQVNLILDS  281 (720)
T ss_pred             ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccC---------CCcccCccCcccceeeeEEEEecC
Confidence            355555555   55668889999999955569999997642110000         001111100000 11366777777


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCc
Q 004255          442 YSQWIAIVSSKGTCHVFVLSPFGGDS  467 (765)
Q Consensus       442 Dg~~Las~S~dgTVhIwdl~~~gg~~  467 (765)
                      -|.+|.+.+.|++|..|++...+..+
T Consensus       282 sGt~L~AsCtD~sIy~ynm~s~s~sP  307 (720)
T KOG0321|consen  282 SGTYLFASCTDNSIYFYNMRSLSISP  307 (720)
T ss_pred             CCCeEEEEecCCcEEEEeccccCcCc
Confidence            78999888889999999998776543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.67  E-value=9.7e-07  Score=89.85  Aligned_cols=127  Identities=20%  Similarity=0.290  Sum_probs=87.9

Q ss_pred             CEEEEEECC-CCeEEEEEeC--CCCEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccc
Q 004255          173 TAVRFYSFQ-SHCYEHVLRF--RSSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN  244 (765)
Q Consensus       173 ~tV~lWdlk-tg~~v~tL~~--~s~V~sV~~s~--~~LaV~~---~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~  244 (765)
                      +...||.++ .+..+..+..  .++|.+++++|  +.+|+..   ..+|.+||+. ++.++++...+             
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~-------------  102 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQP-------------  102 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCC-------------
Confidence            345555552 2345666654  45799999998  4555442   3479999996 55556554321             


Q ss_pred             cccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255          245 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (765)
Q Consensus       245 ~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p  322 (765)
                        .+.+.++|  ++||.++-.                                                           
T Consensus       103 --~n~i~wsP~G~~l~~~g~~-----------------------------------------------------------  121 (194)
T PF08662_consen  103 --RNTISWSPDGRFLVLAGFG-----------------------------------------------------------  121 (194)
T ss_pred             --ceEEEECCCCCEEEEEEcc-----------------------------------------------------------
Confidence              24577777  677666521                                                           


Q ss_pred             CCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEE
Q 004255          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIF  397 (765)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d-----Gt~IrVW  397 (765)
                                             ...|.|.+||+.+.+.+.++...  .++.++|||||++|+|++..     ++.++||
T Consensus       122 -----------------------n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw  176 (194)
T PF08662_consen  122 -----------------------NLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIW  176 (194)
T ss_pred             -----------------------CCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence                                   23478999999998888877543  47899999999999999863     5669999


Q ss_pred             eC
Q 004255          398 RI  399 (765)
Q Consensus       398 di  399 (765)
                      +.
T Consensus       177 ~~  178 (194)
T PF08662_consen  177 SF  178 (194)
T ss_pred             Ee
Confidence            97

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=2e-06  Score=100.85  Aligned_cols=231  Identities=15%  Similarity=0.095  Sum_probs=130.0

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CCEEEEEecCC-----eE-EEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR-----IV-AVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~-----~L-aV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~  245 (765)
                      ++|+||+..||++++.|.++ .++..+.+.++     ++ ...+++.|++||-..++++.++..+-.+            
T Consensus        37 ~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v------------  104 (792)
T KOG1963|consen   37 NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPV------------  104 (792)
T ss_pred             CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCce------------
Confidence            58999999999999999876 58888887762     22 4467889999999999988887632110            


Q ss_pred             ccceeEEcc-----ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccccc
Q 004255          246 GYGPMAVGP-----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL  320 (765)
Q Consensus       246 ~~~~~Alsp-----r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~  320 (765)
                        ..+-+.|     +.++|.+....      .+.....                    .+..++.....+-+......++
T Consensus       105 --~~~~~~~~~a~~s~~~~~s~~~~------~~~~~~s--------------------~~~~~q~~~~~~~t~~~~~~d~  156 (792)
T KOG1963|consen  105 --HALVYKPAQADISANVYVSVEDY------SILTTFS--------------------KKLSKQSSRFVLATFDSAKGDF  156 (792)
T ss_pred             --eEEEechhHhCccceeEeecccc------eeeeecc--------------------cccccceeeeEeeeccccchhh
Confidence              1111111     12233221100      0000000                    0000111111110110000000


Q ss_pred             CCCC-CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE-E---eccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 004255          321 LPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-Q---FKAHTSPISALCFDPSGTLLVTASVYGNNIN  395 (765)
Q Consensus       321 ~p~~-s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~-~---~~aH~~~IsaLaFSpdG~lLATaS~dGt~Ir  395 (765)
                      .... -..+...++.+.     ......+..+.+|+..++.... .   -..|+.++.+.+|||.++++|+|..||+ |.
T Consensus       157 ~~~~~~~~~I~~~~~ge-----~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~  230 (792)
T KOG1963|consen  157 LKEHQEPKSIVDNNSGE-----FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-IL  230 (792)
T ss_pred             hhhhcCCccEEEcCCce-----EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EE
Confidence            0000 001111111111     1112344567788887754111 1   1257888999999999999999999887 99


Q ss_pred             EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       396 VWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      ||.---.     ++.     +   .....|+.  |.+.|.+++||+||.+|.+|+..+.+-+|.+.+.+
T Consensus       231 vw~d~~~-----~~~-----~---~t~t~lHW--H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  231 VWRDFGS-----SDD-----S---ETCTLLHW--HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             EEecccc-----ccc-----c---ccceEEEe--cccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            9963110     010     0   11122333  33579999999999999999999999999998865

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=1.2e-06  Score=92.43  Aligned_cols=39  Identities=15%  Similarity=0.389  Sum_probs=34.9

Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       360 ~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                      +.+..|..|.++|..+.|+-.|+.|++.+.||. +|+|..
T Consensus       279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-VRLWka  317 (361)
T KOG2445|consen  279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-VRLWKA  317 (361)
T ss_pred             EEeeeccCCCCceEEEEEeeeeeEEeecCCCce-eeehhh
Confidence            356778899999999999999999999999775 999985

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.63  E-value=1.5e-06  Score=103.23  Aligned_cols=106  Identities=14%  Similarity=0.177  Sum_probs=75.0

Q ss_pred             cccCCCCeEEEEECCCCcE--EEEeccCC--C-CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255          343 ADMDNAGIVVVKDFVTRAI--ISQFKAHT--S-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~--i~~~~aH~--~-~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~  417 (765)
                      ++++++|.|++||++....  ..++..|.  + .+++|..+++...+|+|+. + .|+||++.        |..-..   
T Consensus      1273 vSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~--------G~~l~~--- 1339 (1387)
T KOG1517|consen 1273 VSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS--------GEQLNI--- 1339 (1387)
T ss_pred             eeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC--------hhhhcc---
Confidence            4567899999999987432  23344554  4 5999999999999999997 4 69999984        210000   


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                        .+-+...-|.....+.|++|+|---.||+|+.|.+|-||...+.
T Consensus      1340 --~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 --IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             --cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence              01011111222335799999999999999999999999987653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.63  E-value=4.2e-06  Score=90.98  Aligned_cols=93  Identities=17%  Similarity=0.286  Sum_probs=65.2

Q ss_pred             eEEEEECCC-CcEEEEeccCCCCeEEEEECC------------------CCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 004255          350 IVVVKDFVT-RAIISQFKAHTSPISALCFDP------------------SGTLLVTASVYGNNINIFRIMPSCMRSGSGN  410 (765)
Q Consensus       350 ~V~IwDl~s-~~~i~~~~aH~~~IsaLaFSp------------------dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~  410 (765)
                      +..+++-.. .+++..+.+-..+..++.|+|                  -+..+|.|.. + .+-|||.++.        
T Consensus       262 ~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~-svyvydtq~~--------  331 (434)
T KOG1009|consen  262 TSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-N-SVYVYDTQTL--------  331 (434)
T ss_pred             eeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-c-eEEEeccccc--------
Confidence            344554332 356677777777777777775                  2345677777 3 4899998542        


Q ss_pred             CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                               .+++... +.|-..|++++||+||.+|+.+|.||.+-+--+++
T Consensus       332 ---------~P~~~v~-nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  332 ---------EPLAVVD-NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP  373 (434)
T ss_pred             ---------cceEEEe-eeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence                     3555443 44556799999999999999999999988766654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=5.4e-07  Score=98.22  Aligned_cols=74  Identities=23%  Similarity=0.325  Sum_probs=61.9

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255          370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV  449 (765)
Q Consensus       370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~  449 (765)
                      ..|++|+.|+||+++|-|+.+|. |-|++....                 +.++..++- |...|+.|.|+||.+++++.
T Consensus       282 ~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l-----------------q~~~~vk~a-H~~~VT~ltF~Pdsr~~~sv  342 (398)
T KOG0771|consen  282 KSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL-----------------QRLQYVKEA-HLGFVTGLTFSPDSRYLASV  342 (398)
T ss_pred             CcceeEEEcCCCcEEEEeccCCc-EEEEEecee-----------------eeeEeehhh-heeeeeeEEEcCCcCccccc
Confidence            57999999999999999999776 889998542                 455555443 44579999999999999999


Q ss_pred             eCCCcEEEEeCCC
Q 004255          450 SSKGTCHVFVLSP  462 (765)
Q Consensus       450 S~dgTVhIwdl~~  462 (765)
                      |.+.+++|..|.-
T Consensus       343 Ss~~~~~v~~l~v  355 (398)
T KOG0771|consen  343 SSDNEAAVTKLAV  355 (398)
T ss_pred             ccCCceeEEEEee
Confidence            9999999999864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.63  E-value=3.3e-07  Score=93.27  Aligned_cols=93  Identities=15%  Similarity=0.296  Sum_probs=71.4

Q ss_pred             cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      +..++.|.|||+. ++.+..|.  ..+++.|.|||+|++||+|+.++  ..+.+||+..       .          ..+
T Consensus        79 g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-------~----------~~i  138 (194)
T PF08662_consen   79 GSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-------K----------KKI  138 (194)
T ss_pred             ccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-------C----------EEe
Confidence            3456689999997 66667774  56889999999999999998631  2499999854       1          345


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeC------CCcEEEEeCC
Q 004255          423 YKLHRGITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLS  461 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~------dgTVhIwdl~  461 (765)
                      .+..   + ..+..++|||||++|++++.      |+.++||+..
T Consensus       139 ~~~~---~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  139 STFE---H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             eccc---c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            4443   2 23789999999999999875      7889999975

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=2.3e-06  Score=92.65  Aligned_cols=105  Identities=21%  Similarity=0.205  Sum_probs=85.4

Q ss_pred             cccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          343 ADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      +++..-+.|++||...+ +++.+|.--..+|+++...|+|+++.+|...|. +..||++.       +          .+
T Consensus       220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~-------~----------kl  281 (412)
T KOG3881|consen  220 ATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRG-------G----------KL  281 (412)
T ss_pred             EEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccC-------c----------ee
Confidence            34556689999999875 578889888899999999999999999999775 89999864       2          23


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      +.....|.+ +.|.+|--+|..++||+++.|..++|||+.+.+-.
T Consensus       282 ~g~~~kg~t-Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  282 LGCGLKGIT-GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             eccccCCcc-CCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            333234544 46999999999999999999999999999985443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.59  E-value=1.4e-06  Score=99.00  Aligned_cols=89  Identities=13%  Similarity=0.130  Sum_probs=60.0

Q ss_pred             EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 004255          351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT  430 (765)
Q Consensus       351 V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~  430 (765)
                      |.+||+.+++ +..+..|...+.+.+|+|||+.|+.++..+...+||++...      +          .....+  +..
T Consensus       274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~------~----------~~~~~l--~~~  334 (429)
T PRK01742        274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS------G----------GGASLV--GGR  334 (429)
T ss_pred             EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC------C----------CCeEEe--cCC
Confidence            5556776665 45566777778899999999988877754445899987431      1          011111  111


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       431 ~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                       .  .+++|||||++|+.++.++ +.+||+..
T Consensus       335 -~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~  362 (429)
T PRK01742        335 -G--YSAQISADGKTLVMINGDN-VVKQDLTS  362 (429)
T ss_pred             -C--CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence             1  4578999999999988866 44588764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=4.4e-05  Score=86.60  Aligned_cols=51  Identities=18%  Similarity=0.188  Sum_probs=36.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe--CC--eEEEEECCCCce
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLEN  223 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~--~~--~I~iwD~~t~~~  223 (765)
                      ..|.+||+.+|+......+...+.+.+++|  +.|+...  ++  .|++||+.+++.
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~  279 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL  279 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence            379999999998765555666666778887  5666543  22  599999988763

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=2.1e-07  Score=104.31  Aligned_cols=111  Identities=18%  Similarity=0.239  Sum_probs=83.8

Q ss_pred             ccccCCCCeEEEEECCC--------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255          342 GADMDNAGIVVVKDFVT--------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY  413 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s--------~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~  413 (765)
                      +.++..+|++.+|.+..        -+.+.+|++|.+||.|++..+.|..+.||+.||+ ||.|++-+...    -.-++
T Consensus       309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n~d----p~ds~  383 (577)
T KOG0642|consen  309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPNQD----PDDSY  383 (577)
T ss_pred             EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCCCC----ccccc
Confidence            34788999999999932        2478899999999999999999999999999775 99998843210    00001


Q ss_pred             ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      +.    ..+-...-|++. .||.+++|..-..|+++|.|||+++|....
T Consensus       384 dp----~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  384 DP----SVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             Cc----chhccceecccc-ceeeeeecccccceeeecCCceEEeeccCC
Confidence            10    112222246654 599999999999999999999999998753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.52  E-value=2.7e-05  Score=87.44  Aligned_cols=86  Identities=15%  Similarity=0.187  Sum_probs=55.2

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      .|.++|+.+++. ..+..+...+...+|+|||++|+.++.++.  .|.+||+..       +           ....+..
T Consensus       303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-------~-----------~~~~l~~  363 (417)
T TIGR02800       303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-------G-----------GERVLTD  363 (417)
T ss_pred             eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-------C-----------CeEEccC
Confidence            566777776654 334444556778899999999998887542  466777643       2           1122221


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHV  457 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhI  457 (765)
                      +   ......+|+|||++|+..+.++....
T Consensus       364 ~---~~~~~p~~spdg~~l~~~~~~~~~~~  390 (417)
T TIGR02800       364 T---GLDESPSFAPNGRMILYATTRGGRGV  390 (417)
T ss_pred             C---CCCCCceECCCCCEEEEEEeCCCcEE
Confidence            1   12345689999999998888764433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.50  E-value=0.00026  Score=78.38  Aligned_cols=99  Identities=14%  Similarity=0.155  Sum_probs=67.5

Q ss_pred             CCCeEEEEECCCC-----cEEEEecc-------CCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCccc
Q 004255          347 NAGIVVVKDFVTR-----AIISQFKA-------HTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMR  405 (765)
Q Consensus       347 ~dG~V~IwDl~s~-----~~i~~~~a-------H~~~IsaLaFSpdG~lLATaS~---------dGt~IrVWdi~~~~~~  405 (765)
                      ..|.|.+.|+...     +.+..+..       ..+.+.-++|+|+|+.|..+..         .++.|.|+|+.+    
T Consensus       213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t----  288 (352)
T TIGR02658       213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT----  288 (352)
T ss_pred             cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC----
Confidence            3389999996443     33333321       1223334999999999888542         125789999865    


Q ss_pred             CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCCC
Q 004255          406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVS-SKGTCHVFVLSPFGG  465 (765)
Q Consensus       406 ~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~Las~S-~dgTVhIwdl~~~gg  465 (765)
                         +          +.+.++.-|   ..+..|+||||++ +|.+.. .+++|.|+|+...+.
T Consensus       289 ---~----------kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       289 ---G----------KRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             ---C----------eEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence               2          466666544   3589999999999 877776 589999999876543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.48  E-value=2.4e-05  Score=89.11  Aligned_cols=90  Identities=12%  Similarity=0.174  Sum_probs=59.5

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      .|.+||+.+++. ..+..|.......+|+|||+.|+.++..+.  .|.+||+..       +           ....+..
T Consensus       271 ~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-------~-----------~~~~lt~  331 (435)
T PRK05137        271 DIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-------S-----------NPRRISF  331 (435)
T ss_pred             eEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-------C-----------CeEEeec
Confidence            577888887764 456666666778999999999998875432  466667532       1           1222322


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCC---cEEEEeC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKG---TCHVFVL  460 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dg---TVhIwdl  460 (765)
                      +  ...+...+|||||++|+..+.++   .|.+||+
T Consensus       332 ~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~  365 (435)
T PRK05137        332 G--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP  365 (435)
T ss_pred             C--CCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence            2  12356688999999999887543   3555665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=5.9e-07  Score=97.91  Aligned_cols=130  Identities=15%  Similarity=0.221  Sum_probs=89.4

Q ss_pred             ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc--cC-------------
Q 004255          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM--RS-------------  406 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~--~~-------------  406 (765)
                      ++.++.||++|||+..+...+..+.+|...|..|.|||||++||+-+.+  ..+||++.+...  ..             
T Consensus       159 latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--~~~VW~~~~g~~~a~~t~~~k~~~~~~cR  236 (398)
T KOG0771|consen  159 LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--SARVWSVNTGAALARKTPFSKDEMFSSCR  236 (398)
T ss_pred             eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC--ceEEEEeccCchhhhcCCcccchhhhhce
Confidence            3467899999999999888888999999999999999999999999995  489999976310  00             


Q ss_pred             --CCCCC-cccc-----CCcceEEEEE--ecc---------cc-cccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          407 --GSGNH-KYDW-----NSSHVHLYKL--HRG---------IT-SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       407 --~sG~~-~~~~-----~~s~~~l~~l--~rG---------~~-~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                        ....+ ..-.     ......++++  ..+         .. ...|.+++-|+||+++|.|+.||.|-|++.......
T Consensus       237 F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~  316 (398)
T KOG0771|consen  237 FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL  316 (398)
T ss_pred             ecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee
Confidence              00000 0000     0000111111  111         00 125899999999999999999999999999876553


Q ss_pred             cc-ccccc
Q 004255          467 SG-FQTLS  473 (765)
Q Consensus       467 ~~-~~~h~  473 (765)
                      .- -+.|.
T Consensus       317 ~~vk~aH~  324 (398)
T KOG0771|consen  317 QYVKEAHL  324 (398)
T ss_pred             Eeehhhhe
Confidence            32 24564

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.45  E-value=1.9e-05  Score=89.95  Aligned_cols=93  Identities=22%  Similarity=0.262  Sum_probs=61.2

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE--eCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF--RIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVW--di~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ..|.+||+.+++. ..+..|.......+|+|||+.|+..+..+....||  |+..       +.        .+.+ .+ 
T Consensus       272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-------g~--------~~~l-t~-  333 (433)
T PRK04922        272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-------GS--------AERL-TF-  333 (433)
T ss_pred             ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------eEEe-ec-
Confidence            3688999988764 45666666667789999999999887644334555  4422       20        1122 22 


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCC---cEEEEeCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP  462 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dg---TVhIwdl~~  462 (765)
                      .|   ......+|||||++|+..+.++   .|.+||+..
T Consensus       334 ~g---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~  369 (433)
T PRK04922        334 QG---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST  369 (433)
T ss_pred             CC---CCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence            12   1234689999999999876543   578888754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.45  E-value=0.00032  Score=77.54  Aligned_cols=84  Identities=19%  Similarity=0.363  Sum_probs=59.1

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S  450 (765)
                      ....|+++|||++|..+......|-+|++...     .|        ....+..+..+  ...-..++|+|||++|+++.
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-----~g--------~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~  310 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-----TG--------TLTLVQTVPTG--GKFPRHFAFSPDGRYLYVAN  310 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-----TT--------TEEEEEEEEES--SSSEEEEEE-TTSSEEEEEE
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecC-----CC--------ceEEEEEEeCC--CCCccEEEEeCCCCEEEEEe
Confidence            57889999999999988887778999999431     12        11233333321  12368999999999999887


Q ss_pred             -CCCcEEEEeCCCCCCCccc
Q 004255          451 -SKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       451 -~dgTVhIwdl~~~gg~~~~  469 (765)
                       .+++|.+|+++...|....
T Consensus       311 ~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  311 QDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             TTTTEEEEEEEETTTTEEEE
T ss_pred             cCCCeEEEEEEeCCCCcEEE
Confidence             5679999999877765443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.42  E-value=2.3e-07  Score=103.36  Aligned_cols=98  Identities=17%  Similarity=0.215  Sum_probs=70.2

Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 004255          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (765)
Q Consensus       361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (765)
                      ++....--++.|+..+|+|||++||+.|.||. +||||...                  ++|.-+.+-. -+-..|++||
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt------------------~eLlg~mkSY-FGGLLCvcWS  341 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDT------------------QELLGVMKSY-FGGLLCVCWS  341 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccH------------------HHHHHHHHhh-ccceEEEEEc
Confidence            34444334568999999999999999999775 99999854                  1221111110 1248899999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCCCCC
Q 004255          441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD  478 (765)
Q Consensus       441 pDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~~~~  478 (765)
                      |||+||++|+.|.-|.||.+....-..--++|.+.+..
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~  379 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV  379 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence            99999999999999999999865433334677765433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.42  E-value=1.4e-05  Score=86.07  Aligned_cols=98  Identities=20%  Similarity=0.317  Sum_probs=70.5

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      +..|+|||..++..+....---+.++-|.|||||.+|..|+-|+ +.+||+....            |-   ...+.+- 
T Consensus       217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da-vfrlw~e~q~------------wt---~erw~lg-  279 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA-VFRLWQENQS------------WT---KERWILG-  279 (445)
T ss_pred             cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc-eeeeehhccc------------ce---ecceecc-
Confidence            56899999999887665544557889999999999999999965 5999976321            10   1112222 


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                         ...|+.-+|+|+|++|.-+.... -.||.+.-.+..
T Consensus       280 ---sgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~  314 (445)
T KOG2139|consen  280 ---SGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGED  314 (445)
T ss_pred             ---CCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCC
Confidence               23699999999999987776554 468887655443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.42  E-value=2.8e-05  Score=88.61  Aligned_cols=94  Identities=18%  Similarity=0.176  Sum_probs=61.0

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~  429 (765)
                      .|.+||+.+++.. .+..+...+...+|+|||+.|+..+.++...+||.+...     .|           ...++... 
T Consensus       268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-----~g-----------~~~~lt~~-  329 (429)
T PRK03629        268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-----GG-----------APQRITWE-  329 (429)
T ss_pred             EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-----CC-----------CeEEeecC-
Confidence            4888999887654 444455577889999999999888876545677754221     01           11222211 


Q ss_pred             ccccEEEEEEccCCCEEEEEeCC-C--cEEEEeCCC
Q 004255          430 TSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP  462 (765)
Q Consensus       430 ~~a~I~slaFSpDg~~Las~S~d-g--TVhIwdl~~  462 (765)
                       .....+.+|||||++|+..+.+ +  .+.+||+..
T Consensus       330 -~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~  364 (429)
T PRK03629        330 -GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  364 (429)
T ss_pred             -CCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence             1235678999999999887654 3  366667653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.41  E-value=7.4e-06  Score=91.51  Aligned_cols=202  Identities=19%  Similarity=0.202  Sum_probs=130.1

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      ..+|++++.+| |.|.+  ..+.+.+.++.|-|.|.+-.+.|+..            -|| . +|+              
T Consensus        75 ~d~~~i~s~DGkf~il~--k~~rVE~sv~AH~~A~~~gRW~~dGt------------gLl-t-~GE--------------  124 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN--KSARVERSISAHAAAISSGRWSPDGA------------GLL-T-AGE--------------  124 (737)
T ss_pred             cceEEEEcCCceEEEec--ccchhhhhhhhhhhhhhhcccCCCCc------------eee-e-ecC--------------
Confidence            45788888777 88876  46889999999999999999998642            133 2 332              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEec
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTY  230 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL-~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~  230 (765)
                                        ++.|++|+- +|-+..++ ++..+|++++..|  .-++-+..++++|=-+.-.-..      
T Consensus       125 ------------------DG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~------  179 (737)
T KOG1524|consen  125 ------------------DGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKI------  179 (737)
T ss_pred             ------------------CceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccce------
Confidence                              368999985 56555555 4678999999877  3444455556654322111000      


Q ss_pred             CCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccc
Q 004255          231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS  310 (765)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~  310 (765)
                                           +  +|=|--+  .+++    +.|                                    
T Consensus       180 ---------------------i--~WkAHDG--iiL~----~~W------------------------------------  194 (737)
T KOG1524|consen  180 ---------------------I--RWRAHDG--LVLS----LSW------------------------------------  194 (737)
T ss_pred             ---------------------e--EEeccCc--EEEE----eec------------------------------------
Confidence                                 0  2222211  0000    001                                    


Q ss_pred             eeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 004255          311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY  390 (765)
Q Consensus       311 ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d  390 (765)
                                               .+-..-+++++.|-..+|||.. |..+.+-.+|..||++++|+|+ +++|.+|. 
T Consensus       195 -------------------------~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-  246 (737)
T KOG1524|consen  195 -------------------------STQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-  246 (737)
T ss_pred             -------------------------CccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-
Confidence                                     0000013466788899999975 5666667789999999999999 77777776 


Q ss_pred             CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcE
Q 004255          391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTC  455 (765)
Q Consensus       391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTV  455 (765)
                       ++.|+ .                         +.    ..+.|..++||+||..+++|+..|.+
T Consensus       247 -nt~R~-~-------------------------~p----~~GSifnlsWS~DGTQ~a~gt~~G~v  280 (737)
T KOG1524|consen  247 -NTARF-S-------------------------SP----RVGSIFNLSWSADGTQATCGTSTGQL  280 (737)
T ss_pred             -eeeee-c-------------------------CC----CccceEEEEEcCCCceeeccccCceE
Confidence             23441 1                         11    12358899999999999999998864

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.37  E-value=3.6e-06  Score=87.27  Aligned_cols=56  Identities=21%  Similarity=0.334  Sum_probs=51.6

Q ss_pred             cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                      ++++=||.||||..++.++++.++-|...|++++|+||..++|.||.|+ .|-+|++
T Consensus       267 ATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~-rISLWkL  322 (323)
T KOG0322|consen  267 ATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA-RISLWKL  322 (323)
T ss_pred             eecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc-eEEeeec
Confidence            4667899999999999999999999999999999999999999999966 4999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.37  E-value=0.00011  Score=75.72  Aligned_cols=65  Identities=14%  Similarity=0.094  Sum_probs=54.3

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CCEEEEEe---cCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCC
Q 004255          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRC---SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAG  237 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~---s~~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~  237 (765)
                      +.+.-||+++|+.-.+++.| +.|.+|..   ++++|..+-|+++++||.+|.++..+|..+.+|...+
T Consensus       136 ~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR  204 (325)
T KOG0649|consen  136 GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR  204 (325)
T ss_pred             eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence            58999999999999999977 47888775   4577777778899999999999999998877765443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.36  E-value=3e-05  Score=88.25  Aligned_cols=93  Identities=17%  Similarity=0.210  Sum_probs=59.3

Q ss_pred             EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 004255          351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT  430 (765)
Q Consensus       351 V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~  430 (765)
                      |.++|+.++. +..+..|...+...+|+|||+.|+..+..+....||.+...     .+        ..+.+ .+. |  
T Consensus       266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-----~g--------~~~~l-t~~-g--  327 (427)
T PRK02889        266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-----GG--------AAQRV-TFT-G--  327 (427)
T ss_pred             EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-----CC--------ceEEE-ecC-C--
Confidence            4445555444 45566666556678999999999887765555788876321     01        01222 222 2  


Q ss_pred             cccEEEEEEccCCCEEEEEeCCC---cEEEEeCCC
Q 004255          431 SATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP  462 (765)
Q Consensus       431 ~a~I~slaFSpDg~~Las~S~dg---TVhIwdl~~  462 (765)
                       ......+|||||++|+..+.++   .|.+||+..
T Consensus       328 -~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~  361 (427)
T PRK02889        328 -SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT  361 (427)
T ss_pred             -CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence             1234678999999999888665   588888765

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.36  E-value=1.2e-05  Score=82.55  Aligned_cols=108  Identities=12%  Similarity=0.154  Sum_probs=73.0

Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE-CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaF-SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      .++.||.+.-||+++|+...++++|+.-|-++.- +.+| .+.|+++||+ +||||+++......-+     .    ..-
T Consensus       131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGt-vRvWd~kt~k~v~~ie-----~----yk~  199 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG-QILSGAEDGT-VRVWDTKTQKHVSMIE-----P----YKN  199 (325)
T ss_pred             EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-ceeecCCCcc-EEEEeccccceeEEec-----c----ccC
Confidence            3457899999999999999999999999999998 5555 5669999886 9999998731100000     0    000


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      ..+.|-+-..+|-+++-+  ..||++|... .+-||.+.....
T Consensus       200 ~~~lRp~~g~wigala~~--edWlvCGgGp-~lslwhLrsse~  239 (325)
T KOG0649|consen  200 PNLLRPDWGKWIGALAVN--EDWLVCGGGP-KLSLWHLRSSES  239 (325)
T ss_pred             hhhcCcccCceeEEEecc--CceEEecCCC-ceeEEeccCCCc
Confidence            011232222357666655  4599888654 478999976543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.36  E-value=0.00028  Score=80.92  Aligned_cols=51  Identities=22%  Similarity=0.204  Sum_probs=34.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE-e-CC--eEEEEECCCCce
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-L-AT--QIYCFDALTLEN  223 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~-~-~~--~I~iwD~~t~~~  223 (765)
                      ..|.+||+.+++......+.....+.+++|  +.|+.. . ++  +|+++|+.+++.
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~  298 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL  298 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence            379999999987654444555555677877  556643 2 22  499999988763

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.34  E-value=1e-06  Score=98.44  Aligned_cols=71  Identities=15%  Similarity=0.278  Sum_probs=60.6

Q ss_pred             CCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~  401 (765)
                      ...+.+++++++++    ..++||.+||||+.+.+++..++.--+.+.|++|||||+++||+++|| .+.||.+..
T Consensus       293 in~f~FS~DG~~LA----~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~e  363 (636)
T KOG2394|consen  293 INEFAFSPDGKYLA----TVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEE  363 (636)
T ss_pred             ccceeEcCCCceEE----EEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEecc
Confidence            44566777777654    668999999999999998888888888999999999999999999966 799999853

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.31  E-value=1.1e-06  Score=64.98  Aligned_cols=38  Identities=26%  Similarity=0.655  Sum_probs=35.2

Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 004255          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR  398 (765)
Q Consensus       360 ~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWd  398 (765)
                      +++.+|++|.++|.+|+|+|++.+|||++.|+ .|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~-~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDG-TIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTS-EEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCC-EEEEEC
Confidence            57889999999999999999999999999965 699997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.31  E-value=2.7e-05  Score=87.42  Aligned_cols=79  Identities=22%  Similarity=0.245  Sum_probs=59.7

Q ss_pred             eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 004255           98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF  177 (765)
Q Consensus        98 ~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~l  177 (765)
                      ...|.+|.|.|.++++.-+             +-|||.  |.+                               +..+.|
T Consensus        43 E~eL~GH~GCVN~LeWn~d-------------G~lL~S--GSD-------------------------------D~r~iv   76 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNAD-------------GELLAS--GSD-------------------------------DTRLIV   76 (758)
T ss_pred             hhhhccccceecceeecCC-------------CCEEee--cCC-------------------------------cceEEe
Confidence            3567899999999999843             347754  321                               368999


Q ss_pred             EECCCCeEEEEEe--CCCCEEEEEecC----CeEEEEeC-CeEEEEECCCCc
Q 004255          178 YSFQSHCYEHVLR--FRSSVCMVRCSP----RIVAVGLA-TQIYCFDALTLE  222 (765)
Q Consensus       178 Wdlktg~~v~tL~--~~s~V~sV~~s~----~~LaV~~~-~~I~iwD~~t~~  222 (765)
                      ||.-..+++|.+.  +...|++++|-|    ++|+.|.. ..|++||+...+
T Consensus        77 Wd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~  128 (758)
T KOG1310|consen   77 WDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSK  128 (758)
T ss_pred             ecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccc
Confidence            9999999999996  446899999976    56666554 469999987643

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.29  E-value=0.00028  Score=80.46  Aligned_cols=80  Identities=14%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 004255          362 ISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF  439 (765)
Q Consensus       362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF  439 (765)
                      ...+..+...+...+|||||++||..+.++  ..|.+||+..       |           ....+..+  ...+.+.+|
T Consensus       319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-------g-----------~~~~Lt~~--~~~~~~p~w  378 (428)
T PRK01029        319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-------G-----------RDYQLTTS--PENKESPSW  378 (428)
T ss_pred             eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-------C-----------CeEEccCC--CCCccceEE
Confidence            344545555677889999999998776543  3588899854       2           22233322  123677999


Q ss_pred             ccCCCEEEEEeC-CC--cEEEEeCC
Q 004255          440 SHYSQWIAIVSS-KG--TCHVFVLS  461 (765)
Q Consensus       440 SpDg~~Las~S~-dg--TVhIwdl~  461 (765)
                      +|||++|+..+. ++  .+.++++.
T Consensus       379 SpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        379 AIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECC
Confidence            999999886543 33  35555554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.24  E-value=0.00013  Score=81.78  Aligned_cols=93  Identities=17%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ..|.+||+.++.. ..+..|.......+|+|||+.|+..+.++.  .|.++|+..       +           ....+.
T Consensus       258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-------~-----------~~~~l~  318 (417)
T TIGR02800       258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-------G-----------EVRRLT  318 (417)
T ss_pred             ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-------C-----------CEEEee
Confidence            3578888887654 445555555567799999999987776543  355555532       1           122222


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCC---cEEEEeCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP  462 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dg---TVhIwdl~~  462 (765)
                      .+  ...+...+|||||++|+.++.++   .|.+||+..
T Consensus       319 ~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       319 FR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             cC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence            11  12356789999999999998876   677777764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=1.3e-05  Score=90.16  Aligned_cols=56  Identities=21%  Similarity=0.408  Sum_probs=51.8

Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM  400 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~  400 (765)
                      .+..++.|+++|..+++.+....+|...++++++.|+|-+|++++.|+. +++|.+.
T Consensus       506 ~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld  561 (577)
T KOG0642|consen  506 TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLD  561 (577)
T ss_pred             ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhcc
Confidence            4568999999999999999999999999999999999999999999775 9999873

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.22  E-value=3e-06  Score=96.31  Aligned_cols=144  Identities=15%  Similarity=0.155  Sum_probs=106.3

Q ss_pred             CEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCcc
Q 004255          194 SVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR  271 (765)
Q Consensus       194 ~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~  271 (765)
                      .|++|+|.|  ..|+++.++++++||..+|.++++|++|...             +       .-+||+-+..       
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt-------------V-------ycVAys~dGk-------   66 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT-------------V-------YCVAYAKDGK-------   66 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccce-------------E-------EEEEEccCCc-------
Confidence            788899987  5677777899999999999999999988752             1       1245543210       


Q ss_pred             ccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeE
Q 004255          272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV  351 (765)
Q Consensus       272 ~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V  351 (765)
                                                      .                                     .++++.|..|
T Consensus        67 --------------------------------r-------------------------------------FASG~aDK~V   77 (1081)
T KOG1538|consen   67 --------------------------------R-------------------------------------FASGSADKSV   77 (1081)
T ss_pred             --------------------------------e-------------------------------------eccCCCceeE
Confidence                                            0                                     1234678899


Q ss_pred             EEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 004255          352 VVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT  430 (765)
Q Consensus       352 ~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~  430 (765)
                      .||.-.-   ...++ .|...|.||.|+|-...|||+|-.+  .-+|....                  ..+.+.+   .
T Consensus        78 I~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~q------------------K~V~K~k---s  131 (1081)
T KOG1538|consen   78 IIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQ------------------KSVSKHK---S  131 (1081)
T ss_pred             EEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhh------------------hhHHhhh---h
Confidence            9997543   23343 6999999999999999999999844  67887632                  1121211   2


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255          431 SATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       431 ~a~I~slaFSpDg~~Las~S~dgTVhIwd  459 (765)
                      .+.|.+++|..||++|+.|-.+|||.|-+
T Consensus       132 s~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen  132 SSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             heeEEEeeecCCCcEEEEeccCceEEeec
Confidence            34689999999999999999999999863

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.21  E-value=3.1e-05  Score=90.14  Aligned_cols=101  Identities=17%  Similarity=0.080  Sum_probs=71.2

Q ss_pred             ccCCCCeEEEEECCCC--------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 004255          344 DMDNAGIVVVKDFVTR--------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW  415 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~--------~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~  415 (765)
                      -|...|.|.--+-...        +....+..|.++|.++.++|=+..+...+-|. ++|||.....      -      
T Consensus       365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW-~vriWs~~~~------~------  431 (555)
T KOG1587|consen  365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW-TVRIWSEDVI------A------  431 (555)
T ss_pred             EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc-eeEeccccCC------C------
Confidence            4566787766332221        23446778999999999999888776666644 5999987421      0      


Q ss_pred             CCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCC
Q 004255          416 NSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~  463 (765)
                          ..++.+.+.  .+.|++++|||-- ..+|++..||++.||||...
T Consensus       432 ----~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  432 ----SPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             ----Ccchhhhhc--cceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence                255555442  2349999999975 57888899999999999764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.19  E-value=7.6e-05  Score=85.27  Aligned_cols=257  Identities=15%  Similarity=0.108  Sum_probs=151.6

Q ss_pred             CCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      ++.-|+++..+.+-|||+++ |.+..+|.+|...|.+|++..+             +.+.|.  |.              
T Consensus        23 DGsqL~lAAg~rlliyD~nd-G~llqtLKgHKDtVycVAys~d-------------GkrFAS--G~--------------   72 (1081)
T KOG1538|consen   23 DGTQLILAAGSRLLVYDTSD-GTLLQPLKGHKDTVYCVAYAKD-------------GKRFAS--GS--------------   72 (1081)
T ss_pred             CCceEEEecCCEEEEEeCCC-cccccccccccceEEEEEEccC-------------Cceecc--CC--------------
Confidence            46678888888999999964 7788999999999999999854             225543  21              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecC
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYP  231 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p  231 (765)
                                       +++.|.+|+-+ .+-+-.+.+.+.|.++.|||  ..|+++.-...-+|....-.    +.-|.
T Consensus        73 -----------------aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~----V~K~k  130 (1081)
T KOG1538|consen   73 -----------------ADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS----VSKHK  130 (1081)
T ss_pred             -----------------CceeEEEeccc-ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh----HHhhh
Confidence                             25789999875 33333445667999999999  67887766677788654321    11111


Q ss_pred             CcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccc
Q 004255          232 VPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL  309 (765)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~  309 (765)
                      ..       .    ....+++..  .|||.+--+.      .++.-..+.            .             .++.
T Consensus       131 ss-------~----R~~~CsWtnDGqylalG~~nG------TIsiRNk~g------------E-------------ek~~  168 (1081)
T KOG1538|consen  131 SS-------S----RIICCSWTNDGQYLALGMFNG------TISIRNKNG------------E-------------EKVK  168 (1081)
T ss_pred             hh-------e----eEEEeeecCCCcEEEEeccCc------eEEeecCCC------------C-------------cceE
Confidence            10       0    123345544  5666653221      110000000            0             0000


Q ss_pred             ceeecccccccCCCCCCCC---ccCCCccccccccccccCCCCeEEEEECC--------CCcEEEEeccCCCCeEEEEEC
Q 004255          310 SKTLSKYCQELLPDGSSSP---VSPNSVWKVGRHAGADMDNAGIVVVKDFV--------TRAIISQFKAHTSPISALCFD  378 (765)
Q Consensus       310 ~ktls~~~~~~~p~~s~~~---~s~s~~~~~~~~~~~~~~~dG~V~IwDl~--------s~~~i~~~~aH~~~IsaLaFS  378 (765)
                         +      -.|++.+++   ...+|...+        +.+.++-|-|..        +|+.+..=+.-.-.-.|+.+-
T Consensus       169 ---I------~Rpgg~Nspiwsi~~~p~sg~--------G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf  231 (1081)
T KOG1538|consen  169 ---I------ERPGGSNSPIWSICWNPSSGE--------GRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYF  231 (1081)
T ss_pred             ---E------eCCCCCCCCceEEEecCCCCC--------CccceEEEEeccceeEEEEecceeecccccCCCCchhheec
Confidence               0      123332222   111221111        122334444432        133332212222233478888


Q ss_pred             CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255          379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF  458 (765)
Q Consensus       379 pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIw  458 (765)
                      ++|.++..|+.|+. +++|--.        |          .++-++  |....+||.++..|+|++++.|..|||+--|
T Consensus       232 ~NGEy~LiGGsdk~-L~~fTR~--------G----------vrLGTv--g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy  290 (1081)
T KOG1538|consen  232 TNGEYILLGGSDKQ-LSLFTRD--------G----------VRLGTV--GEQDSWIWTVQAKPNSQYVVVGCQDGTIACY  290 (1081)
T ss_pred             cCCcEEEEccCCCc-eEEEeec--------C----------eEEeec--cccceeEEEEEEccCCceEEEEEccCeeehh
Confidence            99999999999664 8888632        4          456555  2234579999999999999999999999999


Q ss_pred             eCCC
Q 004255          459 VLSP  462 (765)
Q Consensus       459 dl~~  462 (765)
                      ++-.
T Consensus       291 Nl~f  294 (1081)
T KOG1538|consen  291 NLIF  294 (1081)
T ss_pred             hhHH
Confidence            8853

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=0.0034  Score=68.18  Aligned_cols=85  Identities=19%  Similarity=0.238  Sum_probs=59.8

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEE
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIA  447 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~~La  447 (765)
                      .....+|..+|||++|..+-.--..|-+|.+.+.      +          .+|--+.+-.+.+ .-.+..|+++|++|+
T Consensus       243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~------~----------g~L~~~~~~~teg~~PR~F~i~~~g~~Li  306 (346)
T COG2706         243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD------G----------GKLELVGITPTEGQFPRDFNINPSGRFLI  306 (346)
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC------C----------CEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence            3467899999999999887764457889998663      2          1232222111222 246899999999998


Q ss_pred             EEeCC-CcEEEEeCCCCCCCccc
Q 004255          448 IVSSK-GTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       448 s~S~d-gTVhIwdl~~~gg~~~~  469 (765)
                      ++..+ .+++||.+++..|..+.
T Consensus       307 aa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         307 AANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             EEccCCCcEEEEEEcCCCceEEe
Confidence            88765 57999999988776543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.18  E-value=9.8e-05  Score=80.02  Aligned_cols=70  Identities=19%  Similarity=0.238  Sum_probs=50.4

Q ss_pred             EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc------cccEEEEEEccCCCEE
Q 004255          373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT------SATIQDICFSHYSQWI  446 (765)
Q Consensus       373 saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~------~a~I~slaFSpDg~~L  446 (765)
                      ..+.|+|+|+.|.+--. |..--+||+..                  ++++.|+..+.      .+.|.+++|--|- -+
T Consensus       248 M~~~~~~~G~Q~msiRR-~~~P~~~D~~S------------------~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v  307 (609)
T KOG4227|consen  248 MGSLWSPSGNQFMSIRR-GKCPLYFDFIS------------------QRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TV  307 (609)
T ss_pred             hheeeCCCCCeehhhhc-cCCCEEeeeec------------------ccceeEeccCCCCcceeeeeeeeeeeecce-ee
Confidence            45789999999987766 66667888854                  23344432211      1358899998765 49


Q ss_pred             EEEeCCCcEEEEeCCC
Q 004255          447 AIVSSKGTCHVFVLSP  462 (765)
Q Consensus       447 as~S~dgTVhIwdl~~  462 (765)
                      ++||++=.+|+|.|..
T Consensus       308 ~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  308 ATGSDHWGIHIWKLPR  323 (609)
T ss_pred             eccCcccceEEEecCC
Confidence            9999999999999853

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.15  E-value=0.00043  Score=77.48  Aligned_cols=176  Identities=15%  Similarity=0.112  Sum_probs=111.8

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEE-EEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVC-MVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~-sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (765)
                      +.|.|.|..+++.+.++.....+. .+.+++  +++.++. ++.|.++|+.+++.+.++.....|              .
T Consensus        16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~--------------~   81 (369)
T PF02239_consen   16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP--------------R   81 (369)
T ss_dssp             TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE--------------E
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc--------------c
Confidence            689999999999999998766554 466776  6666654 678999999999988888753321              2


Q ss_pred             eeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255          249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (765)
Q Consensus       249 ~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~  326 (765)
                      .+++++  |||+.+.                                                                 
T Consensus        82 ~i~~s~DG~~~~v~n-----------------------------------------------------------------   96 (369)
T PF02239_consen   82 GIAVSPDGKYVYVAN-----------------------------------------------------------------   96 (369)
T ss_dssp             EEEE--TTTEEEEEE-----------------------------------------------------------------
T ss_pred             eEEEcCCCCEEEEEe-----------------------------------------------------------------
Confidence            255544  4443332                                                                 


Q ss_pred             CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC-------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-------TSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH-------~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                                         ..++.+.|+|..+.+.+.++...       .+.+.+|..+|....++.+-.+...|-+-|.
T Consensus        97 -------------------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen   97 -------------------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             -------------------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             -------------------cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence                               13468899999999999888643       3468899999999977777776555655565


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCC
Q 004255          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG  464 (765)
Q Consensus       400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl~~~g  464 (765)
                      ...               .......+..|   ....+..|+||++|+.++ ..++.+-++|..+.+
T Consensus       158 ~d~---------------~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  158 SDP---------------KNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             TTS---------------SCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             ccc---------------cccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccce
Confidence            331               00222333333   236789999999987654 567789999987643

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.12  E-value=0.00026  Score=81.14  Aligned_cols=94  Identities=18%  Similarity=0.280  Sum_probs=59.6

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE--eCCCCcccCCCCCCccccCCcceEEEEEe-
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF--RIMPSCMRSGSGNHKYDWNSSHVHLYKLH-  426 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVW--di~~~~~~~~sG~~~~~~~~s~~~l~~l~-  426 (765)
                      .|.++|+.+++. ..+..|.......+|+|||+.|+..+..+....||  |+..       |           ....+. 
T Consensus       287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-------g-----------~~~~Lt~  347 (448)
T PRK04792        287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-------G-----------KVSRLTF  347 (448)
T ss_pred             EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-------C-----------CEEEEec
Confidence            577888887764 45555656667889999999998777644334555  5432       2           112221 


Q ss_pred             cccccccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGG  465 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~gg  465 (765)
                      .+.   .....+|||||++|+..+. ++..+||-++..++
T Consensus       348 ~g~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        348 EGE---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             CCC---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            121   2345789999999988765 45667776655444

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.09  E-value=1.1e-06  Score=102.05  Aligned_cols=96  Identities=23%  Similarity=0.374  Sum_probs=82.4

Q ss_pred             ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      +.++..|..|+||...++.+++..+||.+.|+.++.+....++|+||. |.+||||.+..       |          ..
T Consensus       205 Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~-D~vIrvWrl~~-------~----------~p  266 (1113)
T KOG0644|consen  205 IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN-DKVIRVWRLPD-------G----------AP  266 (1113)
T ss_pred             EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc-CceEEEEecCC-------C----------ch
Confidence            346778899999999999999999999999999999999999999999 67899999954       3          24


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      +-.| ||++. .|++|+|||--    +++.|||+++||..
T Consensus       267 vsvL-rghtg-avtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  267 VSVL-RGHTG-AVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             HHHH-hcccc-ceeeeccCccc----cCCCCCceEecccc
Confidence            4334 67664 59999999964    88999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.09  E-value=7.6e-06  Score=90.25  Aligned_cols=181  Identities=18%  Similarity=0.319  Sum_probs=122.1

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CCEEEEEecCC--eEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~--~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (765)
                      +-++.-|+.+|++|..+.-. +.+..++-||.  ++-+|-. ++|.+|....-+.+-.+.+|..|             +.
T Consensus       231 G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~-------------V~  297 (545)
T KOG1272|consen  231 GFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGP-------------VS  297 (545)
T ss_pred             CceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCC-------------cc
Confidence            46888899999999998754 67888888994  3444443 47999998888887778888764             34


Q ss_pred             eeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255          249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (765)
Q Consensus       249 ~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~  326 (765)
                      .+|+.+  +|+|.+                                                                  
T Consensus       298 siAv~~~G~YMaTt------------------------------------------------------------------  311 (545)
T KOG1272|consen  298 SIAVDRGGRYMATT------------------------------------------------------------------  311 (545)
T ss_pred             eEEECCCCcEEeec------------------------------------------------------------------
Confidence            556643  344333                                                                  


Q ss_pred             CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC
Q 004255          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS  406 (765)
Q Consensus       327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~  406 (765)
                                         +.|..|+|||+.....+.++.. ..+...++||..|.+  .+|. |..+.||.=.-    +
T Consensus       312 -------------------G~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglL--A~~~-G~~v~iw~d~~----~  364 (545)
T KOG1272|consen  312 -------------------GLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLL--ALSY-GDHVQIWKDAL----K  364 (545)
T ss_pred             -------------------ccccceeEeeeccccccceeec-CCCccccccccccce--eeec-CCeeeeehhhh----c
Confidence                               3466899999998776665544 457888999988743  3455 66799995321    1


Q ss_pred             CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccc
Q 004255          407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT  471 (765)
Q Consensus       407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~  471 (765)
                      +++        .....|--+  ...+.|.++.|-|-...|.+|-..|.--|  |-|..|++++.+
T Consensus       365 ~s~--------~~~~pYm~H--~~~~~V~~l~FcP~EDvLGIGH~~G~tsi--lVPGsGePN~Ds  417 (545)
T KOG1272|consen  365 GSG--------HGETPYMNH--RCGGPVEDLRFCPYEDVLGIGHAGGITSI--LVPGSGEPNYDS  417 (545)
T ss_pred             CCC--------CCCcchhhh--ccCcccccceeccHHHeeeccccCCceeE--eccCCCCCCcch
Confidence            011        011222111  12347999999999999999988887666  456666665543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=0.00068  Score=76.94  Aligned_cols=92  Identities=17%  Similarity=0.175  Sum_probs=57.4

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      .|.+||+.+++. ..+..+........|+|||+.|+..+..+.  .|.++|+..       |.        ...+ .+ .
T Consensus       268 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-------g~--------~~~l-t~-~  329 (430)
T PRK00178        268 EIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-------GR--------AERV-TF-V  329 (430)
T ss_pred             eEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------EEEe-ec-C
Confidence            577889887764 345556556677899999999887775443  355556532       21        1122 11 1


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCC-C--cEEEEeCCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP  462 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~d-g--TVhIwdl~~  462 (765)
                      +.   .....+|||||++|+..+.+ +  .|.+||+..
T Consensus       330 ~~---~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t  364 (430)
T PRK00178        330 GN---YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR  364 (430)
T ss_pred             CC---CccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence            21   13457899999999988754 3  355666654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.05  E-value=9.2e-06  Score=90.99  Aligned_cols=83  Identities=19%  Similarity=0.283  Sum_probs=69.7

Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (765)
Q Consensus       362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (765)
                      .+.|.+|++-|+||.|+.||.+||+||+ +.-+.|||.-.                 .+.++.+..|++ +.|.++.|=|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSD-D~r~ivWd~~~-----------------~KllhsI~TgHt-aNIFsvKFvP  103 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSD-DTRLIVWDPFE-----------------YKLLHSISTGHT-ANIFSVKFVP  103 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCC-cceEEeecchh-----------------cceeeeeecccc-cceeEEeeec
Confidence            4578999999999999999999999998 55689999732                 146677777755 6799999988


Q ss_pred             C--CCEEEEEeCCCcEEEEeCCCC
Q 004255          442 Y--SQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       442 D--g~~Las~S~dgTVhIwdl~~~  463 (765)
                      .  .+.|++|..|..|||||++..
T Consensus       104 ~tnnriv~sgAgDk~i~lfdl~~~  127 (758)
T KOG1310|consen  104 YTNNRIVLSGAGDKLIKLFDLDSS  127 (758)
T ss_pred             cCCCeEEEeccCcceEEEEecccc
Confidence            5  478999999999999999863

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.03  E-value=9.4e-05  Score=78.78  Aligned_cols=185  Identities=19%  Similarity=0.217  Sum_probs=120.8

Q ss_pred             CCCeEEEEEecCcEEEEEccCCCcceEee---ee-c---cCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCC
Q 004255           73 VFKQVLLLGYQNGFQVLDVEDASNFNELV---SK-R---DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLA  145 (765)
Q Consensus        73 ~~~~vL~~G~~~G~qVWdv~~~g~~~ell---s~-~---dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~  145 (765)
                      .++.-|..||++.|+|||+.-.|...+..   .+ .   .|-+.++++.|..          .+  ++|+  +.      
T Consensus       168 ~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~----------~~--~~a~--gs------  227 (406)
T KOG2919|consen  168 PDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD----------SK--TLAV--GS------  227 (406)
T ss_pred             CCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC----------Cc--ceee--ec------
Confidence            35788999999999999996666443332   22 1   2456677777631          12  5665  21      


Q ss_pred             CCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe--CCeEEEEECCC
Q 004255          146 PGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL--ATQIYCFDALT  220 (765)
Q Consensus       146 ~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~--~~~I~iwD~~t  220 (765)
                                               ..+++-||.-..+..+..|-.+ +.|.-+++.+  +.|.+|.  +++|-+||++.
T Consensus       228 -------------------------Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  228 -------------------------YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             -------------------------ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence                                     1257888988888888888655 6899998876  6677665  46899999875


Q ss_pred             Cc-eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255          221 LE-NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM  299 (765)
Q Consensus       221 ~~-~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~  299 (765)
                      -+ .++.|..|..-         -| ..--+.+-|                                             
T Consensus       283 ~~~pv~~L~rhv~~---------TN-QRI~FDld~---------------------------------------------  307 (406)
T KOG2919|consen  283 SRDPVYALERHVGD---------TN-QRILFDLDP---------------------------------------------  307 (406)
T ss_pred             ccchhhhhhhhccC---------cc-ceEEEecCC---------------------------------------------
Confidence            42 22222211100         00 000011100                                             


Q ss_pred             hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEC
Q 004255          300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFD  378 (765)
Q Consensus       300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s-~~~i~~~~aH~~~IsaLaFS  378 (765)
                                             .           +.    -+++++++|.|++||+.. +..+..+..|..-++.++|+
T Consensus       308 -----------------------~-----------~~----~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsln  349 (406)
T KOG2919|consen  308 -----------------------K-----------GE----ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLN  349 (406)
T ss_pred             -----------------------C-----------Cc----eeeccCCCccEEEEecCCCCCcccccccccccccceecC
Confidence                                   0           00    123567899999999998 67788899999999999999


Q ss_pred             CCCCEEEEEEcCCCEEEEEeC
Q 004255          379 PSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       379 pdG~lLATaS~dGt~IrVWdi  399 (765)
                      |-=.+|||+|-  .  |+|-.
T Consensus       350 P~mpilatssG--q--r~f~~  366 (406)
T KOG2919|consen  350 PIMPILATSSG--Q--RIFKY  366 (406)
T ss_pred             cccceeeeccC--c--eeecC
Confidence            99888999874  3  67765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.02  E-value=0.00078  Score=82.00  Aligned_cols=111  Identities=16%  Similarity=0.159  Sum_probs=63.0

Q ss_pred             CCeEEEEECCCCcEEEEec-cCCCCeEEEEECCC---CCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcce-E
Q 004255          348 AGIVVVKDFVTRAIISQFK-AHTSPISALCFDPS---GTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHV-H  421 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpd---G~lLATaS~-dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~-~  421 (765)
                      .|.+.+||++=+..+.... +|..+|..|+.+|-   ....++++. --+-+-+|++....     +. ..-|.+... .
T Consensus      1216 ~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~-----~~-~vl~~s~~~p~ 1289 (1431)
T KOG1240|consen 1216 RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL-----RQ-TVLWASDGAPI 1289 (1431)
T ss_pred             CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc-----ce-EEEEcCCCCcc
Confidence            4678899998877777654 44578888877763   345665555 34568999986621     10 000100000 0


Q ss_pred             E-EEEec-----ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          422 L-YKLHR-----GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       422 l-~~l~r-----G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      + +.+-.     -...+ ...+++-.-+.++.+|+.|..|+.||......
T Consensus      1290 ls~~~Ps~~~~kp~~~~-~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1290 LSYALPSNDARKPDSLA-GISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             hhhhcccccCCCCCccc-ceeeecccCCceeeecCCccceeeccCCCccc
Confidence            0 00000     00011 22344555567899999999999999876443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.00028  Score=76.89  Aligned_cols=57  Identities=16%  Similarity=0.268  Sum_probs=50.4

Q ss_pred             ccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255          344 DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~-~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~  401 (765)
                      .+...|.+..||+..++.... |++-++.|.+|..+|.+.+||+|+- |..+||||+.+
T Consensus       264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL-DRyvRIhD~kt  321 (412)
T KOG3881|consen  264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL-DRYVRIHDIKT  321 (412)
T ss_pred             EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc-ceeEEEeeccc
Confidence            345678889999999998777 8899999999999999999999999 56799999975

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.99  E-value=0.00013  Score=87.19  Aligned_cols=103  Identities=14%  Similarity=0.150  Sum_probs=81.2

Q ss_pred             ccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          344 DMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      +.+.|.++++|++.+.+... +.-+|+..|..++|.|+  +++|+++| -+.|+|+..        |          ..+
T Consensus       192 s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ged-ctcrvW~~~--------~----------~~l  250 (967)
T KOG0974|consen  192 SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGED-CTCRVWGVN--------G----------TQL  250 (967)
T ss_pred             EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccc-eEEEEEecc--------c----------cee
Confidence            34567899999999988665 66799999999999998  99999995 569999763        2          122


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcc
Q 004255          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG  468 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~  468 (765)
                      -++ +++....|+.++..++.-++.++..|+++++|++...+-+..
T Consensus       251 ~~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~  295 (967)
T KOG0974|consen  251 EVY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGH  295 (967)
T ss_pred             hhh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccc
Confidence            222 233334599999999999999999999999999987665543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.96  E-value=0.0092  Score=68.01  Aligned_cols=49  Identities=16%  Similarity=0.219  Sum_probs=36.3

Q ss_pred             EEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeC----CeEEEEECCCCc
Q 004255          174 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLE  222 (765)
Q Consensus       174 tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~----~~I~iwD~~t~~  222 (765)
                      .|.++|+.+|+......+.+.+...+++|  +.|+....    .+|+++|+.+++
T Consensus       214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            79999999998766666777666677776  56665432    369999998775

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.93  E-value=3.4e-05  Score=92.13  Aligned_cols=98  Identities=20%  Similarity=0.217  Sum_probs=77.4

Q ss_pred             cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      +.+..-|.|.+|+....+....+.+|.+.|.++.|+-||+++||+|+ |.+||+|++.+...                .-
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd-DRsiRlW~i~s~~~----------------~~  211 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD-DRSIRLWPIDSREV----------------LG  211 (967)
T ss_pred             EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec-Ccceeeeecccccc----------------cC
Confidence            34556789999998854444468999999999999999999999999 56799999965210                11


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      ... -| |.+.|+.++|.|.  .|++++.|-|.++|+.+
T Consensus       212 ~~~-fg-HsaRvw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  212 CTG-FG-HSARVWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             ccc-cc-ccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence            111 13 4578999999998  99999999999999654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.92  E-value=0.00087  Score=72.15  Aligned_cols=78  Identities=19%  Similarity=0.310  Sum_probs=53.7

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cc-----ccccc---EEEE
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RG-----ITSAT---IQDI  437 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~---rG-----~~~a~---I~sl  437 (765)
                      -+.|+.+.|+++|++++|-+-  -+++|||+.-.      .        .....|.++   |-     ..+..   =..+
T Consensus       272 IsSISDvKFs~sGryilsRDy--ltvk~wD~nme------~--------~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  272 ISSISDVKFSHSGRYILSRDY--LTVKLWDLNME------A--------KPVETYPVHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             hhhhhceEEccCCcEEEEecc--ceeEEEecccc------C--------CcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence            457889999999999998765  36999999321      1        001222221   10     00111   2468


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          438 CFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       438 aFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      +||-|+.++++||-...+|+|++..
T Consensus       336 ~~sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  336 SWSGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             EEcCCcceEecccccceEEEecCCC
Confidence            9999999999999999999999654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.90  E-value=5.8e-05  Score=81.37  Aligned_cols=77  Identities=19%  Similarity=0.350  Sum_probs=61.9

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (765)
Q Consensus       366 ~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (765)
                      ++| .+|++|.+++||+.|+|||-++..|+|||..+       |.        ..++..  +|.  ..+.-+.|||||.+
T Consensus       193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-------g~--------~~pL~~--~gl--gg~slLkwSPdgd~  252 (445)
T KOG2139|consen  193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-------GQ--------KIPLIP--KGL--GGFSLLKWSPDGDV  252 (445)
T ss_pred             CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-------CC--------cccccc--cCC--CceeeEEEcCCCCE
Confidence            456 79999999999999999999999999999865       21        133332  222  24778999999999


Q ss_pred             EEEEeCCCcEEEEeCCC
Q 004255          446 IAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       446 Las~S~dgTVhIwdl~~  462 (765)
                      |.+++-|++.+||..+.
T Consensus       253 lfaAt~davfrlw~e~q  269 (445)
T KOG2139|consen  253 LFAATCDAVFRLWQENQ  269 (445)
T ss_pred             EEEecccceeeeehhcc
Confidence            99999999999997654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.90  E-value=0.00013  Score=81.52  Aligned_cols=103  Identities=19%  Similarity=0.310  Sum_probs=75.2

Q ss_pred             CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      ..+|.|.|.|..+.+.+..|.....+-..++|+|||++|..++.|| .|.++|+..       +          +.+.++
T Consensus        13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg-~vsviD~~~-------~----------~~v~~i   74 (369)
T PF02239_consen   13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDG-TVSVIDLAT-------G----------KVVATI   74 (369)
T ss_dssp             GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTS-EEEEEETTS-------S----------SEEEEE
T ss_pred             cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCC-eEEEEECCc-------c----------cEEEEE
Confidence            4578999999999999999987655545688999999999999866 599999965       2          466777


Q ss_pred             ecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCccc
Q 004255          426 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg~~~~  469 (765)
                      +-|.   .-.++++|+||++|+++. ..+++.|+|..+..-...+
T Consensus        75 ~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I  116 (369)
T PF02239_consen   75 KVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI  116 (369)
T ss_dssp             E-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred             ecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence            7663   357899999999998776 6899999998875444333

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.87  E-value=0.021  Score=63.13  Aligned_cols=104  Identities=23%  Similarity=0.379  Sum_probs=64.3

Q ss_pred             eEEEEECCCCc--E--EEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255          350 IVVVKDFVTRA--I--ISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (765)
Q Consensus       350 ~V~IwDl~s~~--~--i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~  424 (765)
                      .|.+|++....  .  ...+.. .-..-..|+|+|||+++....+....|.+|++.+.     .|        ....+..
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-----~g--------~~~~~~~  233 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-----DG--------SLTEIQT  233 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-----TT--------EEEEEEE
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-----CC--------ceeEEEE
Confidence            57777775543  2  222222 22334789999999999999888889999998621     02        1122222


Q ss_pred             Ee---cccccc-cEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCC
Q 004255          425 LH---RGITSA-TIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGD  466 (765)
Q Consensus       425 l~---rG~~~a-~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg~  466 (765)
                      ..   .+.... .-..|++||||++|.++. ..++|.+|+++...+.
T Consensus       234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~  280 (345)
T PF10282_consen  234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT  280 (345)
T ss_dssp             EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred             eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence            21   121111 467899999999988776 4678999999765443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.86  E-value=0.00083  Score=76.15  Aligned_cols=128  Identities=23%  Similarity=0.272  Sum_probs=92.0

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeC---CeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA---TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~---~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~  246 (765)
                      -+++.++++...+++-.|.-.++|+++.+|+  +-++|+..   .++.|||++ +..++.+.+-|               
T Consensus       250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egp---------------  313 (566)
T KOG2315|consen  250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGP---------------  313 (566)
T ss_pred             cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCC---------------
Confidence            4799999999777887888889999999998  55666553   469999975 33444433211               


Q ss_pred             cceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255          247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (765)
Q Consensus       247 ~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~  324 (765)
                      .+.+-++|  ++|+.++-                                                              
T Consensus       314 RN~~~fnp~g~ii~lAGF--------------------------------------------------------------  331 (566)
T KOG2315|consen  314 RNTAFFNPHGNIILLAGF--------------------------------------------------------------  331 (566)
T ss_pred             ccceEECCCCCEEEEeec--------------------------------------------------------------
Confidence            23344544  44444431                                                              


Q ss_pred             CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEEeC
Q 004255          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFRI  399 (765)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d-----Gt~IrVWdi  399 (765)
                                          +.-.|.+-|||+.+.+.+..+.+-..  +-..|+|||.+++||..-     ++.|+||+.
T Consensus       332 --------------------GNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  332 --------------------GNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             --------------------CCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence                                12357899999999999999987654  457899999999999763     445999997

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.84  E-value=0.0013  Score=75.10  Aligned_cols=76  Identities=21%  Similarity=0.152  Sum_probs=46.6

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S  450 (765)
                      .....+|||||+.||..+..+...+||.+...    ..+          .....+..+  ...+.+.+|||||++|+..+
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~----~~g----------~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~  345 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID----PEG----------QSPRLLTKK--YRNSSCPAWSPDGKKIAFCS  345 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECc----ccc----------cceEEeccC--CCCccceeECCCCCEEEEEE
Confidence            34567999999998887754444567754210    001          112222211  12456789999999999876


Q ss_pred             CC---CcEEEEeCCC
Q 004255          451 SK---GTCHVFVLSP  462 (765)
Q Consensus       451 ~d---gTVhIwdl~~  462 (765)
                      .+   ..|++||+..
T Consensus       346 ~~~g~~~I~v~dl~~  360 (428)
T PRK01029        346 VIKGVRQICVYDLAT  360 (428)
T ss_pred             cCCCCcEEEEEECCC
Confidence            54   3577787754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.82  E-value=0.0014  Score=74.52  Aligned_cols=206  Identities=15%  Similarity=0.164  Sum_probs=126.2

Q ss_pred             EEeCCCCEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecC
Q 004255          188 VLRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN  262 (765)
Q Consensus       188 tL~~~s~V~sV~~s~---~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~  262 (765)
                      .++.+..-.++..+.   .++++|....||-+++..|+-+..+.+...             ..+.+.+.+  -+||+++.
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~-------------~lN~v~in~~hgLla~Gt~  195 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG-------------ELNVVSINEEHGLLACGTE  195 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccc-------------cceeeeecCccceEEeccc
Confidence            444444445666554   788888888999999999987766654322             235666766  67888875


Q ss_pred             CceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC----CCCCccCCCccccc
Q 004255          263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG----SSSPVSPNSVWKVG  338 (765)
Q Consensus       263 ~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~----s~~~~s~s~~~~~~  338 (765)
                      +..+     --||......+            +..      .++..    +.     -.|..    ++.++.|+.    +
T Consensus       196 ~g~V-----EfwDpR~ksrv------------~~l------~~~~~----v~-----s~pg~~~~~svTal~F~d----~  239 (703)
T KOG2321|consen  196 DGVV-----EFWDPRDKSRV------------GTL------DAASS----VN-----SHPGGDAAPSVTALKFRD----D  239 (703)
T ss_pred             CceE-----EEecchhhhhh------------eee------ecccc----cC-----CCccccccCcceEEEecC----C
Confidence            5321     13444432111            000      00000    00     01111    112233322    2


Q ss_pred             cccccccCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255          339 RHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD  414 (765)
Q Consensus       339 ~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH--~~~IsaLaFSpd--G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~  414 (765)
                      ++..+.|..+|.|.|||+.+.+++. ++.|  ..||..+.|.+.  +..|+|+.  -..++|||-.+       |     
T Consensus       240 gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~D--k~~~kiWd~~~-------G-----  304 (703)
T KOG2321|consen  240 GLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQNKVVSMD--KRILKIWDECT-------G-----  304 (703)
T ss_pred             ceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCceEEecc--hHHhhhccccc-------C-----
Confidence            3445667889999999999987654 3444  568999999876  45666654  46799999644       3     


Q ss_pred             cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                           .....+   .....|.++||=|++-++.++-.+..+|.|=|...|.
T Consensus       305 -----k~~asi---Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP  347 (703)
T KOG2321|consen  305 -----KPMASI---EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP  347 (703)
T ss_pred             -----Cceeec---cccCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence                 111111   1234589999999999999999999999998876554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.70  E-value=0.00035  Score=77.92  Aligned_cols=297  Identities=16%  Similarity=0.143  Sum_probs=162.0

Q ss_pred             CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        51 ~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..+.++.-|.-+.|++       .+.+|++|.++- +-|||.........-.++|...|...+|+|          |++.
T Consensus       137 kL~~H~GcVntV~FN~-------~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP----------~s~d  199 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQ-------RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIP----------FSGD  199 (559)
T ss_pred             cccCCCCccceeeecc-------cCceeeccCccceEEeehhhccCcccccccccccchhhhhccC----------CCCC
Confidence            4677888888888987       266999999885 899999765555666778888898889998          6777


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-CCeEEEEE---eCCCCEEEEEecC---
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-SHCYEHVL---RFRSSVCMVRCSP---  202 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk-tg~~v~tL---~~~s~V~sV~~s~---  202 (765)
                      ++++ ..+.                   |              +.|++=.+- ++.+..+-   +++++|.-++.-|   
T Consensus       200 ~ti~-~~s~-------------------d--------------gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp  245 (559)
T KOG1334|consen  200 RTIV-TSSR-------------------D--------------GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP  245 (559)
T ss_pred             cCce-eccc-------------------c--------------CceeeeeeccccceecceecccccCccceeeecCCCC
Confidence            7763 2111                   1              234443332 33333222   4567787777544   


Q ss_pred             CeEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCcee-cCCccccCCCC
Q 004255          203 RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLL-SNSGRLSPQNL  277 (765)
Q Consensus       203 ~~La-V~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~-~~~G~~s~~~l  277 (765)
                      +-+. .|-+..+.=+|+.+......+.+-.+...       ..+....+|+.|   ..+|.++.+-+. .-.++. .+  
T Consensus       246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~-------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~-~~--  315 (559)
T KOG1334|consen  246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK-------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR-ID--  315 (559)
T ss_pred             CcccccccccceeeeeeccCCccceeeeeccCCc-------cceeeeeEecCCCCccccccCChhhhhhhhcccc-hh--
Confidence            4444 45555688889887653333332111000       012344566666   456666554211 000000 00  


Q ss_pred             CCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC-CCCC-C-CccCCCccccccccccccCCCCeEEEE
Q 004255          278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP-DGSS-S-PVSPNSVWKVGRHAGADMDNAGIVVVK  354 (765)
Q Consensus       278 t~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p-~~s~-~-~~s~s~~~~~~~~~~~~~~~dG~V~Iw  354 (765)
                                               +.-..|+   +.++|..-+- +..+ . -+..+    ..+.-+...-.|-.|.++
T Consensus       316 -------------------------~e~~n~~---~~~f~p~hl~~d~~v~ITgl~Ys----h~~sElLaSYnDe~IYLF  363 (559)
T KOG1334|consen  316 -------------------------KEENNGV---LDKFCPHHLVEDDPVNITGLVYS----HDGSELLASYNDEDIYLF  363 (559)
T ss_pred             -------------------------hccccch---hhhcCCccccccCcccceeEEec----CCccceeeeecccceEEe
Confidence                                     0000010   0111111000 0000 0 00000    000000112234455555


Q ss_pred             ECCC--C----------cEEEE-eccCCC--CeEEEEE-CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255          355 DFVT--R----------AIISQ-FKAHTS--PISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (765)
Q Consensus       355 Dl~s--~----------~~i~~-~~aH~~--~IsaLaF-SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s  418 (765)
                      .-..  |          ..+.. +++|..  .|-.+-| -|...++++||+-|+ |-||+-.+       |         
T Consensus       364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh-IFiW~K~t-------~---------  426 (559)
T KOG1334|consen  364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH-IFIWDKKT-------G---------  426 (559)
T ss_pred             ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccce-EEEEecch-------h---------
Confidence            3211  1          22333 788864  3556655 688999999999776 99999754       2         


Q ss_pred             ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                       +++. +..|.. ..|.||-=+|---.||+++-|.-|+||.-
T Consensus       427 -eii~-~MegDr-~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  427 -EIIR-FMEGDR-HVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             -HHHH-Hhhccc-ceEeccCCCCCCchhhccCCccceeeecC
Confidence             2332 333433 37999999999999999999999999964

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.69  E-value=0.00014  Score=53.63  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=31.5

Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255          421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwd  459 (765)
                      ++..++ | +...|++|+|+|++++|++++.|++|+|||
T Consensus         3 ~~~~~~-~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFR-G-HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEE-S-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEc-C-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            455664 4 345799999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.64  E-value=0.0042  Score=70.97  Aligned_cols=97  Identities=21%  Similarity=0.368  Sum_probs=77.4

Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      +.+.|+.|..|+...++.++.+++-...+.+++.+|||..|++||.   .|+|||+.+       +          ..+.
T Consensus       119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~-------k----------evv~  178 (541)
T KOG4547|consen  119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIET-------K----------EVVI  178 (541)
T ss_pred             ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccC-------c----------eEEE
Confidence            4567899999999999999999999999999999999999999986   699999976       2          3444


Q ss_pred             EEecccccccEEEEEEccC-----CCEEEEE-eCCCcEEEEeCCC
Q 004255          424 KLHRGITSATIQDICFSHY-----SQWIAIV-SSKGTCHVFVLSP  462 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpD-----g~~Las~-S~dgTVhIwdl~~  462 (765)
                      +| .| |...|.+++|--+     |.++.++ -.+.-+-+|-+..
T Consensus       179 ~f-tg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  179 TF-TG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Ee-cC-CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            44 45 4568999999888     6665544 3444577887765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.62  E-value=0.0014  Score=70.71  Aligned_cols=220  Identities=15%  Similarity=0.217  Sum_probs=131.2

Q ss_pred             CCCEEEEE-ECCCCeEEEEEeC--CCCEEEEEecC--CeEEEEeCC-eEEEEECC-CCceeEEEEecCCcccCCCCcccc
Q 004255          171 SPTAVRFY-SFQSHCYEHVLRF--RSSVCMVRCSP--RIVAVGLAT-QIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGI  243 (765)
Q Consensus       171 ~p~tV~lW-dlktg~~v~tL~~--~s~V~sV~~s~--~~LaV~~~~-~I~iwD~~-t~~~l~tl~t~p~p~~~~~~~~~~  243 (765)
                      .+++|||| ....+++-..+.+  ++++.++.++.  ++|.+++++ .+.=|-+. +.+....++.+..-    |+.   
T Consensus        44 ~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h----~~~---  116 (404)
T KOG1409|consen   44 EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH----QAR---  116 (404)
T ss_pred             ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh----hcc---
Confidence            35899999 5567888877764  67888888876  788899875 56666532 23222222222221    000   


Q ss_pred             ccccceeEEccceEEEecCCc-eecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255          244 NVGYGPMAVGPRWLAYASNTL-LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (765)
Q Consensus       244 ~~~~~~~Alspr~LAyas~~~-~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p  322 (765)
                       +..-.+++.+.|+...+.+. +.++.       ..           +|                   +.|.+|.-+-.+
T Consensus       117 -v~~~if~~~~e~V~s~~~dk~~~~hc-------~e-----------~~-------------------~~lg~Y~~~~~~  158 (404)
T KOG1409|consen  117 -VSAIVFSLTHEWVLSTGKDKQFAWHC-------TE-----------SG-------------------NRLGGYNFETPA  158 (404)
T ss_pred             -eeeEEecCCceeEEEeccccceEEEe-------ec-----------cC-------------------CcccceEeeccC
Confidence             01123556667887776542 22211       00           01                   111222211000


Q ss_pred             CCCCCCccCCCccccccccccccCCCCeEEEE--ECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVK--DFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM  400 (765)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~Iw--Dl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~  400 (765)
                      .    +....    ..  -...++..|.|.+-  +...-..+.++.+|..+|.+++|+|...+|.+++. ++.+-+||+-
T Consensus       159 t----~~~~d----~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~-d~~vi~wdig  227 (404)
T KOG1409|consen  159 S----ALQFD----AL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS-DHSVIMWDIG  227 (404)
T ss_pred             C----CCcee----eE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc-cCceEEEecc
Confidence            0    00000    00  01134455555443  33456788999999999999999999999999999 5669999993


Q ss_pred             CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       401 ~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      -     ..|           ..+++.+  ++..|+.++.-+--+.|.+++.||-|-+|+++-..
T Consensus       228 g-----~~g-----------~~~el~g--h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  228 G-----RKG-----------TAYELQG--HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             C-----Ccc-----------eeeeecc--chhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            1     112           3466653  23457777777777899999999999999998643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.60  E-value=0.0026  Score=72.59  Aligned_cols=53  Identities=21%  Similarity=0.449  Sum_probs=45.0

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCC-----CCEEEEEEcCCCEEEEEeCC
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-----GTLLVTASVYGNNINIFRIM  400 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd-----G~lLATaS~dGt~IrVWdi~  400 (765)
                      .+.|++||+++++.+.+|.+|.++|++++|--+     |.++.+...-+..|.+|-+.
T Consensus       163 s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  163 SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            468999999999999999999999999999887     77777665546678888763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.57  E-value=0.00097  Score=71.39  Aligned_cols=109  Identities=15%  Similarity=0.221  Sum_probs=61.8

Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE--EEE-----EeCCCCcccCCCCCCccccCCcc
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN--INI-----FRIMPSCMRSGSGNHKYDWNSSH  419 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~--IrV-----Wdi~~~~~~~~sG~~~~~~~~s~  419 (765)
                      .+-.|.||.+.+.+... ++--+..+-.++|+|||++.|-++..|..  +.|     |.+..++..+....+...|++..
T Consensus       112 F~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg  190 (447)
T KOG4497|consen  112 FDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG  190 (447)
T ss_pred             ceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC
Confidence            45578889888766432 33233456778999999998888763210  001     11100000000000111222111


Q ss_pred             -----------eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255          420 -----------VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       420 -----------~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwd  459 (765)
                                 -++|...||.   .|..++|||-+++||+|+.|+.++|-+
T Consensus       191 ~~laVwd~~Leykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  191 NWLAVWDNVLEYKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             cEEEEecchhhheeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence                       2344455553   378899999999999999999998844

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.56  E-value=0.05  Score=68.94  Aligned_cols=72  Identities=10%  Similarity=0.104  Sum_probs=51.7

Q ss_pred             EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-ccc-----------ccccEEEEEEc
Q 004255          373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGI-----------TSATIQDICFS  440 (765)
Q Consensus       373 saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-rG~-----------~~a~I~slaFS  440 (765)
                      ..|+|+++|.++++-+. ++.|++||....                  .+..+. .|.           .-.....|+++
T Consensus       807 ~Gvavd~dG~LYVADs~-N~rIrviD~~tg------------------~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd  867 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSY-NHKIKKLDPATK------------------RVTTLAGTGKAGFKDGKALKAQLSEPAGLALG  867 (1057)
T ss_pred             ceeeEeCCCcEEEEECC-CCEEEEEECCCC------------------eEEEEeccCCcCCCCCcccccccCCceEEEEe
Confidence            47899999997776665 567999998542                  111111 010           00136789999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCC
Q 004255          441 HYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       441 pDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      +||+.+++-+.+++|++||+...
T Consensus       868 ~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        868 ENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCCCEEEEECCCCEEEEEECCCC
Confidence            99999999999999999999764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.51  E-value=0.05  Score=61.12  Aligned_cols=162  Identities=17%  Similarity=0.147  Sum_probs=97.5

Q ss_pred             cccccceecccCCCCCCCcEEEEEEe-eccCC--C--------------CCCCeEEEEEecCcEEEEEccCCCcceEeee
Q 004255           40 AGASVAASISNASEDLKDQVTWAGFD-RLEYG--P--------------SVFKQVLLLGYQNGFQVLDVEDASNFNELVS  102 (765)
Q Consensus        40 ~~~s~~~~~~~~~~~~~~~v~w~~fd-~l~~~--~--------------~~~~~vL~~G~~~G~qVWdv~~~g~~~ells  102 (765)
                      +.-+.||.|+. .+.++|.+.=.-.+ .++-.  .              ...+..+++-+++..-|.+... +-+  +--
T Consensus       281 IvFq~~GdIyl-ydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~-~~~--iqv  356 (668)
T COG4946         281 IVFQNAGDIYL-YDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWD-GYS--IQV  356 (668)
T ss_pred             EEEecCCcEEE-eCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCC-Cee--EEc
Confidence            44578999998 77777776544343 11100  0              0235667777676644444321 112  222


Q ss_pred             eccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC
Q 004255          103 KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS  182 (765)
Q Consensus       103 ~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt  182 (765)
                      .+.+.|+..+++-+|.             -+++  +.                 ++|             -.|-+||..+
T Consensus       357 ~~~~~VrY~r~~~~~e-------------~~vi--gt-----------------~dg-------------D~l~iyd~~~  391 (668)
T COG4946         357 GKKGGVRYRRIQVDPE-------------GDVI--GT-----------------NDG-------------DKLGIYDKDG  391 (668)
T ss_pred             CCCCceEEEEEccCCc-------------ceEE--ec-----------------cCC-------------ceEEEEecCC
Confidence            4556799888875441             1222  21                 111             2799999999


Q ss_pred             CeEEEEEeCCCCEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceE
Q 004255          183 HCYEHVLRFRSSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWL  257 (765)
Q Consensus       183 g~~v~tL~~~s~V~sV~~s~--~~LaV~~~~-~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~L  257 (765)
                      ++.-+..+--+.|.+|..++  +.++++.+. +|.+.|+.|+.. +.+.-+.-           + -..-++++|  ||+
T Consensus       392 ~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-~~idkS~~-----------~-lItdf~~~~nsr~i  458 (668)
T COG4946         392 GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-RLIDKSEY-----------G-LITDFDWHPNSRWI  458 (668)
T ss_pred             ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-eEeccccc-----------c-eeEEEEEcCCceeE
Confidence            88666666668999999887  678888765 688889999863 22321111           0 123478888  999


Q ss_pred             EEecCC
Q 004255          258 AYASNT  263 (765)
Q Consensus       258 Ayas~~  263 (765)
                      ||+-..
T Consensus       459 AYafP~  464 (668)
T COG4946         459 AYAFPE  464 (668)
T ss_pred             EEecCc
Confidence            998544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.50  E-value=0.16  Score=63.59  Aligned_cols=97  Identities=14%  Similarity=0.230  Sum_probs=63.9

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d--Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ..++||+-+ |....+-..-.+-=.+|+|-|+|+++|+.-..  ...|..|.-      |  |-        .+--+.++
T Consensus       237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr------N--GL--------rhgeF~l~  299 (928)
T PF04762_consen  237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER------N--GL--------RHGEFTLR  299 (928)
T ss_pred             eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec------C--Cc--------EeeeEecC
Confidence            589999965 55433333222223468999999999998762  234555652      2  31        02224554


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      .......|..|+|++|+..||+.-.|. |.+|-...|
T Consensus       300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence            322334699999999999999987655 999998876

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.50  E-value=0.0015  Score=79.70  Aligned_cols=96  Identities=14%  Similarity=0.314  Sum_probs=71.0

Q ss_pred             EECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 004255          354 KDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA  432 (765)
Q Consensus       354 wDl~s~~~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a  432 (765)
                      |.. .|..++++..|...|..++.++. +.+++|||.||+ |||||+.... +.. +      .....+.|..    ...
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~-~~~-~------s~rS~ltys~----~~s 1099 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLE-GEG-G------SARSELTYSP----EGS 1099 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhh-cCc-c------eeeeeEEEec----cCC
Confidence            443 36788999999999999888765 599999999775 9999986421 110 1      0011233332    224


Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       433 ~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      .+.++.+-+.|..+|+++.||.|++.+++.+
T Consensus      1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred             ceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence            5888999999999999999999999999986

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.44  E-value=0.003  Score=71.94  Aligned_cols=115  Identities=14%  Similarity=0.205  Sum_probs=81.0

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      .-.|.=+++..|+-+.-|.-..++|+++..++--.+||+|..+| .+..||-+.-   +.-|  ..+...   .+-. +-
T Consensus       154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g-~VEfwDpR~k---srv~--~l~~~~---~v~s-~p  223 (703)
T KOG2321|consen  154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG-VVEFWDPRDK---SRVG--TLDAAS---SVNS-HP  223 (703)
T ss_pred             CcceEEEEccccccccccccccccceeeeecCccceEEecccCc-eEEEecchhh---hhhe--eeeccc---ccCC-Cc
Confidence            34677789999998888888889999999999999999999866 5999997541   1001  000000   0000 01


Q ss_pred             cccc-ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          428 GITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       428 G~~~-a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      |... ..|++|.|+.||-.+++|+.+|.|.||||.... +.-+..|.
T Consensus       224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-pl~~kdh~  269 (703)
T KOG2321|consen  224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-PLLVKDHG  269 (703)
T ss_pred             cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-ceeecccC
Confidence            2122 259999999999999999999999999998743 33345554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.43  E-value=0.14  Score=52.40  Aligned_cols=94  Identities=18%  Similarity=0.172  Sum_probs=61.2

Q ss_pred             cCCCCeEEEEECCCCcEEEEeccCCCC----------e-EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255          345 MDNAGIVVVKDFVTRAIISQFKAHTSP----------I-SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY  413 (765)
Q Consensus       345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~----------I-saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~  413 (765)
                      +..+|.|..+|+.+|+.+-....+..+          + ..+.++ +| .+..++.+|..+.+ |+.+       |    
T Consensus       128 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~t-------g----  193 (238)
T PF13360_consen  128 GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLAT-------G----  193 (238)
T ss_dssp             EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTT-------T----
T ss_pred             EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCC-------C----
Confidence            344899999999999998887765433          1 233333 55 55555555766777 9865       3    


Q ss_pred             ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                            ..+++..  ..  .+.. ....++..|++++.+++++.||+.+.
T Consensus       194 ------~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  194 ------EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             ------EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred             ------CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence                  3444322  11  1222 25678888888889999999999863

...

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=97.42  E-value=0.0016  Score=73.51  Aligned_cols=104  Identities=13%  Similarity=0.184  Sum_probs=74.5

Q ss_pred             cccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255          335 WKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD  414 (765)
Q Consensus       335 ~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~  414 (765)
                      |.+.+..+.+.+.||.|+||.- +|-...++.....+|.|++|.|+...++-+-. |+ +.|=.+.+.            
T Consensus       112 W~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h-~~IKpL~~n------------  176 (737)
T KOG1524|consen  112 WSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GH-ISIKPLAAN------------  176 (737)
T ss_pred             cCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC-Ce-EEEeecccc------------
Confidence            3333444567889999999984 34333444455679999999999887766654 43 656555431            


Q ss_pred             cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                           ..+.+.+  .|.+.|.++.|++.+..|++|+.|-..+|||-
T Consensus       177 -----~k~i~Wk--AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  177 -----SKIIRWR--AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             -----cceeEEe--ccCcEEEEeecCccccceeecCCceeEEeecc
Confidence                 2334443  24467999999999999999999999999985

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.33  E-value=0.0056  Score=72.95  Aligned_cols=185  Identities=15%  Similarity=0.175  Sum_probs=129.3

Q ss_pred             CCEEEEEECCCCeEEEEEeCCC-CEEEEEecCCeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (765)
                      +..+..+|+++.++.+.....+ .|.=++-|.+.|.+|.. ++|.+-|..+.+..+++.+|..-             ..-
T Consensus       156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-------------iSD  222 (1118)
T KOG1275|consen  156 QEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-------------ISD  222 (1118)
T ss_pred             hhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc-------------eee
Confidence            3578889999999998888765 78888999888888764 57999999999999999988761             223


Q ss_pred             eEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCc
Q 004255          250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV  329 (765)
Q Consensus       250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~  329 (765)
                      |.+..+.|+..+...      |.                                           |             
T Consensus       223 fDv~GNlLitCG~S~------R~-------------------------------------------~-------------  240 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSM------RR-------------------------------------------Y-------------  240 (1118)
T ss_pred             eeccCCeEEEeeccc------cc-------------------------------------------c-------------
Confidence            455556666655320      00                                           0             


Q ss_pred             cCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255          330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGS  408 (765)
Q Consensus       330 s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~s  408 (765)
                                    .-..|-.|+|||+++.+.+.-+.-|.+| ..+.|.|. -+.||.+|..|. ..+-|....      
T Consensus       241 --------------~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~l------  298 (1118)
T KOG1275|consen  241 --------------NLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATL------  298 (1118)
T ss_pred             --------------cccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeecccccc------
Confidence                          0124668999999999888877777777 67889986 456777777676 666663221      


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      +       .....++...  ....-|..+.||+.|+.||.+..+|.||+|.-.+
T Consensus       299 s-------NP~~~~~~v~--p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  299 S-------NPPAGVKMVN--PNGSGISAFDISSNGDALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             C-------CCccceeEEc--cCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence            0       0001111111  1112388999999999999999999999998443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.32  E-value=0.00069  Score=85.00  Aligned_cols=88  Identities=20%  Similarity=0.332  Sum_probs=65.3

Q ss_pred             CCCeEEEEECCC--C-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          347 NAGIVVVKDFVT--R-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       347 ~dG~V~IwDl~s--~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      .++.+.+||..-  + ..+.  .+|.+.+++++|-|.-++|.||+.+|. |.|||++..                 +..+
T Consensus      2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqr-----------------ql~h 2372 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQR-----------------QLRH 2372 (2439)
T ss_pred             CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHH-----------------HHHH
Confidence            356788898542  2 2344  899999999999999999999999886 999999541                 1111


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      .+         +.  +. .-.++++++.+|+++||+++.++-.
T Consensus      2373 ~~---------~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2373 TF---------QA--LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             Hh---------hh--hh-hhheeeccCcccceEEEEccccchh
Confidence            11         11  23 4468999999999999999987543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.32  E-value=0.0014  Score=70.23  Aligned_cols=89  Identities=17%  Similarity=0.285  Sum_probs=69.6

Q ss_pred             cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255          345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (765)
Q Consensus       345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~  424 (765)
                      +..++.|.+|++...+--..+..-..++++++|||||+.+.+-|+-+-.|.||.+.+.                  ..+-
T Consensus        67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~------------------~~~~  128 (447)
T KOG4497|consen   67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ------------------KGYL  128 (447)
T ss_pred             eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc------------------eeEE
Confidence            3568899999999998888898888999999999999777666665667999999651                  2233


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCC
Q 004255          425 LHRGITSATIQDICFSHYSQWIAIVSSKG  453 (765)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~Las~S~dg  453 (765)
                      +..  ..+.+..++|+|||++.|..+.+.
T Consensus       129 ~~~--pK~~~kg~~f~~dg~f~ai~sRrD  155 (447)
T KOG4497|consen  129 LPH--PKTNVKGYAFHPDGQFCAILSRRD  155 (447)
T ss_pred             ecc--cccCceeEEECCCCceeeeeeccc
Confidence            321  122368899999999999998763

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=97.30  E-value=0.0041  Score=66.57  Aligned_cols=100  Identities=16%  Similarity=0.174  Sum_probs=69.0

Q ss_pred             CCCCeEEEEECCC-C--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          346 DNAGIVVVKDFVT-R--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       346 ~~dG~V~IwDl~s-~--~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      ..|....||.... +  +..-.|..|.....++.|+|.++++|++|. ++.|-||=.+..          .+|=-+ .|+
T Consensus        74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg-ar~isVcy~E~E----------NdWWVs-Khi  141 (361)
T KOG1523|consen   74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG-ARLISVCYYEQE----------NDWWVS-KHI  141 (361)
T ss_pred             cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccC-ccEEEEEEEecc----------cceehh-hhh
Confidence            3444445555422 2  233345567788999999999999999998 888999876431          122100 122


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      .+-    ....|.+++|.|++-.||+||.|+.++||..-
T Consensus       142 kkP----irStv~sldWhpnnVLlaaGs~D~k~rVfSay  176 (361)
T KOG1523|consen  142 KKP----IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY  176 (361)
T ss_pred             CCc----cccceeeeeccCCcceecccccCcceeEEEEe
Confidence            111    23469999999999999999999999999753

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.28  E-value=0.02  Score=65.16  Aligned_cols=290  Identities=12%  Similarity=0.161  Sum_probs=152.1

Q ss_pred             CCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      .+..|++=-..||++|--++-+.+++..   .-.|.++.++|+             ...|+.-+....  .         
T Consensus       221 ~GTYL~t~Hk~GI~lWGG~~f~r~~RF~---Hp~Vq~idfSP~-------------EkYLVT~s~~p~--~---------  273 (698)
T KOG2314|consen  221 KGTYLVTFHKQGIALWGGESFDRIQRFY---HPGVQFIDFSPN-------------EKYLVTYSPEPI--I---------  273 (698)
T ss_pred             CceEEEEEeccceeeecCccHHHHHhcc---CCCceeeecCCc-------------cceEEEecCCcc--c---------
Confidence            5778888888899999876544443322   245999999986             125543221110  0         


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CC-----CEEEEEecCCeEEEEeCCeEEEEECCCCceeEEE
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RS-----SVCMVRCSPRIVAVGLATQIYCFDALTLENKFSV  227 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s-----~V~sV~~s~~~LaV~~~~~I~iwD~~t~~~l~tl  227 (765)
                        +..+..         -+..++|||++||.+.+++.. .+     ++..=.++.+++|--..+.|.||+...+.++.  
T Consensus       274 --~~~~d~---------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld--  340 (698)
T KOG2314|consen  274 --VEEDDN---------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD--  340 (698)
T ss_pred             --cCcccC---------CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec--
Confidence              000111         246899999999999988864 22     44455566789997777899999987754321  


Q ss_pred             EecCCcccCCCCccccccccceeEEcc--ceEEEecCC--ceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhh
Q 004255          228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK  303 (765)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~--~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k  303 (765)
                       .-+..      .+    +..-+.++|  ..|||=...  .+.+..+.+             .-|+...+  |  ....-
T Consensus       341 -~Kslk------i~----gIr~FswsP~~~llAYwtpe~~~~parvtL~-------------evPs~~~i--R--t~nlf  392 (698)
T KOG2314|consen  341 -KKSLK------IS----GIRDFSWSPTSNLLAYWTPETNNIPARVTLM-------------EVPSKREI--R--TKNLF  392 (698)
T ss_pred             -ccccC------Cc----cccCcccCCCcceEEEEcccccCCcceEEEE-------------ecCcccee--e--eccce
Confidence             11110      00    224477888  889984321  100000000             00110000  0  00000


Q ss_pred             hhhcccceeecccccccCCCCCCCCccCCCcccccccccc-ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC
Q 004255          304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA-DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT  382 (765)
Q Consensus       304 ~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~-~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~  382 (765)
                      +++..   +|  |++.     ++--+.+..    ...+-. ..+.--.+.|+-+....+...--.-..+|.+.+|.|.|.
T Consensus       393 nVsDc---kL--hWQk-----~gdyLcvkv----dR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gd  458 (698)
T KOG2314|consen  393 NVSDC---KL--HWQK-----SGDYLCVKV----DRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGD  458 (698)
T ss_pred             eeecc---EE--Eecc-----CCcEEEEEE----EeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCC
Confidence            00000   00  0000     000000000    000000 011112455666665543333233457889999999999


Q ss_pred             EEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE---eCCCcEEE
Q 004255          383 LLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV---SSKGTCHV  457 (765)
Q Consensus       383 lLATaS~d--Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~---S~dgTVhI  457 (765)
                      .+|+-+..  ..++.+|-+.+.      +       ....++.+|..    .....+.|||.|+|++++   |..|++..
T Consensus       459 kF~vi~g~~~k~tvsfY~~e~~------~-------~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l~F  521 (698)
T KOG2314|consen  459 KFAVISGNTVKNTVSFYAVETN------I-------KKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDLEF  521 (698)
T ss_pred             eEEEEEccccccceeEEEeecC------C-------Cchhhhhhhcc----cccceEEEcCCCcEEEEEEecccccceEE
Confidence            99887653  345778877531      1       01123444432    124679999999999877   45688999


Q ss_pred             EeCCC
Q 004255          458 FVLSP  462 (765)
Q Consensus       458 wdl~~  462 (765)
                      +|..-
T Consensus       522 ~D~~~  526 (698)
T KOG2314|consen  522 YDTDY  526 (698)
T ss_pred             Eecch
Confidence            99874

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.24  E-value=0.0022  Score=69.88  Aligned_cols=105  Identities=13%  Similarity=0.065  Sum_probs=82.9

Q ss_pred             ccccCCCCeEEEEECCC------CcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 004255          342 GADMDNAGIVVVKDFVT------RAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD  414 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s------~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~  414 (765)
                      +++++.|-.++||.+..      .+++.... .|.+.|.||+|+-..++|.++..+|+ +.+.|+.+.            
T Consensus        71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-VI~HDiEt~------------  137 (609)
T KOG4227|consen   71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-VIKHDIETK------------  137 (609)
T ss_pred             EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-eEeeecccc------------
Confidence            45778899999999753      35555443 46689999999999999999999886 667898652            


Q ss_pred             cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                           +.+|.+......+.|+.+.-+|-.+.|++++.++-|-+||+....
T Consensus       138 -----qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  138 -----QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             -----eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence                 456666433334579999999999999999999999999997654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.08  E-value=0.0014  Score=71.77  Aligned_cols=99  Identities=12%  Similarity=0.105  Sum_probs=71.6

Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ....+.+|....+.. ..+-+|-+-++.++|+||++++.||..|++ |||=.. |       +.         .-+..+.
T Consensus       130 D~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~y-p-------a~---------f~Iesfc  190 (390)
T KOG3914|consen  130 DVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRY-P-------AT---------FVIESFC  190 (390)
T ss_pred             CceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCce-EEEEec-C-------cc---------cchhhhc
Confidence            345566666655443 445699999999999999999999999776 898665 2       10         1222333


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      -||+ .-|..++.-++ +.|+++|.|+|+++||+......
T Consensus       191 lGH~-eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  191 LGHK-EFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             cccH-hheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence            4544 34777887754 56999999999999999987655

>smart00320 WD40 WD40 repeats

Probab=97.08  E-value=0.0014  Score=45.01  Aligned_cols=39  Identities=31%  Similarity=0.681  Sum_probs=33.7

Q ss_pred             CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 004255          359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR  398 (765)
Q Consensus       359 ~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWd  398 (765)
                      ++.+..+.+|...|.+++|++++.++++++.|+ .+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~-~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDG-TIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCC-eEEEcC
Confidence            345677889999999999999999999999966 499996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.06  E-value=0.18  Score=55.14  Aligned_cols=110  Identities=21%  Similarity=0.346  Sum_probs=73.0

Q ss_pred             CCCeEEEEECCC-CcE--EEEeccCCCC----------eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255          347 NAGIVVVKDFVT-RAI--ISQFKAHTSP----------ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY  413 (765)
Q Consensus       347 ~dG~V~IwDl~s-~~~--i~~~~aH~~~----------IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~  413 (765)
                      ..|.|.++-+.. |.+  +..+-.|+++          +-+..|+|+|++|++.+..-..|.+|++..       |.   
T Consensus       109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-------g~---  178 (346)
T COG2706         109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-------GK---  178 (346)
T ss_pred             cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc-------Cc---
Confidence            347788887754 322  2233345555          788999999999999987444699999964       31   


Q ss_pred             ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCc-ccccc
Q 004255          414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDS-GFQTL  472 (765)
Q Consensus       414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg~~-~~~~h  472 (765)
                       +  .....+.++.|.   --..|+|+|++++..+.+ .++||-+|..++..+.. .++.+
T Consensus       179 -L--~~~~~~~v~~G~---GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i  233 (346)
T COG2706         179 -L--TPADPAEVKPGA---GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI  233 (346)
T ss_pred             -c--ccccccccCCCC---CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence             0  001223334443   246799999999976665 49999999999875543 34444

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.24  Score=56.87  Aligned_cols=99  Identities=13%  Similarity=0.244  Sum_probs=73.2

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE-EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA-SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATa-S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      .++.+.++....++..+. -.+||.++.|+|+|+-++.+ +--=..+-|||++        |          ..++.+-.
T Consensus       251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--------~----------~~v~df~e  311 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--------G----------KPVFDFPE  311 (566)
T ss_pred             ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--------C----------CEeEeCCC
Confidence            367788887545555553 36899999999999987654 2223458899984        3          47788865


Q ss_pred             ccccccEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCCCCcccc
Q 004255          428 GITSATIQDICFSHYSQWIAIVSS---KGTCHVFVLSPFGGDSGFQ  470 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~---dgTVhIwdl~~~gg~~~~~  470 (765)
                      |..    .++-|+|.|++|+.++.   .|.+-|||+..++....+.
T Consensus       312 gpR----N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~  353 (566)
T KOG2315|consen  312 GPR----NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK  353 (566)
T ss_pred             CCc----cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence            543    45889999999999986   4789999999887765544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.01  E-value=0.097  Score=59.77  Aligned_cols=94  Identities=18%  Similarity=0.205  Sum_probs=53.6

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE--eCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF--RIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVW--di~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ..|.++|+.+++. ..+..+........|+|||+.|+-.|..+..-.||  |+..       |.        .+++. . 
T Consensus       257 ~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-------g~--------~~rlt-~-  318 (419)
T PRK04043        257 PDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-------GS--------VEQVV-F-  318 (419)
T ss_pred             cEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------eEeCc-c-
Confidence            4677888877653 44444433233458999999888777544334444  5432       21        11221 1 


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSK-------GTCHVFVLSPFGG  465 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~d-------gTVhIwdl~~~gg  465 (765)
                      .|.     ....|||||++|+..+..       +..+||-++..++
T Consensus       319 ~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g  359 (419)
T PRK04043        319 HGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD  359 (419)
T ss_pred             CCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence            122     124899999999888765       3245555544444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.01  E-value=0.38  Score=53.50  Aligned_cols=57  Identities=16%  Similarity=0.023  Sum_probs=41.6

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEE-EecCCeEEE-EeCCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMV-RCSPRIVAV-GLATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV-~~s~~~LaV-~~~~~I~iwD~~t~~~l~tl~t  229 (765)
                      +.|.-+|.++|+.+....+...+.+. ....+.|.+ ..++.|++||+.+++.++....
T Consensus       115 g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       115 GEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             CEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence            58999999999999888776655321 122334444 4567899999999998888764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.00  E-value=0.0046  Score=71.04  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=66.6

Q ss_pred             EEEECCCCcE--EEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          352 VVKDFVTRAI--ISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       352 ~IwDl~s~~~--i~~~-~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      .+|++...+.  +... -.+.+.|.+++++|+.+.|+.|..||. |++||...       +            +..+.+.
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~-------~------------~t~~~ka  298 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTR-------G------------VTLLAKA  298 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCC-------C------------eeeeeee
Confidence            3667655432  2111 257788999999999999999999775 99999854       2            1111111


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                        ......++|+|||..+++++..|.+.+||+.-.
T Consensus       299 --~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  299 --EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             --cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence              124688999999999999999999999998753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.00  E-value=0.62  Score=51.80  Aligned_cols=91  Identities=15%  Similarity=0.157  Sum_probs=55.9

Q ss_pred             cCCCCeEEEEECCCCcEEEEeccCCC-CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          345 MDNAGIVVVKDFVTRAIISQFKAHTS-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       345 ~~~dG~V~IwDl~s~~~i~~~~aH~~-~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      +..+|.+..+|..+++.+-....... ...+...  .|.+|++++.+|. +.+||..+       |          +.++
T Consensus       285 ~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~t-------G----------~~~~  344 (377)
T TIGR03300       285 TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSRED-------G----------SFVA  344 (377)
T ss_pred             ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCC-------C----------CEEE
Confidence            45689999999999987765532111 1222222  3668888888775 89999755       4          4566


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF  458 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIw  458 (765)
                      ++.-+.. ....+.++. |+ .|..++.||+++.|
T Consensus       345 ~~~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       345 RLKTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEcCCC-ccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            6543221 111222333 33 58889999998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.95  E-value=0.011  Score=65.61  Aligned_cols=97  Identities=9%  Similarity=0.025  Sum_probs=73.8

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~---------dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~  419 (765)
                      |.|.|.|..+++.+.++..-..|-- + +||||+.|..|..         +...|.|||+.+.                 
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-----------------   87 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-----------------   87 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-----------------
Confidence            8999999999999999986555543 4 9999999999888         6778999999762                 


Q ss_pred             eEEEEEecccc-----cccEEEEEEccCCCEEEEEe-C-CCcEEEEeCCCCC
Q 004255          420 VHLYKLHRGIT-----SATIQDICFSHYSQWIAIVS-S-KGTCHVFVLSPFG  464 (765)
Q Consensus       420 ~~l~~l~rG~~-----~a~I~slaFSpDg~~Las~S-~-dgTVhIwdl~~~g  464 (765)
                      ..+.++.-|..     ...-..+++||||++|.+.. . +..|-|.|+....
T Consensus        88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k  139 (352)
T TIGR02658        88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA  139 (352)
T ss_pred             cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc
Confidence            34444442211     11234689999999999876 3 6889999998754

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=96.93  E-value=0.0051  Score=65.26  Aligned_cols=105  Identities=15%  Similarity=0.135  Sum_probs=73.8

Q ss_pred             ccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255          344 DMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~--i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~  420 (765)
                      ....+|.+.+-+......  ++..++|.-++....|+.. -+++.||++|+. +.-||++-.      +          .
T Consensus       138 vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p------~----------~  200 (339)
T KOG0280|consen  138 VSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP------K----------T  200 (339)
T ss_pred             EEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC------c----------c
Confidence            344566666555554443  3478999999999999863 468889998665 999999721      2          2


Q ss_pred             EEEEEecccccccEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          421 HLYKLHRGITSATIQDICFS-HYSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFS-pDg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      .++.-.+- +..-|.+|.=| |+..+|++|+-|.+|++||....+.+
T Consensus       201 ~i~~n~kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  201 FIWHNSKV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             eeeeccee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence            33321111 23458888777 56889999999999999999876654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.84  E-value=0.021  Score=67.18  Aligned_cols=104  Identities=23%  Similarity=0.303  Sum_probs=76.3

Q ss_pred             cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC------CC---EEEEEeCCCCcccCCCCCCcc
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY------GN---NINIFRIMPSCMRSGSGNHKY  413 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d------Gt---~IrVWdi~~~~~~~~sG~~~~  413 (765)
                      +-|.+.|+|.|+|+.++.+-+.|..|++.|.+|.|--... |+|.+..      |.   .+.|=|+.+       |.   
T Consensus       441 AvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrt-------Gl---  509 (1062)
T KOG1912|consen  441 AVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRT-------GL---  509 (1062)
T ss_pred             EeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEccc-------cc---
Confidence            3577899999999999999999999999999999976544 5555431      11   133445544       31   


Q ss_pred             ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                            .+-++-.++.....|..|.-|.-|+||+..=.|.-+.|||+...
T Consensus       510 ------sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  510 ------SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             ------ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence                  11111124556678999999999999999999999999999653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=96.84  E-value=0.0066  Score=65.07  Aligned_cols=102  Identities=16%  Similarity=0.149  Sum_probs=78.3

Q ss_pred             ccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255          344 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~---~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~  420 (765)
                      .+.+...|.||.....   +..++|..|...|+.+.|+|.++.|+||+.|.+ -.||.....      |    .|.    
T Consensus        27 v~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-ayVw~~~~~------~----~Wk----   91 (361)
T KOG1523|consen   27 VSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-AYVWTQPSG------G----TWK----   91 (361)
T ss_pred             eccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-ccccccCCC------C----eec----
Confidence            3455678899987654   467889999999999999999999999999665 899987321      2    132    


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      +...|.|-  +...+++.|+|.++.+|++|.-..|-||-.+.
T Consensus        92 ptlvLlRi--NrAAt~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   92 PTLVLLRI--NRAATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             cceeEEEe--ccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence            22334342  23478999999999999999999999987654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.67  E-value=0.1  Score=55.95  Aligned_cols=81  Identities=15%  Similarity=0.199  Sum_probs=54.9

Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-----c-----ccccccE
Q 004255          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-----R-----GITSATI  434 (765)
Q Consensus       365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-----r-----G~~~a~I  434 (765)
                      |.+-.+.|+.+.|+++|+++++-+-  -+++|||+.-.      .          .++.+..     +     -..+..|
T Consensus       276 f~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~------k----------~pikTi~~h~~l~~~l~d~YEnDai  337 (460)
T COG5170         276 FEEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMA------K----------NPIKTIPMHCDLMDELNDVYENDAI  337 (460)
T ss_pred             HHHHhhhhcceEEcCCCcEEEEecc--ceEEEEecccc------c----------CCceeechHHHHHHHHHhhhhccce
Confidence            3444578999999999999987665  46999998542      0          1222110     0     0001112


Q ss_pred             ---EEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          435 ---QDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       435 ---~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                         ..+.||-|.+.+.+||-.+..-||.....
T Consensus       338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss  369 (460)
T COG5170         338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS  369 (460)
T ss_pred             eeeEEEEecCCcccccccccccceeeeccccC
Confidence               35899999999999999999999985543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.57  E-value=0.21  Score=56.74  Aligned_cols=91  Identities=14%  Similarity=0.246  Sum_probs=63.8

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE-cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS-~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      ..+.|+++....+... ..-.+||...+|+|+++.+++.+ .....+.+||+..                  ...+.+-.
T Consensus       255 snLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~------------------Nl~~~~Pe  315 (561)
T COG5354         255 SNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG------------------NLRFYFPE  315 (561)
T ss_pred             ceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeeccccc------------------ceEEecCC
Confidence            4688888875443333 25689999999999999999988 5566789999853                  13333322


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCC---CcEEEEeCCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP  462 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~d---gTVhIwdl~~  462 (765)
                      +.    =..+.|||.++|++.++.|   |.+-|||...
T Consensus       316 ~~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~~  349 (561)
T COG5354         316 QK----RNTIFFSPHERYILFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             cc----cccccccCcccEEEEecCCccccceEEeccCC
Confidence            21    1347799999999888766   4588887653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.56  E-value=0.049  Score=65.30  Aligned_cols=101  Identities=11%  Similarity=0.109  Sum_probs=68.6

Q ss_pred             CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (765)
Q Consensus        75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~  154 (765)
                      .+++..|-++.+-.+|+. .....++..-..+.|..|...              +| +|  .+|+.              
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~-~~~e~r~~~v~a~~v~imR~N--------------nr-~l--f~G~t--------------  195 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLN-TEKETRTTNVSASGVTIMRYN--------------NR-NL--FCGDT--------------  195 (1118)
T ss_pred             cceeecchhhheeeeecc-cceeeeeeeccCCceEEEEec--------------Cc-EE--Eeecc--------------
Confidence            345555567778888884 444445555555557776643              22 33  23321              


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEeC-C---------eEEEEECCCCce
Q 004255          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-T---------QIYCFDALTLEN  223 (765)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~~-~---------~I~iwD~~t~~~  223 (765)
                                       -++|.+-|.++.+.+|++..+ +.|.++...+++|+++.. .         -|++||++.++.
T Consensus       196 -----------------~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra  258 (1118)
T KOG1275|consen  196 -----------------RGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA  258 (1118)
T ss_pred             -----------------cceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence                             268999999999999999865 689999999988876542 1         189999988764


Q ss_pred             e
Q 004255          224 K  224 (765)
Q Consensus       224 l  224 (765)
                      +
T Consensus       259 l  259 (1118)
T KOG1275|consen  259 L  259 (1118)
T ss_pred             c
Confidence            3

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.52  E-value=0.16  Score=55.51  Aligned_cols=97  Identities=12%  Similarity=0.143  Sum_probs=59.2

Q ss_pred             CeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          349 GIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       349 G~V~IwDl~s~~-~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      +.|.+|++...+ .+.. .-+..++..++....+.+++.|+.... +.++.....      +          ..+..+.|
T Consensus       107 ~~l~v~~l~~~~~l~~~-~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~~~~~~------~----------~~l~~va~  168 (321)
T PF03178_consen  107 NKLYVYDLDNSKTLLKK-AFYDSPFYITSLSVFKNYILVGDAMKS-VSLLRYDEE------N----------NKLILVAR  168 (321)
T ss_dssp             TEEEEEEEETTSSEEEE-EEE-BSSSEEEEEEETTEEEEEESSSS-EEEEEEETT------T----------E-EEEEEE
T ss_pred             CEEEEEEccCcccchhh-heecceEEEEEEeccccEEEEEEcccC-EEEEEEEcc------C----------CEEEEEEe
Confidence            467777777666 3222 122222233334444668988887555 777644221      1          34555555


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ......++++.|-.|++.++++..+|.++++..++.
T Consensus       169 d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  169 DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred             cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence            444456899999877789999999999999998753

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=96.49  E-value=0.017  Score=64.89  Aligned_cols=57  Identities=16%  Similarity=0.244  Sum_probs=50.2

Q ss_pred             ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                      +.+++..|.|-|||-.+++.+.-++|-..-|+||.=+|---+|||++. ++-||||--
T Consensus       409 VvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGi-d~DVKIWTP  465 (559)
T KOG1334|consen  409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGI-DHDVKIWTP  465 (559)
T ss_pred             EEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCC-ccceeeecC
Confidence            346778899999999999999988887779999999999999999999 567999974

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.42  E-value=0.035  Score=62.32  Aligned_cols=98  Identities=21%  Similarity=0.272  Sum_probs=73.6

Q ss_pred             ccCCCC-eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          344 DMDNAG-IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       344 ~~~~dG-~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      -+..|| .+-|+|..+++. ..+...-+.|-+|+.+|||++++.|-... .|.|.|+.+       |.         .++
T Consensus       376 igt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~-el~vididn-------gn---------v~~  437 (668)
T COG4946         376 IGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRF-ELWVIDIDN-------GN---------VRL  437 (668)
T ss_pred             EeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCce-EEEEEEecC-------CC---------eeE
Confidence            456777 799999988764 55666778999999999999999887644 477778855       31         222


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCC----cEEEEeCCC
Q 004255          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSP  462 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dg----TVhIwdl~~  462 (765)
                      .+-.   ..+-|++++|||+++|||-+=-+|    .|||||+..
T Consensus       438 idkS---~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         438 IDKS---EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             eccc---ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            2211   124699999999999999987765    589999875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.38  E-value=0.27  Score=52.44  Aligned_cols=96  Identities=15%  Similarity=0.249  Sum_probs=57.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCC----------EEEEEeCCCCc---c-cCCCCCCccccCC---cceEEEE----Ee
Q 004255          368 HTSPISALCFDPSGTLLVTASVYGN----------NINIFRIMPSC---M-RSGSGNHKYDWNS---SHVHLYK----LH  426 (765)
Q Consensus       368 H~~~IsaLaFSpdG~lLATaS~dGt----------~IrVWdi~~~~---~-~~~sG~~~~~~~~---s~~~l~~----l~  426 (765)
                      +...|.++.|+|.-++|..|+....          -+..|.+....   . ...... ......   ...++..    .+
T Consensus       146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~-~~~~~~~~~~~~~~~~~~~fs~  224 (282)
T PF15492_consen  146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED-DITASSKRRGLLRIPSFKFFSR  224 (282)
T ss_pred             CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc-cccccccccceeeccceeeeec
Confidence            4779999999999888877654211          25567664321   0 000000 000000   0011111    12


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      .+.....|..|+.||||+.||+...+|.+-||++....
T Consensus       225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            23334569999999999999999999999999997644

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.36  E-value=0.7  Score=49.38  Aligned_cols=32  Identities=22%  Similarity=0.504  Sum_probs=28.7

Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                      .-...|..|+.||||++||+....|. |-||++
T Consensus       227 ~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~i  258 (282)
T PF15492_consen  227 QEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEI  258 (282)
T ss_pred             cCCCceEEEEECCCCCEEEEEEcCCe-EEEEec
Confidence            34678999999999999999999776 999999

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.0095  Score=65.56  Aligned_cols=96  Identities=25%  Similarity=0.266  Sum_probs=75.4

Q ss_pred             EEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 004255          351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (765)
Q Consensus       351 V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~  429 (765)
                      |++.+-.+.+.+.-+..|..-|..|+|||... +|..+|. |.+|+|+|+.+.+.               ...|...   
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl-~nkiki~dlet~~~---------------vssy~a~---  235 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASL-GNKIKIMDLETSCV---------------VSSYIAY---  235 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeecc-CceEEEEeccccee---------------eeheecc---
Confidence            77777777777777788999999999999888 7778888 78899999976311               2233332   


Q ss_pred             ccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCc
Q 004255          430 TSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS  467 (765)
Q Consensus       430 ~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg~~  467 (765)
                        ..+++++|.-|. .+|.+|-.+|.|.|||+....++.
T Consensus       236 --~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~  272 (463)
T KOG1645|consen  236 --NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL  272 (463)
T ss_pred             --CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence              359999999776 678888899999999998776654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.21  E-value=0.34  Score=55.16  Aligned_cols=155  Identities=16%  Similarity=0.251  Sum_probs=98.1

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~---~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~  246 (765)
                      -.++.|+++....+-..+...++|+++.++|  +.+++..   ...+.+||+.+. ..+.+...+               
T Consensus       254 esnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~---------------  317 (561)
T COG5354         254 ESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQK---------------  317 (561)
T ss_pred             cceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcc---------------
Confidence            3689999998555554556678999999977  4444332   346899998764 333332211               


Q ss_pred             cceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255          247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (765)
Q Consensus       247 ~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~  324 (765)
                      .+-+-|+|  ||+-+++-+                                                             
T Consensus       318 rNT~~fsp~~r~il~agF~-------------------------------------------------------------  336 (561)
T COG5354         318 RNTIFFSPHERYILFAGFD-------------------------------------------------------------  336 (561)
T ss_pred             cccccccCcccEEEEecCC-------------------------------------------------------------
Confidence            12345666  666665522                                                             


Q ss_pred             CCCCccCCCccccccccccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEc-----CCCEEEEEe
Q 004255          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASV-----YGNNINIFR  398 (765)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~-~i~~~~aH~~~IsaLaFSpdG~lLATaS~-----dGt~IrVWd  398 (765)
                                           ..-|.+.|||....- ++..|.+-  ..+.+.|+|||.++.++-.     .|..|+|||
T Consensus       337 ---------------------nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~  393 (561)
T COG5354         337 ---------------------NLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD  393 (561)
T ss_pred             ---------------------ccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence                                 123567778876654 33366654  2345789999999887643     255799999


Q ss_pred             CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 004255          399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG  453 (765)
Q Consensus       399 i~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg  453 (765)
                      +.        |          ...++         .+.+.|.|-|++..+.|.+.
T Consensus       394 v~--------g----------~~~fe---------l~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         394 VY--------G----------AKVFE---------LTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ec--------C----------chhhh---------hhhccccCCcccceeeccCC
Confidence            83        3          12222         34578899899988887766

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.19  E-value=2.5  Score=46.07  Aligned_cols=50  Identities=10%  Similarity=0.195  Sum_probs=40.6

Q ss_pred             CEEEEEECCCC-------eEEEEEeCCCCEEEEEecCCeEEEEeCCeEEEEECCCCc
Q 004255          173 TAVRFYSFQSH-------CYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLE  222 (765)
Q Consensus       173 ~tV~lWdlktg-------~~v~tL~~~s~V~sV~~s~~~LaV~~~~~I~iwD~~t~~  222 (765)
                      +.|.++++...       +.++..+++++|++|..-...|+++..++|++|++...+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~  118 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK  118 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence            78999999884       455666788999999866766888888999999988776

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4415 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.0037  Score=62.01  Aligned_cols=52  Identities=21%  Similarity=0.362  Sum_probs=43.0

Q ss_pred             cccccceecccccccCCCCccccceeEeeeeeEEeccCC-ccccccceeEEEEcCC
Q 004255          666 LDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDS  720 (765)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~-~~~w~~~~~~f~~~~~  720 (765)
                      .|+..+++++...  .+...+|+..| |+.+|+.+|.++ ..|||.|||.|+.+..
T Consensus         6 gPi~~~~s~dsla--adh~GdEDeeW-l~hVEi~Th~gPHRriWmGPQFef~eih~   58 (247)
T KOG4415|consen    6 GPIMAFASVDSLA--ADHIGDEDEEW-LPHVEIRTHLGPHRRIWMGPQFEFFEIHE   58 (247)
T ss_pred             Cceeeeeeccccc--ccccCcccccc-ccceEEEeccCccceeeecCceeEEEecC
Confidence            5676667766533  26678999999 999999999998 5999999999998876

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.04  E-value=3.1  Score=52.35  Aligned_cols=77  Identities=8%  Similarity=0.223  Sum_probs=50.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC-CCE
Q 004255          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY-SQW  445 (765)
Q Consensus       367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD-g~~  445 (765)
                      .....|..|+||+|++.||..-. +. |.+|-...+           .|    -..++++-.. ...+..+.|+|. ...
T Consensus       302 ~~~~~v~~l~Wn~ds~iLAv~~~-~~-vqLWt~~NY-----------HW----YLKqei~~~~-~~~~~~~~Wdpe~p~~  363 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSEILAVWLE-DR-VQLWTRSNY-----------HW----YLKQEIRFSS-SESVNFVKWDPEKPLR  363 (928)
T ss_pred             CCCceeeEEEECCCCCEEEEEec-CC-ceEEEeeCC-----------EE----EEEEEEEccC-CCCCCceEECCCCCCE
Confidence            34567899999999999999775 44 999987431           11    1122333211 123445999985 466


Q ss_pred             EEEEeCCCcEEEEeCC
Q 004255          446 IAIVSSKGTCHVFVLS  461 (765)
Q Consensus       446 Las~S~dgTVhIwdl~  461 (765)
                      |...+.+|.+..++..
T Consensus       364 L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  364 LHVLTSNGQYEIYDFA  379 (928)
T ss_pred             EEEEecCCcEEEEEEE
Confidence            8888887887665543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.95  E-value=0.0054  Score=72.69  Aligned_cols=122  Identities=16%  Similarity=0.122  Sum_probs=77.5

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      +.++.+...++.|--       .-+-|++|.-.| +++|++. +|...+-++.|..+|..|+=.-             .+
T Consensus      1097 frd~~~~fTc~afs~-------~~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~-------------dg 1155 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSG-------GTNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSV-------------DG 1155 (1516)
T ss_pred             hhccccceeeEEeec-------CCceEEeeeccceEEEEEcc-CccccccccccccccccccccC-------------Cc
Confidence            444555555555532       246789998877 9999994 6878888999999999887331             12


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-CCeEEEEEeCCCCEEEEEecC---CeEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-SHCYEHVLRFRSSVCMVRCSP---RIVA  206 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk-tg~~v~tL~~~s~V~sV~~s~---~~La  206 (765)
                      .+++..+.                      |         +.--..+|++. ++..+|++.-..   +|.|+.   ..++
T Consensus      1156 s~~Ltsss----------------------~---------S~PlsaLW~~~s~~~~~Hsf~ed~---~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1156 STQLTSSS----------------------S---------SSPLSALWDASSTGGPRHSFDEDK---AVKFSNSLQFRAL 1201 (1516)
T ss_pred             ceeeeecc----------------------c---------cCchHHHhccccccCccccccccc---eeehhhhHHHHHh
Confidence            24443111                      0         01135689986 567777775443   455554   2333


Q ss_pred             EEeCCeEEEEECCCCceeEEEE
Q 004255          207 VGLATQIYCFDALTLENKFSVL  228 (765)
Q Consensus       207 V~~~~~I~iwD~~t~~~l~tl~  228 (765)
                      ....+...+||+.|+..+.++.
T Consensus      1202 gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred             cccccceEEEecccCcHHHHhc
Confidence            3444679999999987666543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.84  E-value=0.059  Score=63.27  Aligned_cols=105  Identities=14%  Similarity=0.240  Sum_probs=68.8

Q ss_pred             CCeEEEEEecCcEEEEEccCCCcceEeeeeccC-CEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDG-PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg-~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .++-++++.+-|+-|-|+++..+-..-|..-+. .|..+++.|-|           .+|.-+| ..              
T Consensus        35 ~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~-----------a~~~wiV-st--------------   88 (1081)
T KOG0309|consen   35 SGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHP-----------AKPYWIV-ST--------------   88 (1081)
T ss_pred             ccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCC-----------CCceeEE-ec--------------
Confidence            466788888889999999887766555544443 37788888754           3455443 32              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCC--CeEEEEEe-CC-CCEEEEEecC---CeEEEEeC-CeEEEEECCCCc
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQS--HCYEHVLR-FR-SSVCMVRCSP---RIVAVGLA-TQIYCFDALTLE  222 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt--g~~v~tL~-~~-s~V~sV~~s~---~~LaV~~~-~~I~iwD~~t~~  222 (765)
                                        ++.+-.+|++..  .+.|.-+. .+ ..|.++.+++   .+||.+.. ..+++||++...
T Consensus        89 ------------------s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   89 ------------------SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH  148 (1081)
T ss_pred             ------------------CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence                              123556888853  23333222 23 4789999987   58887664 469999987653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.53  E-value=4.7  Score=44.05  Aligned_cols=71  Identities=18%  Similarity=0.303  Sum_probs=48.3

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI  448 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las  448 (765)
                      ...|-+|+|+++|.++|..|-.|+.+-+||..+       |          ..+...    .-..++.++-.+++ |+++
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-------g----------~~~~~~----~l~D~cGva~~~~~-f~~s  273 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-------G----------RLLGSV----PLPDACGVAPTDDG-FLVS  273 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-------C----------CEeecc----ccCceeeeeecCCc-eEEe
Confidence            467899999999999988888899999999865       3          222221    11346777777777 5555


Q ss_pred             EeCCCcEEEEeCCCCC
Q 004255          449 VSSKGTCHVFVLSPFG  464 (765)
Q Consensus       449 ~S~dgTVhIwdl~~~g  464 (765)
                      ++ .|.  ++.+...+
T Consensus       274 sG-~G~--~~~~~~~~  286 (305)
T PF07433_consen  274 SG-QGQ--LIRLSPDG  286 (305)
T ss_pred             CC-Ccc--EEEccCcc
Confidence            44 443  55555543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.41  E-value=0.015  Score=65.91  Aligned_cols=85  Identities=20%  Similarity=0.309  Sum_probs=61.8

Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 004255          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (765)
Q Consensus       361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (765)
                      .+..|.+|+..|.+++-=.+.+-+++||. ++++++|.+++.-  +.-|        ...+.+++..  +...|.++.|=
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASk-DKTVKLWSik~Eg--D~~~--------tsaCQfTY~a--Hkk~i~~igfL  793 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASK-DKTVKLWSIKPEG--DEIG--------TSACQFTYQA--HKKPIHDIGFL  793 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccC-CceEEEEEecccc--Cccc--------cceeeeEhhh--ccCcccceeee
Confidence            35678899999998876667778889999 5679999998741  1111        1124444432  34579999999


Q ss_pred             cCCCEEEEEeCCCcEEEEeC
Q 004255          441 HYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       441 pDg~~Las~S~dgTVhIwdl  460 (765)
                      .|-+++++  -||-+|+||-
T Consensus       794 ~~lr~i~S--cD~giHlWDP  811 (1034)
T KOG4190|consen  794 ADLRSIAS--CDGGIHLWDP  811 (1034)
T ss_pred             eccceeee--ccCcceeecc
Confidence            99998865  4889999984

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=95.40  E-value=0.036  Score=58.15  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=71.4

Q ss_pred             cccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCccc-CCCCCCccccC-Cc
Q 004255          343 ADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMR-SGSGNHKYDWN-SS  418 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~-i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~-~~sG~~~~~~~-~s  418 (765)
                      ..+..+|.+.|||.+.... +..+++|+.+|+-+-|+| ++..|.|+|+||. +.-||..+.+.. +........|- +.
T Consensus       196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~~~l~i~~~~s~~s~WLsgD  274 (319)
T KOG4714|consen  196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDASTTFLSISNQASVISSWLSGD  274 (319)
T ss_pred             EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCCceEEecCccccccccccCC
Confidence            3577899999999998754 445789999999999999 6889999999886 666887532211 00000111121 11


Q ss_pred             c-eEEEEEecccccccEEEE-EEccCCCEEEEEeCCCcEEEEe
Q 004255          419 H-VHLYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       419 ~-~~l~~l~rG~~~a~I~sl-aFSpDg~~Las~S~dgTVhIwd  459 (765)
                      . +-+.++. +.-+....+| +|.--|..|++|++-+-|.|++
T Consensus       275 ~v~s~i~i~-~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  275 PVKSRIEIT-SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cccceEeee-ccccccceeeeeeeccCceEEeccccceEEEec
Confidence            0 1111221 1111112222 3555678899999999888875

>smart00320 WD40 WD40 repeats

Probab=95.40  E-value=0.053  Score=36.77  Aligned_cols=29  Identities=21%  Similarity=0.442  Sum_probs=26.6

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255          431 SATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       431 ~a~I~slaFSpDg~~Las~S~dgTVhIwd  459 (765)
                      ...|.+++|+++++++++++.|+++++|+
T Consensus        12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       12 TGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34699999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=95.25  E-value=1.1  Score=47.66  Aligned_cols=80  Identities=13%  Similarity=0.071  Sum_probs=57.6

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC--CEEEE
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS--QWIAI  448 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg--~~Las  448 (765)
                      .=.+.+|+.....+|+++.||+ +-|||++..      +.        ......-.|-++++.|..+.||+-|  ..|..
T Consensus       205 ~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR~~------~t--------pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~  269 (344)
T KOG4532|consen  205 HGFYNSFSENDLQFAVVFQDGT-CAIYDVRNM------AT--------PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI  269 (344)
T ss_pred             CceeeeeccCcceEEEEecCCc-EEEEEeccc------cc--------chhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence            3467889999999999999886 899999652      21        0111112244566779999999876  45667


Q ss_pred             EeCCCcEEEEeCCCCCC
Q 004255          449 VSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       449 ~S~dgTVhIwdl~~~gg  465 (765)
                      +-.-+.+||-|+..+..
T Consensus       270 sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  270 SEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             ecCcceEEEEEcccCce
Confidence            76778899999988654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.17  E-value=2  Score=46.86  Aligned_cols=94  Identities=22%  Similarity=0.225  Sum_probs=61.6

Q ss_pred             CCeEEEEECCCCcEEEE--e--ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          348 AGIVVVKDFVTRAIISQ--F--KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~--~--~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      +-.+.+-|..+|+.+.+  +  .-|.-.|.-|+++++|..++-.=.+|-   -++..|                   .+.
T Consensus       137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~---~~~~~P-------------------Lva  194 (305)
T PF07433_consen  137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD---PGDAPP-------------------LVA  194 (305)
T ss_pred             CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCC---CCccCC-------------------eEE
Confidence            34566778899998887  5  338889999999999987765433332   112111                   111


Q ss_pred             EEeccc--------------ccccEEEEEEccCCCEEEEEeCC-CcEEEEeCCCC
Q 004255          424 KLHRGI--------------TSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPF  463 (765)
Q Consensus       424 ~l~rG~--------------~~a~I~slaFSpDg~~Las~S~d-gTVhIwdl~~~  463 (765)
                      .+++|.              -..-|-+|+|+.|+.++|++|-+ +.+.+||..+.
T Consensus       195 ~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg  249 (305)
T PF07433_consen  195 LHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG  249 (305)
T ss_pred             EEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence            111111              01238899999999999877765 57899988763

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=95.08  E-value=0.053  Score=69.07  Aligned_cols=119  Identities=12%  Similarity=0.173  Sum_probs=85.9

Q ss_pred             ccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-----cC-----------
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-----RS-----------  406 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~-----~~-----------  406 (765)
                      +++.||.|++|....+..+..++ +-.+.|+.+.|+.+|..+..+..||. +-+|.+.+-+.     ++           
T Consensus      2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi~s 2303 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFIGS 2303 (2439)
T ss_pred             ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeeeeh
Confidence            67899999999999998888876 33488999999999999999888775 99999876321     00           


Q ss_pred             --------CCCCCccccCCc----ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 004255          407 --------GSGNHKYDWNSS----HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS  467 (765)
Q Consensus       407 --------~sG~~~~~~~~s----~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~  467 (765)
                              ..+...-+|+.-    ...+.+.    |...++++++-|.-+.|.+|+.+|.|.|||+....-..
T Consensus      2304 ~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~----H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2304 LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC----HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred             hhhccccCCCCCcccchhcccCcccceeeee----cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence                    011111123221    1222222    22347899999999999999999999999998765443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=94.80  E-value=0.29  Score=51.79  Aligned_cols=101  Identities=12%  Similarity=0.050  Sum_probs=64.6

Q ss_pred             CCCCeEEEEECCC--CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          346 DNAGIVVVKDFVT--RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       346 ~~dG~V~IwDl~s--~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      ..|.++++.++..  .+.+..++.  -.++++++|+|++++++.++ -..|-.|.|...      +         ..++.
T Consensus       135 sndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgd-s~~Vf~y~id~~------s---------ey~~~  196 (344)
T KOG4532|consen  135 SNDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGD-SRRVFRYAIDDE------S---------EYIEN  196 (344)
T ss_pred             cCCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecC-CCcceEEEeCCc------c---------ceeee
Confidence            4455666665543  333333322  23789999999999998877 344667777431      1         01111


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                       .+-..+...=.+.+||.....+|+++.||++-|||+...+.
T Consensus       197 -~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t  237 (344)
T KOG4532|consen  197 -IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT  237 (344)
T ss_pred             -eEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence             11112222346789999999999999999999999987554

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=94.76  E-value=0.37  Score=57.30  Aligned_cols=99  Identities=17%  Similarity=0.301  Sum_probs=71.7

Q ss_pred             cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC---CC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---SG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp---dG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s  418 (765)
                      +.++..|.|.|||+..+..+..|..|.++|..|+|=+   +. .+|+.-.. -..+-+|+..+       |         
T Consensus        83 AsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~-ss~lvLwntdt-------G---------  145 (1062)
T KOG1912|consen   83 ASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG-SSTLVLWNTDT-------G---------  145 (1062)
T ss_pred             EeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC-CcEEEEEEccC-------C---------
Confidence            4567789999999999999999999999999999865   33 23433333 34699999865       5         


Q ss_pred             ceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 004255          419 HVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSp-Dg~~Las~S~dgTVhIwdl~  461 (765)
                       .++++...++  ....|+.|.| |.+.++.-+..|.+-+-+.-
T Consensus       146 -~k~Wk~~ys~--~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  146 -EKFWKYDYSH--EILSCFRVDPFDSRHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             -ceeeccccCC--cceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence             4666654332  2355688887 56788888888887776654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.55  E-value=0.13  Score=58.51  Aligned_cols=118  Identities=18%  Similarity=0.223  Sum_probs=76.6

Q ss_pred             cccCCCCeEEEEECCC-------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCc--------ccCC
Q 004255          343 ADMDNAGIVVVKDFVT-------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC--------MRSG  407 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s-------~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~--------~~~~  407 (765)
                      .++..|.+|++|.++.       ..+..+.++|+.+|..+.|=.|-+++|++.  |. |++||---..        .+-+
T Consensus       751 iSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD--~g-iHlWDPFigr~Laq~~dapk~~  827 (1034)
T KOG4190|consen  751 ISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD--GG-IHLWDPFIGRLLAQMEDAPKEG  827 (1034)
T ss_pred             eeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc--Cc-ceeecccccchhHhhhcCcccC
Confidence            4678899999999864       236667789999999999999999998764  43 9999942110        0001


Q ss_pred             CCCC-----ccc---c-----CCcceEEE---------EEec---ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          408 SGNH-----KYD---W-----NSSHVHLY---------KLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       408 sG~~-----~~~---~-----~~s~~~l~---------~l~r---G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .|..     ..+   .     ..+-.+++         +++-   -..++.+.+++.-+.|+|+|++-..|++-+.|...
T Consensus       828 a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  828 AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence            1100     000   0     00001111         2211   01234588999999999999999999999988765


Q ss_pred             C
Q 004255          463 F  463 (765)
Q Consensus       463 ~  463 (765)
                      .
T Consensus       908 G  908 (1034)
T KOG4190|consen  908 G  908 (1034)
T ss_pred             C
Confidence            3

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=94.45  E-value=6.5  Score=40.06  Aligned_cols=57  Identities=11%  Similarity=-0.030  Sum_probs=42.3

Q ss_pred             CEEEEEECCCCeEEEEE-eCCC------CEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVL-RFRS------SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL-~~~s------~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                      +.|..+|.++|+.+... ....      ......+..+.++++. .+.|+++|+.|++.++....
T Consensus        86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            58999999999999984 4321      1234445577677766 67899999999999888765

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=94.35  E-value=0.13  Score=54.84  Aligned_cols=104  Identities=16%  Similarity=0.112  Sum_probs=70.5

Q ss_pred             cccCCCCeEEEEECC-CCcEEEE-eccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255          343 ADMDNAGIVVVKDFV-TRAIISQ-FKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~-s~~~i~~-~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~  419 (765)
                      .+++.||.+.-||++ .++.+-+ .+-|+..|.++.=+| .+.+++|||-|++ |++||++.-      |          
T Consensus       182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm------~----------  244 (339)
T KOG0280|consen  182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM------G----------  244 (339)
T ss_pred             EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc------c----------
Confidence            367899999999998 3444444 667999999988876 6999999999665 999998642      2          


Q ss_pred             eEEEEEecccccccEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCC
Q 004255          420 VHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~-~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      +++++-.-   .+-|+-+.++|--. .|..+..-.-++|-+++....+
T Consensus       245 kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e  289 (339)
T KOG0280|consen  245 KPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE  289 (339)
T ss_pred             CccccCcc---ccceEEEEecchhhhHHHHHHHhcCceEEEecccccc
Confidence            34443221   23488888887532 2333344444677777654443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=94.30  E-value=0.11  Score=56.49  Aligned_cols=103  Identities=16%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             ccCCCCeEEEEECCCC----cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255          344 DMDNAGIVVVKDFVTR----AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~----~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s  418 (765)
                      .+...|.|.++|++.+    ....+---|.+.|++|..=. ++.+|...+.+|+ |++||++-...    +         
T Consensus       269 ~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~----~---------  334 (425)
T KOG2695|consen  269 NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKC----K---------  334 (425)
T ss_pred             ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhc----c---------
Confidence            5678899999999875    22233335889999987655 7788888888776 99999864211    0         


Q ss_pred             ceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          419 HVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       419 ~~~l~~l~rG~~~a-~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                       .-+.... ||-+. .-.-+-..+....|+++++|-..+||.+..
T Consensus       335 -~~V~qYe-GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  335 -KSVMQYE-GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             -cceeeee-cccccccccccccccccceEEEccCeeEEEEEeccc
Confidence             1122222 33221 111123346677899999999999999985

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.28  E-value=8.4  Score=40.64  Aligned_cols=40  Identities=25%  Similarity=0.427  Sum_probs=30.4

Q ss_pred             CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecC
Q 004255           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPF  116 (765)
Q Consensus        75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~  116 (765)
                      ++.|++|.++|+-++++.......+++....  |.-|+++|.
T Consensus         7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~--I~ql~vl~~   46 (275)
T PF00780_consen    7 GDRLLVGTEDGLYVYDLSDPSKPTRILKLSS--ITQLSVLPE   46 (275)
T ss_pred             CCEEEEEECCCEEEEEecCCccceeEeecce--EEEEEEecc
Confidence            5689999999999999954555666665543  999998863

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=94.26  E-value=0.36  Score=55.44  Aligned_cols=82  Identities=16%  Similarity=0.217  Sum_probs=57.2

Q ss_pred             CeEEEEECCCCcEEEEeccCCC--Ce-EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          349 GIVVVKDFVTRAIISQFKAHTS--PI-SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~--~I-saLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      ..+.|||+.+|.....|..-.+  ++ .-..||.|++++|--..  ..|.||+...                  -.+++.
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~--~sisIyEtps------------------f~lld~  341 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG--NSISIYETPS------------------FMLLDK  341 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc--ceEEEEecCc------------------eeeecc
Confidence            4799999999998888876322  22 24789999999987655  4599999722                  123332


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeC
Q 004255          426 HRGITSATIQDICFSHYSQWIAIVSS  451 (765)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~Las~S~  451 (765)
                      + ...-..|.+..|||.++.||--+.
T Consensus       342 K-slki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  342 K-SLKISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             c-ccCCccccCcccCCCcceEEEEcc
Confidence            2 122234888999999999887654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.24  E-value=0.2  Score=59.07  Aligned_cols=104  Identities=19%  Similarity=0.197  Sum_probs=73.4

Q ss_pred             ccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255          342 GADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~-~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~  419 (765)
                      +++...|-.|..||+.+.. .+..+..-...-+.++|+. ++..||  |..|+.|+|||++.       |.         
T Consensus       130 latcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla--sshg~~i~vwd~r~-------gs---------  191 (1081)
T KOG0309|consen  130 LATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA--SSHGNDIFVWDLRK-------GS---------  191 (1081)
T ss_pred             eeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh--hccCCceEEEeccC-------CC---------
Confidence            3456678899999998864 4444444344556788886 566664  34588999999965       31         


Q ss_pred             eEEEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCC
Q 004255          420 VHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      ..+..+++  +.+.|+.++|..-- ..+.+++.||||+.|+-+....
T Consensus       192 ~pl~s~K~--~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  192 TPLCSLKG--HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             cceEEecc--cceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence            46677765  44578999987432 4678999999999999876443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.64  E-value=0.26  Score=57.46  Aligned_cols=76  Identities=18%  Similarity=0.302  Sum_probs=60.1

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccE-EEEEEccCCCEEEE
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATI-QDICFSHYSQWIAI  448 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-rG~~~a~I-~slaFSpDg~~Las  448 (765)
                      .|-.+.|+|.=.++|++-.+|. +-+..+..                  ++++.+. +|.   .+ .+++|.|||+.||+
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~ge-lli~R~n~------------------qRlwtip~p~~---~v~~sL~W~~DGkllaV   79 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGE-LLIHRLNW------------------QRLWTIPIPGE---NVTASLCWRPDGKLLAV   79 (665)
T ss_pred             ceEEEEEcCccchhheeccCCc-EEEEEecc------------------ceeEeccCCCC---ccceeeeecCCCCEEEE
Confidence            5667899999999999999886 56666532                  5677765 442   24 49999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCCcc
Q 004255          449 VSSKGTCHVFVLSPFGGDSG  468 (765)
Q Consensus       449 ~S~dgTVhIwdl~~~gg~~~  468 (765)
                      |=.||||+|-|+...++...
T Consensus        80 g~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   80 GFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             EecCCeEEEEEccCCCceec
Confidence            99999999999998766543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=93.52  E-value=1.2  Score=49.45  Aligned_cols=56  Identities=18%  Similarity=0.304  Sum_probs=42.1

Q ss_pred             ccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~  401 (765)
                      +++.|+.|+|-....--.+..|. ||+.-|+.|+.-++ ..|+++|-|++ +|+||+..
T Consensus       168 taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~s  224 (390)
T KOG3914|consen  168 TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITS  224 (390)
T ss_pred             EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEeccc
Confidence            44667777776665555556654 79999999999765 56889999665 99999975

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=93.44  E-value=11  Score=39.16  Aligned_cols=99  Identities=16%  Similarity=0.158  Sum_probs=60.7

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      |.|..++.. ++....+. .-..-+.|+|+|||+.|..+......|..|++...      +.   .+ ...+.+..+..+
T Consensus       115 g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~------~~---~~-~~~~~~~~~~~~  182 (246)
T PF08450_consen  115 GSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD------GG---EL-SNRRVFIDFPGG  182 (246)
T ss_dssp             EEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT------TC---CE-EEEEEEEE-SSS
T ss_pred             cceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEecccc------cc---ce-eeeeeEEEcCCC
Confidence            567677766 44333332 23456889999999988766665666888887431      10   00 001222333322


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                        ......+++..+|+..++.-..+.|.+|+.+
T Consensus       183 --~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  183 --PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             --SCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             --CcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence              1236789999999988888888888888754

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=93.26  E-value=0.18  Score=54.99  Aligned_cols=110  Identities=15%  Similarity=0.167  Sum_probs=77.7

Q ss_pred             CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      +.+..|-|-|+++|.. ..|. ..+.|.++.|.-.+.+|.-|...|. |-+.|++..-.++  |          ++...|
T Consensus       231 G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~--~----------~~a~rl  295 (425)
T KOG2695|consen  231 GLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGN--G----------WCAQRL  295 (425)
T ss_pred             cccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCC--C----------cceEEE
Confidence            4556788888888753 3444 5678999999999999999999775 8899997521111  1          344444


Q ss_pred             ecccccccEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCc---cccccc
Q 004255          426 HRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDS---GFQTLS  473 (765)
Q Consensus       426 ~rG~~~a~I~slaFSp-Dg~~Las~S~dgTVhIwdl~~~gg~~---~~~~h~  473 (765)
                      .   +...|+++..=. ++++|++++.+|+|.+||+...++..   ...+|.
T Consensus       296 y---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv  344 (425)
T KOG2695|consen  296 Y---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV  344 (425)
T ss_pred             E---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence            4   234466665444 57899999999999999998776643   345664

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.03  E-value=18  Score=40.54  Aligned_cols=56  Identities=9%  Similarity=0.005  Sum_probs=34.7

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCC--------EEEEE-----ecCCeEEEEeCCeEEEEECCCCceeEEE
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSS--------VCMVR-----CSPRIVAVGLATQIYCFDALTLENKFSV  227 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~--------V~sV~-----~s~~~LaV~~~~~I~iwD~~t~~~l~tl  227 (765)
                      .+.|.-+|.++|+.+...+...+        ...+.     ....+++++.++.++++|+.+++.+++.
T Consensus       214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~  282 (394)
T PRK11138        214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR  282 (394)
T ss_pred             CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence            35677788888887766543211        11111     1224445556678999999999877654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.90  E-value=0.25  Score=38.89  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=28.1

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       432 a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      +.|..++|+|....||.++.||.|.||.++
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            469999999999999999999999999984

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.67  E-value=0.35  Score=56.97  Aligned_cols=103  Identities=12%  Similarity=0.069  Sum_probs=74.7

Q ss_pred             ccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          344 DMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      -|...|.|.+|.-..+.... ...+-++.+..++.|++..++|.|+. +..|-||.+...      +         ...+
T Consensus        50 ~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~-~g~V~v~ql~~~------~---------p~~~  113 (726)
T KOG3621|consen   50 MGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTA-SGRVSVFQLNKE------L---------PRDL  113 (726)
T ss_pred             EecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcC-CceEEeehhhcc------C---------CCcc
Confidence            35667999999977665322 23345567788999999988888887 456899988531      1         0122


Q ss_pred             EEEecccc--cccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          423 YKLHRGIT--SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       423 ~~l~rG~~--~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      ..+.+++.  ...|++++||+|+..|.+|.+.|+|+.-.++.
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            23333333  46799999999999999999999999988876

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=92.44  E-value=1.4  Score=56.17  Aligned_cols=111  Identities=12%  Similarity=0.059  Sum_probs=65.7

Q ss_pred             CCCCeEEEEECCCCcEEEEecc---------C------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC-C
Q 004255          346 DNAGIVVVKDFVTRAIISQFKA---------H------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS-G  409 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~a---------H------~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s-G  409 (765)
                      ..++.|++||..++... .+.+         +      -.....|+|+|+|..|..+..+.+.|++||+......-.. |
T Consensus       702 ~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg  780 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG  780 (1057)
T ss_pred             CCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            45678999998776542 2211         1      1123569999999977777776778999998541000000 0


Q ss_pred             CCccccCCcceEEEEEec--cc----ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          410 NHKYDWNSSHVHLYKLHR--GI----TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       410 ~~~~~~~~s~~~l~~l~r--G~----~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      ...     ....++.+-.  |.    .-..-..++|++||+.+++-+.+++|++||...
T Consensus       781 ~~~-----~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t  834 (1057)
T PLN02919        781 DPT-----FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT  834 (1057)
T ss_pred             ccc-----cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence            000     0000111100  00    001235899999999999999999999999864

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=92.19  E-value=2.4  Score=48.69  Aligned_cols=50  Identities=16%  Similarity=0.208  Sum_probs=38.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCC----eEEEEECCCCc
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLAT----QIYCFDALTLE  222 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~----~I~iwD~~t~~  222 (765)
                      ..+.++|+.+++....+.|...-..-+|+|  +.|+.+...    .|+++|+.+.+
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~  273 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN  273 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence            368899999998888888877666677777  777766542    49999998776

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=92.15  E-value=17  Score=44.89  Aligned_cols=55  Identities=11%  Similarity=0.176  Sum_probs=43.1

Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM  400 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~  400 (765)
                      .++.+|.||+||-...+....|++-..||..|..+.||++|+..+.  +.+-|+++.
T Consensus       593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t~  647 (794)
T PF08553_consen  593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDTL  647 (794)
T ss_pred             EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEEe
Confidence            4678999999996555566678888899999999999998754443  468888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.60  E-value=0.65  Score=55.51  Aligned_cols=96  Identities=17%  Similarity=0.149  Sum_probs=67.7

Q ss_pred             cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      +-+...|.|.+++.... . .+...|...      +-+|.++||||.||+ |.|..+-+.               ...+.
T Consensus        53 ~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~---------------~~~~~  108 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD---------------DEITQ  108 (846)
T ss_pred             eeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCc-EEEeeccCC---------------cccee
Confidence            35678899999987643 2 444455443      789999999999887 777776331               11345


Q ss_pred             EEEecccccccEEEEEEccC-----CCEEEEEeCCCcEEEEeCCCCCCCcc
Q 004255          423 YKLHRGITSATIQDICFSHY-----SQWIAIVSSKGTCHVFVLSPFGGDSG  468 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpD-----g~~Las~S~dgTVhIwdl~~~gg~~~  468 (765)
                      +.++|     .|.+|+++||     ++.+++|+..| +-++.-+-.|....
T Consensus       109 ~df~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~  153 (846)
T KOG2066|consen  109 YDFKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS  153 (846)
T ss_pred             EecCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc
Confidence            66654     5889999999     67889999999 87876655544433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.38  E-value=0.42  Score=57.21  Aligned_cols=99  Identities=17%  Similarity=0.276  Sum_probs=71.4

Q ss_pred             ccCCCCeEEEEECCCCcEEEE--eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          344 DMDNAGIVVVKDFVTRAIISQ--FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~--~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      +....|.|.||- .+|++-..  .+-|   +++|||+|.--.||.+=..| .+.||...+                  ..
T Consensus        36 S~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g-~~~v~~~~~------------------~e   92 (1416)
T KOG3617|consen   36 SPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMG-VSDVQKTNT------------------TE   92 (1416)
T ss_pred             cCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccc-eeEEEecCC------------------ce
Confidence            456678898883 34443222  2223   45699999988898887756 599998743                  23


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      .+... -.+.+.|+-+.|||||..|+++..=|.+|+|.....|..
T Consensus        93 ~htv~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~  136 (1416)
T KOG3617|consen   93 THTVV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI  136 (1416)
T ss_pred             eeeec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence            33332 235678999999999999999999999999999876544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=91.24  E-value=3.4  Score=47.43  Aligned_cols=84  Identities=17%  Similarity=0.183  Sum_probs=48.5

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~  429 (765)
                      .|.+.|+.++.... +..-.+.-..=.|+|||+.++-+|..++.=+||-....      |.        .....++..+.
T Consensus       263 ~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~------g~--------~~~riT~~~~~  327 (425)
T COG0823         263 DIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE------GS--------QVTRLTFSGGG  327 (425)
T ss_pred             cEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC------CC--------ceeEeeccCCC
Confidence            35556666554222 32211111234799999999988877766677765432      21        12233333221


Q ss_pred             ccccEEEEEEccCCCEEEEEeCC
Q 004255          430 TSATIQDICFSHYSQWIAIVSSK  452 (765)
Q Consensus       430 ~~a~I~slaFSpDg~~Las~S~d  452 (765)
                      .  .  .-.|||||++|+..+..
T Consensus       328 ~--~--~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         328 N--S--NPVWSPDGDKIVFESSS  346 (425)
T ss_pred             C--c--CccCCCCCCEEEEEecc
Confidence            1  1  56799999999988854

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.20  E-value=29  Score=42.53  Aligned_cols=50  Identities=8%  Similarity=0.135  Sum_probs=34.3

Q ss_pred             CCeEEEEECCCCcE-EEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCC
Q 004255          348 AGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIM  400 (765)
Q Consensus       348 dG~V~IwDl~s~~~-i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~  400 (765)
                      ...|.+|.+....+ ...+..|-.+++|-+|++.-. ++++++.   .+-+||..
T Consensus       192 t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e---~l~fY~sd  243 (933)
T KOG2114|consen  192 TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE---FLYFYDSD  243 (933)
T ss_pred             cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc---eEEEEcCC
Confidence            34677788774442 445778888999999997655 4544443   58999873

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=90.65  E-value=0.48  Score=55.80  Aligned_cols=98  Identities=16%  Similarity=0.287  Sum_probs=69.0

Q ss_pred             ccccCCCCeEEEEECCCCc---------------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC
Q 004255          342 GADMDNAGIVVVKDFVTRA---------------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS  406 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~---------------~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~  406 (765)
                      ++.++.||.++|..+.+..               .-.++.+|...|.-+.|+.+.+.|-|...+ +.|.||=+-.     
T Consensus        29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~-GlIiVWmlyk-----  102 (1189)
T KOG2041|consen   29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS-GLIIVWMLYK-----  102 (1189)
T ss_pred             EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC-ceEEEEeeec-----
Confidence            4567788988888775421               224678999999999999999999877775 4799997632     


Q ss_pred             CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255          407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV  457 (765)
Q Consensus       407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhI  457 (765)
                        |+    |-   ..... .|  ....|.+++|..||+.|+..-.||.|.|
T Consensus       103 --gs----W~---EEMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen  103 --GS----WC---EEMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIV  141 (1189)
T ss_pred             --cc----HH---HHHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence              21    10   00100 11  2346899999999999999888887754

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=90.58  E-value=0.49  Score=54.86  Aligned_cols=57  Identities=16%  Similarity=0.252  Sum_probs=44.9

Q ss_pred             cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS  402 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~  402 (765)
                      .-|..||.|++||...+.  .++.-+.-..+.++|+|+|.+++.|+..|- +.+||+.-.
T Consensus       275 vlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs  331 (545)
T PF11768_consen  275 VLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS  331 (545)
T ss_pred             EEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence            357899999999987763  333333455688999999999999999775 999998653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=90.43  E-value=0.77  Score=50.19  Aligned_cols=81  Identities=19%  Similarity=0.215  Sum_probs=54.8

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc---c-----------cccEE
Q 004255          370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI---T-----------SATIQ  435 (765)
Q Consensus       370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~---~-----------~a~I~  435 (765)
                      .-|+++.|+.+|.+||||..+|. +-+|.-...      .          .+.|.++...   .           ...|.
T Consensus        26 diis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~------~----------~~ey~~~t~fqshepEFDYLkSleieEKin   88 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGR-VVLFEREKL------Y----------KGEYNFQTEFQSHEPEFDYLKSLEIEEKIN   88 (433)
T ss_pred             cceeeEEeecccceEeecCCCCe-EEEeecccc------c----------ccceeeeeeeeccCcccchhhhhhhhhhhh
Confidence            46899999999999999999665 777864321      0          0111111110   0           12478


Q ss_pred             EEEEccCCC--EEEEEeCCCcEEEEeCCCCCCCc
Q 004255          436 DICFSHYSQ--WIAIVSSKGTCHVFVLSPFGGDS  467 (765)
Q Consensus       436 slaFSpDg~--~Las~S~dgTVhIwdl~~~gg~~  467 (765)
                      .|.|-++++  .+..++.|.||++|.+...+...
T Consensus        89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~  122 (433)
T KOG1354|consen   89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK  122 (433)
T ss_pred             hceecCCCCccEEEEecCCcceeeeeeecccccc
Confidence            899998874  56778899999999998765443

>PRK02888 nitrous-oxide reductase; Validated

Probab=89.78  E-value=2.9  Score=49.76  Aligned_cols=115  Identities=11%  Similarity=0.047  Sum_probs=64.9

Q ss_pred             CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE---cCCCE-----------EEEEeCCCCcccCCCCC-
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---VYGNN-----------INIFRIMPSCMRSGSGN-  410 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS---~dGt~-----------IrVWdi~~~~~~~~sG~-  410 (765)
                      ...+++.+.|..+.+++.++.--. ...-++|+|||+++.+.+   +.|.+           +.+|++.........|. 
T Consensus       212 ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~  290 (635)
T PRK02888        212 KYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKF  290 (635)
T ss_pred             ceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCE
Confidence            456788888988888777765432 235578999999987775   32322           33333321000000010 


Q ss_pred             --------CccccCC----cceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCC
Q 004255          411 --------HKYDWNS----SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFG  464 (765)
Q Consensus       411 --------~~~~~~~----s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~g  464 (765)
                              .-.|...    ....++.+.-|   .....|++||||+++.+++. +.||.|.|+....
T Consensus       291 ~~V~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        291 KTIGGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             EEECCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence                    0000000    00122223222   23568999999999877765 8999999998754

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=89.74  E-value=3.5  Score=38.42  Aligned_cols=65  Identities=20%  Similarity=0.293  Sum_probs=45.7

Q ss_pred             eEEEEECC---CC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 004255          372 ISALCFDP---SG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA  447 (765)
Q Consensus       372 IsaLaFSp---dG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La  447 (765)
                      |++|++..   || .-|+.||. +..||||+=.                   ..++++..   ...|++++=... ..++
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~-D~~IRvf~~~-------------------e~~~Ei~e---~~~v~~L~~~~~-~~F~   57 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSD-DFEIRVFKGD-------------------EIVAEITE---TDKVTSLCSLGG-GRFA   57 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecC-CcEEEEEeCC-------------------cEEEEEec---ccceEEEEEcCC-CEEE
Confidence            55666543   43 46777888 5579999842                   36677652   346888887776 5688


Q ss_pred             EEeCCCcEEEEeC
Q 004255          448 IVSSKGTCHVFVL  460 (765)
Q Consensus       448 s~S~dgTVhIwdl  460 (765)
                      .+..+|||-||+-
T Consensus        58 Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   58 YALANGTVGVYDR   70 (111)
T ss_pred             EEecCCEEEEEeC
Confidence            9999999988865

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=89.63  E-value=0.44  Score=50.34  Aligned_cols=95  Identities=18%  Similarity=0.206  Sum_probs=61.7

Q ss_pred             CeEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          349 GIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       349 G~V~IwDl~s~~~i-~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      +..++|++.-.+.. ...++- ..|.+++-+|..+.++.++.++..+-|||.+.       +.  +     ..-+++   
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn-------~~--~-----p~S~l~---  220 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARN-------VA--M-----PVSLLK---  220 (319)
T ss_pred             cceeeeccccccccccccccc-ccchhhhCCcccccEEEEecCCCeEEEEEccc-------cc--c-----hHHHHH---
Confidence            34566776543321 111222 34999999997766665555566799999854       10  0     011111   


Q ss_pred             ccccccEEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 004255          428 GITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       428 G~~~a~I~slaFSpD-g~~Las~S~dgTVhIwdl~~  462 (765)
                       .+.+.|+.+-|+|. +..|.+++.||.+--||-+.
T Consensus       221 -ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  221 -AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence             13467999999984 58899999999999998774

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.43  E-value=12  Score=45.29  Aligned_cols=46  Identities=11%  Similarity=0.034  Sum_probs=36.4

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecCC-------eEEEEeCCeEEEEE
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR-------IVAVGLATQIYCFD  217 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~-------~LaV~~~~~I~iwD  217 (765)
                      +++|.|-.+-+.+..+++.|.-++.+|++.|.       .+++|....+.++.
T Consensus        92 DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~e  144 (846)
T KOG2066|consen   92 DGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSE  144 (846)
T ss_pred             CCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEeh
Confidence            36899999999999999999999999999873       44554443377764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.31  E-value=1.2  Score=52.10  Aligned_cols=58  Identities=17%  Similarity=0.314  Sum_probs=48.4

Q ss_pred             ccccCCCCeEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~Is-aLaFSpdG~lLATaS~dGt~IrVWdi~~  401 (765)
                      ++.+..+|.|.+.-+. -+.+.+|.-|..++. +++|.|||++||.|=.||+ |++-|+..
T Consensus        35 iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~   93 (665)
T KOG4640|consen   35 IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEK   93 (665)
T ss_pred             hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccC
Confidence            4456788989888887 566778887777787 9999999999999999775 99999965

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=88.53  E-value=1.1  Score=35.14  Aligned_cols=30  Identities=20%  Similarity=0.471  Sum_probs=26.8

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                      ..+|.+++|+|...+||.++.+|. |.||++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence            356999999999999999999876 899988

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=88.09  E-value=11  Score=39.89  Aligned_cols=48  Identities=13%  Similarity=-0.077  Sum_probs=38.6

Q ss_pred             CCeEEE--EEeCCCCEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEe
Q 004255          182 SHCYEH--VLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       182 tg~~v~--tL~~~s~V~sV~~s~~~LaV~~~~~I~iwD~~t~~~l~tl~t  229 (765)
                      .|+..+  .+++.+...++.+...+|++..++.|.||++.++++.+++..
T Consensus       216 ~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  216 NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             CCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence            455443  677888888888888777777778899999999999888864

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.53  E-value=1.7  Score=48.44  Aligned_cols=51  Identities=10%  Similarity=0.224  Sum_probs=43.7

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEEeCC-eEEEEECCCCc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLAT-QIYCFDALTLE  222 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~~~~-~I~iwD~~t~~  222 (765)
                      .++|+|.|+++...+.++..+..++++++..   ..|-.|+.+ .|+|||++..+
T Consensus       215 ~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  215 GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            3699999999999999999899999999876   577788765 59999998755

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=86.77  E-value=42  Score=34.79  Aligned_cols=60  Identities=18%  Similarity=0.238  Sum_probs=40.2

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE-ccCCCEEEEE
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF-SHYSQWIAIV  449 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF-SpDg~~Las~  449 (765)
                      ..-.|+++.+|++.++.-. +..|.++|-.        |          ..+.++.-..  ..+++++| -+|.+.|.+.
T Consensus       185 ~pDG~~vD~~G~l~va~~~-~~~I~~~~p~--------G----------~~~~~i~~p~--~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  185 YPDGLAVDSDGNLWVADWG-GGRIVVFDPD--------G----------KLLREIELPV--PRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEEEEEBTTS-EEEEEET-TTEEEEEETT--------S----------CEEEEEE-SS--SSEEEEEEESTTSSEEEEE
T ss_pred             CCCcceEcCCCCEEEEEcC-CCEEEEECCC--------c----------cEEEEEcCCC--CCEEEEEEECCCCCEEEEE
Confidence            3677999999998776555 4568888852        4          3555554331  36899999 4787877776


Q ss_pred             eC
Q 004255          450 SS  451 (765)
Q Consensus       450 S~  451 (765)
                      +.
T Consensus       244 ta  245 (246)
T PF08450_consen  244 TA  245 (246)
T ss_dssp             EB
T ss_pred             eC
Confidence            54

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.69  E-value=1.8  Score=48.07  Aligned_cols=103  Identities=15%  Similarity=0.234  Sum_probs=60.0

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc--CCCCCCccccCCcceEEEEE
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--SGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~--~~sG~~~~~~~~s~~~l~~l  425 (765)
                      .+...|+|+.+++....... ...+....|||+|+.||-...  +.|.++++......  ...|.         ..++  
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg~---------~~i~--   87 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDGE---------PGIY--   87 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET--TEEEEESSTTSEEEESES--T---------TTEE--
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec--CceEEEECCCCCeEEeccccc---------eeEE--
Confidence            46789999999775444333 677899999999999998875  46888887431100  00010         0000  


Q ss_pred             ecccc--------cccEEEEEEccCCCEEEEEeCC-CcEEEEeCCCCCC
Q 004255          426 HRGIT--------SATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG  465 (765)
Q Consensus       426 ~rG~~--------~a~I~slaFSpDg~~Las~S~d-gTVhIwdl~~~gg  465 (765)
                       -|..        -..-..+.|||||++||....| ..|+.+.+..+..
T Consensus        88 -nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~  135 (353)
T PF00930_consen   88 -NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSP  135 (353)
T ss_dssp             -ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESS
T ss_pred             -cCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCC
Confidence             0100        0001347899999999987655 4466666655443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=86.59  E-value=17  Score=40.78  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=35.9

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecC-CeEEEEeCCeEEEEECCCCceeEE
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGLATQIYCFDALTLENKFS  226 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~-~~LaV~~~~~I~iwD~~t~~~l~t  226 (765)
                      .+.+.-+|.++|+.+...++.+.. .+.... ++.++..+++++++|+.+++.+++
T Consensus       265 ~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~  319 (394)
T PRK11138        265 NGNLVALDLRSGQIVWKREYGSVN-DFAVDGGRIYLVDQNDRVYALDTRGGVELWS  319 (394)
T ss_pred             CCeEEEEECCCCCEEEeecCCCcc-CcEEECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence            467777888888887776654322 223333 445555667899999999876554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.39  E-value=44  Score=39.09  Aligned_cols=55  Identities=9%  Similarity=0.093  Sum_probs=42.6

Q ss_pred             cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                      +.++.+|.|++||-...+....|++--.+|..+..+.||++|+..+.  +.+-|-++
T Consensus       445 vvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~--tyLlLi~t  499 (644)
T KOG2395|consen  445 VVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK--TYLLLIDT  499 (644)
T ss_pred             EEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc--cEEEEEEE
Confidence            35678999999998555556668888999999999999998754433  45777776

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=85.86  E-value=56  Score=41.62  Aligned_cols=98  Identities=15%  Similarity=0.229  Sum_probs=58.7

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d--Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ..|+|||-+ |..-.+=..-..-=.+++|=|+|.++|+--.+  +..|.+|.-.        |-        .+--+.++
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN--------GL--------~hg~f~l~  284 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN--------GL--------RHGEFVLP  284 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC--------Cc--------cccccccC
Confidence            689999976 33211111112222469999999999986432  2248888731        20        01112222


Q ss_pred             cccccccEEEEEEccCCCEEEE---EeCCCcEEEEeCCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAI---VSSKGTCHVFVLSPF  463 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las---~S~dgTVhIwdl~~~  463 (765)
                      .-.....|..++|+.++..||+   .....-|.+|-+..|
T Consensus       285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            2112223889999999999999   444445999988765

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.37  E-value=1.2  Score=54.94  Aligned_cols=75  Identities=11%  Similarity=0.088  Sum_probs=53.2

Q ss_pred             CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255          379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSSKGTCHV  457 (765)
Q Consensus       379 pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~-~a~I~slaFSpDg~~Las~S~dgTVhI  457 (765)
                      -.+..+|.++..|+ +-.+|...                   .+..+.+|.. ...|.+++|+.||+.++.|=.+|-|.+
T Consensus        97 ~~~~~ivi~Ts~gh-vl~~d~~~-------------------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v  156 (1206)
T KOG2079|consen   97 IVVVPIVIGTSHGH-VLLSDMTG-------------------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTV  156 (1206)
T ss_pred             eeeeeEEEEcCchh-hhhhhhhc-------------------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEE
Confidence            35667888888665 77777732                   1222333332 347999999999999999999999999


Q ss_pred             EeCCCCCCCccccccc
Q 004255          458 FVLSPFGGDSGFQTLS  473 (765)
Q Consensus       458 wdl~~~gg~~~~~~h~  473 (765)
                      ||+...+....+..|.
T Consensus       157 ~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen  157 WDMHRAKILKVITEHG  172 (1206)
T ss_pred             EEccCCcceeeeeecC
Confidence            9998755554444443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=83.82  E-value=2.3  Score=47.03  Aligned_cols=58  Identities=17%  Similarity=0.155  Sum_probs=44.6

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecC----CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~----~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                      .+.|-+||+++++.+..+....++.+|.++.    .++++.. ++.+++||+.|++.++++..
T Consensus       268 gteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  268 GTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            3779999999999999999888898888875    3444444 45799999999999998874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=83.62  E-value=2.9  Score=32.30  Aligned_cols=30  Identities=17%  Similarity=0.232  Sum_probs=25.6

Q ss_pred             cEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 004255          433 TIQDICFSHYS---QWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       433 ~I~slaFSpDg---~~Las~S~dgTVhIwdl~~  462 (765)
                      .|.++.|||+.   .+|+.+-..|.|||+|+..
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            37899999855   4899999999999999983

It contains a characteristic DLL sequence motif.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=83.50  E-value=0.65  Score=55.99  Aligned_cols=100  Identities=13%  Similarity=0.145  Sum_probs=77.3

Q ss_pred             cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-EEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt-~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      +-|...|.|+++++.+|.......+|.++|+-+.=+.||.++.|.|.-.. ..-+|++...      +          ..
T Consensus      1117 ~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~------~----------~~ 1180 (1516)
T KOG1832|consen 1117 AVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST------G----------GP 1180 (1516)
T ss_pred             EeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc------c----------Cc
Confidence            35678899999999999999999999999999999999999888776333 4568987431      1          23


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      .+.++ +     -.++.||...++-+.|+....++|||+.+..
T Consensus      1181 ~Hsf~-e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1181 RHSFD-E-----DKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred             ccccc-c-----cceeehhhhHHHHHhcccccceEEEecccCc
Confidence            33332 2     2458899888887888888889999998743

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=82.65  E-value=4.8  Score=45.64  Aligned_cols=113  Identities=15%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             CCCCeEEEEECCCCc-EEEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC-cceEE
Q 004255          346 DNAGIVVVKDFVTRA-IISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS-SHVHL  422 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~-~i~~~-~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~-s~~~l  422 (765)
                      ..+|.+.|+|-.... ....+ +-|.+||.++.+++.|....+... ++.|.-|......+... +  ..+|.- +..-+
T Consensus       119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~-~gmVEyWs~e~~~qfPr-~--~l~~~~K~eTdL  194 (558)
T KOG0882|consen  119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI-SGMVEYWSAEGPFQFPR-T--NLNFELKHETDL  194 (558)
T ss_pred             ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc-cceeEeecCCCcccCcc-c--cccccccccchh
Confidence            456788888866543 33334 359999999999999999988887 55799998753111000 0  011111 01223


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      |.+..-  .....++.|||||..+++-+.|.+|++|+.....
T Consensus       195 y~f~K~--Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  195 YGFPKA--KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             hccccc--ccCccceEEccccCcccccCcccEEEEEEeccch
Confidence            333211  1247899999999999999999999999987643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.09  E-value=6.3  Score=47.93  Aligned_cols=107  Identities=15%  Similarity=0.110  Sum_probs=74.8

Q ss_pred             ccccCCCCeEEEEECCCCcEEEEeccCCCC-eEEEEECCCCCEEEEEEcCCC----EEEEEeCCCCcccCCCCCCccccC
Q 004255          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSP-ISALCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWN  416 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~-IsaLaFSpdG~lLATaS~dGt----~IrVWdi~~~~~~~~sG~~~~~~~  416 (765)
                      ++-+..+|.|.+.+- .-+.+..|++|... |..|-...+-.+|++-+.|+.    .++|||+....     +.      
T Consensus        38 vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-----~n------  105 (933)
T KOG2114|consen   38 VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-----KN------  105 (933)
T ss_pred             EEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-----CC------
Confidence            345677888777662 33455889999888 666655555589999998887    89999996521     11      


Q ss_pred             CcceEEEEEe-----cccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          417 SSHVHLYKLH-----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       417 ~s~~~l~~l~-----rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                      .+.+++++.+     -+....++.+|+.|.|-+.+|+|=.+|.|..+.=
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G  154 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG  154 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence            1124454332     2322346899999999999999999999988753

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=82.07  E-value=3  Score=43.58  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             ccCCCCeEEEEECCCCcEEEE-eccCCCCeEE-EEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          344 DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~-~~aH~~~Isa-LaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      -+..+|.|.+|...-...... +..-..+|.+ +.--.++.+..++..+| .||.|++.++                 ++
T Consensus        75 vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg-~ir~~n~~p~-----------------k~  136 (238)
T KOG2444|consen   75 VGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDG-RIRACNIKPN-----------------KV  136 (238)
T ss_pred             eecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCC-ceeeeccccC-----------------ce
Confidence            456789999998762111111 1111223333 22234566777888866 5999999873                 23


Q ss_pred             EEEEeccccc-ccEEEEEEccCCCEEEEE--eCCCcEEEEeCCCCCCCc
Q 004255          422 LYKLHRGITS-ATIQDICFSHYSQWIAIV--SSKGTCHVFVLSPFGGDS  467 (765)
Q Consensus       422 l~~l~rG~~~-a~I~slaFSpDg~~Las~--S~dgTVhIwdl~~~gg~~  467 (765)
                      +-  .+|.++ ..+..+.-+.-+++|+++  |.|.+++.|++.+.....
T Consensus       137 ~g--~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~  183 (238)
T KOG2444|consen  137 LG--YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES  183 (238)
T ss_pred             ee--eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence            22  234444 556667777778889888  999999999998765544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=81.92  E-value=1.1e+02  Score=35.67  Aligned_cols=57  Identities=14%  Similarity=-0.037  Sum_probs=38.8

Q ss_pred             CEEEEEECCCCeEEEEEeCCCC-------E--EEEEecC-CeEEE-EeCCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSS-------V--CMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~-------V--~sV~~s~-~~LaV-~~~~~I~iwD~~t~~~l~tl~t  229 (765)
                      +.|.-.|.++|+.+...+....       +  ..+.... ..|.+ ..++.|+.+|+.|++.++....
T Consensus        71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            5788889999998887765332       1  1122322 44544 4567899999999999888754

The alignment model contains an 8-bladed beta-propeller.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=81.68  E-value=22  Score=40.44  Aligned_cols=87  Identities=15%  Similarity=0.167  Sum_probs=48.9

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC---CCCCCc-----------------------cccCCcceEEEE
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS---GSGNHK-----------------------YDWNSSHVHLYK  424 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~---~sG~~~-----------------------~~~~~s~~~l~~  424 (765)
                      .|.++.|.++-.-||.+-..|. +-||........+   ......                       .........++-
T Consensus         3 ~v~~vs~a~~t~Elav~~~~Ge-Vv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGE-VVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS--EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCc-EEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            4788999998777888888776 6677654321110   000000                       000011122222


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      ++-  ..+.|++++.| |=-++|+|..+|++-|.|+.
T Consensus        82 ~~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~R  115 (395)
T PF08596_consen   82 LDA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLR  115 (395)
T ss_dssp             E-----S-SEEEEEE--BTSEEEEEETTSEEEEEETT
T ss_pred             eec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECC
Confidence            221  24579999998 55599999999999999994

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=80.86  E-value=29  Score=32.43  Aligned_cols=87  Identities=11%  Similarity=0.150  Sum_probs=57.9

Q ss_pred             cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      ..++.|..|+||+-.  ..+..+..+ +.|.+|+-... ..++.|-..|+ |-||+-.                   .++
T Consensus        19 lvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~~-------------------~Rl   74 (111)
T PF14783_consen   19 LVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGT-VGVYDRS-------------------QRL   74 (111)
T ss_pred             EEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCE-EEEEeCc-------------------cee
Confidence            357789999999854  567777665 45667666655 56888888786 9999852                   366


Q ss_pred             EEEecccccccEEEEEEc---cCC-CEEEEEeCCCcEE
Q 004255          423 YKLHRGITSATIQDICFS---HYS-QWIAIVSSKGTCH  456 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFS---pDg-~~Las~S~dgTVh  456 (765)
                      ++.+..   ..+.++++.   -|| .-|++|=.+|.|-
T Consensus        75 WRiKSK---~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKSK---NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeccC---CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            666532   235555543   334 3577888888764

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.83  E-value=3.9  Score=50.72  Aligned_cols=57  Identities=18%  Similarity=0.369  Sum_probs=38.8

Q ss_pred             ccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255          344 DMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~  401 (765)
                      .+...|.|...|.... +....=..-++||++++|+.||++|+.|=.+| .|.+||+..
T Consensus       104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G-~V~v~D~~~  161 (1206)
T KOG2079|consen  104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDG-HVTVWDMHR  161 (1206)
T ss_pred             EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCC-cEEEEEccC
Confidence            4445566777776542 11111112367999999999999998887756 499999965

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=80.79  E-value=1.7e+02  Score=36.97  Aligned_cols=96  Identities=11%  Similarity=0.157  Sum_probs=67.5

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      ...|+||++.+++.+..=..|..++.+|...-.|..+|.|..-+. |.+-..+..     .|           .+++..|
T Consensus       847 n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~-----eg-----------~f~evAr  909 (1096)
T KOG1897|consen  847 NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGD-----EG-----------NFEEVAR  909 (1096)
T ss_pred             CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEecc-----CC-----------ceEEeeh
Confidence            347999999998777776788899999999999999999987544 555443221     12           3566666


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      .....+++.+.+=.|..+| .+..+|.+.+-..+
T Consensus       910 D~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  910 DYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKD  942 (1096)
T ss_pred             hhCccceeeEEEecCceEE-eecccccEEEEEec
Confidence            6566677788877665554 45667776665554

>PRK02888 nitrous-oxide reductase; Validated

Probab=80.70  E-value=13  Score=44.58  Aligned_cols=106  Identities=9%  Similarity=0.045  Sum_probs=69.4

Q ss_pred             CCeEEEEECCC-----CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          348 AGIVVVKDFVT-----RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       348 dG~V~IwDl~s-----~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      ++.|.|.|..+     .+.+..+.--. ....|++||||++++.++.-..++-|.|+......- .+  ..+..  ....
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~-~~--~~~~~--~~vv  368 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF-DG--KIKPR--DAVV  368 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh-hc--cCCcc--ceEE
Confidence            46799999988     45566665332 335789999999999998877789999996521000 00  00000  0122


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .+..-|..   -...+|.++|+...+--.|..|-.|++..
T Consensus       369 aevevGlG---PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        369 AEPELGLG---PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EeeccCCC---cceEEECCCCCEEEeEeecceeEEEehHH
Confidence            22222322   23578999999888888899999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	765
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.94
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.93
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.92
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.92
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.92
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.92
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.92
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.92
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.92
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.91
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.91
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.91
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.91
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.91
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.9
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.9
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.9
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.9
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.9
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.9
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.9
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.89
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.89
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.89
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.89
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.88
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.88
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.88
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.88
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.88
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.88
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.88
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.88
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.87
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.87
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.87
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.87
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.87
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.87
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.87
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.87
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.86
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.86
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.86
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.86
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.86
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.86
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.86
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.86
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.86
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.86
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.85
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.85
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.85
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.85
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.85
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.85
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.85
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.85
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.84
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.84
3jro_A	753	Fusion protein of protein transport protein SEC13	99.84
2pm7_B	297	Protein transport protein SEC13, protein transport	99.83
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.83
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.83
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.83
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.83
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.83
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.83
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.82
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.82
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.82
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.82
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.81
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.81
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.81
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.81
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.81
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.81
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.81
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.8
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.8
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.8
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.79
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.79
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.79
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.79
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.76
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.75
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.75
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.74
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.74
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.73
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.73
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.72
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.72
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.72
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.71
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.71
3jro_A	753	Fusion protein of protein transport protein SEC13	99.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.68
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.68
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.66
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.65
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.64
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.61
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.58
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.56
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.55
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.53
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.51
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.49
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.49
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.47
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.46
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.44
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.42
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.4
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.39
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.39
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.38
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.35
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.34
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.34
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.34
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.32
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.31
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.3
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.3
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.28
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.28
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.27
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.24
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.24
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.17
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.15
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.11
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.09
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.08
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.08
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.06
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.0
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.92
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.87
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.86
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.81
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.79
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.75
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.74
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.74
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.57
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.55
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.53
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.49
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.47
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.44
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.4
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.39
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.37
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.29
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.2
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.19
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.19
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.16
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.16
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.14
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.11
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.06
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.05
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.05
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.92
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.9
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.83
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.76
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.61
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.61
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.59
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.52
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.47
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.45
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.44
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.44
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.43
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.38
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.33
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.26
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.22
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.17
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.08
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.05
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.04
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.0
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.97
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.94
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.93
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.92
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.92
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.91
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.84
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.81
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.76
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.74
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.58
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.47
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.42
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.4
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.2
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.62
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.51
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	94.69
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.16
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.08
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.7
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.42
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	93.33
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.09
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	92.97
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	92.96
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	92.58
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.57
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.5
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	91.67
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	90.79
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	90.3
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	90.19
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	90.06
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	89.87
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	89.81
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.56
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	89.53
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	88.11
3v65_B	386	Low-density lipoprotein receptor-related protein;	86.61
2p4o_A	306	Hypothetical protein; putative lactonase, structur	86.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	85.93
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	84.49
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	84.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	81.93
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	81.69
4a2l_A	795	BT_4663, two-component system sensor histidine kin	81.53
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	80.32

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=7.4e-29  Score=268.75  Aligned_cols=241  Identities=20%  Similarity=0.245  Sum_probs=189.5

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      ...+++.|..+.|..       ++++|++|..+|++|||++.   ...+...+.+.+..+++++.           .+  
T Consensus        15 ~~~h~~~V~~v~fs~-------dg~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~--   71 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQ-------DQSCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHR-----------TN--   71 (355)
T ss_dssp             ----CCCCCEEEECT-------TSSEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTT-----------SS--
T ss_pred             cccCCCceEEEEECC-------CCCEEEEEcCCEEEEEecCC---cceeeeeecCCeEEEEEcCC-----------CC--
Confidence            356788999999976       36799999999999999864   34445555556888888843           23  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEeCC
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLAT  211 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~~~  211 (765)
                      ++++++++                                +++|+|||+++++++.++.+++.|.+++++++.++++.++
T Consensus        72 ~~~~~~~~--------------------------------d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~  119 (355)
T 3vu4_A           72 YVAFVTGV--------------------------------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGD  119 (355)
T ss_dssp             EEEEECSS--------------------------------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred             EEEEEECC--------------------------------ccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcC
Confidence            66654321                                3699999999999999999999999999999999999999


Q ss_pred             eEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCC
Q 004255          212 QIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG  290 (765)
Q Consensus       212 ~I~iwD~~t~-~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~  290 (765)
                      .|++||+.++ +.++++.+ +               .+.+++++.+||+++                             
T Consensus       120 ~i~i~d~~~~~~~~~~~~~-~---------------~~~~~~s~~~la~~s-----------------------------  154 (355)
T 3vu4_A          120 VISVFKFGNPWKRITDDIR-F---------------GGVCEFSNGLLVYSN-----------------------------  154 (355)
T ss_dssp             EEEEEESSTTCCBSSCCEE-E---------------EEEEEEETTEEEEEE-----------------------------
T ss_pred             EEEEEECCCCceeeEEecc-C---------------CceEEEEccEEEEeC-----------------------------
Confidence            9999999988 66655544 1               134555555555541                             


Q ss_pred             CcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc----------
Q 004255          291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----------  360 (765)
Q Consensus       291 gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~----------  360 (765)
                                                                            +..+|.|+|||+.+++          
T Consensus       155 ------------------------------------------------------g~~~g~v~iwd~~~~~~~~~~~~~~~  180 (355)
T 3vu4_A          155 ------------------------------------------------------EFNLGQIHITKLQSSGSATTQDQGVQ  180 (355)
T ss_dssp             ------------------------------------------------------SSCTTCEEEEECCC------------
T ss_pred             ------------------------------------------------------CCcCcEEEEEECCCCCcccccccccc
Confidence                                                                  2357889999998765          


Q ss_pred             ------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE
Q 004255          361 ------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI  434 (765)
Q Consensus       361 ------~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I  434 (765)
                            .+..+.+|..+|.+|+|+|+|++|||||.||+.|+|||+.+       +          .++..+.+|.+...|
T Consensus       181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-------~----------~~~~~~~~g~h~~~v  243 (355)
T 3vu4_A          181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-------G----------VLVREFRRGLDRADV  243 (355)
T ss_dssp             ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT-------C----------CEEEEEECTTCCSCE
T ss_pred             ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC-------C----------cEEEEEEcCCCCCcE
Confidence                  26889999999999999999999999999765599999965       3          577888767556789


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          435 QDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       435 ~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ++++|+|||++|++++.|++|+|||+...
T Consensus       244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          244 VDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            99999999999999999999999999764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.1e-25  Score=240.80  Aligned_cols=287  Identities=12%  Similarity=0.133  Sum_probs=208.4

Q ss_pred             cCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255           50 NASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        50 ~~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g-~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      .....|++.|..+.|....   ...+..|++|..++ ++|||+.... .+...+.+|.+.|.++.+.|+           
T Consensus        26 ~~~~~H~~~V~~v~~~~~~---~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-----------   91 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNK---KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-----------   91 (321)
T ss_dssp             EETTSSSSCEEEEEEC----------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-----------
T ss_pred             eecccCCCcEEEEEEecCC---CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-----------
Confidence            3356799999999996521   12356888888776 9999996422 123457789999999998864           


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--Ce
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RI  204 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~  204 (765)
                        .++|+..+                                 .+++|++||+.+++.+..+..+ ..|..+++++  ++
T Consensus        92 --~~~l~s~s---------------------------------~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~  136 (321)
T 3ow8_A           92 --LPIAASSS---------------------------------LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY  136 (321)
T ss_dssp             --SSEEEEEE---------------------------------TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSE
T ss_pred             --CCEEEEEe---------------------------------CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCE
Confidence              34665422                                 1369999999999999999764 5788999988  67


Q ss_pred             EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCC
Q 004255          205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       205 LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                      |+++. ++.|++||+.+++...++..+...             ...++++|  ++||+++.+..+     ..|+..+.  
T Consensus       137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~-------------v~~~~~spdg~~lasg~~dg~i-----~iwd~~~~--  196 (321)
T 3ow8_A          137 LATGTHVGKVNIFGVESGKKEYSLDTRGKF-------------ILSIAYSPDGKYLASGAIDGII-----NIFDIATG--  196 (321)
T ss_dssp             EEEECTTSEEEEEETTTCSEEEEEECSSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETTTT--
T ss_pred             EEEEcCCCcEEEEEcCCCceeEEecCCCce-------------EEEEEECCCCCEEEEEcCCCeE-----EEEECCCC--
Confidence            88766 467999999999988888765442             35688888  899998765311     12322111  


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~  361 (765)
                                .+                .+++.++.      .....+.++++++    .+++++.||+|+|||+.+++.
T Consensus       197 ----------~~----------------~~~~~~h~------~~v~~l~~spd~~----~l~s~s~dg~i~iwd~~~~~~  240 (321)
T 3ow8_A          197 ----------KL----------------LHTLEGHA------MPIRSLTFSPDSQ----LLVTASDDGYIKIYDVQHANL  240 (321)
T ss_dssp             ----------EE----------------EEEECCCS------SCCCEEEECTTSC----EEEEECTTSCEEEEETTTCCE
T ss_pred             ----------cE----------------EEEEcccC------CceeEEEEcCCCC----EEEEEcCCCeEEEEECCCcce
Confidence                      00                01222211      1112233344333    245778999999999999999


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (765)
Q Consensus       362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (765)
                      +..+.+|..+|.+++|+|+|++|++++.|++ |+|||+..       +          .++..+. + +...|++++|+|
T Consensus       241 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~-------~----------~~~~~~~-~-h~~~v~~v~~s~  300 (321)
T 3ow8_A          241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGT-------R----------TCVHTFF-D-HQDQVWGVKYNG  300 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEEEECT
T ss_pred             eEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCC-------C----------EEEEEEc-C-CCCcEEEEEECC
Confidence            9999999999999999999999999999775 99999965       3          4666664 3 345799999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCC
Q 004255          442 YSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       442 Dg~~Las~S~dgTVhIwdl~  461 (765)
                      |+++|++++.||+|+|||..
T Consensus       301 ~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          301 NGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TSSEEEEEETTCCEEEEECC
T ss_pred             CCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999963

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=2.7e-25  Score=241.10  Aligned_cols=237  Identities=13%  Similarity=0.123  Sum_probs=168.9

Q ss_pred             cEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceE----eeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255           58 QVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNE----LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (765)
Q Consensus        58 ~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~e----lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpL  132 (765)
                      .|.-+.|..       +++ |++|..+| ++|||++. ++...    .+..|.+.|.+|++.|+             ..+
T Consensus        84 ~v~~~~~s~-------d~~-l~~~s~dg~v~lWd~~~-~~~~~~~~~~~~~H~~~V~~v~~spd-------------g~~  141 (344)
T 4gqb_B           84 GVADLTWVG-------ERG-ILVASDSGAVELWELDE-NETLIVSKFCKYEHDDIVSTVSVLSS-------------GTQ  141 (344)
T ss_dssp             CEEEEEEET-------TTE-EEEEETTSEEEEEEECT-TSSCEEEEEEEECCSSCEEEEEECTT-------------SSE
T ss_pred             CEEEEEEeC-------CCe-EEEEECCCEEEEEeccC-CCceeEeeccccCCCCCEEEEEECCC-------------CCE
Confidence            456666643       234 55666665 99999964 44333    34478899999999975             236


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEEEE
Q 004255          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVG  208 (765)
Q Consensus       133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~LaV~  208 (765)
                      |++.+.                                 +++|++||+++++++.++..+ ..|.+++|++   .+|+++
T Consensus       142 l~sgs~---------------------------------d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~  188 (344)
T 4gqb_B          142 AVSGSK---------------------------------DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSC  188 (344)
T ss_dssp             EEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             EEEEeC---------------------------------CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeee
Confidence            665221                                 368999999999999999865 6999999986   466665


Q ss_pred             e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255          209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (765)
Q Consensus       209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s  287 (765)
                      . ++.|++||+.+++...++..+...           .....+++       ...+                        
T Consensus       189 s~D~~v~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~-------~p~~------------------------  226 (344)
T 4gqb_B          189 SEDNRILLWDTRCPKPASQIGCSAPG-----------YLPTSLAW-------HPQQ------------------------  226 (344)
T ss_dssp             ETTSCEEEEETTSSSCEEECC----C-----------CCEEEEEE-------CSSC------------------------
T ss_pred             ccccccccccccccceeeeeecceee-----------ccceeeee-------cCCC------------------------
Confidence            4 678999999999877766432110           00112222       2110                        


Q ss_pred             CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA  367 (765)
Q Consensus       288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a  367 (765)
                         +.+                                                ++.+..||+|+|||+.+++++.+|.+
T Consensus       227 ---~~~------------------------------------------------l~sg~~dg~v~~wd~~~~~~~~~~~~  255 (344)
T 4gqb_B          227 ---SEV------------------------------------------------FVFGDENGTVSLVDTKSTSCVLSSAV  255 (344)
T ss_dssp             ---TTE------------------------------------------------EEEEETTSEEEEEESCC--CCEEEEC
T ss_pred             ---Ccc------------------------------------------------eEEeccCCcEEEEECCCCcEEEEEcC
Confidence               000                                                12345789999999999999999999


Q ss_pred             CCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-E
Q 004255          368 HTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-W  445 (765)
Q Consensus       368 H~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~  445 (765)
                      |..+|.+|+|+|+| ++|||||.|++ |+|||+..       +           .+.++. |+ ...|++|+||||++ +
T Consensus       256 h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~-------~-----------~~~~~~-~H-~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          256 HSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSL-------S-----------ELFRSQ-AH-RDFVRDATWSPLNHSL  314 (344)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTC-------C-----------EEEEEC-CC-SSCEEEEEECSSSTTE
T ss_pred             CCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCC-------C-----------cEEEEc-CC-CCCEEEEEEeCCCCeE
Confidence            99999999999998 58999999775 99999854       2           455553 54 45799999999986 5


Q ss_pred             EEEEeCCCcEEEEeCCCC
Q 004255          446 IAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       446 Las~S~dgTVhIwdl~~~  463 (765)
                      |++++.|++|++|++...
T Consensus       315 las~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          315 LTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEEETTSCEEEEECCC-
T ss_pred             EEEEcCCCeEEEEECCCC
Confidence            779999999999999753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=9.5e-25  Score=234.21  Aligned_cols=254  Identities=14%  Similarity=0.114  Sum_probs=191.5

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||+. .++....+..|.+.|..+++.|+             .
T Consensus        51 l~gH~~~v~~~~~s~-------d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~v~~~~~s~~-------------~  109 (340)
T 1got_B           51 LRGHLAKIYAMHWGT-------DSRLLLSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPS-------------G  109 (340)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETT-TCCEEEEEECSSSCEEEEEECTT-------------S
T ss_pred             ecCCCCceEEEEECC-------CCCEEEEEeCCCcEEEEECC-CCCcceEeecCCccEEEEEECCC-------------C
Confidence            457889999999864       356888888877 9999995 56677778889999999999874             2


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe----EEEEEeCC-CCEEEEEecC-Ce
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC----YEHVLRFR-SSVCMVRCSP-RI  204 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~----~v~tL~~~-s~V~sV~~s~-~~  204 (765)
                      .+|++.+.                                 +++|++||+.+++    ....+..+ ..|.++.+++ ..
T Consensus       110 ~~l~s~~~---------------------------------d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  156 (340)
T 1got_B          110 NYVACGGL---------------------------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ  156 (340)
T ss_dssp             SEEEEEET---------------------------------TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE
T ss_pred             CEEEEEeC---------------------------------CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc
Confidence            36655221                                 3689999998763    55566544 6899998876 34


Q ss_pred             EE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCC
Q 004255          205 VA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (765)
Q Consensus       205 La-V~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s  283 (765)
                      |+ .+.++.|++||+.+++++.++..|..+             ...++++|       +.                    
T Consensus       157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~--------------------  196 (340)
T 1got_B          157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-------------VMSLSLAP-------DT--------------------  196 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECT-------TS--------------------
T ss_pred             EEEEECCCcEEEEECCCCcEEEEEcCCCCc-------------eEEEEECC-------CC--------------------
Confidence            44 455678999999999988887766542             22334432       10                    


Q ss_pred             CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE
Q 004255          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS  363 (765)
Q Consensus       284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~  363 (765)
                             .                                                 .+++++.||+|+|||+.+++.+.
T Consensus       197 -------~-------------------------------------------------~l~sg~~d~~v~~wd~~~~~~~~  220 (340)
T 1got_B          197 -------R-------------------------------------------------LFVSGACDASAKLWDVREGMCRQ  220 (340)
T ss_dssp             -------S-------------------------------------------------EEEEEETTSCEEEEETTTCSEEE
T ss_pred             -------C-------------------------------------------------EEEEEeCCCcEEEEECCCCeeEE
Confidence                   0                                                 01134568999999999999999


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (765)
Q Consensus       364 ~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (765)
                      .|.+|..+|.+++|+|+|.+||+++.||+ |+|||+..       +          ..+..+........|.+++|+|||
T Consensus       221 ~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~-------~----------~~~~~~~~~~~~~~v~~~~~s~~g  282 (340)
T 1got_B          221 TFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRA-------D----------QELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEECTTS
T ss_pred             EEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCC-------C----------cEEEEEccCCcccceEEEEECCCC
Confidence            99999999999999999999999999775 99999964       2          344444322223469999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      ++|++++.|++|+|||+........+.+|.
T Consensus       283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~  312 (340)
T 1got_B          283 RLLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             CEEEEECCCCeEEEEEcccCcEeeEeecCC
Confidence            999999999999999998765555566664

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.94  E-value=5.3e-25  Score=243.05  Aligned_cols=251  Identities=14%  Similarity=0.171  Sum_probs=195.8

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      .+|++.|..+.|..       .+.+|++|..+| ++|||++ .+++...+..|.++|.++++.|+             ..
T Consensus       105 ~gh~~~V~~~~~~p-------~~~~l~s~s~Dg~i~vwd~~-~~~~~~~l~~h~~~V~~v~~~~~-------------~~  163 (410)
T 1vyh_C          105 SGHRSPVTRVIFHP-------VFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHS-------------GK  163 (410)
T ss_dssp             ECCSSCEEEEEECS-------SSSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTT-------------SS
T ss_pred             cccCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECC-CCcEEEEEeccCCcEEEEEEcCC-------------CC
Confidence            35777888888865       256888888776 9999995 57788899999999999999864             23


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG  208 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~  208 (765)
                      +|++.+.                                 +++|+|||+.+++++.++..+ ..|.++++++  ++|+++
T Consensus       164 ~l~sgs~---------------------------------D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~  210 (410)
T 1vyh_C          164 LLASCSA---------------------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA  210 (410)
T ss_dssp             EEEEEET---------------------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE
T ss_pred             EEEEEeC---------------------------------CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            6665321                                 368999999999999998755 5899999987  567665


Q ss_pred             e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255          209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (765)
Q Consensus       209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s  287 (765)
                      . ++.|++||+.+++++.++..|...             ...+++       ..+.                        
T Consensus       211 s~D~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~-------~~~g------------------------  246 (410)
T 1vyh_C          211 SRDKTIKMWEVQTGYCVKTFTGHREW-------------VRMVRP-------NQDG------------------------  246 (410)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEE-------CTTS------------------------
T ss_pred             eCCCeEEEEECCCCcEEEEEeCCCcc-------------EEEEEE-------CCCC------------------------
Confidence            4 568999999999998888776542             112222       1110                        


Q ss_pred             CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA  367 (765)
Q Consensus       288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a  367 (765)
                          .                                                .+++++.||+|+|||+.+++....+.+
T Consensus       247 ----~------------------------------------------------~l~s~s~D~~v~vwd~~~~~~~~~~~~  274 (410)
T 1vyh_C          247 ----T------------------------------------------------LIASCSNDQTVRVWVVATKECKAELRE  274 (410)
T ss_dssp             ----S------------------------------------------------EEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             ----C------------------------------------------------EEEEEcCCCeEEEEECCCCceeeEecC
Confidence                0                                                012345789999999999999999999


Q ss_pred             CCCCeEEEEECCC--------------------CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          368 HTSPISALCFDPS--------------------GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       368 H~~~IsaLaFSpd--------------------G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      |...|.+++|+|+                    |.+|+||+.|+ .|+|||+..       |          .++..+. 
T Consensus       275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~-~i~iwd~~~-------~----------~~~~~~~-  335 (410)
T 1vyh_C          275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK-TIKMWDVST-------G----------MCLMTLV-  335 (410)
T ss_dssp             CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS-EEEEEETTT-------T----------EEEEEEE-
T ss_pred             CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC-eEEEEECCC-------C----------ceEEEEE-
Confidence            9999999999996                    77999999966 599999965       3          4666664 


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      |+ ...|.+++|+|+|++|++++.||+|+|||+........+..|.
T Consensus       336 ~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~  380 (410)
T 1vyh_C          336 GH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE  380 (410)
T ss_dssp             CC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             CC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence            43 4579999999999999999999999999998766555566664

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.94  E-value=1.6e-24  Score=239.20  Aligned_cols=259  Identities=12%  Similarity=0.119  Sum_probs=190.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..++.+.|..+.|..       .+++|++|..+| ++|||+. .+++...+..|++.|.++.+.|+.             
T Consensus       146 l~~h~~~V~~v~~~~-------~~~~l~sgs~D~~i~iwd~~-~~~~~~~~~~h~~~V~~v~~~p~~-------------  204 (410)
T 1vyh_C          146 LKGHTDSVQDISFDH-------SGKLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMPNG-------------  204 (410)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTSCCCEEETT-SSCEEECCCCCSSCEEEEEECSSS-------------
T ss_pred             EeccCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEeCC-CCceeEEEcCCCCCEEEEEEeCCC-------------
Confidence            345777888888864       256888888876 9999995 567788889999999999999752             


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV  207 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV  207 (765)
                      .+|++.+.                                 +++|++||+++++++.++..+ ..|..+.+++  ++|++
T Consensus       205 ~~l~s~s~---------------------------------D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s  251 (410)
T 1vyh_C          205 DHIVSASR---------------------------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS  251 (410)
T ss_dssp             SEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence            25654221                                 369999999999999999865 5899999987  57776


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                      +. ++.|++||+.++++..++..|..+             ...++++|       ......    .  ....        
T Consensus       252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~~~~~----~--~~~~--------  297 (410)
T 1vyh_C          252 CSNDQTVRVWVVATKECKAELREHRHV-------------VECISWAP-------ESSYSS----I--SEAT--------  297 (410)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECC-------SCGGGG----G--GGCC--------
T ss_pred             EcCCCeEEEEECCCCceeeEecCCCce-------------EEEEEEcC-------cccccc----h--hhhc--------
Confidence            55 568999999999988888776652             23344433       110000    0  0000        


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~  366 (765)
                          +                 .                . ......    .+..+++++.||+|+|||+.+++++..+.
T Consensus       298 ----~-----------------~----------------~-~~~~~~----~g~~l~sgs~D~~i~iwd~~~~~~~~~~~  335 (410)
T 1vyh_C          298 ----G-----------------S----------------E-TKKSGK----PGPFLLSGSRDKTIKMWDVSTGMCLMTLV  335 (410)
T ss_dssp             ----S-----------------C----------------C------------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ----c-----------------c----------------c-ccccCC----CCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence                0                 0                0 000000    00123467789999999999999999999


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (765)
Q Consensus       367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (765)
                      +|..+|.+++|+|+|++|+||+.|| .|+|||+..       +          .++..+. + +...|++++|+|++.+|
T Consensus       336 ~h~~~v~~v~~~~~g~~l~s~s~D~-~i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~l~~~~~~~~l  395 (410)
T 1vyh_C          336 GHDNWVRGVLFHSGGKFILSCADDK-TLRVWDYKN-------K----------RCMKTLN-A-HEHFVTSLDFHKTAPYV  395 (410)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTT-EEEEECCTT-------S----------CCCEEEE-C-CSSCEEEEEECSSSSCE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEECCC-------C----------ceEEEEc-C-CCCcEEEEEEcCCCCEE
Confidence            9999999999999999999999966 599999854       2          3445554 3 34579999999999999


Q ss_pred             EEEeCCCcEEEEeC
Q 004255          447 AIVSSKGTCHVFVL  460 (765)
Q Consensus       447 as~S~dgTVhIwdl  460 (765)
                      ++++.||+|+||++
T Consensus       396 ~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          396 VTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEETTSEEEEEC-
T ss_pred             EEEeCCCcEEEEeC
Confidence            99999999999986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=3.4e-24  Score=226.30  Aligned_cols=252  Identities=13%  Similarity=0.070  Sum_probs=187.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..++.+.|..+.|..       +++.|++|..+| ++|||++ .+.....+..|.++|..+++.|+             .
T Consensus         9 ~~~h~~~V~~~~fsp-------~~~~l~s~~~dg~v~lWd~~-~~~~~~~~~~~~~~v~~~~~~~~-------------~   67 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHP-------TEPWVLTTLYSGRVELWNYE-TQVEVRSIQVTETPVRAGKFIAR-------------K   67 (304)
T ss_dssp             EEEECSCEEEEEECS-------SSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGG-------------G
T ss_pred             ecCCCCceEEEEECC-------CCCEEEEEcCCCcEEEEECC-CCceeEEeeccCCcEEEEEEeCC-------------C
Confidence            345778899999965       356777777766 9999995 56677788889999999999974             2


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV  207 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV  207 (765)
                      .+|++.+.                                 +++|++||+.+++++.+++.+ ..|.+|++++  ++|++
T Consensus        68 ~~l~s~s~---------------------------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  114 (304)
T 2ynn_A           68 NWIIVGSD---------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS  114 (304)
T ss_dssp             TEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             CEEEEECC---------------------------------CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEE
Confidence            36655221                                 369999999999999999865 6899999998  57776


Q ss_pred             Ee-CCeEEEEECCCCcee-EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255          208 GL-ATQIYCFDALTLENK-FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (765)
Q Consensus       208 ~~-~~~I~iwD~~t~~~l-~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s  285 (765)
                      +. ++.|++||+.+...+ .++..|..+             ...++++|       .+                      
T Consensus       115 gs~D~~v~lWd~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~----------------------  152 (304)
T 2ynn_A          115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------VMCVAFNP-------KD----------------------  152 (304)
T ss_dssp             EETTSCEEEEEGGGTTEEEEEECCCCSC-------------EEEEEECT-------TC----------------------
T ss_pred             ECCCCeEEEEECCCCcchhhhhcccCCc-------------EEEEEECC-------CC----------------------
Confidence            65 567999999887443 444455431             12333322       10                      


Q ss_pred             cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (765)
Q Consensus       286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~  365 (765)
                           +.                                                .+++++.||+|+|||+.++.....+
T Consensus       153 -----~~------------------------------------------------~l~sgs~D~~v~iwd~~~~~~~~~~  179 (304)
T 2ynn_A          153 -----PS------------------------------------------------TFASGCLDRTVKVWSLGQSTPNFTL  179 (304)
T ss_dssp             -----TT------------------------------------------------EEEEEETTSEEEEEETTCSSCSEEE
T ss_pred             -----CC------------------------------------------------EEEEEeCCCeEEEEECCCCCcccee
Confidence                 00                                                0123457899999999887766555


Q ss_pred             c-cCCCCeEEEEECC--CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255          366 K-AHTSPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (765)
Q Consensus       366 ~-aH~~~IsaLaFSp--dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (765)
                      . +|...|.+++|+|  ++.+||||+.|+ .|+|||+..       +          .++..+. |+ ...|.+++|+|+
T Consensus       180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-~i~iWd~~~-------~----------~~~~~~~-~h-~~~v~~~~~~p~  239 (304)
T 2ynn_A          180 TTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQT-------K----------SCVATLE-GH-MSNVSFAVFHPT  239 (304)
T ss_dssp             ECCCTTCEEEEEECCSTTCCEEEEEETTS-EEEEEETTT-------T----------EEEEEEE-CC-SSCEEEEEECSS
T ss_pred             ccCCcCcEEEEEEEEcCCCCEEEEEcCCC-eEEEEeCCC-------C----------ccceeeC-CC-CCCEEEEEECCC
Confidence            4 5678999999987  788999999966 599999965       3          4666765 43 456999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255          443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       443 g~~Las~S~dgTVhIwdl~~~gg~~~~~~h  472 (765)
                      +++|++++.||+|+|||+........+..|
T Consensus       240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence            999999999999999999876554444444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=4e-24  Score=232.89  Aligned_cols=223  Identities=14%  Similarity=0.115  Sum_probs=164.1

Q ss_pred             cEEEEEccCCCcceEeeee--------ccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCc
Q 004255           85 GFQVLDVEDASNFNELVSK--------RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV  156 (765)
Q Consensus        85 G~qVWdv~~~g~~~ells~--------~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~  156 (765)
                      .+++|+++...+..+.+..        ++..|+.++|+|+.             .+||+++++                 
T Consensus       105 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-------------~~la~as~~-----------------  154 (365)
T 4h5i_A          105 HLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-------------TVAAIASSK-----------------  154 (365)
T ss_dssp             CEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-------------SCEEEEESC-----------------
T ss_pred             cEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-------------CEEEEEECC-----------------
Confidence            4999999765444433332        23568999999863             266664432                 


Q ss_pred             ccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcc
Q 004255          157 RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQ  234 (765)
Q Consensus       157 r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~  234 (765)
                                    .+++|+|||+++++++.+++++..|++|+|+|  ++|+++.++.+.+|+..+++.+......... 
T Consensus       155 --------------~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~-  219 (365)
T 4h5i_A          155 --------------VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKN-  219 (365)
T ss_dssp             --------------SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTT-
T ss_pred             --------------CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCC-
Confidence                          14799999999999999999989999999998  7899998899999999988765543221110 


Q ss_pred             cCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255          235 LAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (765)
Q Consensus       235 ~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt  312 (765)
                                .....++|+|  ++|+.++.+                                                 
T Consensus       220 ----------~~v~~v~fspdg~~l~~~s~d-------------------------------------------------  240 (365)
T 4h5i_A          220 ----------WSLSKINFIADDTVLIAASLK-------------------------------------------------  240 (365)
T ss_dssp             ----------EEEEEEEEEETTEEEEEEEES-------------------------------------------------
T ss_pred             ----------CCEEEEEEcCCCCEEEEEecC-------------------------------------------------
Confidence                      0123455554  334333211                                                 


Q ss_pred             ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE----EEEeccCCCCeEEEEECCCCCEEEEEE
Q 004255          313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTSPISALCFDPSGTLLVTAS  388 (765)
Q Consensus       313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~----i~~~~aH~~~IsaLaFSpdG~lLATaS  388 (765)
                                                      ......+++||+.....    ...+.+|..+|++|+|||||++||+|+
T Consensus       241 --------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          241 --------------------------------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             --------------------------------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             --------------------------------CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence                                            01123577888766542    456789999999999999999999999


Q ss_pred             cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       389 ~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .|++ |+|||+.+       +          ..+..+.+|+. ..|++|+|||||++||++|.|+||+||+|..
T Consensus       289 ~D~~-V~iwd~~~-------~----------~~~~~~~~gH~-~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          289 NDNS-IALVKLKD-------L----------SMSKIFKQAHS-FAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTSC-EEEEETTT-------T----------EEEEEETTSSS-SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCE-EEEEECCC-------C----------cEEEEecCccc-CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9775 99999965       3          56777766754 5799999999999999999999999999964

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.93  E-value=2e-24  Score=234.42  Aligned_cols=244  Identities=12%  Similarity=0.046  Sum_probs=168.1

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceE----eeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNE----LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~e----lls~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      +.+.|..+.|..       .+++|+.+.++.++|||+.. ++...    ....|.++|.+|++.|+.             
T Consensus        93 ~~~~V~~~~~s~-------d~~~l~~s~dg~v~lWd~~~-~~~~~~~~~~~~~h~~~V~~v~~spdg-------------  151 (357)
T 4g56_B           93 TEAGVTDVAWVS-------EKGILVASDSGAVELWEILE-KESLLVNKFAKYEHDDIVKTLSVFSDG-------------  151 (357)
T ss_dssp             CSSCEEEEEEET-------TTEEEEEETTSCEEEC---------CCCCEEECCCSSCEEEEEECSSS-------------
T ss_pred             CCCCEEEEEEcC-------CCCEEEEECCCEEEEeeccc-cceeEEEeeccCCCCCCEEEEEECCCC-------------
Confidence            456677777754       25666666556699999964 33222    233678999999999752             


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---CeEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVA  206 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~~La  206 (765)
                      .+|++.+.                                 +++|++||+++++++..++.+ ..|.+|++++   .+++
T Consensus       152 ~~l~sgs~---------------------------------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~  198 (357)
T 4g56_B          152 TQAVSGGK---------------------------------DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL  198 (357)
T ss_dssp             SEEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred             CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence            36654221                                 368999999999999999865 6899999976   3565


Q ss_pred             EE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255          207 VG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (765)
Q Consensus       207 V~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s  285 (765)
                      ++ .++.|++||+.+++....+......           .....++++|       +                       
T Consensus       199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~-----------~~v~~v~~sp-------~-----------------------  237 (357)
T 4g56_B          199 SCGEDGRILLWDTRKPKPATRIDFCASD-----------TIPTSVTWHP-------E-----------------------  237 (357)
T ss_dssp             EEETTSCEEECCTTSSSCBCBCCCTTCC-----------SCEEEEEECT-------T-----------------------
T ss_pred             eeccCCceEEEECCCCceeeeeeecccc-----------ccccchhhhh-------c-----------------------
Confidence            54 4568999999988765444321110           0011222221       1                       


Q ss_pred             cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (765)
Q Consensus       286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~  365 (765)
                          ++.+                                                ++.+..||.|+|||+.+++.+..+
T Consensus       238 ----~~~~------------------------------------------------la~g~~d~~i~~wd~~~~~~~~~~  265 (357)
T 4g56_B          238 ----KDDT------------------------------------------------FACGDETGNVSLVNIKNPDSAQTS  265 (357)
T ss_dssp             ----STTE------------------------------------------------EEEEESSSCEEEEESSCGGGCEEE
T ss_pred             ----ccce------------------------------------------------EEEeecccceeEEECCCCcEeEEE
Confidence                1100                                                123456889999999999999999


Q ss_pred             ccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CC
Q 004255          366 KAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YS  443 (765)
Q Consensus       366 ~aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg  443 (765)
                      .+|..+|.+|+|+|+| ++|||+|.|++ |+|||+..       +          +.+ ... + |...|++|+||| |+
T Consensus       266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~-------~----------~~~-~~~-~-H~~~V~~vafsP~d~  324 (357)
T 4g56_B          266 AVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADF-------S----------EVF-RDL-S-HRDFVTGVAWSPLDH  324 (357)
T ss_dssp             CCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTS-------C----------EEE-EEC-C-CSSCEEEEEECSSST
T ss_pred             eccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCC-------C----------cEe-EEC-C-CCCCEEEEEEeCCCC
Confidence            9999999999999997 68999999775 99999864       3          333 332 4 446799999998 89


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCC
Q 004255          444 QWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      ++||+++.||+|+||++...+..
T Consensus       325 ~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          325 SKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             TEEEEEETTSCEEEEECC-----
T ss_pred             CEEEEEcCCCeEEEEECCCCCcc
Confidence            99999999999999999876544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.93  E-value=2e-23  Score=222.22  Aligned_cols=267  Identities=14%  Similarity=0.107  Sum_probs=182.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC----cceEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGF  126 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g----~~~ells~~dg~V~~v~~lP~p~~~~~~d~f  126 (765)
                      .++|++.|..+.|..    +  .+++|++|..+| ++|||+....    .....+..|.++|..+++.|+.         
T Consensus        13 l~gH~~~V~~l~~~~----~--~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg---------   77 (319)
T 3frx_A           13 LEGHNGWVTSLATSA----G--QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG---------   77 (319)
T ss_dssp             ECCCSSCEEEEEECS----S--CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS---------
T ss_pred             EccccceEEEEEccC----C--CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC---------
Confidence            567899999888854    1  246788888776 9999995322    2345678899999999998752         


Q ss_pred             cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--C
Q 004255          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R  203 (765)
Q Consensus       127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~  203 (765)
                          .+|+..+.                                 +++|+|||+++++++.++..+ ..|.++++++  +
T Consensus        78 ----~~l~s~s~---------------------------------D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~  120 (319)
T 3frx_A           78 ----AYALSASW---------------------------------DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS  120 (319)
T ss_dssp             ----SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC
T ss_pred             ----CEEEEEeC---------------------------------CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC
Confidence                36655221                                 369999999999999999855 6899999987  5


Q ss_pred             eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCC
Q 004255          204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (765)
Q Consensus       204 ~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~  282 (765)
                      +|+++. ++.|++||+. ++++.++..|..+             ...+++.|       ...                  
T Consensus       121 ~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~-------------v~~~~~~~-------~~~------------------  161 (319)
T 3frx_A          121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDW-------------VSQVRVVP-------NEK------------------  161 (319)
T ss_dssp             EEEEEETTSCEEEEETT-SCEEEEECCCSSC-------------EEEEEECC-------C--------------------
T ss_pred             EEEEEeCCCeEEEEECC-CCeEEEEeccCCc-------------EEEEEEcc-------CCC------------------
Confidence            677655 5679999986 4566666655442             12223221       100                  


Q ss_pred             CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i  362 (765)
                         ..+. +                                                ..+++++.||+|++||+.+.+..
T Consensus       162 ---~~~~-~------------------------------------------------~~l~s~~~d~~i~~wd~~~~~~~  189 (319)
T 3frx_A          162 ---ADDD-S------------------------------------------------VTIISAGNDKMVKAWNLNQFQIE  189 (319)
T ss_dssp             --------C------------------------------------------------CEEEEEETTSCEEEEETTTTEEE
T ss_pred             ---CCCC-c------------------------------------------------cEEEEEeCCCEEEEEECCcchhh
Confidence               0000 0                                                01234567999999999999999


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc---CCCC-CCccccCC----------cceEEEE----
Q 004255          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR---SGSG-NHKYDWNS----------SHVHLYK----  424 (765)
Q Consensus       363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~---~~sG-~~~~~~~~----------s~~~l~~----  424 (765)
                      ..+.+|..+|.+++|+|+|++|||++.|| .|+|||+......   .... .....++.          ...+++.    
T Consensus       190 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~  268 (319)
T 3frx_A          190 ADFIGHNSNINTLTASPDGTLIASAGKDG-EIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ  268 (319)
T ss_dssp             EEECCCCSCEEEEEECTTSSEEEEEETTC-EEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTE
T ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC
Confidence            99999999999999999999999999966 5999998652100   0000 00000000          0112222    


Q ss_pred             -----Eecc------cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          425 -----LHRG------ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       425 -----l~rG------~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                           ++..      .+...|.+++|||||++|++++.||+|+|||+.+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence                 2111      0123588999999999999999999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=1.1e-23  Score=221.79  Aligned_cols=264  Identities=11%  Similarity=0.103  Sum_probs=181.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~-~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..+|++.|.-+.|+.       +++.|++|..+| ++|||++. ..++...+..|.++|..|++.|..           .
T Consensus         5 ~~~h~~~V~~~~~s~-------~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-----------~   66 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDY-------YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F   66 (297)
T ss_dssp             CCSCSSCEEEEEECT-------TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-----------G
T ss_pred             ccCCcCceEEEEECC-------CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-----------c
Confidence            457889999999975       256788888776 99999964 235667888999999999997521           1


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCCEEEEEecC----
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP----  202 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~-~s~V~sV~~s~----  202 (765)
                      ..+||..+.                                 +++|+|||+++++  .+.++.. ...|.+|++++    
T Consensus        67 g~~l~s~s~---------------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g  113 (297)
T 2pm7_B           67 GTILASCSY---------------------------------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG  113 (297)
T ss_dssp             CSEEEEEET---------------------------------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC
T ss_pred             CCEEEEEcC---------------------------------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC
Confidence            236665321                                 3699999999874  5566664 46899999986    


Q ss_pred             CeEEEEe-CCeEEEEECCCCce--eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCC
Q 004255          203 RIVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP  279 (765)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~t~~~--l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~  279 (765)
                      ++|+++. ++.|++||+.+.+.  ...+..|..+             ...++++|......         +.        
T Consensus       114 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~-------------v~~~~~~p~~~~~~---------~~--------  163 (297)
T 2pm7_B          114 PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEED---------GE--------  163 (297)
T ss_dssp             SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC-------------EEEEEECCCC-----------------------
T ss_pred             cEEEEEECCCcEEEEEecCCCceeeeeeecccCc-------------cceEeecCCccccc---------cc--------
Confidence            3677655 56899999987632  3444445431             23344443110000         00        


Q ss_pred             CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (765)
Q Consensus       280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~  359 (765)
                                 +                 .           .          ..    ....+++++.||+|+|||+.++
T Consensus       164 -----------~-----------------~-----------~----------~~----~~~~l~sgs~D~~v~lwd~~~~  190 (297)
T 2pm7_B          164 -----------H-----------------N-----------G----------TK----ESRKFVTGGADNLVKIWKYNSD  190 (297)
T ss_dssp             -----------------------------------------------------------CCEEEEEETTSCEEEEEEETT
T ss_pred             -----------C-----------------C-----------C----------CC----CcceEEEEcCCCcEEEEEEcCC
Confidence                       0                 0           0          00    0001345678999999999876


Q ss_pred             c----EEEEeccCCCCeEEEEECCCC---CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 004255          360 A----IISQFKAHTSPISALCFDPSG---TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA  432 (765)
Q Consensus       360 ~----~i~~~~aH~~~IsaLaFSpdG---~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a  432 (765)
                      +    .+..|.+|..+|.+|+|+|++   .+|||+|.|++ |+|||+....     +         ......+....+..
T Consensus       191 ~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~~-----~---------~~~~~~~~~~~~~~  255 (297)
T 2pm7_B          191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNEQ-----G---------PWKKTLLKEEKFPD  255 (297)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTT-----S---------CCEEEESSSSCCSS
T ss_pred             CceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCCC-----C---------ccceeeeecccCCC
Confidence            6    677899999999999999995   89999999765 9999985410     1         01111221112345


Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       433 ~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      .|++++|+|||++||+++.|++|+||+....|
T Consensus       256 ~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g  287 (297)
T 2pm7_B          256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (297)
T ss_dssp             CEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence            79999999999999999999999999987543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=1.7e-23  Score=226.42  Aligned_cols=256  Identities=11%  Similarity=0.039  Sum_probs=189.7

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||+. .++....+..+...|..+++.|+             .
T Consensus        60 l~gH~~~V~~~~~s~-------d~~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~~~~~v~~~~~sp~-------------g  118 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCK-------DKRRIVSSSQDGKVIVWDSF-TTNKEHAVTMPCTWVMACAYAPS-------------G  118 (354)
T ss_dssp             EECCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCEEEECTT-------------S
T ss_pred             ecCCCCeEEEEEECC-------CCCEEEEEeCCCeEEEEECC-CCCcceEEecCCCCEEEEEECCC-------------C
Confidence            467899999999965       256788888877 9999985 56677778888899999999975             2


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC------eEEEEEe-CCCCEEEEEecC-
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH------CYEHVLR-FRSSVCMVRCSP-  202 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg------~~v~tL~-~~s~V~sV~~s~-  202 (765)
                      .+||+ ++                                .++++++|++...      .....+. +...|.++++++ 
T Consensus       119 ~~las-g~--------------------------------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  165 (354)
T 2pbi_B          119 CAIAC-GG--------------------------------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS  165 (354)
T ss_dssp             SEEEE-ES--------------------------------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSS
T ss_pred             CEEEE-ee--------------------------------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCC
Confidence            36654 21                                1368999998653      2344554 446899999987 


Q ss_pred             -CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCC
Q 004255          203 -RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (765)
Q Consensus       203 -~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~  280 (765)
                       +.|+++ .++.|++||+.+++++.++.+|..+             ...+++.|       +.                 
T Consensus       166 ~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~-----------------  208 (354)
T 2pbi_B          166 DMQILTASGDGTCALWDVESGQLLQSFHGHGAD-------------VLCLDLAP-------SE-----------------  208 (354)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEECC-------CS-----------------
T ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-------------eEEEEEEe-------CC-----------------
Confidence             455554 5678999999999998888876652             12233321       10                 


Q ss_pred             CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (765)
Q Consensus       281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~  360 (765)
                              . +.                                                .+++++.||.|++||+.+++
T Consensus       209 --------~-g~------------------------------------------------~l~sgs~Dg~v~~wd~~~~~  231 (354)
T 2pbi_B          209 --------T-GN------------------------------------------------TFVSGGCDKKAMVWDMRSGQ  231 (354)
T ss_dssp             --------S-CC------------------------------------------------EEEEEETTSCEEEEETTTCC
T ss_pred             --------C-CC------------------------------------------------EEEEEeCCCeEEEEECCCCc
Confidence                    0 00                                                01245678999999999999


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 004255          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (765)
Q Consensus       361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (765)
                      ++..+.+|..+|.+++|+|+|.+||||+.|++ |+|||+..       +          ..+..+........+.+++|+
T Consensus       232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          232 CVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRA-------D----------REVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEEC
T ss_pred             EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEEcCCCcccceeEEEEe
Confidence            99999999999999999999999999999775 99999964       2          244444322223368999999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       441 pDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      |||++|++++.|++|+|||+........+..|.
T Consensus       294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~  326 (354)
T 2pbi_B          294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE  326 (354)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred             CCCCEEEEEECCCcEEEEECCCCceEEEEECCC
Confidence            999999999999999999997654444455664

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.92  E-value=9.5e-23  Score=218.63  Aligned_cols=233  Identities=11%  Similarity=0.101  Sum_probs=174.9

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC---cceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g---~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      +...|..+.|..       .++.|++|..++ ++|||+....   .+...+..|.+.|.++.+.|+            . 
T Consensus        96 ~~~~v~~~~~s~-------~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------~-  155 (340)
T 1got_B           96 RSSWVMTCAYAP-------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD------------N-  155 (340)
T ss_dssp             SSSCEEEEEECT-------TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET------------T-
T ss_pred             CCccEEEEEECC-------CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC------------C-
Confidence            344455555543       356788887776 8999996432   244567788999999999863            1 


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV  207 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV  207 (765)
                       .|++.+.                                 +++|++||+++++.+.++..+ ..|.++++++  ++|++
T Consensus       156 -~l~s~s~---------------------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  201 (340)
T 1got_B          156 -QIVTSSG---------------------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             -EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             -cEEEEEC---------------------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence             3443221                                 368999999999999999854 6899999987  56776


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (765)
Q Consensus       208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~  284 (765)
                      +. ++.|++||+.++++..++..|..+             ...++++|  ++|                           
T Consensus       202 g~~d~~v~~wd~~~~~~~~~~~~h~~~-------------v~~v~~~p~~~~l---------------------------  241 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQTFTGHESD-------------INAICFFPNGNAF---------------------------  241 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSC-------------EEEEEECTTSSEE---------------------------
T ss_pred             EeCCCcEEEEECCCCeeEEEEcCCcCC-------------EEEEEEcCCCCEE---------------------------
Confidence            55 568999999999988888766542             23344433  111                           


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~  364 (765)
                                                                                ++++.||+|+|||+.+++.+..
T Consensus       242 ----------------------------------------------------------~s~s~d~~v~iwd~~~~~~~~~  263 (340)
T 1got_B          242 ----------------------------------------------------------ATGSDDATCRLFDLRADQELMT  263 (340)
T ss_dssp             ----------------------------------------------------------EEEETTSCEEEEETTTTEEEEE
T ss_pred             ----------------------------------------------------------EEEcCCCcEEEEECCCCcEEEE
Confidence                                                                      1345688999999999988777


Q ss_pred             ecc--CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255          365 FKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (765)
Q Consensus       365 ~~a--H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (765)
                      +..  +...|.+++|+|+|++|++++.|| .|+|||+..       +          ..+..+. |+ ...|.+++|+||
T Consensus       264 ~~~~~~~~~v~~~~~s~~g~~l~~g~~d~-~i~vwd~~~-------~----------~~~~~~~-~h-~~~v~~~~~s~d  323 (340)
T 1got_B          264 YSHDNIICGITSVSFSKSGRLLLAGYDDF-NCNVWDALK-------A----------DRAGVLA-GH-DNRVSCLGVTDD  323 (340)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE-CC-SSCEEEEEECTT
T ss_pred             EccCCcccceEEEEECCCCCEEEEECCCC-eEEEEEccc-------C----------cEeeEee-cC-CCcEEEEEEcCC
Confidence            753  345899999999999999999966 599999854       2          3555564 53 457999999999


Q ss_pred             CCEEEEEeCCCcEEEEe
Q 004255          443 SQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       443 g~~Las~S~dgTVhIwd  459 (765)
                      |++||+++.|++|+|||
T Consensus       324 g~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          324 GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEcCCccEEecC
Confidence            99999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.92  E-value=1e-22  Score=221.96  Aligned_cols=275  Identities=11%  Similarity=0.078  Sum_probs=188.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..+|++.|..+.|..       .++.|++|..+| ++|||+. .++....+..|...|..+++.|+.             
T Consensus        62 l~gH~~~V~~~~~sp-------~~~~l~s~s~D~~v~iWd~~-~~~~~~~~~~h~~~v~~~~~s~~g-------------  120 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTP-------EKNWIVSASQDGRLIVWNAL-TSQKTHAIKLHCPWVMECAFAPNG-------------  120 (380)
T ss_dssp             ECCCSSCEEEEEECT-------TSSCEEEEETTSEEEEEETT-TTEEEEEEECCCTTCCCCEECTTS-------------
T ss_pred             ccccccEEEEEEEcC-------CCCEEEEEeCCCeEEEEECC-CCccceEEecCCCCEEEEEECCCC-------------
Confidence            467889999999865       256788888876 9999995 566777888999999999998752             


Q ss_pred             CEEEEEEcCCCCC-----CC---CC------CCcCCCCCcccCCcCCCCCCCC---CCCCEEEEEECCCCeEEEEEe---
Q 004255          131 PFLLVVAGEDTNT-----LA---PG------QNRSHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHCYEHVLR---  190 (765)
Q Consensus       131 pLLavv~~d~~~~-----~~---~~------~~~~~~~~~r~g~~~~~~~~~~---~~p~tV~lWdlktg~~v~tL~---  190 (765)
                      .+||+.+.|....     ..   ..      ...++.+.+....+.+..+..+   ..+++|++||+++++.+..+.   
T Consensus       121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~  200 (380)
T 3iz6_a          121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF  200 (380)
T ss_dssp             SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred             CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence            3555422221100     00   00      0001111111111111111111   256899999999999998883   


Q ss_pred             ---CCCCEEEEEecC---CeEEEEe-CCeEEEEECC-CCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecC
Q 004255          191 ---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN  262 (765)
Q Consensus       191 ---~~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~-t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~  262 (765)
                         +...|.++.+++   ++|++|. ++.|++||+. +.+.+.++.+|..+             ...++++|       +
T Consensus       201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~  260 (380)
T 3iz6_a          201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD-------------INSVKFFP-------D  260 (380)
T ss_dssp             SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC-------------CCEEEECT-------T
T ss_pred             CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC-------------eEEEEEec-------C
Confidence               235899999865   6777665 5689999997 44666666666542             23344433       1


Q ss_pred             CceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccc
Q 004255          263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG  342 (765)
Q Consensus       263 ~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~  342 (765)
                      .                           .                                                 .+
T Consensus       261 ~---------------------------~-------------------------------------------------~l  264 (380)
T 3iz6_a          261 G---------------------------Q-------------------------------------------------RF  264 (380)
T ss_dssp             S---------------------------S-------------------------------------------------EE
T ss_pred             C---------------------------C-------------------------------------------------eE
Confidence            0                           0                                                 01


Q ss_pred             cccCCCCeEEEEECCCCcEEEEeccCCC-------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFKAHTS-------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW  415 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~aH~~-------~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~  415 (765)
                      ++++.||+|+|||+.+++.+..+..|..       .|.+++|+|+|++|++++.||. |+|||+..       +      
T Consensus       265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~-------~------  330 (380)
T 3iz6_a          265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLL-------A------  330 (380)
T ss_dssp             EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTT-------C------
T ss_pred             EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCC-------C------
Confidence            2345789999999999999888876533       4899999999999999999775 99999854       2      


Q ss_pred             CCcceEEEEEe---cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          416 NSSHVHLYKLH---RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       416 ~~s~~~l~~l~---rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                          ..+..+.   .+ +...|.+++|||||++|+++|.|++|+||++..
T Consensus       331 ----~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          331 ----EMVLNLGTLQNS-HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             ----CEEEEECCSCSS-CCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             ----ceEEEEecccCC-CCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence                3444542   23 345799999999999999999999999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.92  E-value=7.7e-23  Score=232.14  Aligned_cols=302  Identities=18%  Similarity=0.182  Sum_probs=202.1

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL  133 (765)
                      +...|..+.|..       +++.|++|..++ +++||.  .+++.+.+..|.++|..+++.|+             ..+|
T Consensus       261 ~~~~v~~v~~~~-------d~~~l~~~~~d~~i~~w~~--~~~~~~~~~~h~~~v~~~~~~~~-------------~~~l  318 (577)
T 2ymu_A          261 HSSSVNGVAFRP-------DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPD-------------GQTI  318 (577)
T ss_dssp             CSSCEEEEEECT-------TSSEEEEEETTSCEEEEET--TSCEEEEECCCSSCEEEEEECTT-------------SSEE
T ss_pred             CCCCEEEEEEcC-------CCCEEEEEeCCCEEEEEeC--CCcEEEEEecCCCCeEEEEECCC-------------CCEE
Confidence            344455555532       356788887776 999997  35677888899999999999874             2366


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCEEEEEecC--CeEEEEeC
Q 004255          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGLA  210 (765)
Q Consensus       134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~--~~LaV~~~  210 (765)
                      ++.+.                                 +++|++||+... .+..+. +...|.++++++  ++|+++..
T Consensus       319 ~t~~~---------------------------------d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  364 (577)
T 2ymu_A          319 ASASD---------------------------------DKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASD  364 (577)
T ss_dssp             EEEET---------------------------------TSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeC---------------------------------CCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeC
Confidence            55321                                 358999998654 455665 456899999987  67887764


Q ss_pred             -CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCce--ecCC-ccc--cCCCCCCCCC
Q 004255          211 -TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLL--LSNS-GRL--SPQNLTPSGV  282 (765)
Q Consensus       211 -~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~--~~~~-G~~--s~~~lt~~~~  282 (765)
                       +.|++||. +++++.++..|..+             ...++++|  ++||+++.+..  ++.. +..  ..........
T Consensus       365 dg~v~~~~~-~~~~~~~~~~~~~~-------------v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~  430 (577)
T 2ymu_A          365 DKTVKLWNR-NGQLLQTLTGHSSS-------------VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW  430 (577)
T ss_dssp             TSEEEEEET-TCCEEEEEECCSSC-------------EEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEE
T ss_pred             CCEEEEEcC-CCCEEEEecCCCCC-------------eEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeE
Confidence             57999995 67778888776652             35688888  88998876532  2221 111  0000111222


Q ss_pred             CCCcCCCCCcceeeehhhhh---hhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255          283 SPSTSPGGSSLVARYAMEHS---KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~---k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~  359 (765)
                      ...++|++..++... .+..   +.+.....+++.++.      .....+.++++++.    ++.+..||.|+|||. ++
T Consensus       431 ~~~~s~d~~~l~~~~-~d~~v~~w~~~~~~~~~~~~~~------~~v~~~~~spd~~~----las~~~d~~i~iw~~-~~  498 (577)
T 2ymu_A          431 GVAFSPDDQTIASAS-DDKTVKLWNRNGQLLQTLTGHS------SSVRGVAFSPDGQT----IASASDDKTVKLWNR-NG  498 (577)
T ss_dssp             EEEECTTSSEEEEEE-TTSEEEEEETTSCEEEEEECCS------SCEEEEEECTTSCE----EEEEETTSEEEEEET-TS
T ss_pred             EEEECCCCCEEEEEc-CCCEEEEEECCCCEEEEEcCCC------CCEEEEEEcCCCCE----EEEEeCCCEEEEEcC-CC
Confidence            334566554443211 1111   111111112332222      11223344454443    456788999999995 67


Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 004255          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF  439 (765)
Q Consensus       360 ~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF  439 (765)
                      +.+..+.+|..+|.+|+|+|||++|||++.|| .|+|||. +       |          ..+..+. |+ ...|++|+|
T Consensus       499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg-~v~lwd~-~-------~----------~~~~~~~-~h-~~~v~~~~f  557 (577)
T 2ymu_A          499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNR-N-------G----------QLLQTLT-GH-SSSVWGVAF  557 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTS-EEEEECT-T-------S----------CEEEEEE-CC-SSCEEEEEE
T ss_pred             CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC-EEEEEeC-C-------C----------CEEEEEc-CC-CCCEEEEEE
Confidence            88999999999999999999999999999966 5999996 2       3          4666664 53 467999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEe
Q 004255          440 SHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       440 SpDg~~Las~S~dgTVhIwd  459 (765)
                      +|||++|++++.|++|+|||
T Consensus       558 s~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          558 SPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.92  E-value=4.2e-23  Score=223.83  Aligned_cols=249  Identities=16%  Similarity=0.064  Sum_probs=174.8

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccC----------CCcceEeeeeccCCEEEEEEecCCCCCCCCC
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVED----------ASNFNELVSKRDGPVSFLQMQPFPVKDDGCE  124 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~----------~g~~~ells~~dg~V~~v~~lP~p~~~~~~d  124 (765)
                      ....|..+.|..       ++++|+.|.+..+++||...          ........-.++.+|..+++.|+        
T Consensus        29 ~~~~v~~~~fs~-------dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--------   93 (344)
T 4gqb_B           29 MERQLEAARYRS-------DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE--------   93 (344)
T ss_dssp             CCSEEEEEEECT-------TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT--------
T ss_pred             ccCCEEEEEECC-------CCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC--------
Confidence            456688888865       36788888877788887320          11111222345678999999974        


Q ss_pred             CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-----CCCCEEEEE
Q 004255          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCMVR  199 (765)
Q Consensus       125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-----~~s~V~sV~  199 (765)
                           + .|++ +++                                +++|+|||+.+++.+..++     +.+.|.+|+
T Consensus        94 -----~-~l~~-~s~--------------------------------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~  134 (344)
T 4gqb_B           94 -----R-GILV-ASD--------------------------------SGAVELWELDENETLIVSKFCKYEHDDIVSTVS  134 (344)
T ss_dssp             -----T-EEEE-EET--------------------------------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEE
T ss_pred             -----C-eEEE-EEC--------------------------------CCEEEEEeccCCCceeEeeccccCCCCCEEEEE
Confidence                 1 3443 221                                3699999999998766554     346899999


Q ss_pred             ecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCC
Q 004255          200 CSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN  276 (765)
Q Consensus       200 ~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~  276 (765)
                      |++  ++|+++. ++.|++||+.++++++++.+|..+             ...+++++       +.             
T Consensus       135 ~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-------------V~~~~~~~-------~~-------------  181 (344)
T 4gqb_B          135 VLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ-------------VTCVAASP-------HK-------------  181 (344)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECS-------SC-------------
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc-------------eEEEEecC-------CC-------------
Confidence            987  6788765 557999999999999988877652             22333322       10             


Q ss_pred             CCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255          277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF  356 (765)
Q Consensus       277 lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl  356 (765)
                                    ..                                                .+++++.||+|+|||+
T Consensus       182 --------------~~------------------------------------------------~l~s~s~D~~v~iwd~  199 (344)
T 4gqb_B          182 --------------DS------------------------------------------------VFLSCSEDNRILLWDT  199 (344)
T ss_dssp             --------------TT------------------------------------------------EEEEEETTSCEEEEET
T ss_pred             --------------CC------------------------------------------------ceeeeccccccccccc
Confidence                          00                                                0123456899999999


Q ss_pred             CCCcEEEEec--cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 004255          357 VTRAIISQFK--AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT  433 (765)
Q Consensus       357 ~s~~~i~~~~--aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~  433 (765)
                      .+++.+..+.  .|...+.+++|+| ++.+||+|+.|| .|+|||+..       +          ..+..+. |+ ...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-~v~~wd~~~-------~----------~~~~~~~-~h-~~~  259 (344)
T 4gqb_B          200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-TVSLVDTKS-------T----------SCVLSSA-VH-SQC  259 (344)
T ss_dssp             TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS-EEEEEESCC-------------------CCEEEE-CC-SSC
T ss_pred             cccceeeeeecceeeccceeeeecCCCCcceEEeccCC-cEEEEECCC-------C----------cEEEEEc-CC-CCC
Confidence            9999888875  4666899999999 467899999966 599999965       3          3555664 43 456


Q ss_pred             EEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          434 IQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       434 I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      |++|+|+||| ++||++|.|++|+|||+... ....+..|.
T Consensus       260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-~~~~~~~H~  299 (344)
T 4gqb_B          260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-ELFRSQAHR  299 (344)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTCC-EEEEECCCS
T ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCC-cEEEEcCCC
Confidence            9999999998 68999999999999998753 233345553

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.92  E-value=1.4e-22  Score=222.02  Aligned_cols=261  Identities=14%  Similarity=0.112  Sum_probs=180.1

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeecc------------------CCEEEEEEecC
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRD------------------GPVSFLQMQPF  116 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~d------------------g~V~~v~~lP~  116 (765)
                      +++.|..+.|..       +++.|++|.++.++||++. .+++...+..+.                  ..|.++++.|+
T Consensus        63 h~~~V~~v~fsp-------dg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d  134 (393)
T 1erj_A           63 HTSVVCCVKFSN-------DGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  134 (393)
T ss_dssp             CSSCCCEEEECT-------TSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             CCCEEEEEEECC-------CCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence            666677777744       4678999998889999995 455555554432                  24888888864


Q ss_pred             CCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCE
Q 004255          117 PVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSV  195 (765)
Q Consensus       117 p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V  195 (765)
                                   ..+||+.+.                                 +++|+|||+.+++.+..+..+ ..|
T Consensus       135 -------------g~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~h~~~v  168 (393)
T 1erj_A          135 -------------GKFLATGAE---------------------------------DRLIRIWDIENRKIVMILQGHEQDI  168 (393)
T ss_dssp             -------------SSEEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             -------------CCEEEEEcC---------------------------------CCeEEEEECCCCcEEEEEccCCCCE
Confidence                         236665221                                 368999999999999999855 689


Q ss_pred             EEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccc
Q 004255          196 CMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL  272 (765)
Q Consensus       196 ~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~  272 (765)
                      .++++++  ++|+++. ++.|++||+.++++..++..+..              ...++++|       .+         
T Consensus       169 ~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------------v~~~~~~~-------~~---------  218 (393)
T 1erj_A          169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--------------VTTVAVSP-------GD---------  218 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC--------------EEEEEECS-------TT---------
T ss_pred             EEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCC--------------cEEEEEEC-------CC---------
Confidence            9999987  5666654 66899999999987766642111              12233321       00         


Q ss_pred             cCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEE
Q 004255          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (765)
Q Consensus       273 s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~  352 (765)
                                        +.+                                                ++.+..||.|+
T Consensus       219 ------------------~~~------------------------------------------------l~~~s~d~~v~  232 (393)
T 1erj_A          219 ------------------GKY------------------------------------------------IAAGSLDRAVR  232 (393)
T ss_dssp             ------------------CCE------------------------------------------------EEEEETTSCEE
T ss_pred             ------------------CCE------------------------------------------------EEEEcCCCcEE
Confidence                              000                                                12345689999


Q ss_pred             EEECCCCcEEEEe-------ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          353 VKDFVTRAIISQF-------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       353 IwDl~s~~~i~~~-------~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      |||+.+++.+..+       .+|..+|.+++|+|+|++|++++.|| .|+|||+........     ........+...+
T Consensus       233 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~-----~~~~~~~~~~~~~  306 (393)
T 1erj_A          233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNANNKSD-----SKTPNSGTCEVTY  306 (393)
T ss_dssp             EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS-EEEEEEC--------------------CEEEEE
T ss_pred             EEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC-EEEEEECCCCCCccc-----ccCCCCCcceEEE
Confidence            9999999888777       68999999999999999999999966 599999864210000     0000011234444


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      . |+ ...|.+++|+||+++|++++.|++|+|||+........+.+|.
T Consensus       307 ~-~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~  352 (393)
T 1erj_A          307 I-GH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR  352 (393)
T ss_dssp             E-CC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             e-cc-cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC
Confidence            3 43 3569999999999999999999999999998754444555663

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.92  E-value=4e-22  Score=209.32  Aligned_cols=253  Identities=13%  Similarity=0.152  Sum_probs=187.7

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..+|++.|..+.|..       .++.|++|..+| ++|||+. .+++...+..|.++|..+++.|+.             
T Consensus        19 ~~gh~~~v~~~~~s~-------~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~-------------   77 (312)
T 4ery_A           19 LAGHTKAVSSVKFSP-------NGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS-------------   77 (312)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred             EcccCCcEEEEEECC-------CCCEEEEeeCCCeEEEEeCC-CcccchhhccCCCceEEEEEcCCC-------------
Confidence            456888999999965       256788887776 9999995 577888899999999999999752             


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV  207 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV  207 (765)
                      .+|++.+.                                 +++|++||+++++++..+..+ ..|.++.+++  ++|++
T Consensus        78 ~~l~s~~~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  124 (312)
T 4ery_A           78 NLLVSASD---------------------------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS  124 (312)
T ss_dssp             SEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             CEEEEECC---------------------------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            36654221                                 368999999999999999865 6899999987  57776


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                      +. ++.|++||+.+++++..+..|..+             ...++++|       +.                       
T Consensus       125 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~-----------------------  161 (312)
T 4ery_A          125 GSFDESVRIWDVKTGKCLKTLPAHSDP-------------VSAVHFNR-------DG-----------------------  161 (312)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECT-------TS-----------------------
T ss_pred             EeCCCcEEEEECCCCEEEEEecCCCCc-------------EEEEEEcC-------CC-----------------------
Confidence            55 568999999999888877665442             12233322       10                       


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~  366 (765)
                          .                                                 .++.+..||.|+|||+.+++.+..+.
T Consensus       162 ----~-------------------------------------------------~l~~~~~d~~i~~wd~~~~~~~~~~~  188 (312)
T 4ery_A          162 ----S-------------------------------------------------LIVSSSYDGLCRIWDTASGQCLKTLI  188 (312)
T ss_dssp             ----S-------------------------------------------------EEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ----C-------------------------------------------------EEEEEeCCCcEEEEECCCCceeeEEe
Confidence                0                                                 01133568899999999998887764


Q ss_pred             -cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCC
Q 004255          367 -AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYS  443 (765)
Q Consensus       367 -aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a--~I~slaFSpDg  443 (765)
                       .|..+|.+++|+|+|++|++++.|| .|+|||+..       +          ..+..+. ++...  .+....+.+++
T Consensus       189 ~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~-------~----------~~~~~~~-~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          189 DDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYSK-------G----------KCLKTYT-GHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             CSSCCCEEEEEECTTSSEEEEEETTT-EEEEEETTT-------T----------EEEEEEC-SSCCSSSCCCEEEECSSS
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCC-eEEEEECCC-------C----------cEEEEEE-ecCCceEEEEEEEEeCCC
Confidence             5677899999999999999999966 599999965       3          3455553 33221  13333344789


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      ++|++++.||+|+|||+........+..|.
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~  279 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHT  279 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred             cEEEEECCCCEEEEEECCCchhhhhhhccC
Confidence            999999999999999998765555566664

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.92  E-value=5.4e-23  Score=219.82  Aligned_cols=259  Identities=18%  Similarity=0.135  Sum_probs=179.0

Q ss_pred             ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (765)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~  176 (765)
                      +.+.+..|+++|.+|++.|+..         ....+|+..+                                 .+++|+
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~---------~~~~~l~tgs---------------------------------~D~~v~   61 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKK---------ENSETVVTGS---------------------------------LDDLVK   61 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC----------------CEEEEEE---------------------------------TTSCEE
T ss_pred             eeeecccCCCcEEEEEEecCCC---------CCCCEEEEEc---------------------------------CCCCEE
Confidence            3445567999999999987521         1123665422                                 136899


Q ss_pred             EEECCCCeEE--EEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 004255          177 FYSFQSHCYE--HVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (765)
Q Consensus       177 lWdlktg~~v--~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~  250 (765)
                      |||+.+++..  .+++.+ ..|.++++++  .+|+++. ++.|++||+.+++++.++..++..             ...+
T Consensus        62 vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~-------------~~~~  128 (321)
T 3ow8_A           62 VWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-------------AWTL  128 (321)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-------------CCCE
T ss_pred             EEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc-------------EEEE
Confidence            9999887654  345544 5899999987  5666654 668999999999998888766542             2458


Q ss_pred             EEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255          251 AVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (765)
Q Consensus       251 Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~  328 (765)
                      +++|  ++||+++.+..+     ..|+..+.            ...                .++..+      ......
T Consensus       129 ~~spdg~~l~~g~~dg~v-----~i~~~~~~------------~~~----------------~~~~~~------~~~v~~  169 (321)
T 3ow8_A          129 AFSPDSQYLATGTHVGKV-----NIFGVESG------------KKE----------------YSLDTR------GKFILS  169 (321)
T ss_dssp             EECTTSSEEEEECTTSEE-----EEEETTTC------------SEE----------------EEEECS------SSCEEE
T ss_pred             EECCCCCEEEEEcCCCcE-----EEEEcCCC------------cee----------------EEecCC------CceEEE
Confidence            8888  889988765311     11221110            000                001000      000112


Q ss_pred             ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (765)
Q Consensus       329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s  408 (765)
                      ..++++++    .++.+..||.|+|||+.+++.+..+.+|..+|.+|+|+|+|++||+|+.||+ |+|||+..       
T Consensus       170 ~~~spdg~----~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~-------  237 (321)
T 3ow8_A          170 IAYSPDGK----YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQH-------  237 (321)
T ss_dssp             EEECTTSS----EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTT-------
T ss_pred             EEECCCCC----EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCC-------
Confidence            22333333    2456788999999999999999999999999999999999999999999775 99999964       


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      +          ..+..+. |+ ...|.+++|+||+++|++++.|++|+|||+........+..|.
T Consensus       238 ~----------~~~~~~~-~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~  290 (321)
T 3ow8_A          238 A----------NLAGTLS-GH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ  290 (321)
T ss_dssp             C----------CEEEEEC-CC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             c----------ceeEEEc-CC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence            2          3455554 43 4579999999999999999999999999998755544555553

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.91  E-value=3.6e-22  Score=218.67  Aligned_cols=241  Identities=12%  Similarity=0.129  Sum_probs=174.0

Q ss_pred             EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEE
Q 004255           59 VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVA  137 (765)
Q Consensus        59 v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~  137 (765)
                      |..+.|..       +++.|++|..+| ++|||++ .+++...+..|.++|..+++.|+             ..+|++.+
T Consensus       126 v~~v~~s~-------dg~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~p~-------------~~~l~s~s  184 (393)
T 1erj_A          126 IRSVCFSP-------DGKFLATGAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPS-------------GDKLVSGS  184 (393)
T ss_dssp             EEEEEECT-------TSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTT-------------SSEEEEEE
T ss_pred             EEEEEECC-------CCCEEEEEcCCCeEEEEECC-CCcEEEEEccCCCCEEEEEEcCC-------------CCEEEEec
Confidence            55555543       367888888776 9999995 56777888999999999999874             23565422


Q ss_pred             cCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEEe-CCeE
Q 004255          138 GEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQI  213 (765)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~~-~~~I  213 (765)
                      .                                 +++|++||+++++++.++..+..|..+++++   ++|+++. ++.|
T Consensus       185 ~---------------------------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v  231 (393)
T 1erj_A          185 G---------------------------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV  231 (393)
T ss_dssp             T---------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred             C---------------------------------CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence            1                                 3699999999999999999999999999986   5777765 5679


Q ss_pred             EEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcc
Q 004255          214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSL  293 (765)
Q Consensus       214 ~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gsl  293 (765)
                      ++||+.+++++..+...... ...+     ......++|+|       +                               
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~-~~~h-----~~~v~~v~~~~-------~-------------------------------  267 (393)
T 1erj_A          232 RVWDSETGFLVERLDSENES-GTGH-----KDSVYSVVFTR-------D-------------------------------  267 (393)
T ss_dssp             EEEETTTCCEEEEEC-------CCC-----SSCEEEEEECT-------T-------------------------------
T ss_pred             EEEECCCCcEEEeecccccC-CCCC-----CCCEEEEEECC-------C-------------------------------
Confidence            99999999877665321110 0000     00011222221       0                               


Q ss_pred             eeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC------------CcE
Q 004255          294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------------RAI  361 (765)
Q Consensus       294 va~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s------------~~~  361 (765)
                                                               ++    .+++++.||.|+|||+.+            +.+
T Consensus       268 -----------------------------------------g~----~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~  302 (393)
T 1erj_A          268 -----------------------------------------GQ----SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC  302 (393)
T ss_dssp             -----------------------------------------SS----EEEEEETTSEEEEEEC---------------CE
T ss_pred             -----------------------------------------CC----EEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence                                                     00    112445788999999875            345


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (765)
Q Consensus       362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (765)
                      ...+.+|...|.+++|+|+|.+|++++.|| .|+|||+..       +          ..+..+. |+ ...|.+++|++
T Consensus       303 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-~v~iwd~~~-------~----------~~~~~l~-~h-~~~v~~v~~~~  362 (393)
T 1erj_A          303 EVTYIGHKDFVLSVATTQNDEYILSGSKDR-GVLFWDKKS-------G----------NPLLMLQ-GH-RNSVISVAVAN  362 (393)
T ss_dssp             EEEEECCSSCEEEEEECGGGCEEEEEETTS-EEEEEETTT-------C----------CEEEEEE-CC-SSCEEEEEECS
T ss_pred             eEEEecccCcEEEEEECCCCCEEEEEeCCC-eEEEEECCC-------C----------eEEEEEC-CC-CCCEEEEEecC
Confidence            667889999999999999999999999966 599999865       3          3566664 53 45699999986


Q ss_pred             ------CCCEEEEEeCCCcEEEEeCCC
Q 004255          442 ------YSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       442 ------Dg~~Las~S~dgTVhIwdl~~  462 (765)
                            |+++||+++.||+|+||++..
T Consensus       363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          363 GSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CcCcCCCCCEEEEECCCCcEEECcccc
Confidence                  789999999999999999865

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.91  E-value=6.7e-22  Score=217.91  Aligned_cols=273  Identities=14%  Similarity=0.131  Sum_probs=189.1

Q ss_pred             CeEEEEEecCcEEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           75 KQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        75 ~~vL~~G~~~G~qVWdv~~~g~~~ells--~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .++|++|.++.++|||++ ++++.+++.  .|.+.|.+|+|.|+             ..+||+.+.              
T Consensus       116 ~n~lAvgld~tV~lWd~~-tg~~~~~~~~~~~~~~V~sv~fspd-------------g~~lasgs~--------------  167 (420)
T 4gga_A          116 GNVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKE-------------GNYLAVGTS--------------  167 (420)
T ss_dssp             TSEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTT-------------SSEEEEEET--------------
T ss_pred             CCEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCcEEEEEECCC-------------CCEEEEEEC--------------
Confidence            569999998889999995 688888776  45578999999975             236765221              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEeC-CeEEEEECCCCc-eeEEEEe
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-TQIYCFDALTLE-NKFSVLT  229 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~~-~~I~iwD~~t~~-~l~tl~t  229 (765)
                                         +++|+|||++++++++++..+ ..|.++.+++++|+++.. ..|++||..+.. ...++..
T Consensus       168 -------------------Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~  228 (420)
T 4gga_A          168 -------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG  228 (420)
T ss_dssp             -------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred             -------------------CCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc
Confidence                               368999999999999999865 589999999999988765 579999988754 3455556


Q ss_pred             cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255          230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (765)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~  307 (765)
                      |...             ...+.+.+  ++|++++.+..+     ..|+..+......                       
T Consensus       229 h~~~-------------~~~~~~~~~g~~l~s~~~D~~v-----~i~~~~~~~~~~~-----------------------  267 (420)
T 4gga_A          229 HSQE-------------VCGLRWAPDGRHLASGGNDNLV-----NVWPSAPGEGGWV-----------------------  267 (420)
T ss_dssp             CSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEESSCCSSCSC-----------------------
T ss_pred             cccc-------------eeeeeecCCCCeeeeeeccccc-----eEEeeccccccce-----------------------
Confidence            5542             23456666  788887765311     1222211100000                       


Q ss_pred             ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 004255          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA  387 (765)
Q Consensus       308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATa  387 (765)
                       ..+.+..+.      +......+.+... .....+.+..||+|+|||+.+++++..+..| ..+.++.|+|++..|+++
T Consensus       268 -~~~~~~~~~------~~V~~~~~~p~~~-~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~  338 (420)
T 4gga_A          268 -PLQTFTQHQ------GAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG  338 (420)
T ss_dssp             -CSEEECCCS------SCEEEEEECTTCT-TEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEE
T ss_pred             -eeeeecccC------CceeeeeeCCCcc-cEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEE
Confidence             000000000      0000111111111 0111234678999999999999999988877 568899999999999987


Q ss_pred             E--cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          388 S--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       388 S--~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      +  .|+ .|+|||+..       +          .++.+|. || ...|++|+|||||++||+++.|+||+|||+....
T Consensus       339 sg~~d~-~I~iwd~~~-------~----------~~v~~l~-gH-~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          339 HGFAQN-QLVIWKYPT-------M----------AKVAELK-GH-TSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             ECTTTC-CEEEEETTT-------C----------CEEEEEC-CC-SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             EecCCC-EEEEEECCC-------C----------cEEEEEc-CC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            6  445 599999854       3          5777775 54 4579999999999999999999999999997643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.91  E-value=1.5e-22  Score=213.60  Aligned_cols=214  Identities=13%  Similarity=0.210  Sum_probs=166.6

Q ss_pred             ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (765)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~  176 (765)
                      +.+++..|.+.|..|++.|+             .++||+.+.                                 +++|+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~-------------~~~l~s~~~---------------------------------dg~v~   38 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPT-------------EPWVLTTLY---------------------------------SGRVE   38 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSS-------------SSEEEEEET---------------------------------TSEEE
T ss_pred             eEEeecCCCCceEEEEECCC-------------CCEEEEEcC---------------------------------CCcEE
Confidence            56789999999999999975             347765321                                 36999


Q ss_pred             EEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEE
Q 004255          177 FYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV  252 (765)
Q Consensus       177 lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Al  252 (765)
                      |||+.+++.+.++..+ .+|.+++|++  ++|+++. ++.|++||+.+++++.++..|+.+             ...+++
T Consensus        39 lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-------------v~~~~~  105 (304)
T 2ynn_A           39 LWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY-------------IRSIAV  105 (304)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEE
T ss_pred             EEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc-------------EEEEEE
Confidence            9999999999999865 5899999987  6777765 557999999999999998887652             234444


Q ss_pred             cc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCcc
Q 004255          253 GP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS  330 (765)
Q Consensus       253 sp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s  330 (765)
                      +|  ++|                                                                         
T Consensus       106 ~~~~~~l-------------------------------------------------------------------------  112 (304)
T 2ynn_A          106 HPTKPYV-------------------------------------------------------------------------  112 (304)
T ss_dssp             CSSSSEE-------------------------------------------------------------------------
T ss_pred             cCCCCEE-------------------------------------------------------------------------
Confidence            33  111                                                                         


Q ss_pred             CCCccccccccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255          331 PNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (765)
Q Consensus       331 ~s~~~~~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~s  408 (765)
                                  ++++.||+|+|||+.++ .....+.+|...|.+++|+| ++.+||||+.|+ .|+|||+..       
T Consensus       113 ------------~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-~v~iwd~~~-------  172 (304)
T 2ynn_A          113 ------------LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQ-------  172 (304)
T ss_dssp             ------------EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS-EEEEEETTC-------
T ss_pred             ------------EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC-eEEEEECCC-------
Confidence                        13456899999999887 45677899999999999999 689999999966 599999854       


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp--Dg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      +          ...+.+..++ ...|..++|+|  |+++|++++.|++|+|||+........+..|.
T Consensus       173 ~----------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~  228 (304)
T 2ynn_A          173 S----------TPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM  228 (304)
T ss_dssp             S----------SCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             C----------CccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC
Confidence            1          1334444443 34588899986  78999999999999999998766566677775

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.91  E-value=3.4e-22  Score=232.13  Aligned_cols=259  Identities=16%  Similarity=0.142  Sum_probs=183.5

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC-CcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA-SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~-g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||+... ..+...+..|.++|..|+|.|+.            
T Consensus        55 ~~~h~~~v~~~~~sp-------dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg------------  115 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSP-------SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES------------  115 (611)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS------------
T ss_pred             ecCCCCceEEEEECC-------CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC------------
Confidence            456788888888854       467999999887 999999532 23445677889999999999852            


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCC---eE
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR---IV  205 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~---~L  205 (765)
                       .+||+++.+..                             ...+|++||  +++.+.++..+ ..|.+|+|+|.   +|
T Consensus       116 -~~l~~~~~~~~-----------------------------~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l  163 (611)
T 1nr0_A          116 -KRIAAVGEGRE-----------------------------RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRI  163 (611)
T ss_dssp             -CEEEEEECCSS-----------------------------CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred             -CEEEEEECCCC-----------------------------ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEE
Confidence             26665432110                             014788888  46667777655 58999999983   46


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCC
Q 004255          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (765)
Q Consensus       206 aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~  282 (765)
                      +++. ++.|++||..+++++.++.+|..+             ...++|+|  ++||                        
T Consensus       164 ~s~s~D~~v~lwd~~~~~~~~~l~~H~~~-------------V~~v~fspdg~~la------------------------  206 (611)
T 1nr0_A          164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKF-------------VHSVRYNPDGSLFA------------------------  206 (611)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSC-------------EEEEEECTTSSEEE------------------------
T ss_pred             EEEeCCCeEEEEECCCCeEeeeeccccCc-------------eEEEEECCCCCEEE------------------------
Confidence            7655 567999999999888888777652             23455543  2222                        


Q ss_pred             CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i  362 (765)
                                                                                   +++.||+|+|||+.+++.+
T Consensus       207 -------------------------------------------------------------s~s~D~~i~lwd~~~g~~~  225 (611)
T 1nr0_A          207 -------------------------------------------------------------STGGDGTIVLYNGVDGTKT  225 (611)
T ss_dssp             -------------------------------------------------------------EEETTSCEEEEETTTCCEE
T ss_pred             -------------------------------------------------------------EEECCCcEEEEECCCCcEe
Confidence                                                                         3456889999999999999


Q ss_pred             EEec-------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC----C----------------------CC
Q 004255          363 SQFK-------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS----G----------------------SG  409 (765)
Q Consensus       363 ~~~~-------aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~----~----------------------sG  409 (765)
                      ..+.       +|..+|.+++|+|||++|||++.|+ +|+|||+.......    .                      .|
T Consensus       226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  304 (611)
T 1nr0_A          226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG  304 (611)
T ss_dssp             EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred             eeeccccccccccCCCEEEEEECCCCCEEEEEeCCC-eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence            8884       8999999999999999999999965 59999986521000    0                      00


Q ss_pred             CCccccCC-cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          410 NHKYDWNS-SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       410 ~~~~~~~~-s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      . -..|+. ....+.. ..|+ ...|++++|||||++|++++.|++|++||+...
T Consensus       305 ~-i~~~~~~~~~~~~~-~~gh-~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          305 F-INFVNPELGSIDQV-RYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             C-EEEEETTTTEEEEE-ECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             c-EEEEeCCCCCcceE-EcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence            0 000000 0011122 2343 457999999999999999999999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.91  E-value=9.2e-22  Score=212.90  Aligned_cols=222  Identities=14%  Similarity=0.095  Sum_probs=169.9

Q ss_pred             CCeEEEEEecCc-EEEEEccCC-----CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDA-----SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG  147 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~-----g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~  147 (765)
                      .+..|++|..++ ++||++...     ......+..|.+.|..+.+.|+.             ..|++.+.         
T Consensus       117 ~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~l~t~s~---------  174 (354)
T 2pbi_B          117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-------------MQILTASG---------  174 (354)
T ss_dssp             TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-------------SEEEEEET---------
T ss_pred             CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-------------CEEEEEeC---------
Confidence            467888888776 899998532     12445677899999999998742             25554332         


Q ss_pred             CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC----CeEEEEe-CCeEEEEECCCC
Q 004255          148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTL  221 (765)
Q Consensus       148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~t~  221 (765)
                                              +++|++||+++++++.++..+ ..|.++++++    ++|+++. ++.|++||+.++
T Consensus       175 ------------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~  230 (354)
T 2pbi_B          175 ------------------------DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG  230 (354)
T ss_dssp             ------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred             ------------------------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence                                    369999999999999999865 5898888865    4777655 568999999999


Q ss_pred             ceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255          222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM  299 (765)
Q Consensus       222 ~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~  299 (765)
                      +++.++..|..+             ...++++|  ++|                                          
T Consensus       231 ~~~~~~~~h~~~-------------v~~v~~~p~~~~l------------------------------------------  255 (354)
T 2pbi_B          231 QCVQAFETHESD-------------VNSVRYYPSGDAF------------------------------------------  255 (354)
T ss_dssp             CEEEEECCCSSC-------------EEEEEECTTSSEE------------------------------------------
T ss_pred             cEEEEecCCCCC-------------eEEEEEeCCCCEE------------------------------------------
Confidence            988888766552             23344433  111                                          


Q ss_pred             hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEE
Q 004255          300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCF  377 (765)
Q Consensus       300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH--~~~IsaLaF  377 (765)
                                                                 ++++.||+|+|||+.+++.+..+..+  ...+.+++|
T Consensus       256 -------------------------------------------~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          256 -------------------------------------------ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             -------------------------------------------EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             -------------------------------------------EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence                                                       23456889999999998887777644  457999999


Q ss_pred             CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 004255          378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV  457 (765)
Q Consensus       378 SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhI  457 (765)
                      +|+|++|++++.|++ |+|||+..       +          ..+..+. |+ ...|.+++|||||++||+++.|++|+|
T Consensus       293 s~~g~~l~~g~~d~~-i~vwd~~~-------~----------~~~~~l~-~h-~~~v~~l~~spdg~~l~sgs~D~~v~v  352 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYT-INVWDVLK-------G----------SRVSILF-GH-ENRVSTLRVSPDGTAFCSGSWDHTLRV  352 (354)
T ss_dssp             CTTSSEEEEEETTSC-EEEEETTT-------C----------SEEEEEC-CC-SSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             eCCCCEEEEEECCCc-EEEEECCC-------C----------ceEEEEE-CC-CCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence            999999999999765 99999854       3          3555554 43 457999999999999999999999999


Q ss_pred             Ee
Q 004255          458 FV  459 (765)
Q Consensus       458 wd  459 (765)
                      |+
T Consensus       353 W~  354 (354)
T 2pbi_B          353 WA  354 (354)
T ss_dssp             EC
T ss_pred             cC
Confidence            96

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.91  E-value=7.4e-22  Score=212.39  Aligned_cols=257  Identities=16%  Similarity=0.163  Sum_probs=175.1

Q ss_pred             CCCCC-cEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcc--e-EeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255           53 EDLKD-QVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF--N-ELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        53 ~~~~~-~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~--~-ells~~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      .++++ .|..+.|..       ++++|++|..+| ++|||++. +..  . .+...|.+.|..+++.|+           
T Consensus        12 ~~h~~~~v~~l~~sp-------~g~~las~~~D~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~sp~-----------   72 (345)
T 3fm0_A           12 PAHPDSRCWFLAWNP-------AGTLLASCGGDRRIRIWGTEG-DSWICKSVLSEGHQRTVRKVAWSPC-----------   72 (345)
T ss_dssp             CCSTTSCEEEEEECT-------TSSCEEEEETTSCEEEEEEET-TEEEEEEEECSSCSSCEEEEEECTT-----------
T ss_pred             cCCCCCcEEEEEECC-------CCCEEEEEcCCCeEEEEEcCC-CcceeeeeeccccCCcEEEEEECCC-----------
Confidence            45566 777777854       356788888776 99999964 322  2 233578899999999975           


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeCC-CCEEEEEecC--
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRFR-SSVCMVRCSP--  202 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~~-s~V~sV~~s~--  202 (765)
                        ..+||+.+.                                 +++|+|||+.+++  ++.++..+ ..|.+|++++  
T Consensus        73 --g~~l~s~s~---------------------------------D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  117 (345)
T 3fm0_A           73 --GNYLASASF---------------------------------DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG  117 (345)
T ss_dssp             --SSEEEEEET---------------------------------TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS
T ss_pred             --CCEEEEEEC---------------------------------CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC
Confidence              236665321                                 3689999998774  56777754 6899999987  


Q ss_pred             CeEEEEe-CCeEEEEECCCCceeE---EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCC
Q 004255          203 RIVAVGL-ATQIYCFDALTLENKF---SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT  278 (765)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~t~~~l~---tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt  278 (765)
                      ++|+++. ++.|++||+.+.+...   .+..|..+             ...++++|       +.               
T Consensus       118 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~-------------v~~~~~~p-------~~---------------  162 (345)
T 3fm0_A          118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD-------------VKHVVWHP-------SQ---------------  162 (345)
T ss_dssp             SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC-------------EEEEEECS-------SS---------------
T ss_pred             CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC-------------eEEEEECC-------CC---------------
Confidence            6777765 5679999998765332   23233221             12233322       10               


Q ss_pred             CCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC
Q 004255          279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT  358 (765)
Q Consensus       279 ~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s  358 (765)
                                  .                                                 .++.+..||+|+|||+.+
T Consensus       163 ------------~-------------------------------------------------~l~s~s~d~~i~~w~~~~  181 (345)
T 3fm0_A          163 ------------E-------------------------------------------------LLASASYDDTVKLYREEE  181 (345)
T ss_dssp             ------------S-------------------------------------------------CEEEEETTSCEEEEEEET
T ss_pred             ------------C-------------------------------------------------EEEEEeCCCcEEEEEecC
Confidence                        0                                                 012345688999999988


Q ss_pred             Cc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 004255          359 RA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD  436 (765)
Q Consensus       359 ~~--~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~s  436 (765)
                      ++  +...+.+|..+|.+|+|+|+|++||+++.|++ |+|||+....  ...+...........++..+. |.+...|++
T Consensus       182 ~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~  257 (345)
T 3fm0_A          182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPG--NEQGVACSGSDPSWKCICTLS-GFHSRTIYD  257 (345)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTT--CTTCCCCC---CEEEEEEEEC-SSCSSCEEE
T ss_pred             CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCC--CCccceeeccCCccceeEEec-CCCCCcEEE
Confidence            75  45789999999999999999999999999775 9999973210  000000000011123444443 445567999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          437 ICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       437 laFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ++|+|++.+|++++.|++|+||++.+.
T Consensus       258 v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          258 IAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             EEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             EEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence            999999999999999999999998753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=6.4e-22  Score=209.13  Aligned_cols=316  Identities=10%  Similarity=-0.019  Sum_probs=200.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeee-----ccCCEEEEEEecCCCCCCCCCCc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSK-----RDGPVSFLQMQPFPVKDDGCEGF  126 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~-----~dg~V~~v~~lP~p~~~~~~d~f  126 (765)
                      .+++.+.|..+.|....  ......+++.+..+.++|||+.. ++....+..     |++.|..+++.|+..        
T Consensus        14 ~~~h~~~v~~i~~~p~~--~~~~~~~~~~~~~~~v~vw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------   82 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHS--KEGDPLVFATVGSNRVTLYECHS-QGEIRLLQSYVDADADENFYTCAWTYDSN--------   82 (366)
T ss_dssp             ECTTCSCEEEEEECTTC--CTTSCEEEEEEETTEEEEEEECG-GGCEEEEEEEECSCTTCCEEEEEEEECTT--------
T ss_pred             ecCCCCceEEEEEeccc--CCCCceEEEECCCCEEEEEEcCC-CcEEEeeeeccccCCCCcEEEEEeccCCC--------
Confidence            35688999999997521  01234577777777899999964 445555554     447799999998631        


Q ss_pred             cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCEEEEEecC---
Q 004255          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---  202 (765)
Q Consensus       127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~---  202 (765)
                       ..+.+|++.+.                                 +++|++||+.+++.+..+. +...|.++++++   
T Consensus        83 -~~~~~l~~~~~---------------------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  128 (366)
T 3k26_A           83 -TSHPLLAVAGS---------------------------------RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP  128 (366)
T ss_dssp             -TCCEEEEEEET---------------------------------TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT
T ss_pred             -CCCCEEEEecC---------------------------------CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC
Confidence             11346655221                                 3689999999999999998 457999999976   


Q ss_pred             CeEEEEe-CCeEEEEECCCCceeEEEE---ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCC
Q 004255          203 RIVAVGL-ATQIYCFDALTLENKFSVL---TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQN  276 (765)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~t~~~l~tl~---t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~  276 (765)
                      ++|+++. ++.|++||+.+++.+..+.   .|..             ....++++|  ++|++++.+..+     ..|+.
T Consensus       129 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~l~~~~~dg~i-----~i~d~  190 (366)
T 3k26_A          129 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-------------EVLSADYDLLGEKIMSCGMDHSL-----KLWRI  190 (366)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-------------CEEEEEECTTSSEEEEEETTSCE-----EEEES
T ss_pred             CEEEEEeCCCeEEEEEeecCeEEEEecccccccC-------------ceeEEEECCCCCEEEEecCCCCE-----EEEEC
Confidence            5777765 5689999999998887773   3333             235678887  788888765311     12221


Q ss_pred             CCCCCC-----CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeE
Q 004255          277 LTPSGV-----SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV  351 (765)
Q Consensus       277 lt~~~~-----s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V  351 (765)
                      .+....     ...++|.+..+... .    ..........+..      .......+.++      +..++.+..||.|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~------~~~~v~~~~~~------~~~l~~~~~d~~i  253 (366)
T 3k26_A          191 NSKRMMNAIKESYDYNPNKTNRPFI-S----QKIHFPDFSTRDI------HRNYVDCVRWL------GDLILSKSCENAI  253 (366)
T ss_dssp             CSHHHHHHHHHHHTCCGGGCSSCCC-C----EEECCCSEEECSS------CSSCCCEEEEE------TTEEEEECSSSEE
T ss_pred             CCCccccccceeEEecCCCCccccc-c----eeeccCccccccC------CcceEEEEEEc------CCEEEEEecCCEE
Confidence            110000     00000000000000 0    0000000000000      00111111111      1124567889999


Q ss_pred             EEEECCCCc--------------EEEEeccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 004255          352 VVKDFVTRA--------------IISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW  415 (765)
Q Consensus       352 ~IwDl~s~~--------------~i~~~~aH~~~IsaLaFSpd--G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~  415 (765)
                      ++||+.+++              .+..+.+|..+|.+++|+|+  |++||+++.||. |+|||+...       .     
T Consensus       254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-i~vwd~~~~-------~-----  320 (366)
T 3k26_A          254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDLEVE-------D-----  320 (366)
T ss_dssp             EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-EEEEECCSS-------S-----
T ss_pred             EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-EEEEECCCC-------C-----
Confidence            999998764              48889999999999999999  999999999775 999999652       0     


Q ss_pred             CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                       .....+..+....+...|++++|+||+++|++++.||+|+|||+.
T Consensus       321 -~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          321 -PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             -GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             -CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence             001244455422224679999999999999999999999999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.91  E-value=2e-22  Score=234.00  Aligned_cols=241  Identities=12%  Similarity=0.126  Sum_probs=178.5

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL  134 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLa  134 (765)
                      ++.++.-+.|+.       +++.|+.|..+.++|||+. .++...++..|.++|.++++.|+             ..+||
T Consensus        17 ~~g~~~~~~~sp-------dg~~l~~~~~~~v~l~~~~-~~~~~~~~~~h~~~v~~~~~spd-------------g~~la   75 (611)
T 1nr0_A           17 ARGTAVVLGNTP-------AGDKIQYCNGTSVYTVPVG-SLTDTEIYTEHSHQTTVAKTSPS-------------GYYCA   75 (611)
T ss_dssp             CTTCCCCCEECT-------TSSEEEEEETTEEEEEETT-CSSCCEEECCCSSCEEEEEECTT-------------SSEEE
T ss_pred             ccCceeEEeeCC-------CCCEEEeCCCCEEEEecCC-CcccCeEecCCCCceEEEEECCC-------------CcEEE
Confidence            455555555643       4678889988889999995 46677889999999999999985             23776


Q ss_pred             EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCCEEEEEecC--CeEEEEe
Q 004255          135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP--RIVAVGL  209 (765)
Q Consensus       135 vv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~-~s~V~sV~~s~--~~LaV~~  209 (765)
                      +...                                 +++|+|||+.+++  ...++.. ..+|.+|+|++  ++|+++.
T Consensus        76 sg~~---------------------------------d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~  122 (611)
T 1nr0_A           76 SGDV---------------------------------HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG  122 (611)
T ss_dssp             EEET---------------------------------TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             EEeC---------------------------------CCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEE
Confidence            5221                                 3699999997544  4556664 57999999998  6777655


Q ss_pred             CC-----eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255          210 AT-----QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (765)
Q Consensus       210 ~~-----~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~  284 (765)
                      ++     .|++||  +++.+.++.+|..+             ...++|+|       +.                     
T Consensus       123 ~~~~~~~~v~~wd--~~~~~~~l~gh~~~-------------v~~v~f~p-------~~---------------------  159 (611)
T 1nr0_A          123 EGRERFGHVFLFD--TGTSNGNLTGQARA-------------MNSVDFKP-------SR---------------------  159 (611)
T ss_dssp             CCSSCSEEEEETT--TCCBCBCCCCCSSC-------------EEEEEECS-------SS---------------------
T ss_pred             CCCCceeEEEEee--CCCCcceecCCCCC-------------ceEEEECC-------CC---------------------
Confidence            42     588887  45555555555431             23344433       10                     


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~  364 (765)
                            ..                                                .+++++.|++|+|||..+++.+..
T Consensus       160 ------~~------------------------------------------------~l~s~s~D~~v~lwd~~~~~~~~~  185 (611)
T 1nr0_A          160 ------PF------------------------------------------------RIISGSDDNTVAIFEGPPFKFKST  185 (611)
T ss_dssp             ------SC------------------------------------------------EEEEEETTSCEEEEETTTBEEEEE
T ss_pred             ------Ce------------------------------------------------EEEEEeCCCeEEEEECCCCeEeee
Confidence                  00                                                012345789999999999999999


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec------ccccccEEEEE
Q 004255          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR------GITSATIQDIC  438 (765)
Q Consensus       365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r------G~~~a~I~sla  438 (765)
                      |.+|...|.+++|+|||++||||+.|++ |+|||+..       |          ..+..+..      | +...|++++
T Consensus       186 l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~~-------g----------~~~~~~~~~~~~~~~-h~~~V~~v~  246 (611)
T 1nr0_A          186 FGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVD-------G----------TKTGVFEDDSLKNVA-HSGSVFGLT  246 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------C----------CEEEECBCTTSSSCS-SSSCEEEEE
T ss_pred             eccccCceEEEEECCCCCEEEEEECCCc-EEEEECCC-------C----------cEeeeeccccccccc-cCCCEEEEE
Confidence            9999999999999999999999999775 99999865       3          34555532      3 445799999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          439 FSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       439 FSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      |+|||++|++++.|++|+|||+.....
T Consensus       247 ~spdg~~l~s~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          247 WSPDGTKIASASADKTIKIWNVATLKV  273 (611)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence            999999999999999999999986543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.91  E-value=6e-23  Score=218.20  Aligned_cols=266  Identities=15%  Similarity=0.118  Sum_probs=173.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g-~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..+|++.|..+.|+.       .++.|++|..++ ++|||+.... .+...+..|.++|..|++.|..           .
T Consensus         9 ~~~H~~~V~~v~~s~-------~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-----------~   70 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDY-------YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-----------Y   70 (316)
T ss_dssp             -----CCEEEEEECG-------GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-----------G
T ss_pred             cccccCeEEEeeEcC-------CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-----------C
Confidence            457889999999976       256888888776 9999996432 2345678899999999997521           1


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCCEEEEEecC----
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP----  202 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~-~s~V~sV~~s~----  202 (765)
                      ..+|+..+.                                 +++|+|||+++++  .+.++.. ...|.+|++++    
T Consensus        71 ~~~l~s~s~---------------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g  117 (316)
T 3bg1_A           71 GNILASCSY---------------------------------DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG  117 (316)
T ss_dssp             SSCEEEEET---------------------------------TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC
T ss_pred             CCEEEEEEC---------------------------------CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC
Confidence            236665332                                 3689999999884  5666654 46899999987    


Q ss_pred             CeEEEEe-CCeEEEEECCCCceeEE---EEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCC
Q 004255          203 RIVAVGL-ATQIYCFDALTLENKFS---VLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT  278 (765)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~t~~~l~t---l~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt  278 (765)
                      .+|+++. ++.|++||+.+......   +..|..             ....++++|...     .               
T Consensus       118 ~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-------------~v~~~~~~~~~~-----~---------------  164 (316)
T 3bg1_A          118 LILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-------------GCNAVSWAPAVV-----P---------------  164 (316)
T ss_dssp             SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-------------CBCCCEECCCCC-----C---------------
T ss_pred             cEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-------------CcceEEEccccC-----C---------------
Confidence            3677765 56799999887532211   112221             112344433100     0               


Q ss_pred             CCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC
Q 004255          279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT  358 (765)
Q Consensus       279 ~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s  358 (765)
                                  +.++..                         +.+..     ..    ....+++++.||+|+|||+..
T Consensus       165 ------------~~~~~~-------------------------~~~~~-----~~----~~~~l~sgs~D~~v~lWd~~~  198 (316)
T 3bg1_A          165 ------------GSLIDH-------------------------PSGQK-----PN----YIKRFASGGCDNLIKLWKEEE  198 (316)
T ss_dssp             -------------------------------------------CCSCC-----CC----CCCBEECCBTTSBCCEEEECT
T ss_pred             ------------cccccc-------------------------ccccC-----cc----ccceEEEecCCCeEEEEEeCC
Confidence                        000000                         00000     00    001234677899999999976


Q ss_pred             C---cEEEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 004255          359 R---AIISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS  431 (765)
Q Consensus       359 ~---~~i~~~~aH~~~IsaLaFSpdG----~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~  431 (765)
                      .   +.+..|.+|..+|.+++|+|++    .+|||+|.|| .|+|||+....    .+.         .....+. + +.
T Consensus       199 ~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~-~v~iw~~~~~~----~~~---------~~~~~~~-~-~~  262 (316)
T 3bg1_A          199 DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG-RVFIWTCDDAS----SNT---------WSPKLLH-K-FN  262 (316)
T ss_dssp             TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC-EEEEEECSSTT----CCC---------CBCCEEE-E-CS
T ss_pred             CCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC-eEEEEEccCcc----ccc---------hhhhhhh-c-CC
Confidence            5   4677899999999999999997    8999999966 59999985410    000         0111121 2 24


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       432 a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ..|++++|+|||++||+++.|++|+||++...
T Consensus       263 ~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          263 DVVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             SCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            57999999999999999999999999998754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=7.1e-22  Score=209.78  Aligned_cols=262  Identities=11%  Similarity=0.103  Sum_probs=180.1

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~-~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..+|++.|..+.|+.       .++.|++|..+| ++|||++. .......+..|.++|.++++.|+.           .
T Consensus         7 ~~~h~~~v~~~~~s~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~   68 (379)
T 3jrp_A            7 ANAHNELIHDAVLDY-------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F   68 (379)
T ss_dssp             EEECCCCEEEEEECS-------SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----------G
T ss_pred             ecCCcccEEEEEEcC-------CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-----------C
Confidence            456889999999975       256888887766 99999963 344556778899999999998631           1


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCCEEEEEecCC---
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR---  203 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~-~~s~V~sV~~s~~---  203 (765)
                      ..+|++++.                                 +++|++||+.+++  .+..+. +...|.++++++.   
T Consensus        69 ~~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  115 (379)
T 3jrp_A           69 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG  115 (379)
T ss_dssp             CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred             CCEEEEecc---------------------------------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC
Confidence            236665332                                 3589999999997  666665 3469999999864   


Q ss_pred             -eEEEEe-CCeEEEEECCCCcee--EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCC
Q 004255          204 -IVAVGL-ATQIYCFDALTLENK--FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP  279 (765)
Q Consensus       204 -~LaV~~-~~~I~iwD~~t~~~l--~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~  279 (765)
                       +|+++. ++.|++||+.+.+..  ..+..|..+             ...++++|...+.....                
T Consensus       116 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~~~~~----------------  166 (379)
T 3jrp_A          116 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEEDGEH----------------  166 (379)
T ss_dssp             SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC-------------EEEEEECCCC-----------------------
T ss_pred             CEEEEecCCCcEEEEecCCCCceeeEEecCCCCc-------------eEEEEEcCccccccccc----------------
Confidence             566654 568999999887433  333334331             22344433111000000                


Q ss_pred             CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (765)
Q Consensus       280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~  359 (765)
                           ..                                             .++.    ..++.+..||.|+|||+.++
T Consensus       167 -----~~---------------------------------------------~~~~----~~l~~~~~dg~i~i~d~~~~  192 (379)
T 3jrp_A          167 -----NG---------------------------------------------TKES----RKFVTGGADNLVKIWKYNSD  192 (379)
T ss_dssp             -----------------------------------------------------CTT----CEEEEEETTSCEEEEEEETT
T ss_pred             -----cC---------------------------------------------CCCC----CEEEEEeCCCeEEEEEecCC
Confidence                 00                                             0000    01234567999999999876


Q ss_pred             c----EEEEeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-eccccc
Q 004255          360 A----IISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-HRGITS  431 (765)
Q Consensus       360 ~----~i~~~~aH~~~IsaLaFSpd---G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l-~rG~~~  431 (765)
                      +    .+..+.+|..+|.+++|+|+   |.+||+++.||. |+|||+....     .          .....+ ....+.
T Consensus       193 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~~~-----~----------~~~~~~~~~~~~~  256 (379)
T 3jrp_A          193 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----G----------PWKKTLLKEEKFP  256 (379)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTT-----S----------CCEEEESSSSCCS
T ss_pred             CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCCCC-----c----------cceeeeeccccCC
Confidence            4    55678899999999999999   999999999775 9999986510     0          111222 222234


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       432 a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ..|++++|+|||++|++++.||+|+||++...
T Consensus       257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          257 DVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             SCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            57999999999999999999999999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.90  E-value=7.2e-22  Score=208.46  Aligned_cols=292  Identities=15%  Similarity=0.125  Sum_probs=194.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcce-EeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFN-ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~-ells~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ...+++.|..+.|..    +...++.|++|..+| ++|||++..+... ..+..|.++|..+++.|+             
T Consensus        35 ~~~h~~~v~~~~~~~----~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------------   97 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSP----PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD-------------   97 (368)
T ss_dssp             SSCCSSCEEEEEECC----TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT-------------
T ss_pred             ccCCCCceEEEEEcC----CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC-------------
Confidence            456889999999976    211257888888876 9999997634443 788899999999999974             


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEe--cC--CeE
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRC--SP--RIV  205 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~--s~--~~L  205 (765)
                      ..+|++.+.                                 +++|++||+.+++.+....+...|.++++  ++  ++|
T Consensus        98 ~~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  144 (368)
T 3mmy_A           98 GSKVFTASC---------------------------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV  144 (368)
T ss_dssp             SSEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEE
T ss_pred             CCEEEEEcC---------------------------------CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEE
Confidence            236665321                                 36899999999999998888899999999  65  456


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (765)
Q Consensus       206 aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~  284 (765)
                      +++. ++.|++||+.+++.+.++..+..              ...+.+.+..++.+..+..     ...|+.....    
T Consensus       145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~----  201 (368)
T 3mmy_A          145 MTGSWDKTLKFWDTRSSNPMMVLQLPER--------------CYCADVIYPMAVVATAERG-----LIVYQLENQP----  201 (368)
T ss_dssp             EEEETTSEEEEECSSCSSCSEEEECSSC--------------EEEEEEETTEEEEEEGGGC-----EEEEECSSSC----
T ss_pred             EEccCCCcEEEEECCCCcEEEEEecCCC--------------ceEEEecCCeeEEEeCCCc-----EEEEEecccc----
Confidence            6654 66899999999998888875432              1123333333333322210     0111111100    


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC---cE
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AI  361 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~---~~  361 (765)
                             ... .       .+......  ...+         ............  .++.+..+|.|+|||+...   ..
T Consensus       202 -------~~~-~-------~~~~~~~~--~~~~---------~~~~~~~~~~~~--~~~~~~~dg~i~i~~~~~~~~~~~  253 (368)
T 3mmy_A          202 -------SEF-R-------RIESPLKH--QHRC---------VAIFKDKQNKPT--GFALGSIEGRVAIHYINPPNPAKD  253 (368)
T ss_dssp             -------EEE-E-------ECCCSCSS--CEEE---------EEEEECTTSCEE--EEEEEETTSEEEEEESSCSCHHHH
T ss_pred             -------chh-h-------hccccccC--CCce---------EEEcccCCCCCC--eEEEecCCCcEEEEecCCCCcccc
Confidence                   000 0       00000000  0000         000000001111  1456778999999999987   56


Q ss_pred             EEEeccCCC------------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 004255          362 ISQFKAHTS------------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (765)
Q Consensus       362 i~~~~aH~~------------~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~  429 (765)
                      +..+.+|..            +|.+++|+|+|++||+++.||. |+|||+..       +          ..+..+. + 
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~-------~----------~~~~~~~-~-  313 (368)
T 3mmy_A          254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDA-------R----------TKLKTSE-Q-  313 (368)
T ss_dssp             SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEEEECC-C-
T ss_pred             ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCC-------C----------cEEEEec-C-
Confidence            778888876            7999999999999999999776 99999965       3          4566654 3 


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          430 TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       430 ~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      +...|++++|+|||++||+++.|+..+.|++-...
T Consensus       314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          314 LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred             CCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence            34579999999999999999999977777665433

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5e-21  Score=202.09  Aligned_cols=263  Identities=11%  Similarity=0.065  Sum_probs=188.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..++++.|..+.|..       .++.|++|..+| ++|||+. .++....+..|.++|..+++.|+             .
T Consensus        28 l~~h~~~v~~~~~s~-------~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~-------------~   86 (369)
T 3zwl_B           28 LTGHERPLTQVKYNK-------EGDLLFSCSKDSSASVWYSL-NGERLGTLDGHTGTIWSIDVDCF-------------T   86 (369)
T ss_dssp             EECCSSCEEEEEECT-------TSCEEEEEESSSCEEEEETT-TCCEEEEECCCSSCEEEEEECTT-------------S
T ss_pred             EEEeeceEEEEEEcC-------CCCEEEEEeCCCEEEEEeCC-CchhhhhhhhcCCcEEEEEEcCC-------------C
Confidence            456888899999865       256788887776 9999995 57788888899999999999874             2


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG  208 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~  208 (765)
                      .+|++.+.                                 +++|++||+.+++.+..+.+...|.++++++  ++|+++
T Consensus        87 ~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  133 (369)
T 3zwl_B           87 KYCVTGSA---------------------------------DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAI  133 (369)
T ss_dssp             SEEEEEET---------------------------------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEe
Confidence            36655321                                 3689999999999999999889999999998  677766


Q ss_pred             eC------CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCC
Q 004255          209 LA------TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (765)
Q Consensus       209 ~~------~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~  282 (765)
                      ..      +.|++||+.+.+....+.......              ...+    ....+...                  
T Consensus       134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~--------------~~~~----~~~~~~~~------------------  177 (369)
T 3zwl_B          134 LDNVMKNPGSINIYEIERDSATHELTKVSEEP--------------IHKI----ITHEGLDA------------------  177 (369)
T ss_dssp             ECCBTTBCCEEEEEEEEECTTTCCEEEECSSC--------------SEEE----ECCTTCCC------------------
T ss_pred             cCCccCCCCEEEEEEecCCccceeecccccce--------------eeec----cCCcCccc------------------
Confidence            54      589999987765443333211100              0000    00000000                  


Q ss_pred             CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcE
Q 004255          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAI  361 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s-~~~  361 (765)
                                 +.                                ...++++++    .++.+..+|.|++||+.+ ++.
T Consensus       178 -----------~~--------------------------------~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~  210 (369)
T 3zwl_B          178 -----------AT--------------------------------VAGWSTKGK----YIIAGHKDGKISKYDVSNNYEY  210 (369)
T ss_dssp             -----------EE--------------------------------EEEECGGGC----EEEEEETTSEEEEEETTTTTEE
T ss_pred             -----------ee--------------------------------EEEEcCCCC----EEEEEcCCCEEEEEECCCCcEe
Confidence                       00                                000011111    123456789999999999 788


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (765)
Q Consensus       362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (765)
                      +..+..|..+|.+++|+|+|++|++++.|| .|+|||+..       +          ..+..+.   ....+.+++|+|
T Consensus       211 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~-------~----------~~~~~~~---~~~~~~~~~~~~  269 (369)
T 3zwl_B          211 VDSIDLHEKSISDMQFSPDLTYFITSSRDT-NSFLVDVST-------L----------QVLKKYE---TDCPLNTAVITP  269 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE---CSSCEEEEEECS
T ss_pred             EEEEecCCCceeEEEECCCCCEEEEecCCc-eEEEEECCC-------C----------ceeeeec---CCCCceeEEecC
Confidence            999999999999999999999999999966 599999965       2          3555554   335699999999


Q ss_pred             CCCEEEEEeCCC--------------cEEEEeCCCCCCCcccccc
Q 004255          442 YSQWIAIVSSKG--------------TCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       442 Dg~~Las~S~dg--------------TVhIwdl~~~gg~~~~~~h  472 (765)
                      ++++|++++.++              ++++||+........+..|
T Consensus       270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  314 (369)
T 3zwl_B          270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH  314 (369)
T ss_dssp             SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred             CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence            999999999999              7888888765544444455

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.90  E-value=8.5e-22  Score=212.12  Aligned_cols=293  Identities=12%  Similarity=0.074  Sum_probs=196.7

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL  133 (765)
                      +++.|..+.|..       .++.|++|..+| ++|||.  .++....+..|.++|..+++.|+             ..+|
T Consensus       107 ~~~~v~~~~~s~-------~~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~-------------~~~l  164 (425)
T 1r5m_A          107 TTNQVTCLAWSH-------DGNSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKD-------------GTHI  164 (425)
T ss_dssp             -CBCEEEEEECT-------TSSEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTT-------------SSEE
T ss_pred             CCCceEEEEEcC-------CCCEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCC-------------CCEE
Confidence            455788877755       356888888776 999994  56677888889999999999874             2366


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-C---------------EEE
Q 004255          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-S---------------VCM  197 (765)
Q Consensus       134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-~---------------V~s  197 (765)
                      ++++.                                 +++|++||+.+++.+..+..+. .               |.+
T Consensus       165 ~~~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (425)
T 1r5m_A          165 ISMDV---------------------------------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD  211 (425)
T ss_dssp             EEEET---------------------------------TCCEEEEETTTTEEEEEECCC---------------CCCBSC
T ss_pred             EEEec---------------------------------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE
Confidence            55321                                 2589999999999999998654 3               778


Q ss_pred             EEecC-CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCcccc
Q 004255          198 VRCSP-RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLS  273 (765)
Q Consensus       198 V~~s~-~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s  273 (765)
                      +.+++ ..++++ .++.|++||+.+++.+..+..|..+             ...++++|  ++|++++.+..+     ..
T Consensus       212 ~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~d~~i-----~i  273 (425)
T 1r5m_A          212 VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP-------------ISVLEFNDTNKLLLSASDDGTL-----RI  273 (425)
T ss_dssp             CEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC-------------EEEEEEETTTTEEEEEETTSCE-----EE
T ss_pred             EEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc-------------eEEEEECCCCCEEEEEcCCCEE-----EE
Confidence            88776 445554 4568999999999888887766542             35678887  788887754211     12


Q ss_pred             CCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEE
Q 004255          274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVV  353 (765)
Q Consensus       274 ~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~I  353 (765)
                      |+..+..            .+                +++..+.      .....+.+++++     .++.+..+|.|+|
T Consensus       274 ~d~~~~~------------~~----------------~~~~~~~------~~i~~~~~~~~~-----~l~~~~~d~~i~i  314 (425)
T 1r5m_A          274 WHGGNGN------------SQ----------------NCFYGHS------QSIVSASWVGDD-----KVISCSMDGSVRL  314 (425)
T ss_dssp             ECSSSBS------------CS----------------EEECCCS------SCEEEEEEETTT-----EEEEEETTSEEEE
T ss_pred             EECCCCc------------cc----------------eEecCCC------ccEEEEEECCCC-----EEEEEeCCCcEEE
Confidence            2221110            00                0111100      001111112211     2345678999999


Q ss_pred             EECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc--CCCCCCccccCC-cceEEEEEecccc
Q 004255          354 KDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--SGSGNHKYDWNS-SHVHLYKLHRGIT  430 (765)
Q Consensus       354 wDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~--~~sG~~~~~~~~-s~~~l~~l~rG~~  430 (765)
                      ||+.+++.+..+..|..+|.+++|+|+|++||+++.+|. |+|||+......  ...+.....+.. ....+..+. ++.
T Consensus       315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  392 (425)
T 1r5m_A          315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQ  392 (425)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEEC-CTT
T ss_pred             EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhhc-Ccc
Confidence            999999999999999999999999999999999999775 999998642100  000000000000 001445554 433


Q ss_pred             cc-cEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          431 SA-TIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       431 ~a-~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      .. .|.+++|+||+++|++++.||+|+||+++
T Consensus       393 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          393 DNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             cCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            33 79999999999999999999999999985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.90  E-value=3.1e-21  Score=200.48  Aligned_cols=273  Identities=12%  Similarity=0.130  Sum_probs=179.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC---cceEeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g---~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      ..+|++.|..+.|..       .++.|++|..+| ++|||+....   .+...+..|.++|.++++.|..          
T Consensus         7 ~~gH~~~v~~~~~~~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------   69 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDF-------YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE----------   69 (351)
T ss_dssp             ECCCSSCEEEEEECS-------SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG----------
T ss_pred             CcccccceeEEEEcC-------CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC----------
Confidence            356889999999976       256788888777 9999996433   2455667889999999998720          


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC---------eEEEEEeC-CCCEEE
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---------CYEHVLRF-RSSVCM  197 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg---------~~v~tL~~-~s~V~s  197 (765)
                       ...+|++.+.                                 +++|++||+.++         +.+..+.. ...|.+
T Consensus        70 -d~~~l~s~~~---------------------------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  115 (351)
T 3f3f_A           70 -YGRIIASASY---------------------------------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS  115 (351)
T ss_dssp             -GCSEEEEEET---------------------------------TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEE
T ss_pred             -CCCEEEEEcC---------------------------------CCeEEEEecCCCcccccccCcceeeeecccCCceeE
Confidence             1236665321                                 368999999987         56777764 468999


Q ss_pred             EEecCC----eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-------ceEEEecCCce
Q 004255          198 VRCSPR----IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-------RWLAYASNTLL  265 (765)
Q Consensus       198 V~~s~~----~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp-------r~LAyas~~~~  265 (765)
                      +++++.    +|+++. ++.|++||+.+++.+..+......              ..+.+.+       ..+++.     
T Consensus       116 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-----  176 (351)
T 3f3f_A          116 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM--------------KVLSIPPANHLQSDFCLSWC-----  176 (351)
T ss_dssp             EEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--------------ESCSCCCSSCSCCCEEEEEC-----
T ss_pred             EEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--------------cccccccCCcccceeEEEec-----
Confidence            999863    666654 568999999988754433210000              0000000       000000     


Q ss_pred             ecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCcccccccccccc
Q 004255          266 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADM  345 (765)
Q Consensus       266 ~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~  345 (765)
                                                                              |+.            .....++.+
T Consensus       177 --------------------------------------------------------p~~------------~~~~~l~~~  188 (351)
T 3f3f_A          177 --------------------------------------------------------PSR------------FSPEKLAVS  188 (351)
T ss_dssp             --------------------------------------------------------CCS------------SSCCEEEEE
T ss_pred             --------------------------------------------------------cCC------------CCCcEEEEe
Confidence                                                                    000            000012345


Q ss_pred             CCCCeEEEEECCCCcE--EEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccCC------------
Q 004255          346 DNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSG------------  407 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~--i~~~~aH~~~IsaLaFSpdG----~lLATaS~dGt~IrVWdi~~~~~~~~------------  407 (765)
                      ..+|.+.+|+...++.  +..+.+|..+|.+++|+|+|    ++|++++.||. |+|||+........            
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~  267 (351)
T 3f3f_A          189 ALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFD  267 (351)
T ss_dssp             ETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC----------------
T ss_pred             cCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccC
Confidence            6788888888887765  77889999999999999998    89999999775 99999864210000            


Q ss_pred             ---------CCC-------CccccC-CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          408 ---------SGN-------HKYDWN-SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       408 ---------sG~-------~~~~~~-~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                               .+.       ....+. .....+..+. + +...|++++|+||+++|++++.||+|+||+++..+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          268 NSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-D-HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             -----------------------CCSEEEEEEEEEC-T-TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             CCcccccccccccccccceeeeecccccccEEEEEe-c-ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence                     000       000000 0113344443 4 345799999999999999999999999999987543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.90  E-value=6.5e-21  Score=204.32  Aligned_cols=259  Identities=19%  Similarity=0.177  Sum_probs=174.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC------CcceEeeeeccCCEEEEEEecCCCCCCCCC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA------SNFNELVSKRDGPVSFLQMQPFPVKDDGCE  124 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~------g~~~ells~~dg~V~~v~~lP~p~~~~~~d  124 (765)
                      ..+|++.|..+.|...... ..++++|++|..++ ++|||+...      +.....+..|.++|..+++.|+        
T Consensus        17 l~gH~~~V~~~~~~~s~~~-~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~--------   87 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKE-NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE--------   87 (343)
T ss_dssp             EECCSSCEEEEEECCCSST-TCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS--------
T ss_pred             eccchhhhhheeeEEEeec-CCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC--------
Confidence            4678899999988431111 11367888888876 999999642      2345678889999999999874        


Q ss_pred             CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC-
Q 004255          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-  202 (765)
Q Consensus       125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~-  202 (765)
                           ..+|+..+                                 .+++|+|||+++++.+.++..+ ..|.+|++++ 
T Consensus        88 -----~~~l~s~s---------------------------------~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~  129 (343)
T 2xzm_R           88 -----NCFAISSS---------------------------------WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD  129 (343)
T ss_dssp             -----TTEEEEEE---------------------------------TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS
T ss_pred             -----CCEEEEEc---------------------------------CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC
Confidence                 23665422                                 1369999999999999999854 6999999997 


Q ss_pred             -CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCC
Q 004255          203 -RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (765)
Q Consensus       203 -~~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~  280 (765)
                       ++|+++ .++.|++||+.. +....+......          ......+++       .....       . ...    
T Consensus       130 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~----------~~~v~~~~~-------~~~~~-------~-~~~----  179 (343)
T 2xzm_R          130 NRQILSAGAEREIKLWNILG-ECKFSSAEKENH----------SDWVSCVRY-------SPIMK-------S-ANK----  179 (343)
T ss_dssp             TTEEEEEETTSCEEEEESSS-CEEEECCTTTSC----------SSCEEEEEE-------CCCCC-------S-CSC----
T ss_pred             CCEEEEEcCCCEEEEEeccC-CceeeeecccCC----------Cceeeeeee-------ccccc-------c-ccc----
Confidence             566665 466899999873 333322210000          000122232       22110       0 000    


Q ss_pred             CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (765)
Q Consensus       281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~  360 (765)
                                                             +.|               ....++.++.||.|+||| ...+
T Consensus       180 ---------------------------------------~~~---------------~~~~l~s~~~d~~i~iwd-~~~~  204 (343)
T 2xzm_R          180 ---------------------------------------VQP---------------FAPYFASVGWDGRLKVWN-TNFQ  204 (343)
T ss_dssp             ---------------------------------------CCS---------------SCCEEEEEETTSEEEEEE-TTTE
T ss_pred             ---------------------------------------cCC---------------CCCEEEEEcCCCEEEEEc-CCCc
Confidence                                                   000               000123567899999999 4567


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 004255          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS  440 (765)
Q Consensus       361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS  440 (765)
                      ....+.+|..+|.+++|+|+|++|||++.|| .|+|||+...      +          .....+..+   ..|.+++|+
T Consensus       205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg-~v~iwd~~~~------~----------~~~~~~~~~---~~v~~v~~s  264 (343)
T 2xzm_R          205 IRYTFKAHESNVNHLSISPNGKYIATGGKDK-KLLIWDILNL------T----------YPQREFDAG---STINQIAFN  264 (343)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTC-EEEEEESSCC------S----------SCSEEEECS---SCEEEEEEC
T ss_pred             eeEEEcCccccceEEEECCCCCEEEEEcCCC-eEEEEECCCC------c----------ccceeecCC---CcEEEEEEC
Confidence            7888999999999999999999999999966 5999998431      1          122233222   359999999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCC
Q 004255          441 HYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       441 pDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ||+++|+++ .|++|+||++...
T Consensus       265 p~~~~la~~-~d~~v~iw~~~~~  286 (343)
T 2xzm_R          265 PKLQWVAVG-TDQGVKIFNLMTQ  286 (343)
T ss_dssp             SSSCEEEEE-ESSCEEEEESSSC
T ss_pred             CCCCEEEEE-CCCCEEEEEeCCC
Confidence            999998765 5778999999764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.90  E-value=6.9e-21  Score=198.82  Aligned_cols=275  Identities=13%  Similarity=0.053  Sum_probs=187.3

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcce--Eeee--eccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFN--ELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~--ells--~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      .+.+.|..+.|..       .++.|++|.++.++|||++......  ..+.  .|.++|..+++.|+             
T Consensus        49 ~h~~~v~~~~~~~-------~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------  108 (337)
T 1gxr_A           49 NHGEVVCAVTISN-------PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-------------  108 (337)
T ss_dssp             CCSSCCCEEEECS-------SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-------------
T ss_pred             cCCCceEEEEEec-------CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC-------------
Confidence            3556666666643       3678888886569999996543222  2222  67889999999974             


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCCEEEEEecC--Ce
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP--RI  204 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~-~s~V~sV~~s~--~~  204 (765)
                      ..+|++.+.                                 +++|++||+++++  .+..+.. ...|.++++++  ++
T Consensus       109 ~~~l~~~~~---------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  155 (337)
T 1gxr_A          109 GCTLIVGGE---------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV  155 (337)
T ss_dssp             SSEEEEEES---------------------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE
T ss_pred             CCEEEEEcC---------------------------------CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCE
Confidence            236655221                                 3689999999987  5555554 45899999987  57


Q ss_pred             EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCC
Q 004255          205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       205 LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                      |+++. ++.|++||+.+++.+..+..|..+             ...++++|  ++|+.++.+..+     ..|+..+.  
T Consensus       156 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~dg~i-----~~~d~~~~--  215 (337)
T 1gxr_A          156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASCIDISNDGTKLWTGGLDNTV-----RSWDLREG--  215 (337)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEE-----EEEETTTT--
T ss_pred             EEEEeCCCcEEEEeCCCCceeeeeecccCc-------------eEEEEECCCCCEEEEEecCCcE-----EEEECCCC--
Confidence            77765 567999999999888887765542             35678877  688887655211     12221110  


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~  361 (765)
                                ..+.                .+.       .........++++++    .++.+..+|.|++||+.+++.
T Consensus       216 ----------~~~~----------------~~~-------~~~~v~~~~~s~~~~----~l~~~~~~~~i~~~~~~~~~~  258 (337)
T 1gxr_A          216 ----------RQLQ----------------QHD-------FTSQIFSLGYCPTGE----WLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             ----------EEEE----------------EEE-------CSSCEEEEEECTTSS----EEEEEETTSCEEEEETTSSCE
T ss_pred             ----------ceEe----------------eec-------CCCceEEEEECCCCC----EEEEEcCCCcEEEEECCCCCe
Confidence                      0000                000       000011112222222    234566789999999998875


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (765)
Q Consensus       362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (765)
                       ..+..|..+|.+++|+|+|++|++++.|| .|++||+..       +          ..+..+.   +...|.+++|+|
T Consensus       259 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~~~~~~-------~----------~~~~~~~---~~~~v~~~~~s~  316 (337)
T 1gxr_A          259 -YQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWRTPY-------G----------ASIFQSK---ESSSVLSCDISV  316 (337)
T ss_dssp             -EEECCCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE---CSSCEEEEEECT
T ss_pred             -EEEcCCccceeEEEECCCCCEEEEecCCC-cEEEEECCC-------C----------eEEEEec---CCCcEEEEEECC
Confidence             46789999999999999999999999966 599999865       2          2443332   345799999999


Q ss_pred             CCCEEEEEeCCCcEEEEeC
Q 004255          442 YSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       442 Dg~~Las~S~dgTVhIwdl  460 (765)
                      |+++|++++.||+|+||++
T Consensus       317 ~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          317 DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEecCCCeEEEEEE
Confidence            9999999999999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.2e-21  Score=205.21  Aligned_cols=247  Identities=12%  Similarity=0.116  Sum_probs=168.5

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEee-ee-ccCCEEEEEEecCCCCCCCCCCcc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELV-SK-RDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g-~~~ell-s~-~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      ..++++.|..+.|+.        . +|++|..+| ++|||+.... .+..++ .. |.++|..|++.|+           
T Consensus        10 ~~~h~~~v~~~~~s~--------~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-----------   69 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQ--------G-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-----------   69 (330)
T ss_dssp             EECCSSCEEEEEEET--------T-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-----------
T ss_pred             eccCCCceeeeccCC--------C-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-----------
Confidence            346788888888864        1 788888776 9999995421 334445 33 8899999999974           


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-------CCeEEEEEeCC-CCEEEEE
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-------SHCYEHVLRFR-SSVCMVR  199 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk-------tg~~v~tL~~~-s~V~sV~  199 (765)
                        ..+||+.+.                                 +++|+|||+.       +.+++..+..+ ..|.+|+
T Consensus        70 --~~~las~s~---------------------------------D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  114 (330)
T 2hes_X           70 --TSLLAAGSF---------------------------------DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA  114 (330)
T ss_dssp             --SSEEEEEET---------------------------------TSCEEEEEC-------CCCEEEEEEC----CEEEEE
T ss_pred             --CCEEEEEeC---------------------------------CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEE
Confidence              236765332                                 3689999985       34567777654 6899999


Q ss_pred             ecC--CeEEEEe-CCeEEEEECCCC----ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccc
Q 004255          200 CSP--RIVAVGL-ATQIYCFDALTL----ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL  272 (765)
Q Consensus       200 ~s~--~~LaV~~-~~~I~iwD~~t~----~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~  272 (765)
                      +++  ++||++. ++.|++||+.+.    +++.++..|..+             ...++++|       +.         
T Consensus       115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~---------  165 (330)
T 2hes_X          115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD-------------VKHVIWHP-------SE---------  165 (330)
T ss_dssp             ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC-------------EEEEEECS-------SS---------
T ss_pred             ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc-------------eEEEEECC-------CC---------
Confidence            987  6777765 568999999432    344445444431             12333332       10         


Q ss_pred             cCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEE
Q 004255          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (765)
Q Consensus       273 s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~  352 (765)
                                        .                                                 .+++++.||+|+
T Consensus       166 ------------------~-------------------------------------------------~l~s~s~D~~i~  178 (330)
T 2hes_X          166 ------------------A-------------------------------------------------LLASSSYDDTVR  178 (330)
T ss_dssp             ------------------S-------------------------------------------------EEEEEETTSCEE
T ss_pred             ------------------C-------------------------------------------------EEEEEcCCCeEE
Confidence                              0                                                 012345689999


Q ss_pred             EEECCCC--cEEEEeccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          353 VKDFVTR--AIISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       353 IwDl~s~--~~i~~~~aH~~~IsaLaFSpd--G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      |||+.++  +++..+.+|..+|.+++|+|+  +.+|+|++.|++ |+|||+.....   .+      ......+..+ .+
T Consensus       179 iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~---~~------~~~~~~~~~~-~~  247 (330)
T 2hes_X          179 IWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDE---DD------QQEWVCEAIL-PD  247 (330)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECT---TS------CEEEEEEEEC-CS
T ss_pred             EEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCc---cc------cceeEEeeec-cc
Confidence            9998876  678899999999999999999  789999999765 99999853100   00      0000122223 23


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      .+...|++++|++++ +|++++.||+|+||++.
T Consensus       248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV  279 (330)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred             ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence            345679999999765 89999999999999975

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.90  E-value=1.4e-20  Score=197.43  Aligned_cols=240  Identities=12%  Similarity=0.113  Sum_probs=177.1

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      ..++..|..+.|..       .++.|++|..+| ++|||+. .+++...+..|.+.|.++.+.|+.             .
T Consensus        62 ~~h~~~v~~~~~~~-------~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-------------~  120 (312)
T 4ery_A           62 SGHKLGISDVAWSS-------DSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQS-------------N  120 (312)
T ss_dssp             CCCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECSSS-------------S
T ss_pred             ccCCCceEEEEEcC-------CCCEEEEECCCCEEEEEECC-CCcEEEEEcCCCCCEEEEEEcCCC-------------C
Confidence            45667777777754       356788888776 9999995 567778888999999999998742             3


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG  208 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~  208 (765)
                      +|++.+.                                 +++|++||+++++.+..+..+ .+|.++.+++  ++|+++
T Consensus       121 ~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A          121 LIVSGSF---------------------------------DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             EEEEEET---------------------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEeC---------------------------------CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            6654221                                 368999999999999999865 6899999987  567765


Q ss_pred             e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255          209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (765)
Q Consensus       209 ~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s  287 (765)
                      . ++.|++||+.+++.+..+.....+            ....++++|       +.                        
T Consensus       168 ~~d~~i~~wd~~~~~~~~~~~~~~~~------------~~~~~~~~~-------~~------------------------  204 (312)
T 4ery_A          168 SYDGLCRIWDTASGQCLKTLIDDDNP------------PVSFVKFSP-------NG------------------------  204 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCSSCC------------CEEEEEECT-------TS------------------------
T ss_pred             eCCCcEEEEECCCCceeeEEeccCCC------------ceEEEEECC-------CC------------------------
Confidence            5 568999999999877766432221            012233322       11                        


Q ss_pred             CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA  367 (765)
Q Consensus       288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a  367 (765)
                         .                                                 .++.+..||.|+|||+.+++.+..+.+
T Consensus       205 ---~-------------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~  232 (312)
T 4ery_A          205 ---K-------------------------------------------------YILAATLDNTLKLWDYSKGKCLKTYTG  232 (312)
T ss_dssp             ---S-------------------------------------------------EEEEEETTTEEEEEETTTTEEEEEECS
T ss_pred             ---C-------------------------------------------------EEEEEcCCCeEEEEECCCCcEEEEEEe
Confidence               0                                                 011234688999999999999999999


Q ss_pred             CCCCeE---EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 004255          368 HTSPIS---ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (765)
Q Consensus       368 H~~~Is---aLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (765)
                      |...+.   .....++|.+|++++.||. |+|||+..       +          ..+.++. |+ ...|.+++|+|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~~~-~h-~~~v~~~~~~p~~~  292 (312)
T 4ery_A          233 HKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQT-------K----------EIVQKLQ-GH-TDVVISTACHPTEN  292 (312)
T ss_dssp             SCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTT-------C----------CEEEEEC-CC-SSCEEEEEECSSSS
T ss_pred             cCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCC-------c----------hhhhhhh-cc-CCcEEEEeecCcCC
Confidence            977543   3334478999999999775 99999965       2          3555664 43 45799999999999


Q ss_pred             EEEEEe--CCCcEEEEeCC
Q 004255          445 WIAIVS--SKGTCHVFVLS  461 (765)
Q Consensus       445 ~Las~S--~dgTVhIwdl~  461 (765)
                      +|++++  .|++|+||+.+
T Consensus       293 ~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          293 IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEEEECTTTCCEEEEECC
T ss_pred             ceEEEEccCCccEEEecCC
Confidence            999997  69999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.7e-21  Score=206.69  Aligned_cols=244  Identities=11%  Similarity=0.081  Sum_probs=163.1

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC------CcceEeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA------SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~------g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      +++.|..+.|..       .+++|++|..++ ++|||++..      .++...+..|.++|..|++.|+.          
T Consensus        57 h~~~v~~v~~sp-------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g----------  119 (330)
T 2hes_X           57 HKKAIRSVAWRP-------HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG----------  119 (330)
T ss_dssp             CCSCEEEEEECT-------TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS----------
T ss_pred             ccCCEEEEEECC-------CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC----------
Confidence            777888888865       256888888776 999998531      23456778899999999999752          


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC----CeEEEEEeCC-CCEEEEEecC
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS----HCYEHVLRFR-SSVCMVRCSP  202 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt----g~~v~tL~~~-s~V~sV~~s~  202 (765)
                         .+||..+.                                 +++|++||+..    .+++..+..+ ..|.+|+++|
T Consensus       120 ---~~las~s~---------------------------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p  163 (330)
T 2hes_X          120 ---YYLATCSR---------------------------------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP  163 (330)
T ss_dssp             ---CEEEEEET---------------------------------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred             ---CEEEEEeC---------------------------------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence               36665321                                 36899999943    3567778754 6899999987


Q ss_pred             --CeEEEEe-CCeEEEEECCCC--ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCC
Q 004255          203 --RIVAVGL-ATQIYCFDALTL--ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL  277 (765)
Q Consensus       203 --~~LaV~~-~~~I~iwD~~t~--~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~l  277 (765)
                        ++|+++. ++.|++||+.+.  +++.++.+|..+             ...++|+|       +..             
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~~-------------  210 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT-------------VWSSDFDK-------TEG-------------  210 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEEEEECC-------SSS-------------
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc-------------EEEEEecC-------CCC-------------
Confidence              5777765 568999998766  455666555542             12233322       100             


Q ss_pred             CCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 004255          278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV  357 (765)
Q Consensus       278 t~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~  357 (765)
                                   +                                                ..+++++.||+|+|||+.
T Consensus       211 -------------~------------------------------------------------~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          211 -------------V------------------------------------------------FRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             -------------S------------------------------------------------CEEEEEETTSCEEEEEEE
T ss_pred             -------------e------------------------------------------------eEEEEEeCCCeEEEEEec
Confidence                         0                                                001244578999999987


Q ss_pred             CC--------cEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          358 TR--------AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       358 s~--------~~i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      ++        ..+..+.. |..+|.+++|++++ +||+++.||+ |+|||+..       +.        ...+.....+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~-------~~--------~~~~~~~~~~  292 (330)
T 2hes_X          230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVD-------GE--------WKVFAKRALC  292 (330)
T ss_dssp             EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEET-------TE--------EEEEEEESCT
T ss_pred             CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCC-------Cc--------eEEEeccccc
Confidence            64        45556665 99999999999776 8999999775 99999853       20        0122233234


Q ss_pred             cccccEEEEEEcc--CCCEEEEEeCCCcEEEEeCCC
Q 004255          429 ITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       429 ~~~a~I~slaFSp--Dg~~Las~S~dgTVhIwdl~~  462 (765)
                      +....|.+++|+|  |+++||+++.||+|+||+++.
T Consensus       293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            4333799999999  799999999999999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=1.9e-20  Score=194.62  Aligned_cols=270  Identities=14%  Similarity=0.132  Sum_probs=183.0

Q ss_pred             eEEEEEecCcEEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           76 QVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        76 ~vL~~G~~~G~qVWdv~~~g~~~ells--~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      ++|++|.++.++|||++ ++++.+++.  .|.+.|.+|++.|+             ..+||+.+                
T Consensus        37 ~~lAvg~D~tV~iWd~~-tg~~~~~~~~~~~~~~V~~v~~~~~-------------~~~l~sgs----------------   86 (318)
T 4ggc_A           37 NVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKE-------------GNYLAVGT----------------   86 (318)
T ss_dssp             SEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTT-------------SSEEEEEE----------------
T ss_pred             CEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCeEEEEEECCC-------------CCEEEEEE----------------
Confidence            48999998889999995 677888776  45678999999974             23666522                


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEeC-CeEEEEECCCCc-eeEEEEec
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-TQIYCFDALTLE-NKFSVLTY  230 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~~-~~I~iwD~~t~~-~l~tl~t~  230 (765)
                                       .+++|++||++++++++++..+ ..+.++..++++|+++.. +.+++|+..+.. .+.++..|
T Consensus        87 -----------------~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~  149 (318)
T 4ggc_A           87 -----------------SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH  149 (318)
T ss_dssp             -----------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             -----------------CCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCc
Confidence                             1369999999999999999876 578889999999988765 469999987754 34455555


Q ss_pred             CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255          231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (765)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G  308 (765)
                      ...             ...+++.+  ++|++++.+..+     ..|+..+.......        .              
T Consensus       150 ~~~-------------~~~~~~~~~~~~l~s~~~d~~i-----~iwd~~~~~~~~~~--------~--------------  189 (318)
T 4ggc_A          150 SQE-------------VCGLRWAPDGRHLASGGNDNLV-----NVWPSAPGEGGWVP--------L--------------  189 (318)
T ss_dssp             SSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEESSCBTTBSCC--------S--------------
T ss_pred             cCc-------------eEEEEEcCCCCEEEEEecCcce-----eEEECCCCcccccc--------e--------------
Confidence            542             23455655  778887665311     12332221000000        0              


Q ss_pred             cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 004255          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS  388 (765)
Q Consensus       309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS  388 (765)
                        .....+      .+........+... .....+.+..+++|+|||.......... .|...+..++|+|++..+++++
T Consensus       190 --~~~~~~------~~~v~~~~~~~~~~-~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s  259 (318)
T 4ggc_A          190 --QTFTQH------QGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGH  259 (318)
T ss_dssp             --EEECCC------CSCEEEEEECTTST-TEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEE
T ss_pred             --eeeccc------CCceEEEEecCCCC-cEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEE
Confidence              000000      00000000111100 1112235678899999999988776554 5667899999999999998876


Q ss_pred             --cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          389 --VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       389 --~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                        .|+ .|+|||+..       +          .++.+|. |+ ...|++|+|||||++||++|.||+|+|||+..
T Consensus       260 g~~d~-~i~iwd~~~-------~----------~~~~~l~-gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          260 GFAQN-QLVIWKYPT-------M----------AKVAELK-GH-TSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             CTTTC-CEEEEETTT-------C----------CEEEEEC-CC-SSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EcCCC-EEEEEECCC-------C----------cEEEEEc-CC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence              444 599999965       3          4777775 54 46799999999999999999999999999965

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.89  E-value=6.2e-21  Score=205.16  Aligned_cols=250  Identities=14%  Similarity=0.117  Sum_probs=172.1

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g-~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      +++++.|..+.|..       .++.|++|..++ ++|||++... ++...+..|.++|..|++.|+             .
T Consensus        58 ~~h~~~v~~~~~sp-------~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~-------------~  117 (345)
T 3fm0_A           58 EGHQRTVRKVAWSP-------CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS-------------G  117 (345)
T ss_dssp             SSCSSCEEEEEECT-------TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT-------------S
T ss_pred             cccCCcEEEEEECC-------CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC-------------C
Confidence            56788888888865       356788888765 9999995422 345678889999999999975             2


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEEEEeC-CCCEEEEEecC--Ce
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVLRF-RSSVCMVRCSP--RI  204 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~---~v~tL~~-~s~V~sV~~s~--~~  204 (765)
                      .+|++.+.                                 +++|++||+.+++   ++..+.. ...|.++++++  ++
T Consensus       118 ~~l~s~s~---------------------------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A          118 NLLATCSR---------------------------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             SEEEEEET---------------------------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred             CEEEEEEC---------------------------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence            36665322                                 3689999998764   4556654 46899999987  57


Q ss_pred             EEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCC
Q 004255          205 VAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTP  279 (765)
Q Consensus       205 LaV~~-~~~I~iwD~~t~~--~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~  279 (765)
                      |+++. ++.|++||+.+.+  +..++..|..+             ...++|+|  ++||+++.                 
T Consensus       165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~-------------v~~l~~sp~g~~l~s~s~-----------------  214 (345)
T 3fm0_A          165 LASASYDDTVKLYREEEDDWVCCATLEGHEST-------------VWSLAFDPSGQRLASCSD-----------------  214 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEEEEECTTSSEEEEEET-----------------
T ss_pred             EEEEeCCCcEEEEEecCCCEEEEEEecCCCCc-------------eEEEEECCCCCEEEEEeC-----------------
Confidence            77765 5679999988765  33455555542             34566666  55555544                 


Q ss_pred             CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC--
Q 004255          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV--  357 (765)
Q Consensus       280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~--  357 (765)
                                                                                          ||+|+|||..  
T Consensus       215 --------------------------------------------------------------------D~~v~iW~~~~~  226 (345)
T 3fm0_A          215 --------------------------------------------------------------------DRTVRIWRQYLP  226 (345)
T ss_dssp             --------------------------------------------------------------------TSCEEEEEEECT
T ss_pred             --------------------------------------------------------------------CCeEEEeccccC
Confidence                                                                                3444444421  


Q ss_pred             -------------CCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          358 -------------TRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       358 -------------s~~~i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                                   ..+++..+.+ |...|.+++|+|++.+||+++.|+. |+||++.+...   ..      ........
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~---~~------~~~~~~~~  296 (345)
T 3fm0_A          227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSD---PQ------QPTFSLTA  296 (345)
T ss_dssp             TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSC---TT------SCCEEEEE
T ss_pred             CCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCC---cc------eeeEEEEe
Confidence                         1134555655 8999999999999999999999765 99999854210   00      00011122


Q ss_pred             EEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCC
Q 004255          424 KLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~g  464 (765)
                      .+..+ +...|.+|+|+|++ .+||++|.||+|+||++....
T Consensus       297 ~~~~~-h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          297 HLHQA-HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             EETTS-SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             eeccc-ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            23334 34579999999998 599999999999999997643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.89  E-value=4.4e-21  Score=217.67  Aligned_cols=315  Identities=17%  Similarity=0.161  Sum_probs=204.4

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL  133 (765)
                      +...|..+.|..       +++.|++|..+| ++|||.  .++..+.+..|.++|..+++.|+             ..+|
T Consensus       220 ~~~~v~~~~~s~-------dg~~l~~~~~d~~i~~w~~--~~~~~~~~~~~~~~v~~v~~~~d-------------~~~l  277 (577)
T 2ymu_A          220 HSSSVRGVAFSP-------DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPD-------------GQTI  277 (577)
T ss_dssp             CSSCEEEEEECT-------TSSCEEEEETTSCEEEECT--TSCEEEEECCCSSCEEEEEECTT-------------SSEE
T ss_pred             CCCCEEEEEECC-------CCCEEEEEeCCCEEEEEeC--CCCEEEEEecCCCCEEEEEEcCC-------------CCEE
Confidence            344455555532       355677777766 999997  35677888899999999999874             2356


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-
Q 004255          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-  209 (765)
Q Consensus       134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-  209 (765)
                      ++.+.                                 +++|++||. +++.+..+..+ ..|+++++++  ++|+++. 
T Consensus       278 ~~~~~---------------------------------d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~  323 (577)
T 2ymu_A          278 ASASD---------------------------------DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASD  323 (577)
T ss_dssp             EEEET---------------------------------TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeC---------------------------------CCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeC
Confidence            54321                                 358999996 56778888754 6899999987  5777665 


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCce--ecCC-ccc--cCCCCCCCCC
Q 004255          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLL--LSNS-GRL--SPQNLTPSGV  282 (765)
Q Consensus       210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~--~~~~-G~~--s~~~lt~~~~  282 (765)
                      ++.|++||+.+. .+..+..|..+             ...++++|  ++||.++.+..  ++.. +..  ..........
T Consensus       324 d~~i~~w~~~~~-~~~~~~~~~~~-------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~  389 (577)
T 2ymu_A          324 DKTVKLWNRNGQ-HLQTLTGHSSS-------------VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR  389 (577)
T ss_dssp             TSCEEEEETTSC-EEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE
T ss_pred             CCeEEEEeCCCC-eeEEEeCCCCC-------------EEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE
Confidence            557999997654 45556555442             34678888  78988876532  2211 111  0000111222


Q ss_pred             CCCcCCCCCcceeeehhhhh---hhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255          283 SPSTSPGGSSLVARYAMEHS---KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~---k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~  359 (765)
                      ...++|++..++.- ..+..   ++......+++.++.      .....+.++++.+.    ++.+..||.|+|||+ ++
T Consensus       390 ~~~~s~dg~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~------~~v~~~~~s~d~~~----l~~~~~d~~v~~w~~-~~  457 (577)
T 2ymu_A          390 GVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHS------SSVWGVAFSPDDQT----IASASDDKTVKLWNR-NG  457 (577)
T ss_dssp             EEEECTTSSCEEEE-ETTSEEEEECTTCCEEEEEECCS------SCEEEEEECTTSSE----EEEEETTSEEEEEET-TS
T ss_pred             EEEECCCCCEEEEE-eCCCEEEEEeCCCCEEEEecCCC------CCeEEEEECCCCCE----EEEEcCCCEEEEEEC-CC
Confidence            34455655444321 11111   011111112222221      11122334444332    456778999999996 56


Q ss_pred             cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 004255          360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF  439 (765)
Q Consensus       360 ~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF  439 (765)
                      +.+..+.+|..+|.+++|+|||++||+++.|+ .|+|||..        |          ..+..+. |+ ...|.+|+|
T Consensus       458 ~~~~~~~~~~~~v~~~~~spd~~~las~~~d~-~i~iw~~~--------~----------~~~~~~~-~h-~~~v~~l~~  516 (577)
T 2ymu_A          458 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRN--------G----------QLLQTLT-GH-SSSVRGVAF  516 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSCEEEEEETTS-EEEEEETT--------S----------CEEEEEE-CC-SSCEEEEEE
T ss_pred             CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-EEEEEcCC--------C----------CEEEEEe-CC-CCCEEEEEE
Confidence            78889999999999999999999999999965 59999962        3          3566664 43 457999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          440 SHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       440 SpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      ||||++||+++.||+|+|||+. ......+.+|.
T Consensus       517 s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~  549 (577)
T 2ymu_A          517 SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS  549 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECTT-SCEEEEEECCS
T ss_pred             cCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCC
Confidence            9999999999999999999963 22234456675

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=2.1e-20  Score=196.10  Aligned_cols=264  Identities=12%  Similarity=0.103  Sum_probs=176.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC----cceEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGF  126 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g----~~~ells~~dg~V~~v~~lP~p~~~~~~d~f  126 (765)
                      ..+|++.|..+.|..    +  .+++|++|..+| ++|||+....    .....+..|.++|..+.+.|+          
T Consensus        34 L~GH~~~V~~v~~sp----~--~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d----------   97 (340)
T 4aow_A           34 LKGHNGWVTQIATTP----Q--FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD----------   97 (340)
T ss_dssp             ECCCSSCEEEEEECT----T--CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT----------
T ss_pred             ECCccCCEEEEEEeC----C--CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC----------
Confidence            467999999999964    1  256888888776 9999996432    234567788999999999875          


Q ss_pred             cccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--C
Q 004255          127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R  203 (765)
Q Consensus       127 ~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~  203 (765)
                         ..+|++.+.                                 ++.|++|+...+......... ..+..+.+++  +
T Consensus        98 ---g~~l~s~~~---------------------------------d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (340)
T 4aow_A           98 ---GQFALSGSW---------------------------------DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR  141 (340)
T ss_dssp             ---SSEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             ---CCEEEEEcc---------------------------------cccceEEeecccceeeeecCCCCceeEEEEeecCc
Confidence               236655221                                 368999999999988887765 4666777665  5


Q ss_pred             eEEEEe-CCeEEEEECCCCceeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCC
Q 004255          204 IVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       204 ~LaV~~-~~~I~iwD~~t~~~l~tl~-t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                      +|+++. ++.+++||+.......... .|...             ...       +++.....                 
T Consensus       142 ~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~-----------------  184 (340)
T 4aow_A          142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW-------------VSC-------VRFSPNSS-----------------  184 (340)
T ss_dssp             CEEEEETTSCEEEECTTSCEEEEECSSSCSSC-------------EEE-------EEECSCSS-----------------
T ss_pred             cceeecCCCeEEEEEeCCCceEEEEeccccCc-------------ccc-------eEEccCCC-----------------
Confidence            666654 5679999987654321111 11110             011       12211100                 


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~  361 (765)
                               ..                                                ..+.+..|+.|++||+.+++.
T Consensus       185 ---------~~------------------------------------------------~~~s~~~d~~i~i~d~~~~~~  207 (340)
T 4aow_A          185 ---------NP------------------------------------------------IIVSCGWDKLVKVWNLANCKL  207 (340)
T ss_dssp             ---------SC------------------------------------------------EEEEEETTSCEEEEETTTTEE
T ss_pred             ---------Cc------------------------------------------------EEEEEcCCCEEEEEECCCCce
Confidence                     00                                                012345789999999999999


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc----CC----------CCC---Ccc-----ccCC-c
Q 004255          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR----SG----------SGN---HKY-----DWNS-S  418 (765)
Q Consensus       362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~----~~----------sG~---~~~-----~~~~-s  418 (765)
                      +..+.+|..+|.+|+|+|+|++||+|+.|| .|+|||+......    ..          .+.   ...     .|+. .
T Consensus       208 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg-~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~  286 (340)
T 4aow_A          208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDG-QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEG  286 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTC-EEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred             eeEecCCCCcEEEEEECCCCCEEEEEeCCC-eEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCC
Confidence            999999999999999999999999999966 5999998653110    00          000   000     0000 0


Q ss_pred             ceEEEEEec-------ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          419 HVHLYKLHR-------GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       419 ~~~l~~l~r-------G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      ...+.++..       ..+...|++|+|+|||++|++++.||+|+|||+.+
T Consensus       287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            011222211       01234699999999999999999999999999976

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.7e-20  Score=194.22  Aligned_cols=275  Identities=13%  Similarity=0.070  Sum_probs=190.7

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..++++.|..+.| .    +   ++.|++|..+| ++|||++ .+.+...+..|.++|..+++.|+             .
T Consensus        14 l~~h~~~v~~~~~-~----~---~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~-------------~   71 (313)
T 3odt_A           14 LKGHDQDVRDVVA-V----D---DSKVASVSRDGTVRLWSKD-DQWLGTVVYTGQGFLNSVCYDSE-------------K   71 (313)
T ss_dssp             ECCCSSCEEEEEE-E----E---TTEEEEEETTSEEEEEEES-SSEEEEEEEECSSCEEEEEEETT-------------T
T ss_pred             hhCCCCCcEEEEe-c----C---CCEEEEEEcCCcEEEEECC-CCEEEEEeecCCccEEEEEECCC-------------C
Confidence            4568889999988 3    1   34688888777 9999994 57778888899999999999974             2


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC---eEEEEEeC-CCCEEEEEecCCeEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---CYEHVLRF-RSSVCMVRCSPRIVA  206 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg---~~v~tL~~-~s~V~sV~~s~~~La  206 (765)
                      .+|++.+.                                 ++.|++|++...   +.+..+.. ...|.++.+++++|+
T Consensus        72 ~~l~~~~~---------------------------------dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~  118 (313)
T 3odt_A           72 ELLLFGGK---------------------------------DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVI  118 (313)
T ss_dssp             TEEEEEET---------------------------------TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEE
T ss_pred             CEEEEecC---------------------------------CCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEE
Confidence            36665321                                 257999998654   56677764 468999999998888


Q ss_pred             EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCC
Q 004255          207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (765)
Q Consensus       207 V~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~  282 (765)
                      ++. ++.|++||  +.+....+..+..+             ...+++.+   ++|+.++.+..+     ..|+....   
T Consensus       119 ~~~~d~~i~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~l~~~~~d~~i-----~i~d~~~~---  175 (313)
T 3odt_A          119 SGSWDKTAKVWK--EGSLVYNLQAHNAS-------------VWDAKVVSFSENKFLTASADKTI-----KLWQNDKV---  175 (313)
T ss_dssp             EEETTSEEEEEE--TTEEEEEEECCSSC-------------EEEEEEEETTTTEEEEEETTSCE-----EEEETTEE---
T ss_pred             EEeCCCCEEEEc--CCcEEEecccCCCc-------------eeEEEEccCCCCEEEEEECCCCE-----EEEecCce---
Confidence            766 55799999  66677777766542             23344433   677777654211     11220000   


Q ss_pred             CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i  362 (765)
                                 +                +.+...     .........++++..     ++.+..+|.|+|||+.+++.+
T Consensus       176 -----------~----------------~~~~~~-----~~~~i~~~~~~~~~~-----~~~~~~dg~i~i~d~~~~~~~  218 (313)
T 3odt_A          176 -----------I----------------KTFSGI-----HNDVVRHLAVVDDGH-----FISCSNDGLIKLVDMHTGDVL  218 (313)
T ss_dssp             -----------E----------------EEECSS-----CSSCEEEEEEEETTE-----EEEEETTSEEEEEETTTCCEE
T ss_pred             -----------E----------------EEEecc-----CcccEEEEEEcCCCe-----EEEccCCCeEEEEECCchhhh
Confidence                       0                011000     000001111111111     346778999999999999999


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (765)
Q Consensus       363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (765)
                      ..+.+|..+|.+++|+|+| .|++++.|| .|+|||+..       +          ..+..+. + +...|++++|+||
T Consensus       219 ~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-~v~iwd~~~-------~----------~~~~~~~-~-~~~~i~~~~~~~~  277 (313)
T 3odt_A          219 RTYEGHESFVYCIKLLPNG-DIVSCGEDR-TVRIWSKEN-------G----------SLKQVIT-L-PAISIWSVDCMSN  277 (313)
T ss_dssp             EEEECCSSCEEEEEECTTS-CEEEEETTS-EEEEECTTT-------C----------CEEEEEE-C-SSSCEEEEEECTT
T ss_pred             hhhhcCCceEEEEEEecCC-CEEEEecCC-EEEEEECCC-------C----------ceeEEEe-c-cCceEEEEEEccC
Confidence            9999999999999999999 588999866 599999965       3          3555554 2 2347999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC
Q 004255          443 SQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       443 g~~Las~S~dgTVhIwdl~~~  463 (765)
                      ++ +++++.||+|+||++...
T Consensus       278 ~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          278 GD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             SC-EEEEETTSCEEEEESCGG
T ss_pred             CC-EEEEeCCCcEEEEeCCCC
Confidence            99 557999999999999764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.89  E-value=2.3e-20  Score=200.21  Aligned_cols=265  Identities=16%  Similarity=0.158  Sum_probs=180.5

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeee-------------eccCCEEEEEEecCC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS-------------KRDGPVSFLQMQPFP  117 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells-------------~~dg~V~~v~~lP~p  117 (765)
                      ...+++.|..+.|..-      .++.|++|..+| ++|||++. ++....+.             .|.++|..+++.|+ 
T Consensus        39 ~~~h~~~v~~~~~s~~------~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  110 (408)
T 4a11_B           39 ERIHGGGINTLDIEPV------EGRYMLSGGSDGVIVLYDLEN-SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-  110 (408)
T ss_dssp             CCCCSSCEEEEEECTT------TCCEEEEEETTSCEEEEECCC-CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-
T ss_pred             eeccCCcEEEEEEecC------CCCEEEEEcCCCeEEEEECCC-CcccceEeccccccccccccccCCCcEEEEEEccC-
Confidence            4458899999998541      256788888776 99999965 33333332             48899999999973 


Q ss_pred             CCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEE
Q 004255          118 VKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCM  197 (765)
Q Consensus       118 ~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~s  197 (765)
                                 ...+|++.+.                                 +++|++||+.+++.+..+.+...+..
T Consensus       111 -----------~~~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~  146 (408)
T 4a11_B          111 -----------DTGMFTSSSF---------------------------------DKTLKVWDTNTLQTADVFNFEETVYS  146 (408)
T ss_dssp             -----------CTTCEEEEET---------------------------------TSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred             -----------CCcEEEEEeC---------------------------------CCeEEEeeCCCCccceeccCCCceee
Confidence                       1225554221                                 36899999999999999999999999


Q ss_pred             EEecC-----CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCcc
Q 004255          198 VRCSP-----RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR  271 (765)
Q Consensus       198 V~~s~-----~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~  271 (765)
                      +.+++     .+|+++. ++.|++||+.+++.+..+..|..+             ...++++|       +.        
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~--------  198 (408)
T 4a11_B          147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE-------------ILAVSWSP-------RY--------  198 (408)
T ss_dssp             EEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC-------------EEEEEECS-------SC--------
T ss_pred             eEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc-------------EEEEEECC-------CC--------
Confidence            99876     2666655 567999999999888887765542             23344433       10        


Q ss_pred             ccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeE
Q 004255          272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV  351 (765)
Q Consensus       272 ~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V  351 (765)
                                         ..+                                                ++.+..||.|
T Consensus       199 -------------------~~l------------------------------------------------l~~~~~dg~i  211 (408)
T 4a11_B          199 -------------------DYI------------------------------------------------LATASADSRV  211 (408)
T ss_dssp             -------------------TTE------------------------------------------------EEEEETTSCE
T ss_pred             -------------------CcE------------------------------------------------EEEEcCCCcE
Confidence                               000                                                1123457788


Q ss_pred             EEEECCCCc-EEEEe---------------ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC-CCCC----
Q 004255          352 VVKDFVTRA-IISQF---------------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSGN----  410 (765)
Q Consensus       352 ~IwDl~s~~-~i~~~---------------~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~-~sG~----  410 (765)
                      +|||+.++. .+..+               .+|..+|.+++|+|+|++|++++.||. |+|||+....... ..+.    
T Consensus       212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~  290 (408)
T 4a11_B          212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKVCNN  290 (408)
T ss_dssp             EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCCCCC
T ss_pred             EEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceecccccccc
Confidence            888887654 33333               679999999999999999999999775 9999986521100 0000    


Q ss_pred             --C--cc--------------------ccC-CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          411 --H--KY--------------------DWN-SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       411 --~--~~--------------------~~~-~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                        .  ..                    .|+ .....+..+. + +...|.+++|+||+++|++++.||+|+||++.....
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-G-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC-C-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             ccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec-c-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence              0  00                    000 1113344443 3 345799999999999999999999999999987654


Q ss_pred             C
Q 004255          466 D  466 (765)
Q Consensus       466 ~  466 (765)
                      .
T Consensus       369 ~  369 (408)
T 4a11_B          369 V  369 (408)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.89  E-value=7.5e-21  Score=203.83  Aligned_cols=237  Identities=11%  Similarity=0.198  Sum_probs=165.0

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      .++.+.|..+.|..       .+.+|++|..+| ++|||+. .+++...+..|.++|..+++.|+.             .
T Consensus        73 ~~h~~~V~~~~~~~-------~~~~l~s~s~D~~v~lwd~~-~~~~~~~~~~h~~~v~~v~~sp~~-------------~  131 (343)
T 2xzm_R           73 TGHNHFVSDLALSQ-------ENCFAISSSWDKTLRLWDLR-TGTTYKRFVGHQSEVYSVAFSPDN-------------R  131 (343)
T ss_dssp             CCCSSCEEEEEECS-------STTEEEEEETTSEEEEEETT-SSCEEEEEECCCSCEEEEEECSST-------------T
T ss_pred             ccCCCceEEEEECC-------CCCEEEEEcCCCcEEEEECC-CCcEEEEEcCCCCcEEEEEECCCC-------------C
Confidence            45667777777754       256788888776 9999995 567778888999999999999752             2


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCCEEEEEecCC----
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSPR----  203 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~----~~s~V~sV~~s~~----  203 (765)
                      +|++.+.                                 +++|++||+... ....+.    +...|.++++++.    
T Consensus       132 ~l~s~~~---------------------------------d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~  177 (343)
T 2xzm_R          132 QILSAGA---------------------------------EREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSA  177 (343)
T ss_dssp             EEEEEET---------------------------------TSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred             EEEEEcC---------------------------------CCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccc
Confidence            5654321                                 368999999844 333332    3458999999873    


Q ss_pred             --------eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccc
Q 004255          204 --------IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRL  272 (765)
Q Consensus       204 --------~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~  272 (765)
                              +|+++ .++.|++|| .+.+...++..|..+             ...++++|  ++||              
T Consensus       178 ~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~-------------v~~~~~s~~g~~l~--------------  229 (343)
T 2xzm_R          178 NKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN-------------VNHLSISPNGKYIA--------------  229 (343)
T ss_dssp             SCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSC-------------EEEEEECTTSSEEE--------------
T ss_pred             cccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcccc-------------ceEEEECCCCCEEE--------------
Confidence                    46654 467899999 456666677666542             23344433  2222              


Q ss_pred             cCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEE
Q 004255          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (765)
Q Consensus       273 s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~  352 (765)
                                                                                             +++.||.|+
T Consensus       230 -----------------------------------------------------------------------sgs~dg~v~  238 (343)
T 2xzm_R          230 -----------------------------------------------------------------------TGGKDKKLL  238 (343)
T ss_dssp             -----------------------------------------------------------------------EEETTCEEE
T ss_pred             -----------------------------------------------------------------------EEcCCCeEE
Confidence                                                                                   345688999


Q ss_pred             EEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-----
Q 004255          353 VKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-----  426 (765)
Q Consensus       353 IwDl~s-~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-----  426 (765)
                      |||+.. ......+ .|...|.+++|+|++.+|++++. ++ |+|||+.+..     .          ..+..+.     
T Consensus       239 iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d-~~-v~iw~~~~~~-----~----------~~~~~~~~~~~~  300 (343)
T 2xzm_R          239 IWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTD-QG-VKIFNLMTQS-----K----------APVCTIEAEPIT  300 (343)
T ss_dssp             EEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEES-SC-EEEEESSSCC-----S----------CSEEECCCCSGG
T ss_pred             EEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECC-CC-EEEEEeCCCC-----C----------CceEEeecCcch
Confidence            999954 3344444 35567999999999999886654 55 9999986521     0          1112221     


Q ss_pred             -----cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          427 -----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       427 -----rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                           +| +...|.+++|+|||++|++++.||+|+||++.+
T Consensus       301 ~~~~~~~-~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          301 KAEGQKG-KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             GBTTBCC-SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             hhhhhcC-CCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence                 13 334699999999999999999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.88  E-value=5.7e-21  Score=205.65  Aligned_cols=252  Identities=11%  Similarity=0.058  Sum_probs=180.6

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc------ceEeeeeccCCEEEEEEecCCCCCCCCC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN------FNELVSKRDGPVSFLQMQPFPVKDDGCE  124 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~------~~ells~~dg~V~~v~~lP~p~~~~~~d  124 (765)
                      ...+++.|..+.|+.         +.|++|..+| ++|||++. ++      +...+..|.++|.++++.|+.       
T Consensus        12 ~~~h~~~i~~~~~~~---------~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------   74 (397)
T 1sq9_A           12 GKAHDADIFSVSACN---------SFTVSCSGDGYLKVWDNKL-LDNENPKDKSYSHFVHKSGLHHVDVLQAI-------   74 (397)
T ss_dssp             SSCSSSCEEEEEECS---------SEEEEEETTSEEEEEESBC-CTTCCGGGGEEEEECCTTCEEEEEEEEEE-------
T ss_pred             hhhhhcCeEEEEecC---------CeEEEEcCCCEEEEEECCC-cccccCCCcceEEecCCCcEEEEEEeccc-------
Confidence            467889999999954         4777777766 99999964 44      567777899999999999741       


Q ss_pred             CccccC---CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----EEEEeCC----
Q 004255          125 GFRKLH---PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----EHVLRFR----  192 (765)
Q Consensus       125 ~f~~sr---pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-----v~tL~~~----  192 (765)
                        ....   .+|++.+.                                 +++|++||+.+++.     +..+..+    
T Consensus        75 --~~~g~~~~~l~s~~~---------------------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  119 (397)
T 1sq9_A           75 --ERDAFELCLVATTSF---------------------------------SGDLLFYRITREDETKKVIFEKLDLLDSDM  119 (397)
T ss_dssp             --ETTTEEEEEEEEEET---------------------------------TSCEEEEEEEECTTTCCEEEEEECCSCTTG
T ss_pred             --ccCCccccEEEEEcC---------------------------------CCCEEEEEccCCcccccccceeeccccccc
Confidence              0012   35654221                                 36899999999887     8888765    


Q ss_pred             --CCEEEEEec----C--Ce-EEEEe-CCeEEEEECCC------CceeE-----EEEe-------cCCcccCCCCccccc
Q 004255          193 --SSVCMVRCS----P--RI-VAVGL-ATQIYCFDALT------LENKF-----SVLT-------YPVPQLAGQGAVGIN  244 (765)
Q Consensus       193 --s~V~sV~~s----~--~~-LaV~~-~~~I~iwD~~t------~~~l~-----tl~t-------~p~p~~~~~~~~~~~  244 (765)
                        ..|.+++++    +  ++ |+++. ++.|++||+.+      ++.+.     ++..       +..            
T Consensus       120 ~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  187 (397)
T 1sq9_A          120 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ------------  187 (397)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC------------
T ss_pred             CCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCC------------
Confidence              799999999    5  56 77664 56899999887      44333     2211       000            


Q ss_pred             cccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255          245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (765)
Q Consensus       245 ~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~  324 (765)
                       ....++++                                                                       
T Consensus       188 -~i~~~~~~-----------------------------------------------------------------------  195 (397)
T 1sq9_A          188 -FATSVDIS-----------------------------------------------------------------------  195 (397)
T ss_dssp             -CCCEEEEC-----------------------------------------------------------------------
T ss_pred             -CceEEEEC-----------------------------------------------------------------------
Confidence             00011111                                                                       


Q ss_pred             CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc---C---CCCeEEEEECCCCCEEEEEEcC---CCEEE
Q 004255          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---H---TSPISALCFDPSGTLLVTASVY---GNNIN  395 (765)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a---H---~~~IsaLaFSpdG~lLATaS~d---Gt~Ir  395 (765)
                              +++     .++.+..+|.|+|||+.+++.+..+..   |   ..+|.+++|+|+|++|++++.|   | .|+
T Consensus       196 --------~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g-~i~  261 (397)
T 1sq9_A          196 --------ERG-----LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG-CIT  261 (397)
T ss_dssp             --------TTS-----EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEE-EEE
T ss_pred             --------CCc-----eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCc-eEE
Confidence                    100     123456789999999999999999999   9   9999999999999999999996   5 599


Q ss_pred             EEeCCCCcccCCCCCCccccCCcceEEEEEeccc-----------ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-----------TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       396 VWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~-----------~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      |||+..       +          ..+..+....           +...|.+++|+||+++|++++.||+|+|||+....
T Consensus       262 i~d~~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          262 LYETEF-------G----------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             EEETTT-------C----------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEECCC-------C----------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            999964       2          3555554200           34579999999999999999999999999998754


Q ss_pred             CCcccc
Q 004255          465 GDSGFQ  470 (765)
Q Consensus       465 g~~~~~  470 (765)
                      ....+.
T Consensus       325 ~~~~~~  330 (397)
T 1sq9_A          325 RITTLN  330 (397)
T ss_dssp             EEEEEE
T ss_pred             eeEEEe
Confidence            333333

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.88  E-value=2.8e-20  Score=203.43  Aligned_cols=270  Identities=11%  Similarity=0.050  Sum_probs=185.9

Q ss_pred             CeEEEEEecCcEEEEEccCCCcceEeeee-ccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNGFQVLDVEDASNFNELVSK-RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~-~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      ..+++.|.++.++|||++ .+++..++.. |.++|.++++.|+             ..+|++.+.               
T Consensus       104 ~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~~~~~v~~v~~s~~-------------~~~l~~~~~---------------  154 (401)
T 4aez_A          104 LNVVAVALERNVYVWNAD-SGSVSALAETDESTYVASVKWSHD-------------GSFLSVGLG---------------  154 (401)
T ss_dssp             TSEEEEEETTEEEEEETT-TCCEEEEEECCTTCCEEEEEECTT-------------SSEEEEEET---------------
T ss_pred             CCEEEEECCCeEEEeeCC-CCcEeEeeecCCCCCEEEEEECCC-------------CCEEEEECC---------------
Confidence            457777767779999995 5666666665 7889999999974             236665321               


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecCCeEEEEe-CCeEEEEECCC-CceeEEEEec
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPRIVAVGL-ATQIYCFDALT-LENKFSVLTY  230 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t-~~~l~tl~t~  230 (765)
                                        +++|++||+.+++.+.++.. ...|.++++++++|+++. ++.|++||+.+ .+....+..|
T Consensus       155 ------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  216 (401)
T 4aez_A          155 ------------------NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH  216 (401)
T ss_dssp             ------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             ------------------CCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence                              25899999999999999975 469999999999888766 46799999984 5556666666


Q ss_pred             CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255          231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (765)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G  308 (765)
                      ..+             ...++++|  ++||+++.+..+     ..|+..+.            ..+              
T Consensus       217 ~~~-------------v~~~~~~~~~~~l~s~~~d~~v-----~iwd~~~~------------~~~--------------  252 (401)
T 4aez_A          217 SSE-------------VCGLAWRSDGLQLASGGNDNVV-----QIWDARSS------------IPK--------------  252 (401)
T ss_dssp             SSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETTCS------------SEE--------------
T ss_pred             CCC-------------eeEEEEcCCCCEEEEEeCCCeE-----EEccCCCC------------Ccc--------------
Confidence            542             35678887  788888765311     12332211            000              


Q ss_pred             cceeecccccccCCCCCCCCccCCCccccccccccc--cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 004255          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD--MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT  386 (765)
Q Consensus       309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~--~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLAT  386 (765)
                        .++..+.      .....+.++++...   .++.  +..||.|++||+.+++.+..+. |..+|.+++|+|+|.+|++
T Consensus       253 --~~~~~~~------~~v~~~~~~p~~~~---ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          253 --FTKTNHN------AAVKAVAWCPWQSN---LLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             --EEECCCS------SCCCEEEECTTSTT---EEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred             --EEecCCc------ceEEEEEECCCCCC---EEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence              0111110      11112222222211   1122  3479999999999999988886 5678999999999999999


Q ss_pred             EE--cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          387 AS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       387 aS--~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      ++  .+| .|+|||+..       +        ....+..+. + +...|.+++|+|||++|++++.||+|+||++....
T Consensus       321 ~~g~~dg-~i~v~~~~~-------~--------~~~~~~~~~-~-h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          321 THGFPDN-NLSIWSYSS-------S--------GLTKQVDIP-A-HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EECTTTC-EEEEEEEET-------T--------EEEEEEEEE-C-CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             EeecCCC-cEEEEecCC-------c--------cceeEEEec-C-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            65  545 699999854       2        012334443 3 34579999999999999999999999999998654


Q ss_pred             C
Q 004255          465 G  465 (765)
Q Consensus       465 g  465 (765)
                      .
T Consensus       383 ~  383 (401)
T 4aez_A          383 H  383 (401)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.88  E-value=5.6e-21  Score=224.53  Aligned_cols=281  Identities=15%  Similarity=0.181  Sum_probs=193.7

Q ss_pred             hceeeeeccCCcceeeeccccccccceeccc--CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-
Q 004255           20 SSCLKTVSTNASTVASTVRSAGASVAASISN--ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-   95 (765)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g-   95 (765)
                      ...|.-+-+|..++...+..|...++..+..  ....|++.|..+.|..    +  ...+|++|..+| ++|||+...+ 
T Consensus       344 ~~~~~~~~~G~~~~~~al~~a~~~~~~~l~~~~~l~~H~~~V~~v~~~~----~--~~~~l~s~s~D~~i~~W~~~~~~~  417 (694)
T 3dm0_A          344 RTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPI----D--NADIIVSASRDKSIILWKLTKDDK  417 (694)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHCSSEEEEEEECCSSCEEEEECCT----T--CCSEEEEEETTSEEEEEECCCSTT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHhhhcccchhhhcccCCceeEEEEecC----C--CCCEEEEEeCCCcEEEEEccCCCc
Confidence            3334334456666655555554444433332  2567999999998854    1  246888888876 9999996432 


Q ss_pred             ---cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCC
Q 004255           96 ---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSP  172 (765)
Q Consensus        96 ---~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p  172 (765)
                         .....+..|.+.|.++.+.|+             ..+|++.+.                                 +
T Consensus       418 ~~~~~~~~~~~h~~~v~~v~~s~~-------------g~~l~sgs~---------------------------------D  451 (694)
T 3dm0_A          418 AYGVAQRRLTGHSHFVEDVVLSSD-------------GQFALSGSW---------------------------------D  451 (694)
T ss_dssp             CSCEEEEEEECCSSCEEEEEECTT-------------SSEEEEEET---------------------------------T
T ss_pred             ccccccceecCCCCcEEEEEECCC-------------CCEEEEEeC---------------------------------C
Confidence               245678889999999999874             236654221                                 3


Q ss_pred             CEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (765)
                      ++|+|||+.+++.++.+..| ..|.+|++++  ++|+++. ++.|++||+... +...+......    +     .....
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~----h-----~~~v~  521 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEG----H-----RDWVS  521 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTS----C-----SSCEE
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCCC----C-----CCcEE
Confidence            69999999999999999755 6899999987  5666654 668999997643 33333211000    0     00011


Q ss_pred             eeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (765)
Q Consensus       249 ~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~  328 (765)
                      .++++|       +..                          .                                     
T Consensus       522 ~~~~~~-------~~~--------------------------~-------------------------------------  531 (694)
T 3dm0_A          522 CVRFSP-------NTL--------------------------Q-------------------------------------  531 (694)
T ss_dssp             EEEECS-------CSS--------------------------S-------------------------------------
T ss_pred             EEEEeC-------CCC--------------------------c-------------------------------------
Confidence            122211       100                          0                                     


Q ss_pred             ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS  408 (765)
Q Consensus       329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~s  408 (765)
                                 ..+++++.||+|+|||+.+++.+..+.+|..+|.+|+|+|+|++|+|++.||+ |+|||+..       
T Consensus       532 -----------~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~-------  592 (694)
T 3dm0_A          532 -----------PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAE-------  592 (694)
T ss_dssp             -----------CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTT-------
T ss_pred             -----------ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCC-------
Confidence                       01224567899999999999999999999999999999999999999999765 99999965       


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      +          .+++.+..   ...|.+++|+||+.+|++++ ++.|+|||+.....
T Consensus       593 ~----------~~~~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~  635 (694)
T 3dm0_A          593 G----------KKLYSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSI  635 (694)
T ss_dssp             T----------EEEECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEE
T ss_pred             C----------ceEEEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCC
Confidence            3          45555532   34699999999999988876 55699999986433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.88  E-value=9.4e-21  Score=204.37  Aligned_cols=283  Identities=13%  Similarity=0.070  Sum_probs=188.4

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRK  128 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells--~~dg~V~~v~~lP~p~~~~~~d~f~~  128 (765)
                      ...+.+.|..+.|..    +  ..++|++|..+| ++|||+. .++....+.  .|.+.|..+++.|+            
T Consensus        69 ~~~h~~~v~~~~~~~----~--~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~~~~------------  129 (383)
T 3ei3_B           69 ASPFDRRVTSLEWHP----T--HPTTVAVGSKGGDIILWDYD-VQNKTSFIQGMGPGDAITGMKFNQF------------  129 (383)
T ss_dssp             ECCCSSCEEEEEECS----S--CTTEEEEEEBTSCEEEEETT-STTCEEEECCCSTTCBEEEEEEETT------------
T ss_pred             ccCCCCCEEEEEECC----C--CCCEEEEEcCCCeEEEEeCC-CcccceeeecCCcCCceeEEEeCCC------------
Confidence            456888999999976    1  126888888776 9999996 455656655  58899999999972            


Q ss_pred             cCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-C---CCEEEEEecC--
Q 004255          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-R---SSVCMVRCSP--  202 (765)
Q Consensus       129 srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~---s~V~sV~~s~--  202 (765)
                      ...+|++.+.                                 +++|++||+++ +.+..+.. .   ..|.++++++  
T Consensus       130 ~~~~l~s~~~---------------------------------d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~  175 (383)
T 3ei3_B          130 NTNQLFVSSI---------------------------------RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR  175 (383)
T ss_dssp             EEEEEEEEET---------------------------------TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT
T ss_pred             CCCEEEEEeC---------------------------------CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC
Confidence            1235654321                                 36899999986 55555543 2   5799999987  


Q ss_pred             CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--c-eEEEecCCceecCCccccCCCCC
Q 004255          203 RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R-WLAYASNTLLLSNSGRLSPQNLT  278 (765)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r-~LAyas~~~~~~~~G~~s~~~lt  278 (765)
                      ++|+++. ++.|++||+ +++.+.++..|..+             ...++++|  + +|+.++.+..+     ..|+..+
T Consensus       176 ~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~-------------v~~~~~~~~~~~~l~s~~~d~~i-----~iwd~~~  236 (383)
T 3ei3_B          176 QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAK-------------VTHAEFNPRCDWLMATSSVDATV-----KLWDLRN  236 (383)
T ss_dssp             TEEEEEETTSEEEEEET-TSCEEEEEECSSSC-------------EEEEEECSSCTTEEEEEETTSEE-----EEEEGGG
T ss_pred             CEEEEECCCCCEEEEEC-CCCEEEEeccCCCc-------------EEEEEECCCCCCEEEEEeCCCEE-----EEEeCCC
Confidence            6777765 468999999 67788888776652             35688888  4 78887765311     1233221


Q ss_pred             CCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCC-ccccccccccccCCCCeEEEEECC
Q 004255          279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS-VWKVGRHAGADMDNAGIVVVKDFV  357 (765)
Q Consensus       279 ~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~-~~~~~~~~~~~~~~dG~V~IwDl~  357 (765)
                      ...        .+.++                +++ ++      ......+.+++ +++    .++.+..||.|+|||+.
T Consensus       237 ~~~--------~~~~~----------------~~~-~~------~~~v~~~~~s~~~~~----~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          237 IKD--------KNSYI----------------AEM-PH------EKPVNAAYFNPTDST----KLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             CCS--------TTCEE----------------EEE-EC------SSCEEEEEECTTTSC----EEEEEESSSEEEEEETT
T ss_pred             CCc--------ccceE----------------EEe-cC------CCceEEEEEcCCCCC----EEEEEcCCCcEEEEECC
Confidence            100        00000                111 00      01111222233 222    24466789999999999


Q ss_pred             CCcEEEEeccCC-----------------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255          358 TRAIISQFKAHT-----------------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (765)
Q Consensus       358 s~~~i~~~~aH~-----------------~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~  420 (765)
                      +++.+..+.+|.                 ..+.+++|+|+|++  +++.||. |+|||+..       +          .
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~-------~----------~  341 (383)
T 3ei3_B          282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANS-------G----------G  341 (383)
T ss_dssp             BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTT-------C----------C
T ss_pred             CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCC-------C----------c
Confidence            988777777653                 34555777777776  6777664 99999965       3          4


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .+..+....+...+.+++|+||+++|++++ ||+|+|||++.
T Consensus       342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          342 LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            667775433345677889999999999997 99999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.88  E-value=8.2e-21  Score=204.45  Aligned_cols=248  Identities=14%  Similarity=0.130  Sum_probs=180.3

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCC---eEEEEEecCc-EEEEEccCCCcc-----eEeeeec-----cCCEEEEEEecCCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFK---QVLLLGYQNG-FQVLDVEDASNF-----NELVSKR-----DGPVSFLQMQPFPV  118 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~---~vL~~G~~~G-~qVWdv~~~g~~-----~ells~~-----dg~V~~v~~lP~p~  118 (765)
                      ..+++.|..+.|..-.   ...+   +.|++|..+| ++|||++. ++.     ...+..|     +++|.++++.|.+.
T Consensus        59 ~~h~~~v~~~~~~~~~---~~~g~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           59 FVHKSGLHHVDVLQAI---ERDAFELCLVATTSFSGDLLFYRITR-EDETKKVIFEKLDLLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             ECCTTCEEEEEEEEEE---ETTTEEEEEEEEEETTSCEEEEEEEE-CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred             ecCCCcEEEEEEeccc---ccCCccccEEEEEcCCCCEEEEEccC-CcccccccceeecccccccCCCcEEEEEEeeccC
Confidence            3567778888887610   0114   6788877765 99999964 554     5667777     58999999993210


Q ss_pred             CCCCCCCccccCCE-EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC------CeEEE----
Q 004255          119 KDDGCEGFRKLHPF-LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS------HCYEH----  187 (765)
Q Consensus       119 ~~~~~d~f~~srpL-Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt------g~~v~----  187 (765)
                               ....+ |++.+.                                 ++.|++||+++      ++.+.    
T Consensus       135 ---------~~~~~~l~~~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~  172 (397)
T 1sq9_A          135 ---------RLLSHRLVATDV---------------------------------KGTTYIWKFHPFADESNSLTLNWSPT  172 (397)
T ss_dssp             ------------CEEEEEEET---------------------------------TSCEEEEEEESSSSHHHHTTTCCCCE
T ss_pred             ---------CCCceEEEEEeC---------------------------------CCcEEEEeCCccccccccceeeccCc
Confidence                     01235 554221                                 25899999998      77666    


Q ss_pred             -EEe--------CCCCEEEEEecCC-eEEEEeC-CeEEEEECCCCceeEEEEe---c---CCcccCCCCcccccccccee
Q 004255          188 -VLR--------FRSSVCMVRCSPR-IVAVGLA-TQIYCFDALTLENKFSVLT---Y---PVPQLAGQGAVGINVGYGPM  250 (765)
Q Consensus       188 -tL~--------~~s~V~sV~~s~~-~LaV~~~-~~I~iwD~~t~~~l~tl~t---~---p~p~~~~~~~~~~~~~~~~~  250 (765)
                       .+.        ....|.++++++. +|+++.. +.|++||+.+++.+..+..   |   ..+             ...+
T Consensus       173 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~-------------i~~i  239 (397)
T 1sq9_A          173 LELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS-------------IRSV  239 (397)
T ss_dssp             EEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC-------------EEEE
T ss_pred             ceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc-------------cceE
Confidence             664        2568999999874 6676654 5799999999988888876   5   321             2334


Q ss_pred             EEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255          251 AVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (765)
Q Consensus       251 Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~  328 (765)
                      +++|  ++|+.                                                                     
T Consensus       240 ~~~~~~~~l~~---------------------------------------------------------------------  250 (397)
T 1sq9_A          240 KFSPQGSLLAI---------------------------------------------------------------------  250 (397)
T ss_dssp             EECSSTTEEEE---------------------------------------------------------------------
T ss_pred             EECCCCCEEEE---------------------------------------------------------------------
Confidence            4433  22222                                                                     


Q ss_pred             ccCCCccccccccccccCCC---CeEEEEECCCCcEEEEecc-------------CCCCeEEEEECCCCCEEEEEEcCCC
Q 004255          329 VSPNSVWKVGRHAGADMDNA---GIVVVKDFVTRAIISQFKA-------------HTSPISALCFDPSGTLLVTASVYGN  392 (765)
Q Consensus       329 ~s~s~~~~~~~~~~~~~~~d---G~V~IwDl~s~~~i~~~~a-------------H~~~IsaLaFSpdG~lLATaS~dGt  392 (765)
                                      +..|   |.|+|||+.+++.+..+.+             |..+|.+++|+|+|.+|++++.|| 
T Consensus       251 ----------------~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-  313 (397)
T 1sq9_A          251 ----------------AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-  313 (397)
T ss_dssp             ----------------EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-
T ss_pred             ----------------EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-
Confidence                            2345   8999999999999999999             999999999999999999999966 


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----cc--------------ccccEEEEEEccCC----------
Q 004255          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GI--------------TSATIQDICFSHYS----------  443 (765)
Q Consensus       393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r-----G~--------------~~a~I~slaFSpDg----------  443 (765)
                      .|+|||+..       +          ..+..+..     ++              +...|++++|+|||          
T Consensus       314 ~i~iwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~  376 (397)
T 1sq9_A          314 KLRFWDVKT-------K----------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN  376 (397)
T ss_dssp             EEEEEETTT-------T----------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred             eEEEEEcCC-------C----------ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence            599999965       2          45566641     21              14679999999999          


Q ss_pred             CEEEEEeCCCcEEEEeCCC
Q 004255          444 QWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl~~  462 (765)
                      ++|++++.||+|+||++..
T Consensus       377 ~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          377 ESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             CEEEEEETTTEEEEEEEEC
T ss_pred             ceEEEecCCCcEEEEEcCC
Confidence            7999999999999999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.88  E-value=4.7e-21  Score=207.82  Aligned_cols=241  Identities=14%  Similarity=0.097  Sum_probs=164.5

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEec------Cc-EEEEEccCCC---cceEeeeeccCCEEEEEEecCCCCCCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ------NG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDG  122 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~------~G-~qVWdv~~~g---~~~ells~~dg~V~~v~~lP~p~~~~~  122 (765)
                      ..+...|.-+.|..       ++++|++|..      +| +++|+.....   .+......|.+.|..|++.|+      
T Consensus        39 ~~H~~~V~~v~fSp-------DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d------  105 (357)
T 4g56_B           39 ACMEVQIGAVRYRR-------DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE------  105 (357)
T ss_dssp             -CCCSEEEEEEECS-------SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT------
T ss_pred             ccccCCEEEEEECC-------CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC------
Confidence            44788899999955       4788999886      33 7888874321   122233467788999999974      


Q ss_pred             CCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-----CCCCEEE
Q 004255          123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCM  197 (765)
Q Consensus       123 ~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-----~~s~V~s  197 (765)
                             ..+| +.+.                                 +++|+|||+.+++.+....     +.+.|.+
T Consensus       106 -------~~~l-~~s~---------------------------------dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~  144 (357)
T 4g56_B          106 -------KGIL-VASD---------------------------------SGAVELWEILEKESLLVNKFAKYEHDDIVKT  144 (357)
T ss_dssp             -------TEEE-EEET---------------------------------TSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred             -------CCEE-EEEC---------------------------------CCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence                   1243 3221                                 2589999999988664432     3468999


Q ss_pred             EEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccC
Q 004255          198 VRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSP  274 (765)
Q Consensus       198 V~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~  274 (765)
                      |++++  ++|+++. ++.|++||+.+++++..+..|..+             ...+++++       +.           
T Consensus       145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~-------------v~~v~~s~-------~~-----------  193 (357)
T 4g56_B          145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-------------VNCVAACP-------GK-----------  193 (357)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECT-------TC-----------
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EEEEEEcc-------CC-----------
Confidence            99997  5777765 567999999999988888776542             12333321       10           


Q ss_pred             CCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEE
Q 004255          275 QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVK  354 (765)
Q Consensus       275 ~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~Iw  354 (765)
                                      ..+                                                ++.+..||.|+||
T Consensus       194 ----------------~~~------------------------------------------------~~s~~~dg~v~~w  209 (357)
T 4g56_B          194 ----------------DTI------------------------------------------------FLSCGEDGRILLW  209 (357)
T ss_dssp             ----------------SSC------------------------------------------------EEEEETTSCEEEC
T ss_pred             ----------------Cce------------------------------------------------eeeeccCCceEEE
Confidence                            000                                                1134568999999


Q ss_pred             ECCCCcEEEEe--ccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 004255          355 DFVTRAIISQF--KAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS  431 (765)
Q Consensus       355 Dl~s~~~i~~~--~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~  431 (765)
                      |+.+++.+..+  ..|...|.+++|+|+ +.+||+|+.|+. |+|||+..       +          ..+..+. + +.
T Consensus       210 d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~-------~----------~~~~~~~-~-~~  269 (357)
T 4g56_B          210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKN-------P----------DSAQTSA-V-HS  269 (357)
T ss_dssp             CTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSC-------G----------GGCEEEC-C-CS
T ss_pred             ECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCC-------C----------cEeEEEe-c-cc
Confidence            99998876655  467788999999997 578999999765 99999965       2          2444553 3 33


Q ss_pred             ccEEEEEEccCC-CEEEEEeCCCcEEEEeCCC
Q 004255          432 ATIQDICFSHYS-QWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       432 a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~  462 (765)
                      ..|++|+|+||+ ++||+++.|++|+|||++.
T Consensus       270 ~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          270 QNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             SCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence            569999999998 6899999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.88  E-value=1.1e-20  Score=205.43  Aligned_cols=252  Identities=13%  Similarity=0.115  Sum_probs=176.9

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      ++.|++|..+| ++|||+. .+.+..++..|.++|.++++.|+             ..+|++.+.               
T Consensus       109 ~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~-------------~~~l~s~s~---------------  159 (420)
T 3vl1_A          109 MRRFILGTTEGDIKVLDSN-FNLQREIDQAHVSEITKLKFFPS-------------GEALISSSQ---------------  159 (420)
T ss_dssp             SCEEEEEETTSCEEEECTT-SCEEEEETTSSSSCEEEEEECTT-------------SSEEEEEET---------------
T ss_pred             CCEEEEEECCCCEEEEeCC-CcceeeecccccCccEEEEECCC-------------CCEEEEEeC---------------
Confidence            56788888776 9999995 57777788899999999999974             236665321               


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                                        +++|++||+.+++.+..+.. ...|.++++++  ++|+++. ++.|++||+.+++.+.++..
T Consensus       160 ------------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  221 (420)
T 3vl1_A          160 ------------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR  221 (420)
T ss_dssp             ------------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred             ------------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence                              36899999999999999985 46899999987  5677655 56799999999998888876


Q ss_pred             cCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccc
Q 004255          230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL  309 (765)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~  309 (765)
                      +..+..          ....+++.+      ......       .......                             
T Consensus       222 ~~~~~~----------~v~~~~~~~------~~~~~~-------~~~~~~~-----------------------------  249 (420)
T 3vl1_A          222 KENPHD----------GVNSIALFV------GTDRQL-------HEISTSK-----------------------------  249 (420)
T ss_dssp             TTBTTC----------CEEEEEEEE------CCCSSC-------GGGCCCC-----------------------------
T ss_pred             CCCCCC----------CccEEEEec------CCccee-------eecccCc-----------------------------
Confidence            443200          112233211      111000       0000000                             


Q ss_pred             ceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC-EEEEE
Q 004255          310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT-LLVTA  387 (765)
Q Consensus       310 ~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~-lLATa  387 (765)
                                      .....++++++    .++.+..||.|+|||+.+++.+..+. +|..+|.+++|+|+|. +|+++
T Consensus       250 ----------------v~~~~~s~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          250 ----------------KNNLEFGTYGK----YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             ----------------CCTTCSSCTTE----EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred             ----------------ccceEEcCCCC----EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence                            01111222222    23456789999999999998877765 5899999999999999 99999


Q ss_pred             EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       388 S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      +.|| .|+|||+..       +.         ..+..+. +++...|.++.| +|+++|++++.|++|+||++....
T Consensus       310 ~~dg-~i~vwd~~~-------~~---------~~~~~~~-~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          310 YENG-MLAQWDLRS-------PE---------CPVGEFL-INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             ETTS-EEEEEETTC-------TT---------SCSEEEE-ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred             eCCC-eEEEEEcCC-------Cc---------Cchhhhh-ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence            9966 599999965       21         1234443 334457888855 588999999999999999998743

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.88  E-value=1.9e-21  Score=211.88  Aligned_cols=264  Identities=16%  Similarity=0.134  Sum_probs=171.8

Q ss_pred             EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 004255           86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS  165 (765)
Q Consensus        86 ~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~  165 (765)
                      ..+|+.. ...+..++.+|.++|.++++.|+             ..+|+..+.                           
T Consensus        48 ~~~~~~~-~~~~~~~l~gH~~~V~~~~~sp~-------------~~~l~s~s~---------------------------   86 (380)
T 3iz6_a           48 AVSFNPT-DLVCCRTLQGHSGKVYSLDWTPE-------------KNWIVSASQ---------------------------   86 (380)
T ss_dssp             CCCCCCC-CCEEEEEECCCSSCEEEEEECTT-------------SSCEEEEET---------------------------
T ss_pred             ccccccc-eeEEeecccccccEEEEEEEcCC-------------CCEEEEEeC---------------------------
Confidence            3456653 34466789999999999999975             236655221                           


Q ss_pred             CCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCce-------eEEEEecCCcc
Q 004255          166 GNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLEN-------KFSVLTYPVPQ  234 (765)
Q Consensus       166 ~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~-------l~tl~t~p~p~  234 (765)
                            +++|+|||+.+++.+++++.+ ..|.++++++  ++|+++. ++.|++||+.+...       ...+.+|... 
T Consensus        87 ------D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~-  159 (380)
T 3iz6_a           87 ------DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY-  159 (380)
T ss_dssp             ------TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC-
T ss_pred             ------CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc-
Confidence                  369999999999999999876 5799999987  6777754 56799999876431       1222233221 


Q ss_pred             cCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccce
Q 004255          235 LAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK  311 (765)
Q Consensus       235 ~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~k  311 (765)
                                  ...+++.|   ..|++++.+..     ...|+..+..            .+..+..    ...     
T Consensus       160 ------------v~~~~~~~~~~~~l~s~s~D~~-----i~~wd~~~~~------------~~~~~~~----~~~-----  201 (380)
T 3iz6_a          160 ------------ASSCQYVPDQETRLITGSGDQT-----CVLWDVTTGQ------------RISIFGS----EFP-----  201 (380)
T ss_dssp             ------------CCCCBCCSSSSSCEEEECTTSC-----EEEECTTTCC------------EEEEECC----CSS-----
T ss_pred             ------------eEEEEEecCCCCEEEEECCCCc-----EEEEEcCCCc------------EEEEeec----ccC-----
Confidence                        12344544   45777665421     1234332210            0000000    000     


Q ss_pred             eecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 004255          312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTASVY  390 (765)
Q Consensus       312 tls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~-s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d  390 (765)
                        .++..      ......+++   .+...+++++.||+|+|||+. .++.+..+.+|..+|.+++|+|+|.+|||||.|
T Consensus       202 --~~h~~------~v~~~~~~~---~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  270 (380)
T 3iz6_a          202 --SGHTA------DVLSLSINS---LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD  270 (380)
T ss_dssp             --SSCCS------CEEEEEECS---SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred             --CCCcc------CeEEEEeec---CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence              00000      000111111   011124577899999999998 457888999999999999999999999999997


Q ss_pred             CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-----cccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-----SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~-----~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      |+ |+|||+..       +          ..+..+.....     ...|.+++|+|||++|++++.||+|+|||+....
T Consensus       271 ~~-i~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  331 (380)
T 3iz6_a          271 GT-CRLFDMRT-------G----------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE  331 (380)
T ss_dssp             SC-EEEEETTT-------T----------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred             Ce-EEEEECCC-------C----------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence            75 99999965       3          34444432111     1248899999999999999999999999987543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.88  E-value=2.6e-20  Score=218.89  Aligned_cols=239  Identities=16%  Similarity=0.192  Sum_probs=170.9

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      .+|.+.|..+.|..       .++.|++|..+| ++|||+. .+.....+..|.++|.++++.|+.             .
T Consensus       427 ~~h~~~v~~v~~s~-------~g~~l~sgs~Dg~v~vwd~~-~~~~~~~~~~h~~~v~~~~~s~~~-------------~  485 (694)
T 3dm0_A          427 TGHSHFVEDVVLSS-------DGQFALSGSWDGELRLWDLA-AGVSTRRFVGHTKDVLSVAFSLDN-------------R  485 (694)
T ss_dssp             ECCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEECTTS-------------S
T ss_pred             cCCCCcEEEEEECC-------CCCEEEEEeCCCcEEEEECC-CCcceeEEeCCCCCEEEEEEeCCC-------------C
Confidence            45666777777754       367888888776 9999995 566777888999999999999742             2


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCCEEEEEecCC----
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSPR----  203 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~----~~s~V~sV~~s~~----  203 (765)
                      +|++.+.                                 +++|+|||+..........    +...|.++++++.    
T Consensus       486 ~l~s~s~---------------------------------D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          486 QIVSASR---------------------------------DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             CEEEEET---------------------------------TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             EEEEEeC---------------------------------CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            5554221                                 3689999987554433322    3457999999873    


Q ss_pred             eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCC
Q 004255          204 IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPS  280 (765)
Q Consensus       204 ~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~  280 (765)
                      +|+++ .++.|++||+.+.++..++..|..+             ...++++|  ++|                       
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~v~~spdg~~l-----------------------  576 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGY-------------VSTVAVSPDGSLC-----------------------  576 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECTTSSEE-----------------------
T ss_pred             eEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EEEEEEeCCCCEE-----------------------
Confidence            46655 4668999999999888888776542             23344433  122                       


Q ss_pred             CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (765)
Q Consensus       281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~  360 (765)
                                                                                    ++++.||.|+|||+.+++
T Consensus       577 --------------------------------------------------------------~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          577 --------------------------------------------------------------ASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             --------------------------------------------------------------EEEETTSBCEEEETTTTE
T ss_pred             --------------------------------------------------------------EEEeCCCeEEEEECCCCc
Confidence                                                                          134568899999999999


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec------------c
Q 004255          361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR------------G  428 (765)
Q Consensus       361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r------------G  428 (765)
                      .+..+..| ..|.+++|+|++.+|++++. + .|+|||+...                 ..+..+..            +
T Consensus       595 ~~~~~~~~-~~v~~~~~sp~~~~l~~~~~-~-~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~  654 (694)
T 3dm0_A          595 KLYSLEAN-SVIHALCFSPNRYWLCAATE-H-GIKIWDLESK-----------------SIVEDLKVDLKAEAEKADNSG  654 (694)
T ss_dssp             EEECCBCS-SCEEEEEECSSSSEEEEEET-T-EEEEEETTTT-----------------EEEEEECCCCC----------
T ss_pred             eEEEecCC-CcEEEEEEcCCCcEEEEEcC-C-CEEEEECCCC-----------------CChhhhccccccccccccccc
Confidence            98888765 68999999999999988876 4 4999999652                 12222210            0


Q ss_pred             -----cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          429 -----ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       429 -----~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                           .+...+.+++|||||++|++++.||+|+||++..+
T Consensus       655 ~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~~  694 (694)
T 3dm0_A          655 PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY  694 (694)
T ss_dssp             ------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccCC
Confidence                 00113789999999999999999999999999753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.87  E-value=7.2e-20  Score=202.37  Aligned_cols=275  Identities=15%  Similarity=0.130  Sum_probs=195.8

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      ..+.+.|..+.|+         +..|++|..+| ++|||++ .+++...+..|.++|.++.+.+             .  
T Consensus       156 ~~h~~~v~~~~~~---------~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~-------------~--  210 (445)
T 2ovr_B          156 VGHTGGVWSSQMR---------DNIIISGSTDRTLKVWNAE-TGECIHTLYGHTSTVRCMHLHE-------------K--  210 (445)
T ss_dssp             CCCSSCEEEEEEE---------TTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEET-------------T--
T ss_pred             cCCCCCEEEEEec---------CCEEEEEeCCCeEEEEECC-cCcEEEEECCCCCcEEEEEecC-------------C--
Confidence            3456666666664         23677777766 9999995 5777788888999999998753             1  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEe-
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-  209 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~-  209 (765)
                      .|++.+.                                 +++|++||+.+++.+..+..+ ..|.++.+++++|+++. 
T Consensus       211 ~l~s~s~---------------------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~  257 (445)
T 2ovr_B          211 RVVSGSR---------------------------------DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY  257 (445)
T ss_dssp             EEEEEET---------------------------------TSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred             EEEEEeC---------------------------------CCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcC
Confidence            5554221                                 368999999999999999754 68999999988888766 


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCC
Q 004255          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG  289 (765)
Q Consensus       210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~  289 (765)
                      ++.|++||+.+++++.++..|..+             ...+++..++|+.++.+..+     ..|+..+.          
T Consensus       258 dg~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~~~~d~~i-----~i~d~~~~----------  309 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTLQGHTNR-------------VYSLQFDGIHVVSGSLDTSI-----RVWDVETG----------  309 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSC-------------EEEEEECSSEEEEEETTSCE-----EEEETTTC----------
T ss_pred             CCEEEEEECCCCcEeEEecCCCCc-------------eEEEEECCCEEEEEeCCCeE-----EEEECCCC----------
Confidence            557999999999988888766552             34566666888887765211     12322111          


Q ss_pred             CCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc--
Q 004255          290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--  367 (765)
Q Consensus       290 ~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a--  367 (765)
                        ..+                +++..+..      ......+      ....++.+..||.|+|||+.+++.+..+.+  
T Consensus       310 --~~~----------------~~~~~~~~------~v~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  359 (445)
T 2ovr_B          310 --NCI----------------HTLTGHQS------LTSGMEL------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPN  359 (445)
T ss_dssp             --CEE----------------EEECCCCS------CEEEEEE------ETTEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred             --CEE----------------EEEcCCcc------cEEEEEE------eCCEEEEEeCCCeEEEEECCCCcEEEEEccCC
Confidence              000                11111100      0000111      011244677899999999999999999986  


Q ss_pred             -CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEccCC
Q 004255          368 -HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSHYS  443 (765)
Q Consensus       368 -H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~---rG~~~a~I~slaFSpDg  443 (765)
                       |..+|.+++|+  +.+|++++.|| .|+|||+..       |          ..+..+.   .+.+...|++++|+||+
T Consensus       360 ~~~~~v~~~~~~--~~~l~s~~~dg-~v~iwd~~~-------~----------~~~~~~~~~~~~~~~~~v~~~~~s~~~  419 (445)
T 2ovr_B          360 KHQSAVTCLQFN--KNFVITSSDDG-TVKLWDLKT-------G----------EFIRNLVTLESGGSGGVVWRIRASNTK  419 (445)
T ss_dssp             SCSSCEEEEEEC--SSEEEEEETTS-EEEEEETTT-------C----------CEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred             CCCCCEEEEEEC--CCEEEEEeCCC-eEEEEECCC-------C----------ceeeeeeccccCCCCceEEEEEecCCE
Confidence             88999999996  68999999966 599999965       3          3455552   23345679999999999


Q ss_pred             CEEEEEeCCCc----EEEEeCCCC
Q 004255          444 QWIAIVSSKGT----CHVFVLSPF  463 (765)
Q Consensus       444 ~~Las~S~dgT----VhIwdl~~~  463 (765)
                      .+||+++.||+    ++|||++..
T Consensus       420 ~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          420 LVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEEcccCCCCccEEEEEECCCC
Confidence            99999999998    999999763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.87  E-value=9.4e-20  Score=201.67  Aligned_cols=257  Identities=16%  Similarity=0.200  Sum_probs=175.9

Q ss_pred             CCCCCc-EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           53 EDLKDQ-VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        53 ~~~~~~-v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      .++.+. +.++.||.         +.|++|+.+| ++|||+. .+++...+..|.++|.++++.|+            . 
T Consensus       118 ~~h~~~v~~~~~~~~---------~~l~sgs~dg~i~vwd~~-~~~~~~~~~~h~~~V~~l~~~~~------------~-  174 (464)
T 3v7d_B          118 RGHMTSVITCLQFED---------NYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHG------------G-  174 (464)
T ss_dssp             ECCSSSCEEEEEEET---------TEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECST------------T-
T ss_pred             cCCCCCcEEEEEECC---------CEEEEEcCCCcEEEEECC-CCcEEEEEeCCCcCEEEEEEcCC------------C-
Confidence            455555 46666643         3777777776 9999995 57788888899999999999863            1 


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC----CeE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP----RIV  205 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~----~~L  205 (765)
                       +|++.+.                                 +++|++||+++++++..+.. .+.|.++++++    ++|
T Consensus       175 -~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l  220 (464)
T 3v7d_B          175 -ILVSGST---------------------------------DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI  220 (464)
T ss_dssp             -EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEE
T ss_pred             -EEEEEeC---------------------------------CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEE
Confidence             5554221                                 36899999999999999984 57999998873    566


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (765)
Q Consensus       206 aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~  284 (765)
                      +++. ++.|++||+.+.+..........              ...+...+      ...+..                  
T Consensus       221 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~------~~~~~~------------------  262 (464)
T 3v7d_B          221 VTGSRDNTLHVWKLPKESSVPDHGEEHD--------------YPLVFHTP------EENPYF------------------  262 (464)
T ss_dssp             EEEETTSCEEEEECCCCCCC------CC--------------SSEEESCG------GGCTTE------------------
T ss_pred             EEEcCCCcEEEeeCCCCcccccccccCC--------------cceEeecc------CCCeEE------------------
Confidence            6655 56899999998765443321110              00000000      000000                  


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~  364 (765)
                               +                .++.++...      ...+  +++    +..++.+..||.|++||+.+++.+..
T Consensus       263 ---------~----------------~~~~~~~~~------v~~~--~~~----~~~l~~~~~d~~i~vwd~~~~~~~~~  305 (464)
T 3v7d_B          263 ---------V----------------GVLRGHMAS------VRTV--SGH----GNIVVSGSYDNTLIVWDVAQMKCLYI  305 (464)
T ss_dssp             ---------E----------------EEECCCSSC------EEEE--EEE----TTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ---------E----------------EEccCccce------EEEE--cCC----CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence                     0                000000000      0000  000    01234567899999999999999999


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 004255          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (765)
Q Consensus       365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (765)
                      +.+|..+|.+++|+|+|++|++++.||+ |+|||+..       +          ..+..+. + +...|.+++|+  ++
T Consensus       306 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~~--~~  363 (464)
T 3v7d_B          306 LSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLEN-------G----------ELMYTLQ-G-HTALVGLLRLS--DK  363 (464)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEEEEC--SS
T ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCC-------C----------cEEEEEe-C-CCCcEEEEEEc--CC
Confidence            9999999999999999999999999775 99999965       3          4666664 4 34579999998  58


Q ss_pred             EEEEEeCCCcEEEEeCCCC
Q 004255          445 WIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       445 ~Las~S~dgTVhIwdl~~~  463 (765)
                      +|++++.||+|++||+...
T Consensus       364 ~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          364 FLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             EEEEEETTSEEEEEETTTC
T ss_pred             EEEEEeCCCcEEEEECCCC
Confidence            9999999999999999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.87  E-value=1.2e-20  Score=199.02  Aligned_cols=267  Identities=14%  Similarity=0.127  Sum_probs=173.9

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL  133 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLL  133 (765)
                      +++.|..+.|..    +...++.|++|..+| ++|||+.........+..|.++|..+.+.|.-.       |.....+|
T Consensus        64 ~~~~v~~~~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~s~~~~~l  132 (357)
T 3i2n_A           64 KAKPIKCGTFGA----TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG-------IGEGAPEI  132 (357)
T ss_dssp             ESSCEEEEECTT----CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGG-------CC-CCCEE
T ss_pred             ccCcEEEEEEcC----CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccc-------cCCCccEE
Confidence            344555555543    111246788887766 999999654436778889999999998875211       33444577


Q ss_pred             EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-EEEEEeCC-----CCEEEEE----ecC-
Q 004255          134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-YEHVLRFR-----SSVCMVR----CSP-  202 (765)
Q Consensus       134 avv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~-~v~tL~~~-----s~V~sV~----~s~-  202 (765)
                      ++.+.                                 +++|++||+++++ .+..+..+     ..|.++.    +++ 
T Consensus       133 ~~~~~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  179 (357)
T 3i2n_A          133 VTGSR---------------------------------DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE  179 (357)
T ss_dssp             EEEET---------------------------------TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-C
T ss_pred             EEEeC---------------------------------CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCC
Confidence            65321                                 3689999999987 77777642     2788888    443 


Q ss_pred             -CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCC
Q 004255          203 -RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS  280 (765)
Q Consensus       203 -~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~  280 (765)
                       ++|+++.. +.|++||+.+++.... ..+..+             ...++++|.    ..+.                 
T Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~-------------v~~~~~~~~----~~~~-----------------  224 (357)
T 3i2n_A          180 ERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG-------------VCSLEFDRK----DISM-----------------  224 (357)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEE-EECSSC-------------EEEEEESCS----SSSC-----------------
T ss_pred             CCEEEEEccCCeEEEEECccCceeee-cCCCCc-------------eEEEEcCCC----CCCC-----------------
Confidence             67777665 6899999999876433 223321             123333220    0000                 


Q ss_pred             CCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 004255          281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA  360 (765)
Q Consensus       281 ~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~  360 (765)
                                .                                                 .++.+..+|.|+|||+.+++
T Consensus       225 ----------~-------------------------------------------------~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          225 ----------N-------------------------------------------------KLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             ----------C-------------------------------------------------EEEEEESTTEEEEEEEEEEE
T ss_pred             ----------C-------------------------------------------------EEEEECCCCeEEEEeCcCCC
Confidence                      0                                                 01134568899999998876


Q ss_pred             EEEEec-----cCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCccc---CCCCCCccccCCcceEEEEEeccccc
Q 004255          361 IISQFK-----AHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMR---SGSGNHKYDWNSSHVHLYKLHRGITS  431 (765)
Q Consensus       361 ~i~~~~-----aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~---~~sG~~~~~~~~s~~~l~~l~rG~~~  431 (765)
                      .+..+.     +|..+|.+++|+|+|. +|++++.|| .|+|||+......   ...|. ..........+..+. + +.
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-~-~~  321 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG-GLHLWKYEYPIQRSKKDSEGI-EMGVAGSVSLLQNVT-L-ST  321 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEEEECCSCC--CCTTSC-CCCCCCEEEEEEEEE-C-CS
T ss_pred             cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-cEEEeecCCCcccccccCCCC-ccccccccceeeccc-c-CC
Confidence            554444     9999999999999999 899999966 5999998642100   00000 000001123455554 3 34


Q ss_pred             ccEEEEEEccCCCEEE-EEeCCCcEEEEeCCCC
Q 004255          432 ATIQDICFSHYSQWIA-IVSSKGTCHVFVLSPF  463 (765)
Q Consensus       432 a~I~slaFSpDg~~La-s~S~dgTVhIwdl~~~  463 (765)
                      ..|++++|+||+++|+ +++.||+|+||++...
T Consensus       322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            5799999999999998 8999999999999764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.87  E-value=7.9e-20  Score=227.20  Aligned_cols=285  Identities=15%  Similarity=0.101  Sum_probs=204.8

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      .++++.|..+.|..       +++.|++|..+| ++|||+. +++....+..|.++|.++++.|+             ..
T Consensus       612 ~~h~~~v~~~~~s~-------~~~~l~s~~~d~~i~vw~~~-~~~~~~~~~~h~~~v~~~~~s~~-------------~~  670 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQ-------DGQRIASCGADKTLQVFKAE-TGEKLLDIKAHEDEVLCCAFSSD-------------DS  670 (1249)
T ss_dssp             CCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTT-------------SS
T ss_pred             ecccccEEEEEECC-------CCCEEEEEeCCCeEEEEECC-CCCEEEEeccCCCCEEEEEEecC-------------CC
Confidence            45778888888865       366888888776 9999995 56677788899999999999975             23


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC----CeEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP----RIVA  206 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~----~~La  206 (765)
                      +||+.+.                                 +++|++||+.+++.+.++..+ ..|.++++++    .+|+
T Consensus       671 ~l~s~~~---------------------------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  717 (1249)
T 3sfz_A          671 YIATCSA---------------------------------DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA  717 (1249)
T ss_dssp             EEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred             EEEEEeC---------------------------------CCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEE
Confidence            6665321                                 368999999999999999865 6899999976    3666


Q ss_pred             EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCC
Q 004255          207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (765)
Q Consensus       207 V~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s  283 (765)
                      ++. ++.|++||+.++++..++..|..+             ...++++|  ++|++++.+..+     ..|+..+...  
T Consensus       718 sg~~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~~~~sp~~~~l~s~s~dg~v-----~vwd~~~~~~--  777 (1249)
T 3sfz_A          718 TGSNDFFLKLWDLNQKECRNTMFGHTNS-------------VNHCRFSPDDELLASCSADGTL-----RLWDVRSANE--  777 (1249)
T ss_dssp             EEETTSCEEEEETTSSSEEEEECCCSSC-------------EEEEEECSSTTEEEEEESSSEE-----EEEEGGGTEE--
T ss_pred             EEeCCCeEEEEECCCcchhheecCCCCC-------------EEEEEEecCCCEEEEEECCCeE-----EEEeCCCCcc--
Confidence            655 457999999999999888877653             35688888  788888765321     1222211100  


Q ss_pred             CCcCCCCCcceeeehhhhhhhhhcccceeec--ccc-cccCC----CCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLS--KYC-QELLP----DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF  356 (765)
Q Consensus       284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls--~~~-~~~~p----~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl  356 (765)
                                .                +++.  .+. ....+    ........++++++..    +. ..+|.+.+||+
T Consensus       778 ----------~----------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l----~~-~~~~~v~~~d~  826 (1249)
T 3sfz_A          778 ----------R----------------KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI----IV-AAKNKVLLFDI  826 (1249)
T ss_dssp             ----------E----------------EEEECCCCC--------CCCCCBCCCCBCTTSSEE----EE-EETTEEEEEET
T ss_pred             ----------c----------------ceecccccccccCCccccccceEEEEEECCCCCEE----EE-EcCCcEEEEEe
Confidence                      0                0000  000 00000    0011223334433322    12 23789999999


Q ss_pred             CCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEE
Q 004255          357 VTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQ  435 (765)
Q Consensus       357 ~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~  435 (765)
                      .++..+..+. +|..+|.+++|+|+|.+|++++.+|. |++||+.+       +          ..+..+. + +...|.
T Consensus       827 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~-------~----------~~~~~~~-~-h~~~v~  886 (1249)
T 3sfz_A          827 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC-VELWNIDS-------R----------LKVADCR-G-HLSWVH  886 (1249)
T ss_dssp             TTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEE
T ss_pred             cCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCC-------C----------ceeeecC-C-CccceE
Confidence            9999888876 89999999999999999999999775 99999965       3          4555554 4 345799


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          436 DICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       436 slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      +++|+|||++|++++.||+|++|++..
T Consensus       887 ~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          887 GVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            999999999999999999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.87  E-value=6.1e-21  Score=209.54  Aligned_cols=252  Identities=13%  Similarity=0.205  Sum_probs=176.0

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC--Cc-ceEeee-eccCCEEEEEEecCCCCCCCCCCcc
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA--SN-FNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~--g~-~~ells-~~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      +.|.+.|..+.|..-      .++.|++|..+| ++|||+...  +. ....+. .|.++|.+|++.|+           
T Consensus        60 ~~h~~~V~~~~~s~~------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------  122 (437)
T 3gre_A           60 ENEPNSITSSAVSPG------ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPN-----------  122 (437)
T ss_dssp             TTTTSCEEEEEEECS------SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTT-----------
T ss_pred             cCCCCceEEEEECCC------CCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCC-----------
Confidence            667889999998651      256888888877 999999641  21 211222 58899999999974           


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC---CCeEEEEEeC-------------
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ---SHCYEHVLRF-------------  191 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlk---tg~~v~tL~~-------------  191 (765)
                        ..+|++.+.                                 +++|++||+.   +++.+..+..             
T Consensus       123 --~~~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  167 (437)
T 3gre_A          123 --FDAFAVSSK---------------------------------DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK  167 (437)
T ss_dssp             --SSEEEEEET---------------------------------TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred             --CCEEEEEeC---------------------------------CCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence              236665321                                 3689999994   6665554432             


Q ss_pred             CCCEEEEEe--c--CCeEEEEe-CCeEEEEECCCCceeEEEEe--cCCcccCCCCccccccccceeEEcc--ceEEEecC
Q 004255          192 RSSVCMVRC--S--PRIVAVGL-ATQIYCFDALTLENKFSVLT--YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN  262 (765)
Q Consensus       192 ~s~V~sV~~--s--~~~LaV~~-~~~I~iwD~~t~~~l~tl~t--~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~  262 (765)
                      ...+.++.+  +  .++|+++. ++.|++||+.+++++.++..  |..+             ...++++|  ++|     
T Consensus       168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-------------v~~~~~s~~~~~l-----  229 (437)
T 3gre_A          168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA-------------VSSICIDEECCVL-----  229 (437)
T ss_dssp             CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC-------------EEEEEECTTSCEE-----
T ss_pred             ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc-------------eEEEEECCCCCEE-----
Confidence            234555552  2  35676655 56899999999999888876  3321             23344433  111     


Q ss_pred             CceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccc
Q 004255          263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG  342 (765)
Q Consensus       263 ~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~  342 (765)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (437)
T 3gre_A          230 --------------------------------------------------------------------------------  229 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCeEEEEECCCCcEEEEec-cCCCCeEEE----EECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255          343 ADMDNAGIVVVKDFVTRAIISQFK-AHTSPISAL----CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaL----aFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~  417 (765)
                      +.+..||.|+|||+.+++.+..+. +|..+|.++    +|+|+|.+|++++.|| .|+|||+..       +        
T Consensus       230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~~-------~--------  293 (437)
T 3gre_A          230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-FLTIWNFVK-------G--------  293 (437)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE-EEEEEETTT-------T--------
T ss_pred             EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC-cEEEEEcCC-------C--------
Confidence            134568899999999999999987 888899999    5556788999999966 599999965       2        


Q ss_pred             cceEEEEEec-----------------------c-cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          418 SHVHLYKLHR-----------------------G-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       418 s~~~l~~l~r-----------------------G-~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                        ..+..+..                       | .+...|++++|+ ++++|++++.|++|+|||+........+..|.
T Consensus       294 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  370 (437)
T 3gre_A          294 --HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS  370 (437)
T ss_dssp             --EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred             --cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence              23333321                       1 133468999999 88999999999999999998766555566654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.87  E-value=4.8e-21  Score=207.22  Aligned_cols=250  Identities=11%  Similarity=0.111  Sum_probs=179.1

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~---~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      +.+.|..+.|..       .++.|++|..+| ++|||+..   .......+..|.++|.++++.|+.            .
T Consensus        66 ~~~~v~~~~~s~-------~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~  126 (416)
T 2pm9_A           66 VDSKFNDLDWSH-------NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ------------D  126 (416)
T ss_dssp             CSSCEEEEEECS-------SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS------------T
T ss_pred             cCCceEEEEECC-------CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC------------C
Confidence            566788888844       356788887765 99999965   134667788899999999998741            2


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe------EEEEE----eCCCCEEEEEe
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC------YEHVL----RFRSSVCMVRC  200 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~------~v~tL----~~~s~V~sV~~  200 (765)
                      .+|++ ++                                .+++|++||+.+++      ....+    .+...|.++++
T Consensus       127 ~~l~s-~~--------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  173 (416)
T 2pm9_A          127 NVLAS-GG--------------------------------NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW  173 (416)
T ss_dssp             TBEEE-EC--------------------------------SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred             CEEEE-Ec--------------------------------CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence            25554 22                                13689999999887      33333    24468999999


Q ss_pred             cC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCcccc
Q 004255          201 SP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLS  273 (765)
Q Consensus       201 s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s  273 (765)
                      ++   ++|+++. ++.|++||+.+++.+..+..+....       +.......++++|   .+|+               
T Consensus       174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~---------------  231 (416)
T 2pm9_A          174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS-------GIKQQLSVVEWHPKNSTRVA---------------  231 (416)
T ss_dssp             CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS-------CCCCCEEEEEECSSCTTEEE---------------
T ss_pred             CCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc-------ccCCceEEEEECCCCCCEEE---------------
Confidence            87   4677765 4579999999998877776432100       0000122334332   1111               


Q ss_pred             CCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCC---e
Q 004255          274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG---I  350 (765)
Q Consensus       274 ~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG---~  350 (765)
                                                                                            .+..+|   .
T Consensus       232 ----------------------------------------------------------------------~~~~d~~~~~  241 (416)
T 2pm9_A          232 ----------------------------------------------------------------------TATGSDNDPS  241 (416)
T ss_dssp             ----------------------------------------------------------------------EEECCSSSCC
T ss_pred             ----------------------------------------------------------------------EEECCCCCce
Confidence                                                                                  122344   8


Q ss_pred             EEEEECCCC-cEEEEec-cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          351 VVVKDFVTR-AIISQFK-AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       351 V~IwDl~s~-~~i~~~~-aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      |+|||+.++ +.+..+. +|..+|.+++|+| +|.+|++++.|| .|+|||+..       +          ..+..+. 
T Consensus       242 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-~v~~wd~~~-------~----------~~~~~~~-  302 (416)
T 2pm9_A          242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-TVLLWNPES-------A----------EQLSQFP-  302 (416)
T ss_dssp             CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS-EEEEECSSS-------C----------CEEEEEE-
T ss_pred             EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC-CEEEeeCCC-------C----------ccceeec-
Confidence            999999986 6777888 9999999999999 999999999966 599999865       3          4666665 


Q ss_pred             ccccccEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCcc
Q 004255          428 GITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSG  468 (765)
Q Consensus       428 G~~~a~I~slaFSpDg-~~Las~S~dgTVhIwdl~~~gg~~~  468 (765)
                      + +...|.+++|+||+ ++|++++.|++|+||++........
T Consensus       303 ~-~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          303 A-RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             C-SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred             C-CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence            3 33569999999999 8999999999999999987665443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1e-21  Score=212.44  Aligned_cols=262  Identities=13%  Similarity=0.068  Sum_probs=171.9

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------cceE--eeeeccCCEEEEEEecCCCCCCCCC
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNE--LVSKRDGPVSFLQMQPFPVKDDGCE  124 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g------~~~e--lls~~dg~V~~v~~lP~p~~~~~~d  124 (765)
                      .+++.|..+.|...      .+++|++|..+| ++|||+....      ....  .+..|.++|..+++.|+.       
T Consensus       111 ~h~~~v~~~~~~~~------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------  177 (416)
T 2pm9_A          111 NHSSSVKTVKFNAK------QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL-------  177 (416)
T ss_dssp             CSSSCCCEEEECSS------STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC-------
T ss_pred             CCccceEEEEEcCC------CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC-------
Confidence            35555666666431      156788887766 9999996533      1222  235678899999998741       


Q ss_pred             CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-------CCCEEE
Q 004255          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-------RSSVCM  197 (765)
Q Consensus       125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-------~s~V~s  197 (765)
                           ..+|++ ++                                .+++|++||+++++.+..+..       ...|.+
T Consensus       178 -----~~~l~~-~~--------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          178 -----AHVFAS-AG--------------------------------SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             -----TTEEEE-ES--------------------------------SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred             -----CcEEEE-Ec--------------------------------CCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence                 235554 22                                136899999999999999987       468999


Q ss_pred             EEecC---CeEEEEeCC----eEEEEECCCC-ceeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecC
Q 004255          198 VRCSP---RIVAVGLAT----QIYCFDALTL-ENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSN  268 (765)
Q Consensus       198 V~~s~---~~LaV~~~~----~I~iwD~~t~-~~l~tl~-t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~  268 (765)
                      +++++   .+|+++..+    .|++||+.++ +.+..+. .|..+             ...++++|       .+     
T Consensus       220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~-------------v~~~~~s~-------~~-----  274 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG-------------ILSLDWCH-------QD-----  274 (416)
T ss_dssp             EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC-------------EEEEEECS-------SC-----
T ss_pred             EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc-------------eeEEEeCC-------CC-----
Confidence            99997   367776654    8999999986 3334333 33221             12233321       00     


Q ss_pred             CccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCC
Q 004255          269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA  348 (765)
Q Consensus       269 ~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~d  348 (765)
                                            +.                                                .++.+..|
T Consensus       275 ----------------------~~------------------------------------------------~l~s~~~d  284 (416)
T 2pm9_A          275 ----------------------EH------------------------------------------------LLLSSGRD  284 (416)
T ss_dssp             ----------------------SS------------------------------------------------CEEEEESS
T ss_pred             ----------------------CC------------------------------------------------eEEEEeCC
Confidence                                  00                                                01234568


Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE---
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK---  424 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~---  424 (765)
                      |.|+|||+.+++.+..+.+|..+|.+++|+|+| .+|++++.|| .|+|||+......................++.   
T Consensus       285 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (416)
T 2pm9_A          285 NTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN-KIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS  363 (416)
T ss_dssp             SEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS-EEEEEESCCCCCSSCC-------------------
T ss_pred             CCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC-cEEEEEccCCCCCcccccccccccCCccccccccc
Confidence            999999999999999999999999999999999 8999999966 59999996521100000000000000000000   


Q ss_pred             --------------EecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          425 --------------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       425 --------------l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                                    ..+. +...+.+++|||||++||+++.|++|+||++.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          364 REESKEKPSVFHLQAPTW-YGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ---CCSCCCSSCCCCCST-TCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             ccccccccccccccCCcc-ccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                          0000 2335778999999999999999999999999763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.87  E-value=4e-20  Score=196.51  Aligned_cols=239  Identities=11%  Similarity=0.114  Sum_probs=173.3

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~--~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      +.+.|..+.|..       .++.|++|..+| ++|||++ .++  ....+..|.++|..+++.|+.             .
T Consensus         7 ~~~~i~~~~~s~-------~~~~l~~~~~d~~v~i~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~   65 (372)
T 1k8k_C            7 LVEPISCHAWNK-------DRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDS-------------N   65 (372)
T ss_dssp             CSSCCCEEEECT-------TSSEEEEECSSSEEEEEEEE-TTEEEEEEEEECCSSCEEEEEEETTT-------------T
T ss_pred             cCCCeEEEEECC-------CCCEEEEEeCCCEEEEEeCC-CCcEEeeeeecCCCCcccEEEEeCCC-------------C
Confidence            566777788864       356888886665 9999996 454  666778899999999999742             3


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCCEEEEEecC--CeEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP--RIVA  206 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~---~~s~V~sV~~s~--~~La  206 (765)
                      +|++.+.                                 +++|++||+.+++....+.   +...|.++++++  ++|+
T Consensus        66 ~l~~~~~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  112 (372)
T 1k8k_C           66 RIVTCGT---------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA  112 (372)
T ss_dssp             EEEEEET---------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcC---------------------------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEE
Confidence            6655321                                 3589999999998776664   456899999987  6777


Q ss_pred             EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCC
Q 004255          207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (765)
Q Consensus       207 V~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s  283 (765)
                      ++. ++.|++||+.+.+....+.....+.         ......++++|  ++|+                         
T Consensus       113 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~l~-------------------------  158 (372)
T 1k8k_C          113 VGSGSRVISICYFEQENDWWVCKHIKKPI---------RSTVLSLDWHPNSVLLA-------------------------  158 (372)
T ss_dssp             EEETTSSEEEEEEETTTTEEEEEEECTTC---------CSCEEEEEECTTSSEEE-------------------------
T ss_pred             EEeCCCEEEEEEecCCCcceeeeeeeccc---------CCCeeEEEEcCCCCEEE-------------------------
Confidence            766 4679999998876433222111100         00112334433  2222                         


Q ss_pred             CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC-------
Q 004255          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF-------  356 (765)
Q Consensus       284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl-------  356 (765)
                                                                                  .+..||.|+|||+       
T Consensus       159 ------------------------------------------------------------~~~~dg~i~~~d~~~~~~~~  178 (372)
T 1k8k_C          159 ------------------------------------------------------------AGSCDFKCRIFSAYIKEVEE  178 (372)
T ss_dssp             ------------------------------------------------------------EEETTSCEEEEECCCTTTSC
T ss_pred             ------------------------------------------------------------EEcCCCCEEEEEcccccccc
Confidence                                                                        2345677788884       


Q ss_pred             -----------CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          357 -----------VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       357 -----------~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                                 ..++.+..+.+|..+|.+++|+|+|.+|++++.|| .|++||+..       +          ..+..+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~-------~----------~~~~~~  240 (372)
T 1k8k_C          179 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADK-------K----------MAVATL  240 (372)
T ss_dssp             CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-EEEEEEGGG-------T----------TEEEEE
T ss_pred             cccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC-EEEEEECCC-------C----------ceeEEE
Confidence                       46788899999999999999999999999999966 599999965       3          356666


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      . + +...|.+++|+||+++|+++ .|++|+||++..
T Consensus       241 ~-~-~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          241 A-S-ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             E-C-SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             c-c-CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            5 2 34579999999999999888 899999999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.87  E-value=8.8e-20  Score=201.64  Aligned_cols=231  Identities=16%  Similarity=0.229  Sum_probs=174.3

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      .++.+.|..+.||         ++.|++|..+| ++|||+. .+++...+..|.++|.++++.             +  .
T Consensus       130 ~~~~~~v~~~~~d---------~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~-------------~--~  184 (435)
T 1p22_A          130 SETSKGVYCLQYD---------DQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQYD-------------E--R  184 (435)
T ss_dssp             CSSCCCEEEEECC---------SSEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEECC-------------S--S
T ss_pred             cCCCCcEEEEEEC---------CCEEEEEeCCCeEEEEeCC-CCeEEEEEcCCCCcEEEEEEC-------------C--C
Confidence            3456678887774         24677777665 9999995 577888899999999998863             1  2


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEe-
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-  209 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~-  209 (765)
                      +|++.+.                                 +++|++||+.+++.+.++..+ ..|.+++++++.|+++. 
T Consensus       185 ~l~sg~~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~  231 (435)
T 1p22_A          185 VIITGSS---------------------------------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK  231 (435)
T ss_dssp             EEEEEET---------------------------------TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred             EEEEEcC---------------------------------CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeC
Confidence            6654221                                 368999999999999999865 68999999998888766 


Q ss_pred             CCeEEEEECCCCceeE---EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          210 ATQIYCFDALTLENKF---SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       210 ~~~I~iwD~~t~~~l~---tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                      ++.|++||+.+++...   .+..|..+             ...+++..++                              
T Consensus       232 dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~------------------------------  268 (435)
T 1p22_A          232 DRSIAVWDMASPTDITLRRVLVGHRAA-------------VNVVDFDDKY------------------------------  268 (435)
T ss_dssp             TSCEEEEECSSSSCCEEEEEECCCSSC-------------EEEEEEETTE------------------------------
T ss_pred             CCcEEEEeCCCCCCceeeeEecCCCCc-------------EEEEEeCCCE------------------------------
Confidence            4679999999877552   22233221             1112221111                              


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~  366 (765)
                                                                             ++.++.||.|+|||+.+++.+..+.
T Consensus       269 -------------------------------------------------------l~s~~~dg~i~vwd~~~~~~~~~~~  293 (435)
T 1p22_A          269 -------------------------------------------------------IVSASGDRTIKVWNTSTCEFVRTLN  293 (435)
T ss_dssp             -------------------------------------------------------EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             -------------------------------------------------------EEEEeCCCeEEEEECCcCcEEEEEc
Confidence                                                                   1234568999999999999999999


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (765)
Q Consensus       367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (765)
                      +|..+|.+++|  ++.+|++++.||+ |+|||+..       +          ..+..+. + +...|.+++|  |+++|
T Consensus       294 ~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~--~~~~l  349 (435)
T 1p22_A          294 GHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIEC-------G----------ACLRVLE-G-HEELVRCIRF--DNKRI  349 (435)
T ss_dssp             CCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEC--CSSEE
T ss_pred             CCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCC-------C----------CEEEEEe-C-CcCcEEEEEe--cCCEE
Confidence            99999999999  5789999999775 99999965       3          4666664 3 3457999999  88999


Q ss_pred             EEEeCCCcEEEEeCCCC
Q 004255          447 AIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       447 as~S~dgTVhIwdl~~~  463 (765)
                      ++++.||+|+|||+...
T Consensus       350 ~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          350 VSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             EEEETTSCEEEEEHHHH
T ss_pred             EEEeCCCcEEEEECCCC
Confidence            99999999999999653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.87  E-value=1.6e-20  Score=204.08  Aligned_cols=226  Identities=10%  Similarity=0.087  Sum_probs=162.4

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      ++.|++|..+| +++||+. .++....+..+ ..+....+.|+             ..+||+.+.               
T Consensus        68 g~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~-~~~~~~~~~~~-------------~~~l~~~~~---------------  117 (420)
T 3vl1_A           68 GSHLYKARLDGHDFLFNTI-IRDGSKMLKRA-DYTAVDTAKLQ-------------MRRFILGTT---------------  117 (420)
T ss_dssp             ETTEEEEEETTEEEEEECC-SEETTTTSCSC-CEEEEEEECSS-------------SCEEEEEET---------------
T ss_pred             CCeEEEEEcCCcEEEEEec-ccceeeEEecC-CceEEEEEecC-------------CCEEEEEEC---------------
Confidence            34566666655 9999995 34444444444 33444444442             236665221               


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~-~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                                        +++|++||+.+++.+..+. +...|.++++++  ++|+++. ++.|++||+.+++.+.++..
T Consensus       118 ------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  179 (420)
T 3vl1_A          118 ------------------EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG  179 (420)
T ss_dssp             ------------------TSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred             ------------------CCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence                              3689999999999988875 557999999987  5777765 56799999999998888877


Q ss_pred             cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255          230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (765)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~  307 (765)
                      |..+             ...++++|  ++|+                                                 
T Consensus       180 h~~~-------------v~~~~~~~~~~~l~-------------------------------------------------  197 (420)
T 3vl1_A          180 HRAT-------------VTDIAIIDRGRNVL-------------------------------------------------  197 (420)
T ss_dssp             CSSC-------------EEEEEEETTTTEEE-------------------------------------------------
T ss_pred             CCCc-------------EEEEEEcCCCCEEE-------------------------------------------------
Confidence            6652             23344433  1222                                                 


Q ss_pred             ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC---C---------------
Q 004255          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH---T---------------  369 (765)
Q Consensus       308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH---~---------------  369 (765)
                                                          .+..||.|+|||+.+++.+..+..|   .               
T Consensus       198 ------------------------------------s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  241 (420)
T 3vl1_A          198 ------------------------------------SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ  241 (420)
T ss_dssp             ------------------------------------EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred             ------------------------------------EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence                                                2345788999999998888888753   3               


Q ss_pred             ------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255          370 ------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (765)
Q Consensus       370 ------~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (765)
                            .+|.+++|+|+|++|++++.||. |+|||+..       +          ..+..+..+ +...|.+++|+||+
T Consensus       242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~-------~----------~~~~~~~~~-~~~~v~~~~~~~~~  302 (420)
T 3vl1_A          242 LHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFS-------K----------EQTIQLPSK-FTCSCNSLTVDGNN  302 (420)
T ss_dssp             CGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTT-------C----------CEEEEECCT-TSSCEEEEEECSSC
T ss_pred             eeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCC-------C----------ceeEEcccc-cCCCceeEEEeCCC
Confidence                  45555666899999999999776 99999965       2          355566543 34579999999999


Q ss_pred             C-EEEEEeCCCcEEEEeCCCCCC
Q 004255          444 Q-WIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       444 ~-~Las~S~dgTVhIwdl~~~gg  465 (765)
                      + +|++++.||+|+|||+.....
T Consensus       303 ~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          303 ANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             TTEEEEEETTSEEEEEETTCTTS
T ss_pred             CCEEEEEeCCCeEEEEEcCCCcC
Confidence            9 999999999999999987544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.86  E-value=1.8e-20  Score=205.13  Aligned_cols=259  Identities=10%  Similarity=0.131  Sum_probs=169.8

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc----------ceEeeeecc------------CCEEEE
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN----------FNELVSKRD------------GPVSFL  111 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~----------~~ells~~d------------g~V~~v  111 (765)
                      +.+.|..+.|+.       .++.|++|..+| ++|||++....          +...+..|.            ++|..|
T Consensus        27 ~~~~V~~v~~s~-------~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l   99 (447)
T 3dw8_B           27 EADIISTVEFNH-------SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI   99 (447)
T ss_dssp             GGGSEEEEEECS-------SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred             ccCcEEEEEECC-------CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence            567899999976       367899998877 99999964321          456677887            889999


Q ss_pred             EEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE-----
Q 004255          112 QMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE-----  186 (765)
Q Consensus       112 ~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v-----  186 (765)
                      ++.|+.           +..+|++.+.                                 +++|++||+.+++..     
T Consensus       100 ~~~~~~-----------~~~~l~s~s~---------------------------------d~~i~iw~~~~~~~~~~~~~  135 (447)
T 3dw8_B          100 RWLPQK-----------NAAQFLLSTN---------------------------------DKTIKLWKISERDKRPEGYN  135 (447)
T ss_dssp             EECCCC-----------SSSEEEEEEC---------------------------------SSCEEEEEEEEEEEEEECCS
T ss_pred             EEcCCC-----------CcceEEEeCC---------------------------------CCeEEEEecccccCCcceec
Confidence            999752           1135655322                                 368999999875542     


Q ss_pred             ----------------------------------EEE-e-CCCCEEEEEecC--CeEEEEeCCeEEEEECCCCc-eeEEE
Q 004255          187 ----------------------------------HVL-R-FRSSVCMVRCSP--RIVAVGLATQIYCFDALTLE-NKFSV  227 (765)
Q Consensus       187 ----------------------------------~tL-~-~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~-~l~tl  227 (765)
                                                        ..+ . +...|.++++++  ++|+++.++.|++||+.+.. .+..+
T Consensus       136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~  215 (447)
T 3dw8_B          136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIV  215 (447)
T ss_dssp             CC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEE
T ss_pred             ccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeee
Confidence                                              122 2 346899999987  68888877789999998433 33332


Q ss_pred             EecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255          228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (765)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~  307 (765)
                      ...+.. ..     .-......++++|       +                           +..               
T Consensus       216 ~~~~~~-~~-----~~~~~v~~~~~~p-------~---------------------------~~~---------------  240 (447)
T 3dw8_B          216 DIKPAN-ME-----ELTEVITAAEFHP-------N---------------------------SCN---------------  240 (447)
T ss_dssp             ECCCSS-GG-----GCCCCEEEEEECS-------S---------------------------CTT---------------
T ss_pred             eccccc-cc-----ccCcceEEEEECC-------C---------------------------CCc---------------
Confidence            211110 00     0000011122211       0                           000               


Q ss_pred             ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE----EEEeccCCC------------C
Q 004255          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTS------------P  371 (765)
Q Consensus       308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~----i~~~~aH~~------------~  371 (765)
                                                       .++.+..||.|+|||+.+++.    +..+.+|..            +
T Consensus       241 ---------------------------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (447)
T 3dw8_B          241 ---------------------------------TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS  287 (447)
T ss_dssp             ---------------------------------EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred             ---------------------------------EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence                                             122455789999999999886    788988886            9


Q ss_pred             eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----------c---cEEEE
Q 004255          372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------A---TIQDI  437 (765)
Q Consensus       372 IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~-----------a---~I~sl  437 (765)
                      |.+++|+|+|++|++++. | .|+|||+...      +          ..+..+. ++..           .   .+.++
T Consensus       288 v~~~~~s~~g~~l~~~~~-~-~v~iwd~~~~------~----------~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~~~  348 (447)
T 3dw8_B          288 ISDVKFSHSGRYMMTRDY-L-SVKVWDLNME------N----------RPVETYQ-VHEYLRSKLCSLYENDCIFDKFEC  348 (447)
T ss_dssp             EEEEEECTTSSEEEEEES-S-EEEEEETTCC------S----------SCSCCEE-SCGGGTTTHHHHHHTSGGGCCCCE
T ss_pred             EEEEEECCCCCEEEEeeC-C-eEEEEeCCCC------c----------cccceee-ccccccccccccccccccccceEE
Confidence            999999999999999998 5 5999999641      1          1222332 2111           0   13459


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255          438 CFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       438 aFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h  472 (765)
                      +|+||+++|++++.||+|+|||+... ....+..|
T Consensus       349 ~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~  382 (447)
T 3dw8_B          349 CWNGSDSVVMTGSYNNFFRMFDRNTK-RDITLEAS  382 (447)
T ss_dssp             EECTTSSEEEEECSTTEEEEEETTTC-CEEEEECC
T ss_pred             EECCCCCEEEEeccCCEEEEEEcCCC-cceeeeec
Confidence            99999999999999999999999873 33344444

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.86  E-value=8.6e-20  Score=194.07  Aligned_cols=207  Identities=11%  Similarity=0.049  Sum_probs=155.0

Q ss_pred             ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (765)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~  176 (765)
                      +...|.+|.++|..|++.|.            ...+|+..+                                 .+++|+
T Consensus         9 l~~~l~gH~~~V~~l~~~~~------------~~~~l~s~s---------------------------------~D~~v~   43 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAG------------QPNLLLSAS---------------------------------RDKTLI   43 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSS------------CTTEEEEEE---------------------------------TTSEEE
T ss_pred             EEEEEccccceEEEEEccCC------------CccEEEEec---------------------------------CCccEE
Confidence            34567899999999999863            113665422                                 137999


Q ss_pred             EEECCC-----CeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255          177 FYSFQS-----HCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       177 lWdlkt-----g~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      +||+.+     +..+.+++.+ ..|.++++++  ++|+++. ++.|++||+.+++++.++..|..+             .
T Consensus        44 ~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~-------------v  110 (319)
T 3frx_A           44 SWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD-------------V  110 (319)
T ss_dssp             EEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------E
T ss_pred             EecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc-------------E
Confidence            999864     4457777755 5899999987  5777655 668999999999998888877652             2


Q ss_pred             ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (765)
Q Consensus       248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~  327 (765)
                      ..++++|       +.                           .                                    
T Consensus       111 ~~~~~~~-------~~---------------------------~------------------------------------  120 (319)
T 3frx_A          111 MSVDIDK-------KA---------------------------S------------------------------------  120 (319)
T ss_dssp             EEEEECT-------TS---------------------------C------------------------------------
T ss_pred             EEEEEcC-------CC---------------------------C------------------------------------
Confidence            2333322       10                           0                                    


Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC------CCEEEEEEcCCCEEEEEeCCC
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS------GTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd------G~lLATaS~dGt~IrVWdi~~  401 (765)
                                   .+++++.||+|+|||+. ++.+..+.+|...|.+++|+|.      +.+|++++.|++ |++||+..
T Consensus       121 -------------~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~  185 (319)
T 3frx_A          121 -------------MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM-VKAWNLNQ  185 (319)
T ss_dssp             -------------EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSC-EEEEETTT
T ss_pred             -------------EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCE-EEEEECCc
Confidence                         01234568999999996 5678889999999999999994      558999999765 99999964


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                             +          .....+. | +...|.+++|+|||++|++++.||+|+|||+.....
T Consensus       186 -------~----------~~~~~~~-~-h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~  230 (319)
T 3frx_A          186 -------F----------QIEADFI-G-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA  230 (319)
T ss_dssp             -------T----------EEEEEEC-C-CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred             -------c----------hhheeec-C-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence                   2          3444553 4 345799999999999999999999999999986543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.86  E-value=4.2e-20  Score=204.21  Aligned_cols=241  Identities=14%  Similarity=0.152  Sum_probs=174.0

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      .++.+.|..+.||         ++.|++|..+| ++|||+. .+++...+..|.+.|.++.+.+             .  
T Consensus       170 ~~h~~~v~~l~~~---------~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~-------------~--  224 (435)
T 1p22_A          170 TGHTGSVLCLQYD---------ERVIITGSSDSTVRVWDVN-TGEMLNTLIHHCEAVLHLRFNN-------------G--  224 (435)
T ss_dssp             CCCSSCEEEEECC---------SSEEEEEETTSCEEEEESS-SCCEEEEECCCCSCEEEEECCT-------------T--
T ss_pred             cCCCCcEEEEEEC---------CCEEEEEcCCCeEEEEECC-CCcEEEEEcCCCCcEEEEEEcC-------------C--
Confidence            3466677766662         35788888776 9999995 5778888888999999998753             2  


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEeC-CCCEEEEEecCCeEEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLRF-RSSVCMVRCSPRIVAV  207 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v---~tL~~-~s~V~sV~~s~~~LaV  207 (765)
                      +|++.+.                                 +++|++||+.+++.+   ..+.. ...|.++.+++++|++
T Consensus       225 ~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s  271 (435)
T 1p22_A          225 MMVTCSK---------------------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS  271 (435)
T ss_dssp             EEEEEET---------------------------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEE
T ss_pred             EEEEeeC---------------------------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEE
Confidence            5554221                                 368999999988765   44443 4689999999988888


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                      +. ++.|++||+.+++.+.++..|..+             ...+++..++|+                            
T Consensus       272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~----------------------------  310 (435)
T 1p22_A          272 ASGDRTIKVWNTSTCEFVRTLNGHKRG-------------IACLQYRDRLVV----------------------------  310 (435)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEEETTEEE----------------------------
T ss_pred             EeCCCeEEEEECCcCcEEEEEcCCCCc-------------EEEEEeCCCEEE----------------------------
Confidence            76 567999999999998888766542             112222111111                            


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK  366 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~  366 (765)
                                                                               .++.||.|+|||+.+++.+..+.
T Consensus       311 ---------------------------------------------------------~g~~dg~i~iwd~~~~~~~~~~~  333 (435)
T 1p22_A          311 ---------------------------------------------------------SGSSDNTIRLWDIECGACLRVLE  333 (435)
T ss_dssp             ---------------------------------------------------------EEETTSCEEEEETTTCCEEEEEC
T ss_pred             ---------------------------------------------------------EEeCCCeEEEEECCCCCEEEEEe
Confidence                                                                     23468899999999999999999


Q ss_pred             cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 004255          367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI  446 (765)
Q Consensus       367 aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L  446 (765)
                      +|..+|.+++|  +|.+|++++.||. |+|||+......   .     .......+..+. + +...|.+++|  |+++|
T Consensus       334 ~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~---~-----~~~~~~~~~~~~-~-h~~~v~~l~~--~~~~l  398 (435)
T 1p22_A          334 GHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDP---R-----APAGTLCLRTLV-E-HSGRVFRLQF--DEFQI  398 (435)
T ss_dssp             CCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTST---T-----SCTTTTEEEEEC-C-CSSCCCCEEE--CSSCE
T ss_pred             CCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCc---c-----ccccchheeecc-C-CCCCeEEEEe--CCCEE
Confidence            99999999999  7899999999775 999998541100   0     000012455553 3 3457999999  88999


Q ss_pred             EEEeCCCcEEEEeCCCCC
Q 004255          447 AIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       447 as~S~dgTVhIwdl~~~g  464 (765)
                      ++++.||+|+|||+....
T Consensus       399 ~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          399 VSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EECCSSSEEEEEC-----
T ss_pred             EEEeCCCEEEEEECCCCC
Confidence            999999999999998643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.3e-19  Score=195.08  Aligned_cols=288  Identities=11%  Similarity=0.075  Sum_probs=181.8

Q ss_pred             CcEEEEEEeeccCCCCCCCe-EEEEEecCc-EEEEEc----cCCCc------ceEeeee----------ccCCEEEEEEe
Q 004255           57 DQVTWAGFDRLEYGPSVFKQ-VLLLGYQNG-FQVLDV----EDASN------FNELVSK----------RDGPVSFLQMQ  114 (765)
Q Consensus        57 ~~v~w~~fd~l~~~~~~~~~-vL~~G~~~G-~qVWdv----~~~g~------~~ells~----------~dg~V~~v~~l  114 (765)
                      +.|..+.|..       .++ +|++|..+| ++|||+    .. ++      ....+..          |.++|.++++.
T Consensus        46 ~~v~~~~~s~-------~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  117 (425)
T 1r5m_A           46 DNIVSSTWNP-------LDESILAYGEKNSVARLARIVETDQE-GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS  117 (425)
T ss_dssp             SCCSEEEECS-------SCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred             CceEEEEECC-------CCCcEEEEecCCceEEEEEEecccCC-ccccccccccccccccccccccccCCCCceEEEEEc
Confidence            4455555543       345 888888766 999999    54 43      2333333          57799999999


Q ss_pred             cCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CC
Q 004255          115 PFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RS  193 (765)
Q Consensus       115 P~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s  193 (765)
                      |+             ..+|++.+.                                 +++|++|| .+++.+..+.. ..
T Consensus       118 ~~-------------~~~l~~~~~---------------------------------dg~i~i~~-~~~~~~~~~~~~~~  150 (425)
T 1r5m_A          118 HD-------------GNSIVTGVE---------------------------------NGELRLWN-KTGALLNVLNFHRA  150 (425)
T ss_dssp             TT-------------SSEEEEEET---------------------------------TSCEEEEE-TTSCEEEEECCCCS
T ss_pred             CC-------------CCEEEEEeC---------------------------------CCeEEEEe-CCCCeeeeccCCCc
Confidence            74             236665321                                 25899999 68888888875 46


Q ss_pred             CEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccC-C-CCccccccccceeEEcc-ceEEEecCCceec
Q 004255          194 SVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLA-G-QGAVGINVGYGPMAVGP-RWLAYASNTLLLS  267 (765)
Q Consensus       194 ~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~-~-~~~~~~~~~~~~~Alsp-r~LAyas~~~~~~  267 (765)
                      .|.++++++  ++|+++. ++.|++||+.+++.+..+..+..+... . ............+++++ ..++.++.+..+ 
T Consensus       151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i-  229 (425)
T 1r5m_A          151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAI-  229 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCE-
T ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeE-
Confidence            899999987  5666654 568999999999988877654332000 0 00000000023355555 344444433110 


Q ss_pred             CCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCC
Q 004255          268 NSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDN  347 (765)
Q Consensus       268 ~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~  347 (765)
                          ..|+..+..            .+                +++..+.      .....+.++++.+    .++.+..
T Consensus       230 ----~~~d~~~~~------------~~----------------~~~~~~~------~~i~~~~~~~~~~----~l~~~~~  267 (425)
T 1r5m_A          230 ----FVYQITEKT------------PT----------------GKLIGHH------GPISVLEFNDTNK----LLLSASD  267 (425)
T ss_dssp             ----EEEETTCSS------------CS----------------EEECCCS------SCEEEEEEETTTT----EEEEEET
T ss_pred             ----EEEEcCCCc------------ee----------------eeeccCC------CceEEEEECCCCC----EEEEEcC
Confidence                112211100            00                0111000      0001111222222    2346678


Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      +|.|+|||+.+++.+..+.+|..+|.+++|+|+| +|++++.+| .|+|||+..       +          ..+..+. 
T Consensus       268 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~-~i~i~d~~~-------~----------~~~~~~~-  327 (425)
T 1r5m_A          268 DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDG-SVRLWSLKQ-------N----------TLLALSI-  327 (425)
T ss_dssp             TSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTS-EEEEEETTT-------T----------EEEEEEE-
T ss_pred             CCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCC-cEEEEECCC-------C----------cEeEecc-
Confidence            9999999999999999999999999999999999 999999966 599999964       2          4555554 


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      + +...|.+++|+||+++|++++.||+|+||++...
T Consensus       328 ~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          328 V-DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             C-TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred             c-CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            2 3357999999999999999999999999999753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.86  E-value=4e-19  Score=196.36  Aligned_cols=259  Identities=14%  Similarity=0.128  Sum_probs=187.0

Q ss_pred             eEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255           76 QVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (765)
Q Consensus        76 ~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~  154 (765)
                      +.|++|..+| ++|||+. .+++...+..|.++|.++++.+               .+|++.+.                
T Consensus       130 ~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~---------------~~l~s~~~----------------  177 (445)
T 2ovr_B          130 NRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMRD---------------NIIISGST----------------  177 (445)
T ss_dssp             TEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEET---------------TEEEEEET----------------
T ss_pred             CEEEEEECCCcEEEEECC-CCcEEEEEcCCCCCEEEEEecC---------------CEEEEEeC----------------
Confidence            4677777776 9999995 5778888899999999998763               25654221                


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCC
Q 004255          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPV  232 (765)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~  232 (765)
                                       +++|++||+.+++.+.++..+ ..|.++.++++.|+++. ++.|++||+.+++.+.++..|..
T Consensus       178 -----------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~  240 (445)
T 2ovr_B          178 -----------------DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA  240 (445)
T ss_dssp             -----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred             -----------------CCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc
Confidence                             368999999999999999854 68999999998888766 56899999999999998887665


Q ss_pred             cccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccccee
Q 004255          233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT  312 (765)
Q Consensus       233 p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~kt  312 (765)
                      +             ...+++..++|+.++.+..+     ..|+..+.            ..                .++
T Consensus       241 ~-------------v~~~~~~~~~l~~~~~dg~i-----~iwd~~~~------------~~----------------~~~  274 (445)
T 2ovr_B          241 A-------------VRCVQYDGRRVVSGAYDFMV-----KVWDPETE------------TC----------------LHT  274 (445)
T ss_dssp             C-------------EEEEEECSSCEEEEETTSCE-----EEEEGGGT------------EE----------------EEE
T ss_pred             c-------------EEEEEECCCEEEEEcCCCEE-----EEEECCCC------------cE----------------eEE
Confidence            2             34566666888887765311     12221110            00                011


Q ss_pred             ecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 004255          313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN  392 (765)
Q Consensus       313 ls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt  392 (765)
                      +.++..      ....+.+      .+..++.+..||.|++||+.+++.+..+.+|...+.+++++  +.+|++++.||.
T Consensus       275 ~~~~~~------~v~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~  340 (445)
T 2ovr_B          275 LQGHTN------RVYSLQF------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADST  340 (445)
T ss_dssp             ECCCSS------CEEEEEE------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSC
T ss_pred             ecCCCC------ceEEEEE------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCe
Confidence            111110      0001111      11124567789999999999999999999999999998884  679999999775


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc-cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG-~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                       |+|||+..       +          ..+..+... .+...|.+++|+  +++|++++.||+|+|||+...
T Consensus       341 -i~vwd~~~-------~----------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          341 -VKIWDIKT-------G----------QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG  392 (445)
T ss_dssp             -EEEEETTT-------C----------CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred             -EEEEECCC-------C----------cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence             99999965       3          456666421 134579999995  689999999999999999763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=3e-20  Score=213.59  Aligned_cols=262  Identities=13%  Similarity=0.079  Sum_probs=170.0

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc----------ceEeeeeccCCEEEEEEecCCCCCCCCC
Q 004255           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN----------FNELVSKRDGPVSFLQMQPFPVKDDGCE  124 (765)
Q Consensus        56 ~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~----------~~ells~~dg~V~~v~~lP~p~~~~~~d  124 (765)
                      .+.|..+.|..-. .....+.+|++|..+| ++|||+.....          ....+..|.++|.++.+.|.        
T Consensus       207 ~~~V~~v~wsp~~-~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--------  277 (524)
T 2j04_B          207 FGEVWDLKWHEGC-HAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--------  277 (524)
T ss_dssp             CCSEEEEEECSSC-CCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--------
T ss_pred             CCcEEEEEECCCC-CCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--------
Confidence            4556667775410 0112256888888776 99999954221          11356778899999999752        


Q ss_pred             CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-EEEEEeCC-CCEEEE--Ee
Q 004255          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-YEHVLRFR-SSVCMV--RC  200 (765)
Q Consensus       125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~-~v~tL~~~-s~V~sV--~~  200 (765)
                          .  +||+.+                                 .+++|++||+++++ ....+..+ ..|.+|  .+
T Consensus       278 ----~--~lasgs---------------------------------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~  318 (524)
T 2j04_B          278 ----T--TVVCGF---------------------------------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY  318 (524)
T ss_dssp             ----S--EEEEEE---------------------------------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC
T ss_pred             ----C--eEEEEe---------------------------------CCCEEEEEECCCCCCceEEeecccccEEEEEEEc
Confidence                1  555422                                 13699999999874 44566654 689999  45


Q ss_pred             cC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCC
Q 004255          201 SP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN  276 (765)
Q Consensus       201 s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~  276 (765)
                      ++   ++||++. +++|+|||+.+++++.++.+|...         .  ....++++|       +.             
T Consensus       319 s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~---------~--~v~~v~fsp-------~~-------------  367 (524)
T 2j04_B          319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG---------S--NLVPVVYCP-------QI-------------  367 (524)
T ss_dssp             CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC---------C--SCCCEEEET-------TT-------------
T ss_pred             CCCCCeEEEEeccCCeEEEEECCCCCccccccccccc---------C--cccceEeCC-------Cc-------------
Confidence            65   5777755 568999999998887777654320         0  012334433       10             


Q ss_pred             CCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255          277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF  356 (765)
Q Consensus       277 lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl  356 (765)
                                    .                                                 .++.++.|++|+|||+
T Consensus       368 --------------~-------------------------------------------------~l~s~~~d~tv~lwd~  384 (524)
T 2j04_B          368 --------------Y-------------------------------------------------SYIYSDGASSLRAVPS  384 (524)
T ss_dssp             --------------T-------------------------------------------------EEEEECSSSEEEEEET
T ss_pred             --------------C-------------------------------------------------eEEEeCCCCcEEEEEC
Confidence                          0                                                 0112345779999999


Q ss_pred             CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC---------ccccCC----------
Q 004255          357 VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH---------KYDWNS----------  417 (765)
Q Consensus       357 ~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~---------~~~~~~----------  417 (765)
                      .++.++.+|.+|.++|++|+|||+|++||+||.|| +|+|||+.........+..         ...++.          
T Consensus       385 ~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg-tv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~  463 (524)
T 2j04_B          385 RAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG-SLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSS  463 (524)
T ss_dssp             TCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT-EEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCC
T ss_pred             cccccceeeecCCCceEEEEeCCCCCeEEEEECCC-EEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCC
Confidence            99998889999999999999999999999999966 5999997542111100000         000111          


Q ss_pred             --------cceEEEEEecccccccEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 004255          418 --------SHVHLYKLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       418 --------s~~~l~~l~rG~~~a~I~slaFSpDg---~~Las~S~dgTVhIwdl~~  462 (765)
                              ....+..+. |+ ...|++|+||||+   .+||+|+.||+|+||++.-
T Consensus       464 ~~~~~~~~~g~~~~~l~-gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          464 YEVYPLTVNDVSKAKID-AH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCCCC--------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ceecccccCCcceeeec-CC-CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence                    112233332 32 3569999999996   4999999999999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.86  E-value=4.2e-19  Score=196.45  Aligned_cols=238  Identities=13%  Similarity=0.142  Sum_probs=176.7

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      .++++.|..+.|..    +   + .|++|..+| ++|||++ .+++...+..|.++|.++++.|.|           ...
T Consensus       159 ~~h~~~V~~l~~~~----~---~-~l~s~s~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~-----------~~~  218 (464)
T 3v7d_B          159 SGHDGGVWALKYAH----G---G-ILVSGSTDRTVRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYK-----------NIK  218 (464)
T ss_dssp             CCCSSCEEEEEECS----T---T-EEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEEESS-----------SCE
T ss_pred             eCCCcCEEEEEEcC----C---C-EEEEEeCCCCEEEEECC-CCcEEEEECCCCCccEEEEEecCC-----------CCC
Confidence            35677777777743    1   2 677777766 9999995 577888888999999999999643           223


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------------------EEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------------------EHV  188 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-----------------------v~t  188 (765)
                      +|++.+.                                 +++|++||+.+++.                       +..
T Consensus       219 ~l~s~s~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          219 YIVTGSR---------------------------------DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEEEEET---------------------------------TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEEEEcC---------------------------------CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            5654221                                 36899999998763                       444


Q ss_pred             EeC-CCCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCcee
Q 004255          189 LRF-RSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLL  266 (765)
Q Consensus       189 L~~-~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~  266 (765)
                      +.. ...|.++..+.++|+++. ++.|++||+.+++++.++..|..+             ...++++|       +..  
T Consensus       266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~~--  323 (464)
T 3v7d_B          266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR-------------IYSTIYDH-------ERK--  323 (464)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEEET-------TTT--
T ss_pred             ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC-------------EEEEEEcC-------CCC--
Confidence            543 358899988888888876 567999999999988887765542             12333322       100  


Q ss_pred             cCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccC
Q 004255          267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD  346 (765)
Q Consensus       267 ~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~  346 (765)
                                                                                                .++.+.
T Consensus       324 --------------------------------------------------------------------------~l~sg~  329 (464)
T 3v7d_B          324 --------------------------------------------------------------------------RCISAS  329 (464)
T ss_dssp             --------------------------------------------------------------------------EEEEEE
T ss_pred             --------------------------------------------------------------------------EEEEEe
Confidence                                                                                      011345


Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      .||.|+|||+.+++.+..+.+|..+|.+++|+  +.+|++++.|| .|+|||+..       +          ...+.+.
T Consensus       330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg-~v~vwd~~~-------~----------~~~~~~~  389 (464)
T 3v7d_B          330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADG-SIRGWDAND-------Y----------SRKFSYH  389 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE
T ss_pred             CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC-cEEEEECCC-------C----------ceeeeec
Confidence            68899999999999999999999999999998  58999999966 599999964       2          3444443


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                         +...+..++|++|+++|++++ ||+|+|||+...
T Consensus       390 ---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          390 ---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             ---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             ---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence               234577889999999999999 899999999863

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=7.3e-21  Score=218.68  Aligned_cols=233  Identities=12%  Similarity=0.074  Sum_probs=157.8

Q ss_pred             eEEEEEecCc-EEEEEccCCCcce----EeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCc
Q 004255           76 QVLLLGYQNG-FQVLDVEDASNFN----ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR  150 (765)
Q Consensus        76 ~vL~~G~~~G-~qVWdv~~~g~~~----ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~  150 (765)
                      +.|+.|..+| ++|||++. +++.    ..+..|.+.|..|++.|...       +.....+||.++.            
T Consensus       174 ~~laS~s~D~tI~iWd~~~-~~~~~~~~~~l~~~~~~V~~v~wsp~~~-------~~~~~~~LAs~s~------------  233 (524)
T 2j04_B          174 EMFDKEKHSSCIQIFKMNT-STLHCVKVQTIVHSFGEVWDLKWHEGCH-------APHLVGCLSFVSQ------------  233 (524)
T ss_dssp             --------CEEEEEEEEET-TTCCEEEEEEEEECCCSEEEEEECSSCC-------CSSSSCEEEEEET------------
T ss_pred             hhhccCCCCceEEEEEccC-CCCCceEEEEEEecCCcEEEEEECCCCC-------CCCCCceEEEEec------------
Confidence            3445455555 99999964 4432    34567778999999998631       1122347776432            


Q ss_pred             CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------EEEEeCC-CCEEEEEecC-CeEEEEe-CCeEEEE
Q 004255          151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------EHVLRFR-SSVCMVRCSP-RIVAVGL-ATQIYCF  216 (765)
Q Consensus       151 ~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-----------v~tL~~~-s~V~sV~~s~-~~LaV~~-~~~I~iw  216 (765)
                                           +++|+|||+.+++.           ..++..+ ..|.+|++++ ..|++|. ++.|++|
T Consensus       234 ---------------------DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lW  292 (524)
T 2j04_B          234 ---------------------EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEF  292 (524)
T ss_dssp             ---------------------TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred             ---------------------CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEE
Confidence                                 36899999987642           2355544 6899999976 6777765 5689999


Q ss_pred             ECCCCce-eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCccee
Q 004255          217 DALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVA  295 (765)
Q Consensus       217 D~~t~~~-l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva  295 (765)
                      |+.+++. ..++..|..+             ...+++     +++.+.                           ..   
T Consensus       293 D~~~~~~~~~~~~~H~~~-------------V~sv~~-----~~s~~g---------------------------~~---  324 (524)
T 2j04_B          293 DLTDPEVPSFYDQVHDSY-------------ILSVST-----AYSDFE---------------------------DT---  324 (524)
T ss_dssp             ETTBCSSCSEEEECSSSC-------------EEEEEE-----ECCTTS---------------------------CC---
T ss_pred             ECCCCCCceEEeeccccc-------------EEEEEE-----EcCCCC---------------------------Ce---
Confidence            9997743 3445555542             111210     111100                           00   


Q ss_pred             eehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCC--CeE
Q 004255          296 RYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS--PIS  373 (765)
Q Consensus       296 ~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~--~Is  373 (765)
                                                                   .+++++.||+|+|||+.+++++..+.+|..  .|.
T Consensus       325 ---------------------------------------------~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          325 ---------------------------------------------VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             ---------------------------------------------EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             ---------------------------------------------EEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence                                                         123456799999999999888878888864  588


Q ss_pred             EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 004255          374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG  453 (765)
Q Consensus       374 aLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg  453 (765)
                      +++|+|+|..||+++.|+ +|+|||++.       +          .++..+. | +...|++|+|||||++||+|+.||
T Consensus       360 ~v~fsp~~~~l~s~~~d~-tv~lwd~~~-------~----------~~~~~l~-g-H~~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          360 PVVYCPQIYSYIYSDGAS-SLRAVPSRA-------A----------FAVHPLV-S-RETTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             CEEEETTTTEEEEECSSS-EEEEEETTC-------T----------TCCEEEE-E-CSSCEEEEECCSSCCBCEEEETTT
T ss_pred             ceEeCCCcCeEEEeCCCC-cEEEEECcc-------c----------ccceeee-c-CCCceEEEEeCCCCCeEEEEECCC
Confidence            999999999999999855 699999865       2          2334454 4 346799999999999999999999


Q ss_pred             cEEEEeCCC
Q 004255          454 TCHVFVLSP  462 (765)
Q Consensus       454 TVhIwdl~~  462 (765)
                      +|+||++..
T Consensus       420 tv~lwd~~~  428 (524)
T 2j04_B          420 SLIITNAAR  428 (524)
T ss_dssp             EEECCBSCS
T ss_pred             EEEEEechH
Confidence            999999753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.86  E-value=3.4e-21  Score=206.65  Aligned_cols=237  Identities=14%  Similarity=0.107  Sum_probs=155.1

Q ss_pred             CcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEE
Q 004255           57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL  134 (765)
Q Consensus        57 ~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g-~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLa  134 (765)
                      +.|..+.|..       .++.|++|..+| ++|||+.... .+...+..|.++|.++++.|+.             .+|+
T Consensus        12 ~~v~~~~~s~-------~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------------~~l~   71 (377)
T 3dwl_C           12 KPSYEHAFNS-------QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-------------NRIV   71 (377)
T ss_dssp             SCCSCCEECS-------SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-------------CCEE
T ss_pred             CcEEEEEECC-------CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-------------CEEE
Confidence            3455555543       366888886665 9999996432 5667788899999999999752             2565


Q ss_pred             EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEEEEe-CCCCEEEEEecC--CeEEEE
Q 004255          135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVLR-FRSSVCMVRCSP--RIVAVG  208 (765)
Q Consensus       135 vv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~---~v~tL~-~~s~V~sV~~s~--~~LaV~  208 (765)
                      +.+.                                 +++|++||+.+++   .+..+. +...|.++++++  ++|+++
T Consensus        72 s~s~---------------------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  118 (377)
T 3dwl_C           72 TCSQ---------------------------------DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG  118 (377)
T ss_dssp             EEET---------------------------------TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEE
T ss_pred             EEeC---------------------------------CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEE
Confidence            5321                                 3689999999987   444443 457999999987  566665


Q ss_pred             e-CCeEEEEECCCCce---eEEEEe-cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCC
Q 004255          209 L-ATQIYCFDALTLEN---KFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       209 ~-~~~I~iwD~~t~~~---l~tl~t-~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                      . ++.|++||+.+.+.   ...+.. |..+             ...++++|  ++||++                     
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~~~~~l~~~---------------------  164 (377)
T 3dwl_C          119 SGARVISVCYFEQENDWWVSKHLKRPLRST-------------ILSLDWHPNNVLLAAG---------------------  164 (377)
T ss_dssp             ESSSCEEECCC-----CCCCEEECSSCCSC-------------EEEEEECTTSSEEEEE---------------------
T ss_pred             ecCCeEEEEEECCcccceeeeEeecccCCC-------------eEEEEEcCCCCEEEEE---------------------
Confidence            5 56799999998763   455544 3331             23445544  233333                     


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC----
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV----  357 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~----  357 (765)
                                                                                      ..||.|+|||+.    
T Consensus       165 ----------------------------------------------------------------~~d~~i~iwd~~~~~~  180 (377)
T 3dwl_C          165 ----------------------------------------------------------------CADRKAYVLSAYVRDV  180 (377)
T ss_dssp             ----------------------------------------------------------------ESSSCEEEEEECCSSC
T ss_pred             ----------------------------------------------------------------eCCCEEEEEEEEeccc
Confidence                                                                            345667777763    


Q ss_pred             --------------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          358 --------------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       358 --------------s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                                    .++++..+ +|..+|.+++|+|+|++||+++.|| .|+|||+..       +.      .....+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-~i~iwd~~~-------~~------~~~~~~~  245 (377)
T 3dwl_C          181 DAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS-SVTIAYPSA-------PE------QPPRALI  245 (377)
T ss_dssp             C-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-EEC-CEECS-------TT------SCEEECC
T ss_pred             CCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-cEEEEECCC-------CC------CcceeeE
Confidence                          35567777 9999999999999999999999966 599999965       21      0001133


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .+. + +...|.+++|+|||++|++++.++.+ +|+...
T Consensus       246 ~~~-~-~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          246 TVK-L-SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             CEE-C-SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             eec-C-CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence            443 3 34569999999999999999877766 887764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.2e-19  Score=186.55  Aligned_cols=242  Identities=12%  Similarity=0.194  Sum_probs=173.9

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      ..+.+.|..+.|..       .++.|++|..+| ++|||+. .+++...+. +.++|..+.+.|+             ..
T Consensus        71 ~~h~~~v~~~~~~~-------~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~-------------~~  128 (369)
T 3zwl_B           71 DGHTGTIWSIDVDC-------FTKYCVTGSADYSIKLWDVS-NGQCVATWK-SPVPVKRVEFSPC-------------GN  128 (369)
T ss_dssp             CCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETT-TCCEEEEEE-CSSCEEEEEECTT-------------SS
T ss_pred             hhcCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECC-CCcEEEEee-cCCCeEEEEEccC-------------CC
Confidence            34666777777754       255777777766 9999995 466666666 7789999999874             23


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------EEEEeC-CC--CEEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------EHVLRF-RS--SVCM  197 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-----------v~tL~~-~s--~V~s  197 (765)
                      +|++...+ .                           ...++.|++||+.++..           +..+.. ..  .|.+
T Consensus       129 ~l~~~~~~-~---------------------------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          129 YFLAILDN-V---------------------------MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             EEEEEECC-B---------------------------TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             EEEEecCC-c---------------------------cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            66553321 0                           00136899999976642           223322 22  8999


Q ss_pred             EEecC--CeEEEEe-CCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCcc
Q 004255          198 VRCSP--RIVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGR  271 (765)
Q Consensus       198 V~~s~--~~LaV~~-~~~I~iwD~~t-~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~  271 (765)
                      +++++  ++|+++. ++.|++||+.+ .+....+..+..+             ...++++|  ++|              
T Consensus       181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~l--------------  233 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS-------------ISDMQFSPDLTYF--------------  233 (369)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC-------------EEEEEECTTSSEE--------------
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc-------------eeEEEECCCCCEE--------------
Confidence            99987  5777765 56799999998 6666666655431             22344432  111              


Q ss_pred             ccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeE
Q 004255          272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV  351 (765)
Q Consensus       272 ~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V  351 (765)
                                                                                             +.+..||.|
T Consensus       234 -----------------------------------------------------------------------~~~~~d~~i  242 (369)
T 3zwl_B          234 -----------------------------------------------------------------------ITSSRDTNS  242 (369)
T ss_dssp             -----------------------------------------------------------------------EEEETTSEE
T ss_pred             -----------------------------------------------------------------------EEecCCceE
Confidence                                                                                   123467899


Q ss_pred             EEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-------------EEEEEeCCCCcccCCCCCCccccCCc
Q 004255          352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-------------NINIFRIMPSCMRSGSGNHKYDWNSS  418 (765)
Q Consensus       352 ~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt-------------~IrVWdi~~~~~~~~sG~~~~~~~~s  418 (765)
                      +|||+.+++.+..+. |..++.+++|+|+|.+|++++.++.             .|++||+..       +         
T Consensus       243 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------~---------  305 (369)
T 3zwl_B          243 FLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-------E---------  305 (369)
T ss_dssp             EEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-------C---------
T ss_pred             EEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-------C---------
Confidence            999999999988887 7789999999999999999998663             699999865       2         


Q ss_pred             ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                       ..+..+. ++ ...|.+++|+||+++|++++.||+|+||+++.
T Consensus       306 -~~~~~~~-~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          306 -EEIGRVQ-GH-FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             -CEEEEEE-CC-SSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             -cchhhee-cc-cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence             3555654 33 45799999999999999999999999999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.86  E-value=2.4e-19  Score=211.93  Aligned_cols=252  Identities=13%  Similarity=0.075  Sum_probs=189.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..++.+.|..+.|..       +++.|++|..+| ++|||+. .+.....+..|.++|.++++.|+             .
T Consensus         9 ~~~h~~~v~~i~~sp-------~~~~la~~~~~g~v~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~-------------~   67 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHP-------TEPWVLTTLYSGRVEIWNYE-TQVEVRSIQVTETPVRAGKFIAR-------------K   67 (814)
T ss_dssp             EEEECSCEEEEEECS-------SSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGG-------------G
T ss_pred             eecCCCceEEEEECC-------CCCEEEEEeCCCEEEEEECC-CCceEEEEecCCCcEEEEEEeCC-------------C
Confidence            345778899888865       366888888776 9999995 57777888899999999999975             2


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAV  207 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV  207 (765)
                      .+|++.+.                                 +++|++||+.+++.+.++.. ...|.++++++  +.|++
T Consensus        68 ~~l~~~~~---------------------------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  114 (814)
T 3mkq_A           68 NWIIVGSD---------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS  114 (814)
T ss_dssp             TEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEE
Confidence            36665321                                 36899999999999999985 46899999997  56777


Q ss_pred             Ee-CCeEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255          208 GL-ATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (765)
Q Consensus       208 ~~-~~~I~iwD~~t~-~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s  285 (765)
                      +. ++.|++||+.+. +....+..|..+             ...++++|       .+                      
T Consensus       115 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------------v~~~~~~p-------~~----------------------  152 (814)
T 3mkq_A          115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------VMCVAFNP-------KD----------------------  152 (814)
T ss_dssp             EETTSEEEEEEGGGTSEEEEEEECCSSC-------------EEEEEEET-------TE----------------------
T ss_pred             EcCCCEEEEEECCCCceEEEEEcCCCCc-------------EEEEEEEc-------CC----------------------
Confidence            66 458999999887 444555555442             12334432       00                      


Q ss_pred             cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (765)
Q Consensus       286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~  365 (765)
                           +.                                                .++.+..||.|++||+.+++....+
T Consensus       153 -----~~------------------------------------------------~l~~~~~dg~v~vwd~~~~~~~~~~  179 (814)
T 3mkq_A          153 -----PS------------------------------------------------TFASGCLDRTVKVWSLGQSTPNFTL  179 (814)
T ss_dssp             -----EE------------------------------------------------EEEEEETTSEEEEEETTCSSCSEEE
T ss_pred             -----CC------------------------------------------------EEEEEeCCCeEEEEECCCCcceeEE
Confidence                 00                                                0112346889999999988887777


Q ss_pred             ccCC-CCeEEEEECC--CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255          366 KAHT-SPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (765)
Q Consensus       366 ~aH~-~~IsaLaFSp--dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (765)
                      ..|. .+|.+++|+|  +|.+|++++.+| .|++||+..       +          ..+..+. + +...|.+++|+||
T Consensus       180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~-------~----------~~~~~~~-~-~~~~v~~~~~~~~  239 (814)
T 3mkq_A          180 TTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQT-------K----------SCVATLE-G-HMSNVSFAVFHPT  239 (814)
T ss_dssp             ECCCTTCCCEEEECCSTTCCEEEEECTTS-EEEEEETTT-------T----------EEEEEEE-C-CSSCEEEEEECSS
T ss_pred             ecCCCCCEEEEEEEECCCCCEEEEEeCCC-EEEEEECCC-------C----------cEEEEEc-C-CCCCEEEEEEcCC
Confidence            7655 8999999999  999999999966 599999854       3          3555554 3 3356999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255          443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       443 g~~Las~S~dgTVhIwdl~~~gg~~~~~~h  472 (765)
                      +++|++++.||+|++||+........+..|
T Consensus       240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            999999999999999999876544445444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.85  E-value=1.9e-18  Score=182.20  Aligned_cols=258  Identities=11%  Similarity=0.093  Sum_probs=172.4

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEec---Cc-EEEEEccCCCcceEe-eeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ---NG-FQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~---~G-~qVWdv~~~g~~~el-ls~~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      .++++.|.-+.|..    +  ...+|++|..   +| ++|||++. +++..+ ...|.++|.++++.|+.          
T Consensus        15 ~~h~~~v~~~~~~p----~--~~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~----------   77 (357)
T 3i2n_A           15 KGFNYTVFDCKWVP----C--SAKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATS----------   77 (357)
T ss_dssp             EECSSCEEEEEECT----T--SSEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCC----------
T ss_pred             cCCCCceEEEEEcC----C--CceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCC----------
Confidence            34778888888865    1  2467788865   55 99999964 555444 33678999999998741          


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-EEEEEeCC-CCEEEEEe-----
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-YEHVLRFR-SSVCMVRC-----  200 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~-~v~tL~~~-s~V~sV~~-----  200 (765)
                      ....+|++.+.                                 +++|++||+.+++ .+..+..+ ..|.++.+     
T Consensus        78 ~~~~~l~~~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  124 (357)
T 3i2n_A           78 LQQRYLATGDF---------------------------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG  124 (357)
T ss_dssp             TTTCCEEEEET---------------------------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGG
T ss_pred             CCCceEEEecC---------------------------------CCeEEEEeCCCCCccEEEEEecccceEEEeeccccc
Confidence            01235655221                                 3689999999988 88888754 68999964     


Q ss_pred             -cC--CeEEEEe-CCeEEEEECCCCc-eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCC
Q 004255          201 -SP--RIVAVGL-ATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQ  275 (765)
Q Consensus       201 -s~--~~LaV~~-~~~I~iwD~~t~~-~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~  275 (765)
                       ++  ++|+++. ++.|++||+.+++ ....+..+....         ......+++++   ++                
T Consensus       125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~---~~----------------  176 (357)
T 3i2n_A          125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN---------KRDCWTVAFGN---AY----------------  176 (357)
T ss_dssp             CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC---------CCCEEEEEEEC---CC----------------
T ss_pred             cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC---------CCceEEEEEEe---cc----------------
Confidence             33  4777665 5679999999887 555554433210         00011122110   00                


Q ss_pred             CCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEE
Q 004255          276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD  355 (765)
Q Consensus       276 ~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwD  355 (765)
                                 +|.+.                                                 .++.+..+|.|++||
T Consensus       177 -----------~~~~~-------------------------------------------------~l~~~~~d~~i~i~d  196 (357)
T 3i2n_A          177 -----------NQEER-------------------------------------------------VVCAGYDNGDIKLFD  196 (357)
T ss_dssp             -----------C-CCC-------------------------------------------------EEEEEETTSEEEEEE
T ss_pred             -----------CCCCC-------------------------------------------------EEEEEccCCeEEEEE
Confidence                       00100                                                 112345689999999


Q ss_pred             CCCCcEEEEeccCCCCeEEEEECC---CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 004255          356 FVTRAIISQFKAHTSPISALCFDP---SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA  432 (765)
Q Consensus       356 l~s~~~i~~~~aH~~~IsaLaFSp---dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a  432 (765)
                      +.+++.+ ....|..+|.+++|+|   +|.+|++++.+| .|+|||+....     .       ........+ .+ +..
T Consensus       197 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~-----~-------~~~~~~~~~-~~-~~~  260 (357)
T 3i2n_A          197 LRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEG-KFHVFDMRTQH-----P-------TKGFASVSE-KA-HKS  260 (357)
T ss_dssp             TTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTT-EEEEEEEEEEE-----T-------TTEEEEEEE-EC-CSS
T ss_pred             CccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCC-eEEEEeCcCCC-----c-------ccceeeecc-CC-CcC
Confidence            9998874 4478899999999999   999999999966 59999985410     0       000111122 23 345


Q ss_pred             cEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCC
Q 004255          433 TIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       433 ~I~slaFSpDg~-~Las~S~dgTVhIwdl~~~g  464 (765)
                      .|++++|+||++ +|++++.||+|+|||+....
T Consensus       261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            799999999999 89999999999999998643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.85  E-value=3.7e-20  Score=205.14  Aligned_cols=284  Identities=12%  Similarity=0.079  Sum_probs=179.7

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEe--eeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~el--ls~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      +.+.|..+.|...      .+++|++|..+| |+|||++. ++...+  +.+|.++|.+|+|.|.            ...
T Consensus       118 ~~~~V~~l~~~P~------~~~~lasGs~dg~i~lWd~~~-~~~~~~~~~~gH~~~V~~l~f~p~------------~~~  178 (435)
T 4e54_B          118 FDRRATSLAWHPT------HPSTVAVGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSITGLKFNPL------------NTN  178 (435)
T ss_dssp             CSSCEEEEEECSS------CTTCEEEEETTSCEEEECSSC-CSCCEEECCCSSSCCCCEEEECSS------------CTT
T ss_pred             CCCCEEEEEEeCC------CCCEEEEEeCCCEEEEEECCC-CCceeEEEccCCCCCEEEEEEeCC------------CCC
Confidence            4566888888531      256899999887 99999964 333333  4578899999999873            112


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CCEEEEEecC--CeEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVA  206 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~--~~La  206 (765)
                      +|++.+                                 .+++|+|||++++........+   ..+.++++++  ++|+
T Consensus       179 ~l~s~s---------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  225 (435)
T 4e54_B          179 QFYASS---------------------------------MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVV  225 (435)
T ss_dssp             EEEEEC---------------------------------SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEE
T ss_pred             EEEEEe---------------------------------CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEE
Confidence            565422                                 1368999999876554444332   3567888876  6788


Q ss_pred             EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCC
Q 004255          207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (765)
Q Consensus       207 V~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~  282 (765)
                      +|. ++.|++||+.+ +.+.++..|..+             ...++|+|   .+||.++.+..     ...|+..+....
T Consensus       226 ~g~~dg~i~~wd~~~-~~~~~~~~h~~~-------------v~~v~~~p~~~~~~~s~s~d~~-----v~iwd~~~~~~~  286 (435)
T 4e54_B          226 TGDNVGNVILLNMDG-KELWNLRMHKKK-------------VTHVALNPCCDWFLATASVDQT-----VKIWDLRQVRGK  286 (435)
T ss_dssp             EECSSSBEEEEESSS-CBCCCSBCCSSC-------------EEEEEECTTCSSEEEEEETTSB-----CCEEETTTCCSS
T ss_pred             EEeCCCcEeeeccCc-ceeEEEecccce-------------EEeeeecCCCceEEEEecCcce-----eeEEeccccccc
Confidence            776 45799999864 455666666542             35678887   46777765521     113332221100


Q ss_pred             CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i  362 (765)
                      ..        +.                 ...++      ......+.++++++    .+++++.||.|+|||+.+++..
T Consensus       287 ~~--------~~-----------------~~~~h------~~~v~~~~~spdg~----~l~s~~~D~~i~iwd~~~~~~~  331 (435)
T 4e54_B          287 AS--------FL-----------------YSLPH------RHPVNAACFSPDGA----RLLTTDQKSEIRVYSASQWDCP  331 (435)
T ss_dssp             SC--------CS-----------------BCCBC------SSCEEECCBCTTSS----EEEEEESSSCEEEEESSSSSSE
T ss_pred             ce--------EE-----------------Eeeec------cccccceeECCCCC----eeEEEcCCCEEEEEECCCCccc
Confidence            00        00                 00000      00111223333333    2456789999999999999888


Q ss_pred             EEeccCCC------CeEEEEECCCCCEEEEEEc-----------CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          363 SQFKAHTS------PISALCFDPSGTLLVTASV-----------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       363 ~~~~aH~~------~IsaLaFSpdG~lLATaS~-----------dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      ..+..|..      .+..+.|+|++.++++++.           +++.|+|||+.+       |          ..+..+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~-------g----------~~~~~l  394 (435)
T 4e54_B          332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS-------G----------KMMCQL  394 (435)
T ss_dssp             EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS-------C----------CEEEEE
T ss_pred             eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC-------C----------cEEEEE
Confidence            88877653      2334567777777766643           456799999865       4          466777


Q ss_pred             ecccccccEEEE-EEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          426 HRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       426 ~rG~~~a~I~sl-aFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ..++ ...|.++ +|||||++||+++ |++|+||++.+.
T Consensus       395 ~~~~-~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          395 YDPE-SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             CCSS-CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             eCCC-CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence            5443 3457776 6999999999876 789999999763

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.85  E-value=4.5e-19  Score=201.43  Aligned_cols=308  Identities=11%  Similarity=0.043  Sum_probs=190.2

Q ss_pred             cEEEEEEeeccCCCCCC-CeEEEEEecCc-EEEEEccCCCcceEee-e---eccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           58 QVTWAGFDRLEYGPSVF-KQVLLLGYQNG-FQVLDVEDASNFNELV-S---KRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        58 ~v~w~~fd~l~~~~~~~-~~vL~~G~~~G-~qVWdv~~~g~~~ell-s---~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      .|..+.|..       . ++.|++|..+| ++|||+. .++....+ .   .|.++|..+.+. +             ..
T Consensus       208 ~v~~~~~~~-------~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~v~~~~~~-~-------------~~  265 (615)
T 1pgu_A          208 FVRDVEFSP-------DSGEFVITVGSDRKISCFDGK-SGEFLKYIEDDQEPVQGGIFALSWL-D-------------SQ  265 (615)
T ss_dssp             CEEEEEECS-------TTCCEEEEEETTCCEEEEETT-TCCEEEECCBTTBCCCSCEEEEEES-S-------------SS
T ss_pred             eEEEEEECC-------CCCCEEEEEeCCCeEEEEECC-CCCEeEEecccccccCCceEEEEEc-C-------------CC
Confidence            677777654       3 46777777665 9999995 46666666 5   788999999976 3             23


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-----CCEEEEEe-cCCeE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-----SSVCMVRC-SPRIV  205 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-----s~V~sV~~-s~~~L  205 (765)
                      +|++.+.                                 +++|++||+++++.+..+..+     ..+.++.+ +.+.|
T Consensus       266 ~l~~~~~---------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  312 (615)
T 1pgu_A          266 KFATVGA---------------------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI  312 (615)
T ss_dssp             EEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred             EEEEEcC---------------------------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeE
Confidence            5654221                                 368999999999999999876     56777777 44666


Q ss_pred             EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCce--ecCCccccCCCCCCCCC
Q 004255          206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL--LSNSGRLSPQNLTPSGV  282 (765)
Q Consensus       206 aV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~--~~~~G~~s~~~lt~~~~  282 (765)
                      +++. ++.|++||+.+++.+..+..|..+             ...+++ |. |+.++.+..  ++....+. ........
T Consensus       313 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------v~~~~~-~~-l~~~~~dg~i~~w~~~~~~-~~~~~~v~  376 (615)
T 1pgu_A          313 ISLSLDGTLNFYELGHDEVLKTISGHNKG-------------ITALTV-NP-LISGSYDGRIMEWSSSSMH-QDHSNLIV  376 (615)
T ss_dssp             EEEETTSCEEEEETTEEEEEEEECCCSSC-------------EEEEET-TT-TEEEETTSCEEETTTTEEE-CCCCSCEE
T ss_pred             EEEECCCCEEEEECCCCcEEEEEeCCCCC-------------EEEEEe-cC-cEEECCCCeEEEEEchhhc-CcccCceE
Confidence            6655 568999999998888888766552             234555 55 555544321  11100000 00000111


Q ss_pred             CCCcCCCCCcceeeehhhhh---hhhhccc---------------------ceee------ccccc-ccCCCCCCCCccC
Q 004255          283 SPSTSPGGSSLVARYAMEHS---KQFAAGL---------------------SKTL------SKYCQ-ELLPDGSSSPVSP  331 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~---k~la~G~---------------------~ktl------s~~~~-~~~p~~s~~~~s~  331 (765)
                      ...+ +.+..+++. ..+..   +++..+-                     .+.+      .+... .+..........+
T Consensus       377 ~~~~-~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (615)
T 1pgu_A          377 SLDN-SKAQEYSSI-SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL  454 (615)
T ss_dssp             EEEC-CSTTCCEEE-ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred             EEEE-CCCcEEEEE-eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE
Confidence            1111 111111110 00000   0000000                     0000      00000 0000000000111


Q ss_pred             CCccccccccccccCC-CCeEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCC
Q 004255          332 NSVWKVGRHAGADMDN-AGIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG  409 (765)
Q Consensus       332 s~~~~~~~~~~~~~~~-dG~V~IwDl~s~~~i-~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG  409 (765)
                      +      +..++.+.. +|.|++||+.+++.. ..+.+|..+|.+++|+|+|++||+++.||. |+|||+..       +
T Consensus       455 ~------~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~-------~  520 (615)
T 1pgu_A          455 S------QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQS-------R  520 (615)
T ss_dssp             C------SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T
T ss_pred             c------CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCC-------C
Confidence            1      112345667 999999999988766 778899999999999999999999999775 99999965       3


Q ss_pred             CCccccCCcceEEEEEecccccccEEEEEEcc----------CCCEEEEEeCCCcEEEEeCCCC
Q 004255          410 NHKYDWNSSHVHLYKLHRGITSATIQDICFSH----------YSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       410 ~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp----------Dg~~Las~S~dgTVhIwdl~~~  463 (765)
                                ..+..+. +.+...|++++|+|          |+++||+++.||+|+||++...
T Consensus       521 ----------~~~~~~~-~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          521 ----------EVKTSRW-AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  573 (615)
T ss_dssp             ----------EEEECCS-CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             ----------cceeEee-cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence                      3444443 42456799999999          9999999999999999999875

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.85  E-value=4e-19  Score=193.27  Aligned_cols=269  Identities=11%  Similarity=0.004  Sum_probs=161.7

Q ss_pred             CeEEEEEecCcEEEEEccCCC--cceEeeeeccCCEEEEEEecCCCC---------C---CCCCCcccc----CCEEEEE
Q 004255           75 KQVLLLGYQNGFQVLDVEDAS--NFNELVSKRDGPVSFLQMQPFPVK---------D---DGCEGFRKL----HPFLLVV  136 (765)
Q Consensus        75 ~~vL~~G~~~G~qVWdv~~~g--~~~ells~~dg~V~~v~~lP~p~~---------~---~~~d~f~~s----rpLLavv  136 (765)
                      .-|++++....+++|+..+..  +....+..|+.||..|.++|+--.         .   ...-.|...    +++|+. 
T Consensus        54 ~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s-  132 (356)
T 2w18_A           54 EPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK-  132 (356)
T ss_dssp             EEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE-
T ss_pred             ccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe-
Confidence            469999999999999997643  344455556667777776652100         0   000001112    222221 


Q ss_pred             EcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEeCCC-CEEEEEecC-----CeEEEEe
Q 004255          137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLRFRS-SVCMVRCSP-----RIVAVGL  209 (765)
Q Consensus       137 ~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdl-ktg~~v~tL~~~s-~V~sV~~s~-----~~LaV~~  209 (765)
                      .+.. .         ..-++.+|..-....  ...+++|++|++ .+|+.+.++..++ .+..++|++     .+||.+.
T Consensus       133 ~g~~-~---------~v~~l~~g~lv~ss~--~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS  200 (356)
T 2w18_A          133 SGNI-K---------AVLGLTKRRLVSSSG--TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT  200 (356)
T ss_dssp             EEEE-E---------EEEEETTTEEEEEES--SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred             CCCe-E---------EEEecCCCcEEEecc--cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence            1000 0         000011111000000  012689999999 5588888887654 444444444     7888754


Q ss_pred             -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       210 -~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                       |++|+|||+.|+++++++.++.....          ....++|+|  ++++..+.+.     +  .|            
T Consensus       201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~----------~v~~vafSpdG~~lvs~s~~~-----~--~w------------  251 (356)
T 2w18_A          201 IMNNIVIWNLKTGQLLKKMHIDDSYQA----------SVCHKAYSEMGLLFIVLSHPC-----A--KE------------  251 (356)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCC---C----------CCEEEEEEETTEEEEEEC-------------------------
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCccee----------eeEEEEECCCCCEEEEeccCC-----C--cc------------
Confidence             66899999999999999986543100          122346655  3333332110     0  00            


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe-
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-  365 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~-  365 (765)
                                                                            .++++..|++|++||..+++.+..+ 
T Consensus       252 ------------------------------------------------------~laSGs~D~tIklWd~~tgk~l~v~~  277 (356)
T 2w18_A          252 ------------------------------------------------------SESLRSPVFQLIVINPKTTLSVGVML  277 (356)
T ss_dssp             ------------------------------------------------------------CCEEEEEEETTTTEEEEEEE
T ss_pred             ------------------------------------------------------eeeccCCCcEEEEEECCCCEEEEEEE
Confidence                                                                  0124568999999999999987765 


Q ss_pred             ----ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255          366 ----KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (765)
Q Consensus       366 ----~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (765)
                          .+|...+.+..+  +|.++|+++.|++ |||||+.+       |          +.+.+|. |++...+.+++|||
T Consensus       278 ~~~p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWDl~t-------G----------k~l~tL~-gH~~~vvs~vafSP  336 (356)
T 2w18_A          278 YCLPPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWDLLL-------G----------QCTALLP-PVSDQHWSFVKWSG  336 (356)
T ss_dssp             ECCCTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEETTT-------C----------SEEEEEC-CC--CCCCEEEECS
T ss_pred             eeccCCCcceeEcccc--CCCEEEEEcCCCc-EEEEECCC-------C----------cEEEEec-CCCCCeEEEEEECC
Confidence                478776554444  4899999999775 99999965       4          5777775 54444455799999


Q ss_pred             CCCEEEEEeCCCcEEEEeC
Q 004255          442 YSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       442 Dg~~Las~S~dgTVhIwdl  460 (765)
                      ||++|++|+.|+||+|||+
T Consensus       337 DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          337 TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SSSEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEECCCcEEEecC
Confidence            9999999999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.85  E-value=2.9e-19  Score=202.99  Aligned_cols=250  Identities=12%  Similarity=0.089  Sum_probs=186.2

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCC----cceEeeeeccCC-EEEEEEec--CCCCCCCCC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDAS----NFNELVSKRDGP-VSFLQMQP--FPVKDDGCE  124 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g----~~~ells~~dg~-V~~v~~lP--~p~~~~~~d  124 (765)
                      ...+++.|..+.|..       +++.|++|..+.++|||++ .+    +....+..|.++ |.++++.|  +.       
T Consensus        14 ~~~~~~~v~~~~~sp-------dg~~l~~~~~~~v~v~~~~-~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~-------   78 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDP-------TTNAIAYPCGKSAFVRCLD-DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-------   78 (615)
T ss_dssp             CCCCTTCCCCCEEET-------TTTEEEEEETTEEEEEECC-SSCCSSCSEEEECTTTTSCEEEEEECSSTTC-------
T ss_pred             CCCccCceeEEEECC-------CCCEEEEecCCeEEEEECC-CCCCccccceEEecCCCceEEEEEECcCCCC-------
Confidence            345778888888876       3668888887779999996 45    677788899999 99999997  52       


Q ss_pred             CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--------eEEEEEe-CCCCE
Q 004255          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--------CYEHVLR-FRSSV  195 (765)
Q Consensus       125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg--------~~v~tL~-~~s~V  195 (765)
                            .+||+...                                 +++|++||+.++        +.+..+. +...|
T Consensus        79 ------~~l~s~~~---------------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v  119 (615)
T 1pgu_A           79 ------QYLCSGDE---------------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI  119 (615)
T ss_dssp             ------CEEEEEET---------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE
T ss_pred             ------CEEEEecC---------------------------------CCEEEEEeCCCCcccccccccccchhhcccccE
Confidence                  36665221                                 368999999855        6777776 45799


Q ss_pred             EEEEecC--CeEEEEeCC-----eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecC
Q 004255          196 CMVRCSP--RIVAVGLAT-----QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSN  268 (765)
Q Consensus       196 ~sV~~s~--~~LaV~~~~-----~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~  268 (765)
                      .++++++  ++|+++..+     .|++||  +++.+..+..|..+             ...++++|       +.     
T Consensus       120 ~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~-------~~-----  172 (615)
T 1pgu_A          120 SDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR-------------INACHLKQ-------SR-----  172 (615)
T ss_dssp             EEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC-------------EEEEEECS-------SS-----
T ss_pred             EEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc-------------EEEEEECC-------CC-----
Confidence            9999998  577776654     688888  55666666555431             22334332       10     


Q ss_pred             CccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCC
Q 004255          269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA  348 (765)
Q Consensus       269 ~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~d  348 (765)
                                            ..                                                .++.+..|
T Consensus       173 ----------------------~~------------------------------------------------~l~~~~~d  182 (615)
T 1pgu_A          173 ----------------------PM------------------------------------------------RSMTVGDD  182 (615)
T ss_dssp             ----------------------SC------------------------------------------------EEEEEETT
T ss_pred             ----------------------Cc------------------------------------------------EEEEEeCC
Confidence                                  00                                                01134568


Q ss_pred             CeEEEEECCCCcEEEEeccCCC---CeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255          349 GIVVVKDFVTRAIISQFKAHTS---PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~---~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~  424 (765)
                      |.|+|||+.+++.+..+.+|..   +|.+++|+|+ |++|++++.||. |+|||+..       +          ..+..
T Consensus       183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~-------~----------~~~~~  244 (615)
T 1pgu_A          183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKS-------G----------EFLKY  244 (615)
T ss_dssp             TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTT-------C----------CEEEE
T ss_pred             CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCC-------C----------CEeEE
Confidence            9999999999999999999999   9999999999 999999999775 99999865       3          35556


Q ss_pred             Eec---ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255          425 LHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       425 l~r---G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h  472 (765)
                      +..   + +...|.+++|+ |+++|++++.|++|++||+........+..|
T Consensus       245 ~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          245 IEDDQEP-VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             CCBTTBC-CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ecccccc-cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            533   3 34579999999 9999999999999999999865443334333

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.85  E-value=1.5e-19  Score=190.23  Aligned_cols=256  Identities=12%  Similarity=0.028  Sum_probs=171.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK  128 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~--~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~  128 (765)
                      ...+++.|..+.|..       .++.|++|..+| ++|||++....  ....+..|.++|.++++.|+            
T Consensus         7 ~~~h~~~v~~~~~s~-------~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------   67 (342)
T 1yfq_A            7 EQAPKDYISDIKIIP-------SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN------------   67 (342)
T ss_dssp             SSCCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES------------
T ss_pred             ccCCCCcEEEEEEcC-------CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC------------
Confidence            346889999999986       145777777665 99999965331  13344578899999999974            


Q ss_pred             cCC-EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEe---CCCCEEEEEecC-
Q 004255          129 LHP-FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLR---FRSSVCMVRCSP-  202 (765)
Q Consensus       129 srp-LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdl-ktg~~v~tL~---~~s~V~sV~~s~-  202 (765)
                       .. +|++.+.                                 +++|++||+ .+++. ..+.   +...|.++++++ 
T Consensus        68 -~~~~l~~~~~---------------------------------dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~  112 (342)
T 1yfq_A           68 -TDLQIYVGTV---------------------------------QGEILKVDLIGSPSF-QALTNNEANLGICRICKYGD  112 (342)
T ss_dssp             -SSEEEEEEET---------------------------------TSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETT
T ss_pred             -CCcEEEEEcC---------------------------------CCeEEEEEeccCCce-EeccccCCCCceEEEEeCCC
Confidence             24 5554221                                 358999999 88876 4444   557999999985 


Q ss_pred             CeEEEEe-CCeEEEEECCC---------CceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccc
Q 004255          203 RIVAVGL-ATQIYCFDALT---------LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL  272 (765)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~t---------~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~  272 (765)
                      ++|+++. ++.|++||+.+         ++++.++. ++.             ....+++++..                
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~-------------~v~~~~~~~~~----------------  162 (342)
T 1yfq_A          113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN-------------KIFTMDTNSSR----------------  162 (342)
T ss_dssp             TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC-------------CEEEEEECSSE----------------
T ss_pred             CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC-------------ceEEEEecCCc----------------
Confidence            6666654 56899999876         33222211 111             01112221111                


Q ss_pred             cCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEE
Q 004255          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (765)
Q Consensus       273 s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~  352 (765)
                                                                                           ++.+..+|.|+
T Consensus       163 ---------------------------------------------------------------------l~~~~~d~~i~  173 (342)
T 1yfq_A          163 ---------------------------------------------------------------------LIVGMNNSQVQ  173 (342)
T ss_dssp             ---------------------------------------------------------------------EEEEESTTEEE
T ss_pred             ---------------------------------------------------------------------EEEEeCCCeEE
Confidence                                                                                 11335678999


Q ss_pred             EEECCC-Cc--EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          353 VKDFVT-RA--IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       353 IwDl~s-~~--~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      +||+.+ +.  .......|..+|.+++|+| +|.+|++++.+| .|+|||+...      +..     .....++.+...
T Consensus       174 i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~i~~~~~~------~~~-----~~~~~~~~~~~~  241 (342)
T 1yfq_A          174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG-RVAVEFFDDQ------GDD-----YNSSKRFAFRCH  241 (342)
T ss_dssp             EEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-EEEEEECCTT------CCS-----TTCTTCEEEECC
T ss_pred             EEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC-cEEEEEEcCC------Ccc-----cccccceeeecc
Confidence            999998 54  3345567899999999999 999999999966 5999998542      000     000123334321


Q ss_pred             c-------ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255          429 I-------TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       429 ~-------~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h  472 (765)
                      .       +...|.+++|+||+++|++++.||+|+|||+........+..|
T Consensus       242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence            1       1237999999999999999999999999999865433334443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.4e-19  Score=220.60  Aligned_cols=122  Identities=16%  Similarity=0.098  Sum_probs=91.2

Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCC---------------------------------------------cEE
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---------------------------------------------AII  362 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~---------------------------------------------~~i  362 (765)
                      .+.++++++.    ++.+..||+|+|||+.++                                             +++
T Consensus       493 svafspdg~~----LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  568 (902)
T 2oaj_A          493 KISFAAETLE----LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS  568 (902)
T ss_dssp             EEEEETTTTE----EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE
T ss_pred             EEEecCCCCe----EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee
Confidence            3445555443    557889999999999766                                             247


Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE--EEe---cccccccEEEE
Q 004255          363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY--KLH---RGITSATIQDI  437 (765)
Q Consensus       363 ~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~--~l~---rG~~~a~I~sl  437 (765)
                      ..+.+|.++|++|+||||| +||+|+.|+ +|+|||+..       +          ..++  .++   .| +...|++|
T Consensus       569 ~~l~~h~~~V~svafSpdG-~lAsgs~D~-tv~lwd~~~-------~----------~~~~~~~~~~~~~g-h~~~V~sv  628 (902)
T 2oaj_A          569 TAVHANKGKTSAINNSNIG-FVGIAYAAG-SLMLIDRRG-------P----------AIIYMENIREISGA-QSACVTCI  628 (902)
T ss_dssp             EEECCCSCSEEEEEECBTS-EEEEEETTS-EEEEEETTT-------T----------EEEEEEEGGGTCSS-CCCCEEEE
T ss_pred             EEEEcCCCcEEEEEecCCc-EEEEEeCCC-cEEEEECCC-------C----------eEEEEeehhHhccc-cccceEEE
Confidence            7889999999999999999 999999965 599999854       1          2333  221   13 34579999


Q ss_pred             EEc-----cCC---CEEEEEeCCCcEEEEeCCC---CCCCccccccc
Q 004255          438 CFS-----HYS---QWIAIVSSKGTCHVFVLSP---FGGDSGFQTLS  473 (765)
Q Consensus       438 aFS-----pDg---~~Las~S~dgTVhIwdl~~---~gg~~~~~~h~  473 (765)
                      +||     |||   ++|++++.|+||++||+.+   ......+..|.
T Consensus       629 ~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~  675 (902)
T 2oaj_A          629 EFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDIT  675 (902)
T ss_dssp             EEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             EEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCce
Confidence            999     885   8999999999999999932   22234455554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.85  E-value=1.2e-19  Score=197.87  Aligned_cols=228  Identities=14%  Similarity=0.105  Sum_probs=163.1

Q ss_pred             EEEEEecCc-EEEEEccCCCc---ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           77 VLLLGYQNG-FQVLDVEDASN---FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        77 vL~~G~~~G-~qVWdv~~~g~---~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      +++.|+.+| |+|||++..+.   ....+..|.++|..+++.|.            ...+|++.+.              
T Consensus        49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~------------~~~~l~s~s~--------------  102 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH------------NDNVIASGSE--------------  102 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT------------CTTEEEEEET--------------
T ss_pred             EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC------------CCCEEEEEeC--------------
Confidence            444456555 99999966543   33457789999999999972            1236665321              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCC-------eEEEEEeC-CCCEEEEEecC---CeEEEEe-CCeEEEEECCC
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-------CYEHVLRF-RSSVCMVRCSP---RIVAVGL-ATQIYCFDALT  220 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg-------~~v~tL~~-~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t  220 (765)
                                         +++|+|||+.++       +.+..+.. ...|.+|++++   ++|+++. ++.|++||+.+
T Consensus       103 -------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  163 (402)
T 2aq5_A          103 -------------------DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT  163 (402)
T ss_dssp             -------------------TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT
T ss_pred             -------------------CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC
Confidence                               368999999988       66778875 46999999997   3677655 56799999999


Q ss_pred             CceeEEE--EecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeeh
Q 004255          221 LENKFSV--LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA  298 (765)
Q Consensus       221 ~~~l~tl--~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a  298 (765)
                      ++.+.++  ..|..+             ...++++|       +.                           .       
T Consensus       164 ~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~---------------------------~-------  189 (402)
T 2aq5_A          164 GAAVLTLGPDVHPDT-------------IYSVDWSR-------DG---------------------------A-------  189 (402)
T ss_dssp             TEEEEEECTTTCCSC-------------EEEEEECT-------TS---------------------------S-------
T ss_pred             CCccEEEecCCCCCc-------------eEEEEECC-------CC---------------------------C-------
Confidence            9888777  344331             12333322       10                           0       


Q ss_pred             hhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe-ccCCCC-eEEEE
Q 004255          299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHTSP-ISALC  376 (765)
Q Consensus       299 ~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~-~aH~~~-IsaLa  376 (765)
                                                                .++.+..||.|+|||+.+++.+..+ .+|... +.+++
T Consensus       190 ------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (402)
T 2aq5_A          190 ------------------------------------------LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV  227 (402)
T ss_dssp             ------------------------------------------CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred             ------------------------------------------EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence                                                      0113456899999999999999999 799876 89999


Q ss_pred             ECCCCCEEEEE---EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE-EeCC
Q 004255          377 FDPSGTLLVTA---SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI-VSSK  452 (765)
Q Consensus       377 FSpdG~lLATa---S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las-~S~d  452 (765)
                      |+|+|.+|+++   +.++ .|+|||+...       .       .......+  + +...|.+++|+||+++|++ ++.|
T Consensus       228 ~~~~~~~l~~g~~~~~d~-~i~iwd~~~~-------~-------~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~g~~d  289 (402)
T 2aq5_A          228 FVSEGKILTTGFSRMSER-QVALWDTKHL-------E-------EPLSLQEL--D-TSSGVLLPFFDPDTNIVYLCGKGD  289 (402)
T ss_dssp             ECSTTEEEEEEECTTCCE-EEEEEETTBC-------S-------SCSEEEEC--C-CCSSCEEEEEETTTTEEEEEETTC
T ss_pred             EcCCCcEEEEeccCCCCc-eEEEEcCccc-------c-------CCceEEec--c-CCCceeEEEEcCCCCEEEEEEcCC
Confidence            99999999999   5644 6999999651       1       00122222  1 2345899999999999975 5579


Q ss_pred             CcEEEEeCCCC
Q 004255          453 GTCHVFVLSPF  463 (765)
Q Consensus       453 gTVhIwdl~~~  463 (765)
                      |+|+||++...
T Consensus       290 g~i~i~d~~~~  300 (402)
T 2aq5_A          290 SSIRYFEITSE  300 (402)
T ss_dssp             SCEEEEEECSS
T ss_pred             CeEEEEEecCC
Confidence            99999999764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.84  E-value=5.9e-20  Score=228.37  Aligned_cols=243  Identities=13%  Similarity=0.178  Sum_probs=177.5

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .++.|++|..+| +++||+. .+.....+..|.++|..+++.|+.             .+|++ ++              
T Consensus       972 ~g~~l~~g~~~g~i~i~d~~-~~~~~~~~~~h~~~v~~l~~s~dg-------------~~l~s-~~-------------- 1022 (1249)
T 3sfz_A          972 HLEYVAFGDEDGAIKIIELP-NNRVFSSGVGHKKAVRHIQFTADG-------------KTLIS-SS-------------- 1022 (1249)
T ss_dssp             TSSEEEEEETTSCCEEEETT-TTSCEEECCCCSSCCCCEEECSSS-------------SCEEE-EC--------------
T ss_pred             CCCEEEEEcCCCCEEEEEcC-CCceeeecccCCCceEEEEECCCC-------------CEEEE-Ec--------------
Confidence            366888888877 9999995 567777888999999999998752             35554 22              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEec
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTY  230 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~  230 (765)
                                        .+++|++||+.+++.+....+...|.++.+++  ++++++.++.|++||+.+++...++..|
T Consensus      1023 ------------------~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 1084 (1249)
T 3sfz_A         1023 ------------------EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1084 (1249)
T ss_dssp             ------------------SSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECC
T ss_pred             ------------------CCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEccc
Confidence                              13689999999999887666778999999987  4555566788999999999988888766


Q ss_pred             CCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccc
Q 004255          231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS  310 (765)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~  310 (765)
                      ..+             ...++++|       +.                           .                   
T Consensus      1085 ~~~-------------v~~~~~s~-------d~---------------------------~------------------- 1098 (1249)
T 3sfz_A         1085 QGT-------------VLSCAISS-------DA---------------------------T------------------- 1098 (1249)
T ss_dssp             SSC-------------CCCEEECS-------SS---------------------------S-------------------
T ss_pred             CCc-------------EEEEEECC-------CC---------------------------C-------------------
Confidence            542             22344432       10                           0                   


Q ss_pred             eeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 004255          311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY  390 (765)
Q Consensus       311 ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d  390 (765)
                                                    .++.++.||+|+|||+.+++.+..+.+|..+|.+++|+|||++|||++.|
T Consensus      1099 ------------------------------~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A         1099 ------------------------------KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp             ------------------------------SCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ------------------------------EEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence                                          01234568899999999999999999999999999999999999999997


Q ss_pred             CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccc
Q 004255          391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ  470 (765)
Q Consensus       391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~  470 (765)
                      |+ |+|||+.+....       ....  .........+ +...|++++|||||++|++++  |+|++||+........+.
T Consensus      1149 g~-i~vwd~~~~~~~-------~~~~--~~~~~~~~~~-~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~ 1215 (1249)
T 3sfz_A         1149 GE-IRIWNVSDGQLL-------HSCA--PISVEEGTAT-HGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY 1215 (1249)
T ss_dssp             SC-CCEEESSSSCCC-------CCCC--CCC--------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC
T ss_pred             CE-EEEEECCCCceE-------EEec--cccccccccc-cCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee
Confidence            76 999999652100       0000  0000011112 335699999999999999886  899999998755544444


Q ss_pred             cc
Q 004255          471 TL  472 (765)
Q Consensus       471 ~h  472 (765)
                      .|
T Consensus      1216 ~~ 1217 (1249)
T 3sfz_A         1216 TN 1217 (1249)
T ss_dssp             CS
T ss_pred             cc
Confidence            44

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.6e-19  Score=191.61  Aligned_cols=101  Identities=12%  Similarity=0.149  Sum_probs=77.2

Q ss_pred             cCCCCeEEEEECCCCcEE-EEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          345 MDNAGIVVVKDFVTRAII-SQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       345 ~~~dG~V~IwDl~s~~~i-~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      +..||.|+|||+.+++.+ ..|.+ |..+|.+|+|+|+|.+|++++. + .|+|||++...     .  .       ..+
T Consensus       188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~~-----~--~-------~~~  251 (343)
T 3lrv_A          188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKDV-----G--T-------LAY  251 (343)
T ss_dssp             ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSST-----T--C-------BSS
T ss_pred             EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCCC-----c--c-------eee
Confidence            456899999999999887 88998 9999999999999999999995 6 69999996521     0  0       000


Q ss_pred             EEEecccccccE--EEEEEccCCCEEEEEeC-CCcEEEEeCCCC
Q 004255          423 YKLHRGITSATI--QDICFSHYSQWIAIVSS-KGTCHVFVLSPF  463 (765)
Q Consensus       423 ~~l~rG~~~a~I--~slaFSpDg~~Las~S~-dgTVhIwdl~~~  463 (765)
                      ..+. + +...+  .+++|+|||++|++++. |++++||++...
T Consensus       252 ~~~~-~-~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          252 PTYT-I-PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             CCCB-C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cccc-c-ccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            0000 0 00112  47999999999999999 999999999754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.2e-19  Score=214.17  Aligned_cols=264  Identities=11%  Similarity=0.117  Sum_probs=178.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~-~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..+|++.|..+.|+.       .++.|++|..+| ++|||+.. .+.....+..|.++|.++++.|++           .
T Consensus         5 l~gH~~~V~~l~~s~-------dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-----------~   66 (753)
T 3jro_A            5 ANAHNELIHDAVLDY-------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F   66 (753)
T ss_dssp             ---CCCCEEEECCCS-------SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-----------S
T ss_pred             cccCcceeEEEEECC-------CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-----------C
Confidence            457888899888865       245777887766 99999963 345566788899999999998642           1


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCCEEEEEecCC---
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSPR---  203 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~-~s~V~sV~~s~~---  203 (765)
                      ..+|++++.                                 +++|++||+.+++  .+..+.. ...|.++++++.   
T Consensus        67 ~~~l~s~s~---------------------------------Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~  113 (753)
T 3jro_A           67 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG  113 (753)
T ss_dssp             CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred             CCEEEEEeC---------------------------------CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC
Confidence            236665332                                 3689999999997  5666654 469999999863   


Q ss_pred             -eEEEEe-CCeEEEEECCCCce--eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCC
Q 004255          204 -IVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP  279 (765)
Q Consensus       204 -~LaV~~-~~~I~iwD~~t~~~--l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~  279 (765)
                       +|+++. ++.|++||+.+...  ...+..|+.+             ...++++|..+...+..                
T Consensus       114 ~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~-------------v~~l~~~p~~~~~~~~~----------------  164 (753)
T 3jro_A          114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEEDGEH----------------  164 (753)
T ss_dssp             SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC-------------EEEEEECCCC-----------------------
T ss_pred             CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc-------------eEEEEecCccccccccc----------------
Confidence             666655 56899999988743  2333344331             22334433111100000                


Q ss_pred             CCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 004255          280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR  359 (765)
Q Consensus       280 ~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~  359 (765)
                                                                        ...+    .+..++.+..||.|+|||+.++
T Consensus       165 --------------------------------------------------~~~~----d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          165 --------------------------------------------------NGTK----ESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             ----------------------------------------------------CG----GGCCEEEEETTSCEEEEEEETT
T ss_pred             --------------------------------------------------ccCC----CCCEEEEEECCCeEEEEeccCC
Confidence                                                              0000    0011335678999999999877


Q ss_pred             ----cEEEEeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 004255          360 ----AIISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA  432 (765)
Q Consensus       360 ----~~i~~~~aH~~~IsaLaFSpd---G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a  432 (765)
                          ..+..+.+|..+|.+++|+|+   |.+|++++.||. |+|||+....     +.       ....+..  ...+..
T Consensus       191 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~-----~~-------~~~~~~~--~~~~~~  255 (753)
T 3jro_A          191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----GP-------WKKTLLK--EEKFPD  255 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSS-----SC-------CBCCBSS--SSCCSS
T ss_pred             cccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCC-----Cc-------ceeEEec--cCCCCC
Confidence                567788999999999999999   999999999775 9999986520     00       0001111  112345


Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       433 ~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      .|++++|+|||++|++++.||+|+||++...+
T Consensus       256 ~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            69999999999999999999999999998644

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.83  E-value=7.5e-19  Score=184.68  Aligned_cols=207  Identities=14%  Similarity=0.172  Sum_probs=146.2

Q ss_pred             eeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEE
Q 004255          100 LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYS  179 (765)
Q Consensus       100 lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWd  179 (765)
                      ++..|.++|..++|.|+.             .+||+.+.                                 +++|+|||
T Consensus         4 ~~~~h~~~V~~~~~s~~g-------------~~las~s~---------------------------------D~~v~iw~   37 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYG-------------KRMATCSS---------------------------------DKTIKIFE   37 (297)
T ss_dssp             ECCSCSSCEEEEEECTTS-------------SEEEEEET---------------------------------TSCEEEEE
T ss_pred             eccCCcCceEEEEECCCC-------------CEEEEEeC---------------------------------CCEEEEEe
Confidence            567889999999998742             36665321                                 36899999


Q ss_pred             CCC--CeEEEEEeCC-CCEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCccccccccce
Q 004255          180 FQS--HCYEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGYGP  249 (765)
Q Consensus       180 lkt--g~~v~tL~~~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~t~~--~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (765)
                      +.+  ++++.+|..+ .+|++|+|++    ++|+++. +++|++||+.+++  .+.++..|..+             ...
T Consensus        38 ~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------------v~~  104 (297)
T 2pm7_B           38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS-------------VNS  104 (297)
T ss_dssp             BCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC-------------EEE
T ss_pred             cCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc-------------eeE
Confidence            974  4678888765 6999999963    5777765 5689999998764  33444334331             123


Q ss_pred             eEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCc
Q 004255          250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV  329 (765)
Q Consensus       250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~  329 (765)
                      ++++|       +.                          .+.                                     
T Consensus       105 v~~~p-------~~--------------------------~g~-------------------------------------  114 (297)
T 2pm7_B          105 VQWAP-------HE--------------------------YGP-------------------------------------  114 (297)
T ss_dssp             EEECC-------GG--------------------------GCS-------------------------------------
T ss_pred             EEeCc-------CC--------------------------CCc-------------------------------------
Confidence            33322       10                          000                                     


Q ss_pred             cCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECCC-------------CCEEEEEEcCCCEE
Q 004255          330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPS-------------GTLLVTASVYGNNI  394 (765)
Q Consensus       330 s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~aH~~~IsaLaFSpd-------------G~lLATaS~dGt~I  394 (765)
                                 .++.+..||.|+|||+.++.  ....+.+|...|.+++|+|+             +++||||+.|++ |
T Consensus       115 -----------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~-v  182 (297)
T 2pm7_B          115 -----------MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-V  182 (297)
T ss_dssp             -----------EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSC-E
T ss_pred             -----------EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCc-E
Confidence                       01234578999999998763  24568899999999999997             579999999775 9


Q ss_pred             EEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 004255          395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       395 rVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg---~~Las~S~dgTVhIwdl~~  462 (765)
                      +|||+..       +.      .....+..+ .| |...|.+|+|+||+   ++||+++.|++|+|||+..
T Consensus       183 ~lwd~~~-------~~------~~~~~~~~l-~~-H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          183 KIWKYNS-------DA------QTYVLESTL-EG-HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEEEEET-------TT------TEEEEEEEE-CC-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             EEEEEcC-------CC------ceEEEEEEe-cC-CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            9999854       10      001133445 35 34579999999995   8999999999999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.83  E-value=8.9e-19  Score=193.99  Aligned_cols=239  Identities=13%  Similarity=0.173  Sum_probs=165.1

Q ss_pred             CeEEEEEecCc-EEEEEccCC---------CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDA---------SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTL  144 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~---------g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~  144 (765)
                      +.+|++|..+| ++|||+...         ......+..|.+.|.+|.+.|+.            ..+|++ ++      
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------------~~~l~s-~~------  201 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL------------NGYLLS-AS------  201 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS------------TTEEEE-EC------
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC------------CCeEEE-Ee------
Confidence            57899998877 999999652         34556677888999999998741            115544 21      


Q ss_pred             CCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-------EEEEe-CCCCEEEEEecC---CeEEEEe-CCe
Q 004255          145 APGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-------EHVLR-FRSSVCMVRCSP---RIVAVGL-ATQ  212 (765)
Q Consensus       145 ~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-------v~tL~-~~s~V~sV~~s~---~~LaV~~-~~~  212 (765)
                                                .+++|++||+.++..       ...+. +...|.+|++++   .+|+++. ++.
T Consensus       202 --------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~  255 (430)
T 2xyi_A          202 --------------------------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK  255 (430)
T ss_dssp             --------------------------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             --------------------------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence                                      136899999987432       33443 346899999986   5776665 568


Q ss_pred             EEEEECCCC---ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCC
Q 004255          213 IYCFDALTL---ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG  289 (765)
Q Consensus       213 I~iwD~~t~---~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~  289 (765)
                      |++||+.+.   +....+..|..+             ...++++|       ..                          
T Consensus       256 i~i~d~~~~~~~~~~~~~~~~~~~-------------v~~i~~~p-------~~--------------------------  289 (430)
T 2xyi_A          256 LMIWDTRNNNTSKPSHTVDAHTAE-------------VNCLSFNP-------YS--------------------------  289 (430)
T ss_dssp             EEEEETTCSCSSSCSEEEECCSSC-------------EEEEEECS-------SC--------------------------
T ss_pred             EEEEECCCCCCCcceeEeecCCCC-------------eEEEEeCC-------CC--------------------------
Confidence            999999987   455555544331             12333322       10                          


Q ss_pred             CCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcEEEEeccC
Q 004255          290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAH  368 (765)
Q Consensus       290 ~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s-~~~i~~~~aH  368 (765)
                       ..                                                .++.+..||.|+|||+.+ ...+..+.+|
T Consensus       290 -~~------------------------------------------------~l~tg~~dg~v~vwd~~~~~~~~~~~~~h  320 (430)
T 2xyi_A          290 -EF------------------------------------------------ILATGSADKTVALWDLRNLKLKLHSFESH  320 (430)
T ss_dssp             -TT------------------------------------------------EEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred             -CC------------------------------------------------EEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence             00                                                012345689999999998 5678899999


Q ss_pred             CCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCcc--c-cCCcceEEEEEecccccccEEEEEEccCCC
Q 004255          369 TSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKY--D-WNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (765)
Q Consensus       369 ~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~--~-~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (765)
                      ..+|.+|+|+|+|. +||+++.||. |+|||+...      +....  + -......++.+ .| +...|.+++|+|+++
T Consensus       321 ~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~p~~~  391 (430)
T 2xyi_A          321 KDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKI------GEEQSTEDAEDGPPELLFIH-GG-HTAKISDFSWNPNEP  391 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGT------TCCCCHHHHHHCCTTEEEEC-CC-CSSCEEEEEECSSST
T ss_pred             CCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCC------ccccCccccccCCcceEEEc-CC-CCCCceEEEECCCCC
Confidence            99999999999995 7999999775 999999641      10000  0 00001344443 34 345799999999999


Q ss_pred             -EEEEEeCCCcEEEEeCCC
Q 004255          445 -WIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       445 -~Las~S~dgTVhIwdl~~  462 (765)
                       +|++++.||+|+||++..
T Consensus       392 ~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          392 WIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             TEEEEEETTSEEEEEEECH
T ss_pred             CEEEEEECCCCEEEeEccc
Confidence             899999999999999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.3e-18  Score=193.27  Aligned_cols=176  Identities=13%  Similarity=0.179  Sum_probs=129.0

Q ss_pred             CEEEEEECC--CCeEEEEEe---CCCCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeE----EEEecCCcccCCCCc
Q 004255          173 TAVRFYSFQ--SHCYEHVLR---FRSSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKF----SVLTYPVPQLAGQGA  240 (765)
Q Consensus       173 ~tV~lWdlk--tg~~v~tL~---~~s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~----tl~t~p~p~~~~~~~  240 (765)
                      ++|+|||+.  +++.+..+.   +...|.++++++  ++|+++.. +.|++||+.+++...    .+..|..+       
T Consensus       125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~-------  197 (450)
T 2vdu_B          125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM-------  197 (450)
T ss_dssp             TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSC-------
T ss_pred             CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCc-------
Confidence            689999999  899888884   457899999987  57777654 679999998876433    33333321       


Q ss_pred             cccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccccc
Q 004255          241 VGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL  320 (765)
Q Consensus       241 ~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~  320 (765)
                            ...++++|       +.                         .++.                            
T Consensus       198 ------v~~~~~sp-------~~-------------------------~~~~----------------------------  211 (450)
T 2vdu_B          198 ------LTDVHLIK-------DS-------------------------DGHQ----------------------------  211 (450)
T ss_dssp             ------EEEEEEEE-------CT-------------------------TSCE----------------------------
T ss_pred             ------eEEEEEcC-------CC-------------------------CCCc----------------------------
Confidence                  12233322       10                         0000                            


Q ss_pred             CCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       321 ~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~-~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                                          .+++++.||.|+|||+.+++.+.. +.+|..+|.+++|+ +|++|++++.|+ .|+|||+
T Consensus       212 --------------------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~-~v~vwd~  269 (450)
T 2vdu_B          212 --------------------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD-KIFAWDW  269 (450)
T ss_dssp             --------------------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS-EEEEEET
T ss_pred             --------------------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC-eEEEEEC
Confidence                                012345688999999999988887 66999999999999 999999999966 5999999


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecc-----------------------cccccEEEEEEccCCCEEEEEe-CCCcE
Q 004255          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRG-----------------------ITSATIQDICFSHYSQWIAIVS-SKGTC  455 (765)
Q Consensus       400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG-----------------------~~~a~I~slaFSpDg~~Las~S-~dgTV  455 (765)
                      ..       |          ..+..+..+                       .....|.+|+|+||+++|++++ .|++|
T Consensus       270 ~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i  332 (450)
T 2vdu_B          270 KT-------G----------KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI  332 (450)
T ss_dssp             TT-------C----------CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEE
T ss_pred             CC-------C----------cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeE
Confidence            65       3          244444311                       1123589999999999999999 89999


Q ss_pred             EEEeC
Q 004255          456 HVFVL  460 (765)
Q Consensus       456 hIwdl  460 (765)
                      +||++
T Consensus       333 ~iw~~  337 (450)
T 2vdu_B          333 IILEM  337 (450)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99999

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.83  E-value=8.2e-19  Score=191.29  Aligned_cols=249  Identities=10%  Similarity=0.026  Sum_probs=175.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------cceEeeeeccCCEEEEEEecCCCCCCCCC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCE  124 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g------~~~ells~~dg~V~~v~~lP~p~~~~~~d  124 (765)
                      ..++++.|..+.|...      .+++|++|..+| ++|||+...+      +....+..|.++|.++++.|+.       
T Consensus        77 ~~~h~~~V~~~~~~p~------~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-------  143 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPH------NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA-------  143 (402)
T ss_dssp             BCCCSSCEEEEEECTT------CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-------
T ss_pred             EecCCCCEEEEEeCCC------CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC-------
Confidence            3457888998888652      256888888877 9999996532      4566788899999999999741       


Q ss_pred             CccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE--e-CCCCEEEEEec
Q 004255          125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL--R-FRSSVCMVRCS  201 (765)
Q Consensus       125 ~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL--~-~~s~V~sV~~s  201 (765)
                           ..+|++.+.                                 +++|++||+++++.+.++  . +...|.+++++
T Consensus       144 -----~~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  185 (402)
T 2aq5_A          144 -----QNVLLSAGC---------------------------------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS  185 (402)
T ss_dssp             -----TTEEEEEET---------------------------------TSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred             -----CCEEEEEcC---------------------------------CCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence                 126654221                                 368999999999999999  4 45689999998


Q ss_pred             C--CeEEEEe-CCeEEEEECCCCceeEEE-EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCC
Q 004255          202 P--RIVAVGL-ATQIYCFDALTLENKFSV-LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQ  275 (765)
Q Consensus       202 ~--~~LaV~~-~~~I~iwD~~t~~~l~tl-~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~  275 (765)
                      +  ++|+++. ++.|++||+.+++.+.++ ..|...            ....++++|  ++|+++.              
T Consensus       186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~g~--------------  239 (402)
T 2aq5_A          186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT------------RPVHAVFVSEGKILTTGF--------------  239 (402)
T ss_dssp             TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS------------SCCEEEECSTTEEEEEEE--------------
T ss_pred             CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC------------cceEEEEcCCCcEEEEec--------------
Confidence            6  5676655 668999999999888877 344331            012233432  1221111              


Q ss_pred             CCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEE
Q 004255          276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD  355 (765)
Q Consensus       276 ~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwD  355 (765)
                                                                                          ....+|.|+|||
T Consensus       240 --------------------------------------------------------------------~~~~d~~i~iwd  251 (402)
T 2aq5_A          240 --------------------------------------------------------------------SRMSERQVALWD  251 (402)
T ss_dssp             --------------------------------------------------------------------CTTCCEEEEEEE
T ss_pred             --------------------------------------------------------------------cCCCCceEEEEc
Confidence                                                                                114578999999


Q ss_pred             CCCCcE-EEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 004255          356 FVTRAI-ISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT  433 (765)
Q Consensus       356 l~s~~~-i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~  433 (765)
                      +.+++. +..+. .|...|.+++|+|+|.+|++++..++.|+|||+..       +.         ..+..+....+...
T Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~-------~~---------~~~~~l~~~~~~~~  315 (402)
T 2aq5_A          252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS-------EA---------PFLHYLSMFSSKES  315 (402)
T ss_dssp             TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS-------ST---------TCEEEEEEECCSSC
T ss_pred             CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC-------CC---------cceEeecccccCCc
Confidence            998764 33333 57788999999999999976654344599999965       20         11333332223457


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          434 IQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       434 I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      |.+++|+||+.++++  .++++++|++...
T Consensus       316 v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          316 QRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             CSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             ccceEEeccccccee--cceeEEEEEcCCC
Confidence            999999999998864  6779999999863

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.83  E-value=9.5e-19  Score=192.04  Aligned_cols=268  Identities=11%  Similarity=0.089  Sum_probs=163.2

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEcc--CCCcceEeeeeccCCEEEEEEecCCCCCCCCC---Cccc
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVE--DASNFNELVSKRDGPVSFLQMQPFPVKDDGCE---GFRK  128 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~--~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d---~f~~  128 (765)
                      +...|..+.|..       .++.|++|..+| ++|||++  ..+++...+..+  .|+.+.+.|.+.......   .+..
T Consensus       110 h~~~v~~~~~~~-------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~  180 (437)
T 3gre_A          110 CSSTVTQITMIP-------NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFGKNEYAVRMRAFVNE  180 (437)
T ss_dssp             CSSCEEEEEECT-------TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred             CCCCEEEEEEeC-------CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcccccCceEEEEEEcC
Confidence            556677777753       356788888776 9999995  345555555444  455555544210000000   0112


Q ss_pred             cCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCCEEEEEecC--C
Q 004255          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSP--R  203 (765)
Q Consensus       129 srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~---~s~V~sV~~s~--~  203 (765)
                      ...+|++.+                                 .+++|++||+++++++.++..   ...|.++++++  +
T Consensus       181 ~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~  227 (437)
T 3gre_A          181 EKSLLVALT---------------------------------NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC  227 (437)
T ss_dssp             SCEEEEEEE---------------------------------TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC
T ss_pred             CCCEEEEEe---------------------------------CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC
Confidence            233554322                                 136999999999999999986   47999999987  6


Q ss_pred             eEEEEe-CCeEEEEECCCCceeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCC
Q 004255          204 IVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       204 ~LaV~~-~~~I~iwD~~t~~~l~tl~-t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                      +|+++. ++.|++||+.+++++.++. .+..+             ...+++.|.                          
T Consensus       228 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------v~~~~~~~~--------------------------  268 (437)
T 3gre_A          228 VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP-------------ITHVEVCQF--------------------------  268 (437)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEBCTTCEE-------------EEEEEECTT--------------------------
T ss_pred             EEEEEcCCCeEEEEEcCCccEEEEEecCCCCc-------------eEEEEeccc--------------------------
Confidence            777765 4579999999988777764 22211             122322210                          


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~  361 (765)
                          ++++ +                                                ..++.+..||.|+|||+.+++.
T Consensus       269 ----~s~~-~------------------------------------------------~~l~s~~~dg~i~iwd~~~~~~  295 (437)
T 3gre_A          269 ----YGKN-S------------------------------------------------VIVVGGSSKTFLTIWNFVKGHC  295 (437)
T ss_dssp             ----TCTT-E------------------------------------------------EEEEEESTTEEEEEEETTTTEE
T ss_pred             ----cCCC-c------------------------------------------------cEEEEEcCCCcEEEEEcCCCcE
Confidence                0000 0                                                0122456788899999988887


Q ss_pred             EEEecc--------------------------CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC-CCC---C-
Q 004255          362 ISQFKA--------------------------HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSG---N-  410 (765)
Q Consensus       362 i~~~~a--------------------------H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~-~sG---~-  410 (765)
                      +..+.+                          |..+|.+++|+ +|.+|++++.|| .|+|||+....... ..+   . 
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~~  373 (437)
T 3gre_A          296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS-SIVMFSLNELSSSKAVISPSRFS  373 (437)
T ss_dssp             EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT-EEEEEETTCGGGCEEEECC--CC
T ss_pred             EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC-eEEEEECCCcccceEEecccccC
Confidence            777764                          55568889999 789999999966 59999996521000 000   0 


Q ss_pred             Ccc---ccCCcceEEE-----------EEecccccccEEEEEEccC--CCEEEEEeCCCcEEEEe
Q 004255          411 HKY---DWNSSHVHLY-----------KLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       411 ~~~---~~~~s~~~l~-----------~l~rG~~~a~I~slaFSpD--g~~Las~S~dgTVhIwd  459 (765)
                      ...   ........+.           ....+ +...|.+|+|+++  +.+|++++.||+|+||+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          374 DVFIPTQVTANLTMLLRKMKRTSTHSVDDSLY-HHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ceEEEEEeecceEEEEEecccccccccCcccc-cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            000   0000000000           00011 3457999999998  88999999999999995

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.83  E-value=1.1e-18  Score=185.25  Aligned_cols=257  Identities=12%  Similarity=0.080  Sum_probs=165.7

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEe--eeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~el--ls~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..+.+.|.-+.|..       .++.|++|..+| ++|||++. +++...  +..|.+.|.++++.|+             
T Consensus        49 ~~h~~~v~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~-------------  107 (372)
T 1k8k_C           49 KEHNGQVTGVDWAP-------DSNRIVTCGTDRNAYVWTLKG-RTWKPTLVILRINRAARCVRWAPN-------------  107 (372)
T ss_dssp             ECCSSCEEEEEEET-------TTTEEEEEETTSCEEEEEEET-TEEEEEEECCCCSSCEEEEEECTT-------------
T ss_pred             cCCCCcccEEEEeC-------CCCEEEEEcCCCeEEEEECCC-CeeeeeEEeecCCCceeEEEECCC-------------
Confidence            45677788888865       245777777765 99999954 444333  3567889999999874             


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE---EEEEe--CCCCEEEEEecC--
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLR--FRSSVCMVRCSP--  202 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~---v~tL~--~~s~V~sV~~s~--  202 (765)
                      ..+|++.+.                                 +++|++||+.+++.   ...+.  +...|.++++++  
T Consensus       108 ~~~l~~~~~---------------------------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C          108 EKKFAVGSG---------------------------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             SSEEEEEET---------------------------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             CCEEEEEeC---------------------------------CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence            236665331                                 25799999988763   33442  356899999987  


Q ss_pred             CeEEEEe-CCeEEEEECCCCc------------------eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCC
Q 004255          203 RIVAVGL-ATQIYCFDALTLE------------------NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNT  263 (765)
Q Consensus       203 ~~LaV~~-~~~I~iwD~~t~~------------------~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~  263 (765)
                      ++|+++. ++.|++||+....                  .+..+..|..+             ...+++           
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------v~~~~~-----------  210 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW-------------VHGVCF-----------  210 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-------------EEEEEE-----------
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe-------------EEEEEE-----------
Confidence            5777765 5689999976432                  11111111100             000111           


Q ss_pred             ceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCcccccccccc
Q 004255          264 LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA  343 (765)
Q Consensus       264 ~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~  343 (765)
                                                                                          +++++    .++
T Consensus       211 --------------------------------------------------------------------~~~~~----~l~  218 (372)
T 1k8k_C          211 --------------------------------------------------------------------SANGS----RVA  218 (372)
T ss_dssp             --------------------------------------------------------------------CSSSS----EEE
T ss_pred             --------------------------------------------------------------------CCCCC----EEE
Confidence                                                                                11111    123


Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC--Cc---ccCCCCCC-------
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP--SC---MRSGSGNH-------  411 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~--~~---~~~~sG~~-------  411 (765)
                      .+..||.|+|||+.+++.+..+..|..+|.+++|+|+|.+|+++ .||. |+|||+..  ..   ........       
T Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (372)
T 1k8k_C          219 WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGL  296 (372)
T ss_dssp             EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEETTTTEEEECCCCCCC--------
T ss_pred             EEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccCcCceEEEeeccCccccchhhhc
Confidence            45678999999999999999999999999999999999999988 5465 99999864  10   00000000       


Q ss_pred             --cccc---CCcceEE------EEEecccccccEEEEEEc-cCC---CEEEEEeCCCcEEEEeCCC
Q 004255          412 --KYDW---NSSHVHL------YKLHRGITSATIQDICFS-HYS---QWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       412 --~~~~---~~s~~~l------~~l~rG~~~a~I~slaFS-pDg---~~Las~S~dgTVhIwdl~~  462 (765)
                        ...+   +......      ..+..|+ ...|.+++|+ +||   ++|++++.||+|+||++..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          297 TARERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             CHHHHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             chhhhhhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence              0000   0000111      3333353 4579999965 777   9999999999999999865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.83  E-value=3.3e-18  Score=184.43  Aligned_cols=222  Identities=11%  Similarity=0.085  Sum_probs=160.9

Q ss_pred             CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 004255           95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA  174 (765)
Q Consensus        95 g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t  174 (765)
                      ..+...+..|.+.|.++++.|+.            ..+|++.+.                                 +++
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~------------~~~l~s~~~---------------------------------dg~   97 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTH------------PTTVAVGSK---------------------------------GGD   97 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSC------------TTEEEEEEB---------------------------------TSC
T ss_pred             cceEEeccCCCCCEEEEEECCCC------------CCEEEEEcC---------------------------------CCe
Confidence            34556677889999999999741            136665321                                 368


Q ss_pred             EEEEECCCCeEEEEEe---CCCCEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255          175 VRFYSFQSHCYEHVLR---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       175 V~lWdlktg~~v~tL~---~~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      |+|||+.+++....+.   +...|.++++++   ++|+++. ++.|++||+.+ +.+..+..+....          ...
T Consensus        98 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~----------~~v  166 (383)
T 3ei3_B           98 IILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWD----------YWY  166 (383)
T ss_dssp             EEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSS----------CCE
T ss_pred             EEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCC----------CCe
Confidence            9999999999888886   457999999987   5677655 56899999986 4555555433200          011


Q ss_pred             ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (765)
Q Consensus       248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~  327 (765)
                      ..++++|       +..                                                               
T Consensus       167 ~~~~~~~-------~~~---------------------------------------------------------------  176 (383)
T 3ei3_B          167 CCVDVSV-------SRQ---------------------------------------------------------------  176 (383)
T ss_dssp             EEEEEET-------TTT---------------------------------------------------------------
T ss_pred             EEEEECC-------CCC---------------------------------------------------------------
Confidence            2233322       110                                                               


Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccC
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRS  406 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~  406 (765)
                                   .++.+..||.|++||+ +++.+..+.+|..+|.+++|+|+|. +|++++.|+ .|+|||+....   
T Consensus       177 -------------~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~---  238 (383)
T 3ei3_B          177 -------------MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIK---  238 (383)
T ss_dssp             -------------EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCC---
T ss_pred             -------------EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCC---
Confidence                         0123456899999999 5788899999999999999999999 999999966 59999996410   


Q ss_pred             CCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                                .....+..+  + +...|.+++|+| |+++|++++.|++|+|||+........+..|.
T Consensus       239 ----------~~~~~~~~~--~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  293 (383)
T 3ei3_B          239 ----------DKNSYIAEM--P-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP  293 (383)
T ss_dssp             ----------STTCEEEEE--E-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred             ----------cccceEEEe--c-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence                      001344444  2 345799999999 99999999999999999999877666666664

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.82  E-value=1.8e-19  Score=199.60  Aligned_cols=220  Identities=14%  Similarity=0.154  Sum_probs=151.1

Q ss_pred             ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (765)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~  176 (765)
                      +......|+..|.+|+|.|.            ...+||+.+                                 .+++|+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~------------~~~~lasGs---------------------------------~dg~i~  145 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPT------------HPSTVAVGS---------------------------------KGGDIM  145 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSS------------CTTCEEEEE---------------------------------TTSCEE
T ss_pred             ecccCCCCCCCEEEEEEeCC------------CCCEEEEEe---------------------------------CCCEEE
Confidence            34556778889999999973            112666522                                 136899


Q ss_pred             EEECCCCeEEEEEeC---CCCEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255          177 FYSFQSHCYEHVLRF---RSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (765)
Q Consensus       177 lWdlktg~~v~tL~~---~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (765)
                      |||+.+++....+.+   .+.|.+|+|+|   ++|+++. ++.|+|||+.+.. ...+..+...          ......
T Consensus       146 lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~----------~~~~~~  214 (435)
T 4e54_B          146 LWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTI----------NIWFCS  214 (435)
T ss_dssp             EECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSC----------SCCCCC
T ss_pred             EEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCC----------CccEEE
Confidence            999998876666653   46899999985   5777665 5689999998653 3333321110          000112


Q ss_pred             eEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCc
Q 004255          250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV  329 (765)
Q Consensus       250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~  329 (765)
                      +++++       +.                           .                                      
T Consensus       215 ~~~~~-------~~---------------------------~--------------------------------------  222 (435)
T 4e54_B          215 LDVSA-------SS---------------------------R--------------------------------------  222 (435)
T ss_dssp             EEEET-------TT---------------------------T--------------------------------------
T ss_pred             EEECC-------CC---------------------------C--------------------------------------
Confidence            22221       10                           0                                      


Q ss_pred             cCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCC
Q 004255          330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGS  408 (765)
Q Consensus       330 s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~s  408 (765)
                                 .++.++.||.|+|||+.. +.+..+.+|..+|.+|+|+|++. +|++++.|+ .|+|||+....     
T Consensus       223 -----------~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~-~v~iwd~~~~~-----  284 (435)
T 4e54_B          223 -----------MVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQ-TVKIWDLRQVR-----  284 (435)
T ss_dssp             -----------EEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS-BCCEEETTTCC-----
T ss_pred             -----------EEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcc-eeeEEeccccc-----
Confidence                       112346789999999864 56778999999999999999986 788999966 59999996521     


Q ss_pred             CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       409 G~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      ..         ..+. ...+ +...|++++|+|||++|++++.||+|+|||+........+..|.
T Consensus       285 ~~---------~~~~-~~~~-h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~  338 (435)
T 4e54_B          285 GK---------ASFL-YSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP  338 (435)
T ss_dssp             SS---------SCCS-BCCB-CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred             cc---------ceEE-Eeee-ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence            00         0111 1123 34579999999999999999999999999999877666666664

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.82  E-value=5.9e-19  Score=189.17  Aligned_cols=223  Identities=15%  Similarity=0.194  Sum_probs=161.9

Q ss_pred             cEEEEEccCCCcceEeeeeccCCEEEEEEec-CCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCC
Q 004255           85 GFQVLDVEDASNFNELVSKRDGPVSFLQMQP-FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDS  163 (765)
Q Consensus        85 G~qVWdv~~~g~~~ells~~dg~V~~v~~lP-~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~  163 (765)
                      .++||+++ .++..+++..|.++|.++++.| +             ..+||+.+.                         
T Consensus        24 ~~~v~~~~-~~~~~~~~~~h~~~v~~~~~s~~~-------------~~~l~~~~~-------------------------   64 (408)
T 4a11_B           24 TRRVLGLE-LNKDRDVERIHGGGINTLDIEPVE-------------GRYMLSGGS-------------------------   64 (408)
T ss_dssp             HHHHHTEE-ECTTEEECCCCSSCEEEEEECTTT-------------CCEEEEEET-------------------------
T ss_pred             cceeeccc-cCcceeeeeccCCcEEEEEEecCC-------------CCEEEEEcC-------------------------
Confidence            47888885 4667888999999999999997 4             236665321                         


Q ss_pred             CCCCCCCCCCEEEEEECCCCeEEEEEe--------------CCCCEEEEEecC---CeEEEEe-CCeEEEEECCCCceeE
Q 004255          164 QSGNCVNSPTAVRFYSFQSHCYEHVLR--------------FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKF  225 (765)
Q Consensus       164 ~~~~~~~~p~tV~lWdlktg~~v~tL~--------------~~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~l~  225 (765)
                              +++|++||+.+++....+.              +...|.++++++   ++|+++. ++.|++||+.+++...
T Consensus        65 --------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  136 (408)
T 4a11_B           65 --------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD  136 (408)
T ss_dssp             --------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE
T ss_pred             --------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce
Confidence                    3689999999987666554              557999999987   4676655 6789999999988766


Q ss_pred             EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (765)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l  305 (765)
                      .+.. +.+             ...+++.+       ..                        +. +.             
T Consensus       137 ~~~~-~~~-------------~~~~~~~~-------~~------------------------~~-~~-------------  157 (408)
T 4a11_B          137 VFNF-EET-------------VYSHHMSP-------VS------------------------TK-HC-------------  157 (408)
T ss_dssp             EEEC-SSC-------------EEEEEECS-------SC------------------------SS-CC-------------
T ss_pred             eccC-CCc-------------eeeeEeec-------CC------------------------CC-Cc-------------
Confidence            6542 211             11122211       00                        00 00             


Q ss_pred             hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EE
Q 004255          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LL  384 (765)
Q Consensus       306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~-lL  384 (765)
                                                         .++.+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|. +|
T Consensus       158 -----------------------------------~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll  202 (408)
T 4a11_B          158 -----------------------------------LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYIL  202 (408)
T ss_dssp             -----------------------------------EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEE
T ss_pred             -----------------------------------EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEE
Confidence                                               012345688999999999999999999999999999999999 69


Q ss_pred             EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-------------cccccccEEEEEEccCCCEEEEEeC
Q 004255          385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-------------RGITSATIQDICFSHYSQWIAIVSS  451 (765)
Q Consensus       385 ATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-------------rG~~~a~I~slaFSpDg~~Las~S~  451 (765)
                      ++++.||. |++||+....                ..+..+.             ...+...|.+++|+||+++|++++.
T Consensus       203 ~~~~~dg~-i~i~d~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          203 ATASADSR-VKLWDVRRAS----------------GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             EEEETTSC-EEEEETTCSS----------------CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEcCCCc-EEEEECCCCC----------------cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence            99999775 9999996521                0111110             0113356999999999999999999


Q ss_pred             CCcEEEEeCCCCCC
Q 004255          452 KGTCHVFVLSPFGG  465 (765)
Q Consensus       452 dgTVhIwdl~~~gg  465 (765)
                      ||+|++||+.....
T Consensus       266 dg~i~vwd~~~~~~  279 (408)
T 4a11_B          266 DNRMRLWNSSNGEN  279 (408)
T ss_dssp             TSCEEEEETTTCCB
T ss_pred             CCeEEEEECCCCcc
Confidence            99999999987543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.82  E-value=1.1e-18  Score=182.09  Aligned_cols=225  Identities=14%  Similarity=0.175  Sum_probs=158.9

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      +++.|+++..++ +.+|+.......... ..|.++|.++++.|+             ..+|++ ++              
T Consensus        20 dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~-------------~~~l~~-~~--------------   70 (337)
T 1gxr_A           20 DGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP-------------TRHVYT-GG--------------   70 (337)
T ss_dssp             SSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS-------------SSEEEE-EC--------------
T ss_pred             CCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC-------------CcEEEE-cC--------------
Confidence            466777776544 666655433323333 368889999999874             236654 22              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE---EEEEe---CCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCc-
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLR---FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE-  222 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~---v~tL~---~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~-  222 (765)
                                         +++|++||+.+++.   +..+.   +...|.++++++  ++|+++. ++.|++||+.+++ 
T Consensus        71 -------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  131 (337)
T 1gxr_A           71 -------------------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP  131 (337)
T ss_dssp             -------------------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred             -------------------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc
Confidence                               25899999987753   34443   456899999997  5677655 5689999999876 


Q ss_pred             -eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhh
Q 004255          223 -NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH  301 (765)
Q Consensus       223 -~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~  301 (765)
                       ....+..+..+             ...++++|       +.                           .          
T Consensus       132 ~~~~~~~~~~~~-------------i~~~~~~~-------~~---------------------------~----------  154 (337)
T 1gxr_A          132 RIKAELTSSAPA-------------CYALAISP-------DS---------------------------K----------  154 (337)
T ss_dssp             EEEEEEECSSSC-------------EEEEEECT-------TS---------------------------S----------
T ss_pred             ceeeecccCCCc-------------eEEEEECC-------CC---------------------------C----------
Confidence             33333333221             12233322       10                           0          


Q ss_pred             hhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 004255          302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG  381 (765)
Q Consensus       302 ~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG  381 (765)
                                                             .++.+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|
T Consensus       155 ---------------------------------------~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  195 (337)
T 1gxr_A          155 ---------------------------------------VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             ---------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             ---------------------------------------EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC
Confidence                                                   01123467899999999999999999999999999999999


Q ss_pred             CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      ++|++++.|| .|++||+..       +          ..+..+.   +...|.+++|+||+++|++++.|++|++|++.
T Consensus       196 ~~l~~~~~dg-~i~~~d~~~-------~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~  254 (337)
T 1gxr_A          196 TKLWTGGLDN-TVRSWDLRE-------G----------RQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN  254 (337)
T ss_dssp             SEEEEEETTS-EEEEEETTT-------T----------EEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CEEEEEecCC-cEEEEECCC-------C----------ceEeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence            9999999966 599999964       2          3444443   23569999999999999999999999999997


Q ss_pred             CC
Q 004255          462 PF  463 (765)
Q Consensus       462 ~~  463 (765)
                      ..
T Consensus       255 ~~  256 (337)
T 1gxr_A          255 KP  256 (337)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.82  E-value=2e-17  Score=178.18  Aligned_cols=223  Identities=15%  Similarity=0.098  Sum_probs=162.9

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      +.++++|..++ +++||++ .+++...+..+. .+.++++.|+             ...|++....              
T Consensus         2 ~~l~vs~~~d~~v~v~d~~-~~~~~~~~~~~~-~~~~~~~s~d-------------g~~l~~~~~~--------------   52 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVT-SNKVTATIPVGS-NPMGAVISPD-------------GTKVYVANAH--------------   52 (391)
T ss_dssp             EEEEEEETTTTEEEEEETT-TTEEEEEEECSS-SEEEEEECTT-------------SSEEEEEEGG--------------
T ss_pred             CEEEEEcCCCCEEEEEECC-CCeEEEEeecCC-CcceEEECCC-------------CCEEEEECCC--------------
Confidence            45788887765 9999995 567777776665 4889999874             2255443321              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEe
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~l~tl~t  229 (765)
                                        +++|++||+.+++.+..+..+..|.++++++  +.|+++.  ++.|++||+.+++.+..+..
T Consensus        53 ------------------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~  114 (391)
T 1l0q_A           53 ------------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT  114 (391)
T ss_dssp             ------------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ------------------CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence                              2689999999999999999988999999987  5565543  36899999999987776654


Q ss_pred             cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhc
Q 004255          230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA  307 (765)
Q Consensus       230 ~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~  307 (765)
                      +..              ...++++|  ++|++                                                
T Consensus       115 ~~~--------------~~~~~~s~dg~~l~~------------------------------------------------  132 (391)
T 1l0q_A          115 GKS--------------PLGLALSPDGKKLYV------------------------------------------------  132 (391)
T ss_dssp             SSS--------------EEEEEECTTSSEEEE------------------------------------------------
T ss_pred             CCC--------------cceEEECCCCCEEEE------------------------------------------------
Confidence            322              12234432  11111                                                


Q ss_pred             ccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 004255          308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA  387 (765)
Q Consensus       308 G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATa  387 (765)
                                                          .+..++.|++||+.+++.+..+..|. .+.+++|+|+|++|+.+
T Consensus       133 ------------------------------------~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~  175 (391)
T 1l0q_A          133 ------------------------------------TNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVA  175 (391)
T ss_dssp             ------------------------------------EETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEE
T ss_pred             ------------------------------------EeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEE
Confidence                                                12357899999999999998888774 56999999999988544


Q ss_pred             EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe---CCCcEEEEeCCCC
Q 004255          388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPF  463 (765)
Q Consensus       388 S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S---~dgTVhIwdl~~~  463 (765)
                      +.++..|++||+..       +          ..+..+..   ...+.+++|+|||++|++++   .+++|++||+...
T Consensus       176 ~~~~~~v~~~d~~~-------~----------~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          176 NFDSMSISVIDTVT-------N----------SVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             ETTTTEEEEEETTT-------T----------EEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             eCCCCEEEEEECCC-------C----------eEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            44456799999865       2          34444432   24689999999999999998   6899999999754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.81  E-value=9.2e-20  Score=195.50  Aligned_cols=199  Identities=13%  Similarity=0.110  Sum_probs=126.6

Q ss_pred             CEEEEEECCCC--eEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCc---eeEEEEecCCcccCCCCcccc
Q 004255          173 TAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGI  243 (765)
Q Consensus       173 ~tV~lWdlktg--~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~---~l~tl~t~p~p~~~~~~~~~~  243 (765)
                      ++|+|||+.++  +.+.++..+ ..|.++++++  ++|+++. ++.|++||+.+++   ....+..|..+          
T Consensus        33 ~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~----------  102 (377)
T 3dwl_C           33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA----------  102 (377)
T ss_dssp             SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSC----------
T ss_pred             CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCc----------
Confidence            68999999998  677777654 6899999987  5777765 5689999998876   23333233221          


Q ss_pred             ccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCC
Q 004255          244 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (765)
Q Consensus       244 ~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~  323 (765)
                         ...++++|       +.                           .                                
T Consensus       103 ---v~~~~~~~-------~~---------------------------~--------------------------------  113 (377)
T 3dwl_C          103 ---ATFVRWSP-------NE---------------------------D--------------------------------  113 (377)
T ss_dssp             ---EEEEECCT-------TS---------------------------S--------------------------------
T ss_pred             ---eEEEEECC-------CC---------------------------C--------------------------------
Confidence               11122211       10                           0                                


Q ss_pred             CCCCCccCCCccccccccccccCCCCeEEEEECCCCc---EEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~---~i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                                       .++.+..||.|+|||+.+++   .+..+.. |..+|.+++|+|+|++||+++.||+ |+|||+
T Consensus       114 -----------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~  175 (377)
T 3dwl_C          114 -----------------KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK-AYVLSA  175 (377)
T ss_dssp             -----------------CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC-EEEEEE
T ss_pred             -----------------EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE-EEEEEE
Confidence                             11234568899999999887   4778887 9999999999999999999999775 999998


Q ss_pred             CCCcccCCCCCCccccCC---cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC----Ccccccc
Q 004255          400 MPSCMRSGSGNHKYDWNS---SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG----DSGFQTL  472 (765)
Q Consensus       400 ~~~~~~~~sG~~~~~~~~---s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg----~~~~~~h  472 (765)
                      .......  ......|..   ....+..+  + +...|.+++|+||+++|++++.||+|+|||+.....    ...+..|
T Consensus       176 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  250 (377)
T 3dwl_C          176 YVRDVDA--KPEASVWGSRLPFNTVCAEY--P-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS  250 (377)
T ss_dssp             CCSSCC---CCCSCSSCSCCCEEEEEECC--C-CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS
T ss_pred             EecccCC--Cccccccccccchhhhhhcc--c-CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC
Confidence            5310000  000000100   11233333  3 445799999999999999999999999999987655    3344455


Q ss_pred             c
Q 004255          473 S  473 (765)
Q Consensus       473 ~  473 (765)
                      .
T Consensus       251 ~  251 (377)
T 3dwl_C          251 Q  251 (377)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.81  E-value=5.6e-18  Score=178.14  Aligned_cols=237  Identities=13%  Similarity=0.181  Sum_probs=169.5

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCe-EEEEEecCc-EEEEEc-cCCCcceEeeee--ccCCEEEEEEecCCCCCCCCCCccc
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQ-VLLLGYQNG-FQVLDV-EDASNFNELVSK--RDGPVSFLQMQPFPVKDDGCEGFRK  128 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~-vL~~G~~~G-~qVWdv-~~~g~~~ells~--~dg~V~~v~~lP~p~~~~~~d~f~~  128 (765)
                      .+.+.|..+.|..       .++ .|++|..+| +++||+ +. +.. ..+..  |.++|..+++.| .           
T Consensus        54 ~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~~wd~~~~-~~~-~~~~~~~~~~~v~~l~~~~-~-----------  112 (342)
T 1yfq_A           54 RYKHPLLCCNFID-------NTDLQIYVGTVQGEILKVDLIGS-PSF-QALTNNEANLGICRICKYG-D-----------  112 (342)
T ss_dssp             ECSSCEEEEEEEE-------SSSEEEEEEETTSCEEEECSSSS-SSE-EECBSCCCCSCEEEEEEET-T-----------
T ss_pred             ecCCceEEEEECC-------CCCcEEEEEcCCCeEEEEEeccC-Cce-EeccccCCCCceEEEEeCC-C-----------
Confidence            3566777777765       256 777777665 999999 64 434 56677  899999999986 2           


Q ss_pred             cCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC---------CeEEEEEeCCCCEEEEE
Q 004255          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS---------HCYEHVLRFRSSVCMVR  199 (765)
Q Consensus       129 srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlkt---------g~~v~tL~~~s~V~sV~  199 (765)
                        .+|++.+.                                 +++|++||+++         ++++.++.+...|.+++
T Consensus       113 --~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  157 (342)
T 1yfq_A          113 --DKLIAASW---------------------------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             --TEEEEEET---------------------------------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             --CEEEEEcC---------------------------------CCeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence              25554221                                 36899999998         88787888788999999


Q ss_pred             ecCCeEEEEe-CCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCC
Q 004255          200 CSPRIVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL  277 (765)
Q Consensus       200 ~s~~~LaV~~-~~~I~iwD~~t-~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~l  277 (765)
                      +++..|+++. ++.|++||+.+ ++........+..           .....++++|.      +.              
T Consensus       158 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----------~~i~~i~~~~~------~~--------------  206 (342)
T 1yfq_A          158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK-----------YQIRDVALLPK------EQ--------------  206 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS-----------SCEEEEEECSG------GG--------------
T ss_pred             ecCCcEEEEeCCCeEEEEECCccccccceeeecCCC-----------CceeEEEECCC------CC--------------
Confidence            9997777765 45899999988 6543322221110           00122222210      10              


Q ss_pred             CCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 004255          278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV  357 (765)
Q Consensus       278 t~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~  357 (765)
                                   .                                                 .++.+..+|.|+|||+.
T Consensus       207 -------------~-------------------------------------------------~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          207 -------------E-------------------------------------------------GYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             -------------C-------------------------------------------------EEEEEETTSEEEEEECC
T ss_pred             -------------C-------------------------------------------------EEEEEecCCcEEEEEEc
Confidence                         0                                                 01133468899999998


Q ss_pred             CC------cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          358 TR------AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       358 s~------~~i~~~~aH~~---------~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      ..      +.+..+++|..         +|.+++|+|+|++|++++.||. |+|||+..       +          ..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~-------~----------~~~  286 (342)
T 1yfq_A          225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQT-------R----------KKI  286 (342)
T ss_dssp             TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEE
T ss_pred             CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCcc-------H----------hHh
Confidence            87      77888888866         9999999999999999999775 99999965       3          456


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCc-EEEEeC
Q 004255          423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGT-CHVFVL  460 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~Las~S~dgT-VhIwdl  460 (765)
                      ..+. +++...|.+++  ||+++|++++.||+ .+.|..
T Consensus       287 ~~~~-~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          287 KNFA-KFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EECC-CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             hhhh-cccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence            6654 44356799999  99999999999999 666554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.81  E-value=9.4e-19  Score=185.81  Aligned_cols=208  Identities=14%  Similarity=0.135  Sum_probs=141.6

Q ss_pred             eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 004255           98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF  177 (765)
Q Consensus        98 ~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~l  177 (765)
                      +.++..|.++|.++++.|+             ..+||+.+.                                 +++|+|
T Consensus         6 ~~~~~~H~~~V~~v~~s~~-------------g~~lasgs~---------------------------------D~~v~l   39 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYY-------------GTRLATCSS---------------------------------DRSVKI   39 (316)
T ss_dssp             --------CCEEEEEECGG-------------GCEEEEEET---------------------------------TTEEEE
T ss_pred             eeecccccCeEEEeeEcCC-------------CCEEEEEeC---------------------------------CCeEEE
Confidence            4567789999999999874             236665321                                 369999


Q ss_pred             EECCCCe--EEEEEeCC-CCEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCcccccccc
Q 004255          178 YSFQSHC--YEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       178 Wdlktg~--~v~tL~~~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~t~~--~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      ||+++++  ++.+++.+ ..|++|++++    ++|+++. +++|++||+.+++  ...++..|..+             .
T Consensus        40 wd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------------V  106 (316)
T 3bg1_A           40 FDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS-------------V  106 (316)
T ss_dssp             EEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC-------------C
T ss_pred             EEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc-------------e
Confidence            9999875  46677754 6999999963    5777655 5689999998864  44444444431             1


Q ss_pred             ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (765)
Q Consensus       248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~  327 (765)
                      ..++++|       +.                          .+.                                   
T Consensus       107 ~~v~~~p-------~~--------------------------~g~-----------------------------------  118 (316)
T 3bg1_A          107 NSVCWAP-------HD--------------------------YGL-----------------------------------  118 (316)
T ss_dssp             CEEEECC-------TT--------------------------TCS-----------------------------------
T ss_pred             EEEEECC-------CC--------------------------CCc-----------------------------------
Confidence            2333322       10                          000                                   


Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCCc---EEEEeccCCCCeEEEEECCC-----------------CCEEEEE
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPS-----------------GTLLVTA  387 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~---~i~~~~aH~~~IsaLaFSpd-----------------G~lLATa  387 (765)
                                   .++.++.||+|+|||+..+.   ....+.+|..+|.+++|+|+                 +++||+|
T Consensus       119 -------------~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  185 (316)
T 3bg1_A          119 -------------ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG  185 (316)
T ss_dssp             -------------CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC
T ss_pred             -------------EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe
Confidence                         12245678999999998763   24567899999999999998                 5799999


Q ss_pred             EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCcEEEEeCCC
Q 004255          388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       388 S~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~Las~S~dgTVhIwdl~~  462 (765)
                      +.|++ |+|||+...      +        ....+..+ .|+ ...|.+++|+||+    ++||+++.|++|+||++..
T Consensus       186 s~D~~-v~lWd~~~~------~--------~~~~~~~l-~~h-~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          186 GCDNL-IKLWKEEED------G--------QWKEEQKL-EAH-SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             BTTSB-CCEEEECTT------S--------CEEEEECC-BCC-SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cCCCe-EEEEEeCCC------C--------ccceeeec-ccC-CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            99664 999998431      1        00233444 343 4579999999997    8999999999999999875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.81  E-value=3.1e-18  Score=185.28  Aligned_cols=116  Identities=14%  Similarity=0.219  Sum_probs=82.9

Q ss_pred             cccCCCCe-EEEEECCCCcEEEEec-c-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC---CC-----CC
Q 004255          343 ADMDNAGI-VVVKDFVTRAIISQFK-A-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG---SG-----NH  411 (765)
Q Consensus       343 ~~~~~dG~-V~IwDl~s~~~i~~~~-a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~---sG-----~~  411 (765)
                      ++++.||+ |+|||+.+++.+..|. + |..+|.+++|+|||++||+++.|+ .|+|||+........   .+     ..
T Consensus       211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-~v~iw~~~~~~~~~~~~~~~~~~~~~~  289 (355)
T 3vu4_A          211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW-TLHVFEIFNDQDNKRHALKGWINMKYF  289 (355)
T ss_dssp             EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC-EEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC-EEEEEEccCCCCcccccccceeecccc
Confidence            34567898 9999999999999998 5 999999999999999999999965 599999964210000   00     00


Q ss_pred             ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ...|+   ...+.+..+ .......++|++||++|++++.||++++|++...
T Consensus       290 ~~~~~---~~~~~~~~~-~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          290 QSEWS---LCNFKLSVD-KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCSSC---SEEEECCCC-TTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             ccccc---eeEEEeccC-CCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            00000   111222221 1122466999999999999999999999999754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.81  E-value=6.4e-17  Score=176.67  Aligned_cols=226  Identities=8%  Similarity=0.034  Sum_probs=165.3

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .+++|+++..++ +++||++ .+++...+..+...+..+++.|+             ...|+++...             
T Consensus       180 ~~~~~~s~~~d~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~-------------  232 (433)
T 3bws_A          180 HNELWVSQMQANAVHVFDLK-TLAYKATVDLTGKWSKILLYDPI-------------RDLVYCSNWI-------------  232 (433)
T ss_dssp             GTEEEEEEGGGTEEEEEETT-TCCEEEEEECSSSSEEEEEEETT-------------TTEEEEEETT-------------
T ss_pred             CCEEEEEECCCCEEEEEECC-CceEEEEEcCCCCCeeEEEEcCC-------------CCEEEEEecC-------------
Confidence            367888888765 9999995 56677777778889999999874             2255443211             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe---------CCeEEEEECCCC
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL---------ATQIYCFDALTL  221 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~---------~~~I~iwD~~t~  221 (765)
                                         +++|++||+++++.+..+.....+..+++++  +.|+++.         ++.|++||+.++
T Consensus       233 -------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          233 -------------------SEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             -------------------TTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             -------------------CCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence                               3689999999999999998888899999987  5677655         457999999998


Q ss_pred             ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhh
Q 004255          222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH  301 (765)
Q Consensus       222 ~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~  301 (765)
                      +.+..+.. +.                    .++.+++..+.                           ..+        
T Consensus       294 ~~~~~~~~-~~--------------------~~~~~~~~~~g---------------------------~~l--------  317 (433)
T 3bws_A          294 KLIDTIGP-PG--------------------NKRHIVSGNTE---------------------------NKI--------  317 (433)
T ss_dssp             EEEEEEEE-EE--------------------CEEEEEECSST---------------------------TEE--------
T ss_pred             cEEeeccC-CC--------------------CcceEEECCCC---------------------------CEE--------
Confidence            76655421 11                    01122222211                           000        


Q ss_pred             hhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 004255          302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG  381 (765)
Q Consensus       302 ~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG  381 (765)
                                                              .+.+..+|.|++||+.+++.+..+. |...+.+++|+|+|
T Consensus       318 ----------------------------------------~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg  356 (433)
T 3bws_A          318 ----------------------------------------YVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG  356 (433)
T ss_dssp             ----------------------------------------EEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS
T ss_pred             ----------------------------------------EEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC
Confidence                                                    0122457899999999999888876 67789999999999


Q ss_pred             CEEEEEEcCC--------------CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 004255          382 TLLVTASVYG--------------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA  447 (765)
Q Consensus       382 ~lLATaS~dG--------------t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La  447 (765)
                      ++|++++.+.              ..|++||+..       +          ..+..+..   ...+.+++|+|||++|+
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-------~----------~~~~~~~~---~~~~~~~~~s~dg~~l~  416 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-------D----------TVKEFWEA---GNQPTGLDVSPDNRYLV  416 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-------T----------EEEEEEEC---SSSEEEEEECTTSCEEE
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCC-------C----------cEEEEecC---CCCCceEEEcCCCCEEE
Confidence            9999888742              2699999854       3          34555542   24589999999999999


Q ss_pred             EEeC-CCcEEEEeCCC
Q 004255          448 IVSS-KGTCHVFVLSP  462 (765)
Q Consensus       448 s~S~-dgTVhIwdl~~  462 (765)
                      +++. |++|+||+++.
T Consensus       417 ~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          417 ISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEETTTTEEEEEEETT
T ss_pred             EEECCCCeEEEEEecC
Confidence            8875 99999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=5.4e-18  Score=179.79  Aligned_cols=212  Identities=14%  Similarity=0.167  Sum_probs=149.9

Q ss_pred             cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 004255           96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV  175 (765)
Q Consensus        96 ~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV  175 (765)
                      ++..++..|.++|.++++.|+             ..+||+.+.                                 +++|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~-------------~~~l~~~~~---------------------------------dg~i   35 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYY-------------GKRLATCSS---------------------------------DKTI   35 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSS-------------SSEEEEEET---------------------------------TSCE
T ss_pred             CccEEecCCcccEEEEEEcCC-------------CCEEEEEEC---------------------------------CCcE
Confidence            456788999999999999974             236665321                                 3589


Q ss_pred             EEEECC--CCeEEEEEeCC-CCEEEEEec----CCeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCcccccc
Q 004255          176 RFYSFQ--SHCYEHVLRFR-SSVCMVRCS----PRIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINV  245 (765)
Q Consensus       176 ~lWdlk--tg~~v~tL~~~-s~V~sV~~s----~~~LaV~~-~~~I~iwD~~t~~--~l~tl~t~p~p~~~~~~~~~~~~  245 (765)
                      +|||+.  +++.+..+..+ ..|.+++++    .++|+++. ++.|++||+.+++  .+..+..|..+            
T Consensus        36 ~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------  103 (379)
T 3jrp_A           36 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS------------  103 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC------------
T ss_pred             EEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc------------
Confidence            999998  66777788754 689999997    46777765 5679999999886  33443333321            


Q ss_pred             ccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCC
Q 004255          246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (765)
Q Consensus       246 ~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s  325 (765)
                       ...++++|       +..                          +.                                 
T Consensus       104 -v~~~~~~~-------~~~--------------------------~~---------------------------------  116 (379)
T 3jrp_A          104 -VNSVQWAP-------HEY--------------------------GP---------------------------------  116 (379)
T ss_dssp             -EEEEEECC-------GGG--------------------------CS---------------------------------
T ss_pred             -eEEEEeCC-------CCC--------------------------CC---------------------------------
Confidence             12233322       100                          00                                 


Q ss_pred             CCCccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECC-------------CCCEEEEEEcC
Q 004255          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDP-------------SGTLLVTASVY  390 (765)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~aH~~~IsaLaFSp-------------dG~lLATaS~d  390 (765)
                                     .++.+..||.|+|||+.++.  ....+.+|..+|.+++|+|             ++.+|++++.|
T Consensus       117 ---------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  181 (379)
T 3jrp_A          117 ---------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD  181 (379)
T ss_dssp             ---------------EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred             ---------------EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence                           01234568999999998873  4556789999999999999             79999999997


Q ss_pred             CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCcEEEEeCCCC
Q 004255          391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD---g~~Las~S~dgTVhIwdl~~~  463 (765)
                      |. |+|||+...       .      .....+..+. + +...|.+++|+||   +++|++++.||+|+|||+...
T Consensus       182 g~-i~i~d~~~~-------~------~~~~~~~~~~-~-h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          182 NL-VKIWKYNSD-------A------QTYVLESTLE-G-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             SC-EEEEEEETT-------T------TEEEEEEEEC-C-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             Ce-EEEEEecCC-------C------cceeeEEEEe-c-ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            75 999998641       0      0012333443 3 3457999999999   899999999999999999763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.81  E-value=5.3e-18  Score=184.52  Aligned_cols=187  Identities=16%  Similarity=0.142  Sum_probs=128.7

Q ss_pred             CCEEEEEECCCCe-E---EEEEeCC------CCEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccC
Q 004255          172 PTAVRFYSFQSHC-Y---EHVLRFR------SSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLA  236 (765)
Q Consensus       172 p~tV~lWdlktg~-~---v~tL~~~------s~V~sV~~s~--~~LaV~~---~~~I~iwD~~t~~~l~tl~t~p~p~~~  236 (765)
                      +++||+|++.+++ .   +....+.      ..+..|+|+|  ++||++.   ++.|+|||+.++++++++.. ..+   
T Consensus       103 d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~-~~~---  178 (365)
T 4h5i_A          103 NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET-RGE---  178 (365)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC-SSC---
T ss_pred             CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC-CCc---
Confidence            4689999987643 2   2233321      2588999998  6777654   45799999999998888753 221   


Q ss_pred             CCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeec
Q 004255          237 GQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLS  314 (765)
Q Consensus       237 ~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls  314 (765)
                                ...++|+|  ++||+++                                                     
T Consensus       179 ----------V~~v~fspdg~~l~s~s-----------------------------------------------------  195 (365)
T 4h5i_A          179 ----------VKDLHFSTDGKVVAYIT-----------------------------------------------------  195 (365)
T ss_dssp             ----------CCEEEECTTSSEEEEEC-----------------------------------------------------
T ss_pred             ----------eEEEEEccCCceEEecc-----------------------------------------------------
Confidence                      23466655  3444332                                                     


Q ss_pred             ccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE--EeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 004255          315 KYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSGTLLVTASVYGN  392 (765)
Q Consensus       315 ~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~--~~~aH~~~IsaLaFSpdG~lLATaS~dGt  392 (765)
                                                       ++.+++|+..+++.+.  .+.+|...|.+++|+|+|++|++++.+++
T Consensus       196 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~  242 (365)
T 4h5i_A          196 ---------------------------------GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG  242 (365)
T ss_dssp             ---------------------------------SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred             ---------------------------------ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence                                             2345667766666543  34679999999999999999999998764


Q ss_pred             ---EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcc-
Q 004255          393 ---NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-  468 (765)
Q Consensus       393 ---~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~-  468 (765)
                         .+++||+....             ........+. + +...|++++|||||++||+|+.|++|+|||+........ 
T Consensus       243 ~~~~i~~~~~~~~~-------------~~~~~~~~~~-~-~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~  307 (365)
T 4h5i_A          243 KGIVLTKISIKSGN-------------TSVLRSKQVT-N-RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF  307 (365)
T ss_dssp             CCEEEEEEEEETTE-------------EEEEEEEEEE-S-SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceeEEeecccccce-------------ecceeeeeec-C-CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence               68889875410             0001223333 3 334699999999999999999999999999987554444 


Q ss_pred             ccccc
Q 004255          469 FQTLS  473 (765)
Q Consensus       469 ~~~h~  473 (765)
                      ++.|.
T Consensus       308 ~~gH~  312 (365)
T 4h5i_A          308 KQAHS  312 (365)
T ss_dssp             TTSSS
T ss_pred             cCccc
Confidence            35675

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.81  E-value=9.5e-17  Score=172.86  Aligned_cols=245  Identities=14%  Similarity=0.110  Sum_probs=171.6

Q ss_pred             cEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEE
Q 004255           58 QVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVV  136 (765)
Q Consensus        58 ~v~w~~fd~l~~~~~~~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv  136 (765)
                      .+..+.|..    +  .+.+++++..+ .+++||+. .+++...+..+. .|..+++.|+             ...|++.
T Consensus        33 ~~~~~~~s~----d--g~~l~~~~~~d~~i~v~d~~-~~~~~~~~~~~~-~v~~~~~spd-------------g~~l~~~   91 (391)
T 1l0q_A           33 NPMGAVISP----D--GTKVYVANAHSNDVSIIDTA-TNNVIATVPAGS-SPQGVAVSPD-------------GKQVYVT   91 (391)
T ss_dssp             SEEEEEECT----T--SSEEEEEEGGGTEEEEEETT-TTEEEEEEECSS-SEEEEEECTT-------------SSEEEEE
T ss_pred             CcceEEECC----C--CCEEEEECCCCCeEEEEECC-CCeEEEEEECCC-CccceEECCC-------------CCEEEEE
Confidence            466666654    1  13455777554 59999995 566766666555 8999999874             2355543


Q ss_pred             EcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeE-EEEe-CCe
Q 004255          137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVGL-ATQ  212 (765)
Q Consensus       137 ~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~L-aV~~-~~~  212 (765)
                      ..+                                +++|++||+.+++.+..+..+..+.++++++  +.| +++. ++.
T Consensus        92 ~~~--------------------------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           92 NMA--------------------------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKT  139 (391)
T ss_dssp             ETT--------------------------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             ECC--------------------------------CCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCE
Confidence            321                                2689999999999999999988999999987  455 4444 568


Q ss_pred             EEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCc
Q 004255          213 IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS  292 (765)
Q Consensus       213 I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gs  292 (765)
                      |++||+.+++.+..+..+..+              ..++++|       +.                           ..
T Consensus       140 v~~~d~~~~~~~~~~~~~~~~--------------~~~~~~~-------dg---------------------------~~  171 (391)
T 1l0q_A          140 VSVINTVTKAVINTVSVGRSP--------------KGIAVTP-------DG---------------------------TK  171 (391)
T ss_dssp             EEEEETTTTEEEEEEECCSSE--------------EEEEECT-------TS---------------------------SE
T ss_pred             EEEEECCCCcEEEEEecCCCc--------------ceEEECC-------CC---------------------------CE
Confidence            999999999887776543221              1233322       10                           00


Q ss_pred             ceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCe
Q 004255          293 LVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI  372 (765)
Q Consensus       293 lva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~I  372 (765)
                      ++                                                ..+..+|.|++||+.+++.+..+.. ...+
T Consensus       172 l~------------------------------------------------~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~  202 (391)
T 1l0q_A          172 VY------------------------------------------------VANFDSMSISVIDTVTNSVIDTVKV-EAAP  202 (391)
T ss_dssp             EE------------------------------------------------EEETTTTEEEEEETTTTEEEEEEEC-SSEE
T ss_pred             EE------------------------------------------------EEeCCCCEEEEEECCCCeEEEEEec-CCCc
Confidence            00                                                0123568999999999988877764 4678


Q ss_pred             EEEEECCCCCEEEEEEc--CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE-EEE
Q 004255          373 SALCFDPSGTLLVTASV--YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI-AIV  449 (765)
Q Consensus       373 saLaFSpdG~lLATaS~--dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L-as~  449 (765)
                      .+++|+|+|++|++++.  .+..|++||+..       +          ..+..+..+   ..+.+++|+|||++| +++
T Consensus       203 ~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~s~  262 (391)
T 1l0q_A          203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-------N----------KITARIPVG---PDPAGIAVTPDGKKVYVAL  262 (391)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEETTT-------T----------EEEEEEECC---SSEEEEEECTTSSEEEEEE
T ss_pred             cceEECCCCCEEEEEecCcCCCcEEEEECCC-------C----------eEEEEEecC---CCccEEEEccCCCEEEEEc
Confidence            99999999999999884  355799999864       2          355555432   247899999999988 566


Q ss_pred             eCCCcEEEEeCCCCCCCcccccc
Q 004255          450 SSKGTCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       450 S~dgTVhIwdl~~~gg~~~~~~h  472 (765)
                      +.|++|++||+........+..|
T Consensus       263 ~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          263 SFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECS
T ss_pred             CCCCEEEEEECCCCcEEEEEECC
Confidence            88999999999874433334444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.80  E-value=2.3e-18  Score=181.73  Aligned_cols=225  Identities=12%  Similarity=0.158  Sum_probs=154.0

Q ss_pred             EeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEE
Q 004255           99 ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFY  178 (765)
Q Consensus        99 ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lW  178 (765)
                      .+...|.++|.++++.|.+.         ...+++++.++                                 .++|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~---------~~~~~~~~~~~---------------------------------~~~v~vw   49 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSK---------EGDPLVFATVG---------------------------------SNRVTLY   49 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCC---------TTSCEEEEEEE---------------------------------TTEEEEE
T ss_pred             EeecCCCCceEEEEEecccC---------CCCceEEEECC---------------------------------CCEEEEE
Confidence            45668899999999998521         12234444332                                 2489999


Q ss_pred             ECCCCeEEEEEe------CCCCEEEEEecCC------eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255          179 SFQSHCYEHVLR------FRSSVCMVRCSPR------IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (765)
Q Consensus       179 dlktg~~v~tL~------~~s~V~sV~~s~~------~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~  245 (765)
                      |+.+++.+..+.      ....|.++++++.      +|+++. ++.|++||+.+++.+..+..|..+            
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------------  117 (366)
T 3k26_A           50 ECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA------------  117 (366)
T ss_dssp             EECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC------------
T ss_pred             EcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc------------
Confidence            999998887775      2367999999875      677655 567999999999988888766542            


Q ss_pred             ccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCC
Q 004255          246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (765)
Q Consensus       246 ~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s  325 (765)
                       ...++++|       .+                           +.+                                
T Consensus       118 -i~~~~~~~-------~~---------------------------~~~--------------------------------  130 (366)
T 3k26_A          118 -INELKFHP-------RD---------------------------PNL--------------------------------  130 (366)
T ss_dssp             -EEEEEECS-------SC---------------------------TTE--------------------------------
T ss_pred             -EEEEEECC-------CC---------------------------CCE--------------------------------
Confidence             22333322       00                           000                                


Q ss_pred             CCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 004255          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS  402 (765)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~---~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~  402 (765)
                                      ++.+..||.|+|||+.+++.+..+   .+|..+|.+++|+|+|.+|++++.||. |++||+...
T Consensus       131 ----------------l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~  193 (366)
T 3k26_A          131 ----------------LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS-LKLWRINSK  193 (366)
T ss_dssp             ----------------EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSC-EEEEESCSH
T ss_pred             ----------------EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCC-EEEEECCCC
Confidence                            113456899999999999999888   789999999999999999999999775 999998642


Q ss_pred             ccc---------CCCCCCccccCCc--ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          403 CMR---------SGSGNHKYDWNSS--HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       403 ~~~---------~~sG~~~~~~~~s--~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      ...         +..+.. ......  ....+....+ +...|.+++|+  +++|++++.|++|++||+.....
T Consensus       194 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          194 RMMNAIKESYDYNPNKTN-RPFISQKIHFPDFSTRDI-HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMED  263 (366)
T ss_dssp             HHHHHHHHHHTCCGGGCS-SCCCCEEECCCSEEECSS-CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred             ccccccceeEEecCCCCc-ccccceeeccCccccccC-CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccc
Confidence            100         000000 000000  0001111222 34579999999  78999999999999999976544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.6e-17  Score=202.35  Aligned_cols=247  Identities=11%  Similarity=0.087  Sum_probs=166.9

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL  132 (765)
                      ++++.|..+.|+.       ++++|++|..+| ++|||.. ..++...+ .|.++|..|+|.|.              .+
T Consensus        15 gh~~~V~~lafsp-------dg~~lAsgs~Dg~I~lw~~~-~~~~~~~~-~~~~~V~~l~fspg--------------~~   71 (902)
T 2oaj_A           15 GMSSKPIAAAFDF-------TQNLLAIATVTGEVHIYGQQ-QVEVVIKL-EDRSAIKEMRFVKG--------------IY   71 (902)
T ss_dssp             ECSSCEEEEEEET-------TTTEEEEEETTSEEEEECST-TCEEEEEC-SSCCCEEEEEEETT--------------TE
T ss_pred             CCCCCcEEEEECC-------CCCEEEEEeCCCEEEEEeCC-CcEEEEEc-CCCCCEEEEEEcCC--------------CE
Confidence            4678899999986       257899999887 9999985 33333322 36789999999861              25


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-
Q 004255          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-  209 (765)
Q Consensus       133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-  209 (765)
                      |+.++.                                 +++|+|||++++++++++.+++.|.++++++  ++|++|. 
T Consensus        72 L~S~s~---------------------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~  118 (902)
T 2oaj_A           72 LVVINA---------------------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ  118 (902)
T ss_dssp             EEEEET---------------------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEET
T ss_pred             EEEEEC---------------------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcC
Confidence            655332                                 3699999999999999999889999999998  6788776 


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcc--cCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcC
Q 004255          210 ATQIYCFDALTLENKFSVLTYPVPQ--LAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS  287 (765)
Q Consensus       210 ~~~I~iwD~~t~~~l~tl~t~p~p~--~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~s  287 (765)
                      ++.|++||+.++++. .+.......  ....+-   ......++++|       .+                        
T Consensus       119 dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h---~~~V~sl~~sp-------~~------------------------  163 (902)
T 2oaj_A          119 NGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAAR---LSPIVSIQWNP-------RD------------------------  163 (902)
T ss_dssp             TSCEEEEETTTTEEE-EEEECCHHHHHTCSSSC---CCCCCEEEEET-------TE------------------------
T ss_pred             CCcEEEEECCCCccc-cceeccccccccccccC---CCCeEEEEEcc-------CC------------------------
Confidence            457999999988652 111100000  000000   00011222222       00                        


Q ss_pred             CCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 004255          288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA  367 (765)
Q Consensus       288 p~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a  367 (765)
                         +                                                ..++.+..||.| |||+.+++.+..|..
T Consensus       164 ---~------------------------------------------------~~l~~g~~dg~v-lWd~~~~~~~~~~~~  191 (902)
T 2oaj_A          164 ---I------------------------------------------------GTVLISYEYVTL-TYSLVENEIKQSFIY  191 (902)
T ss_dssp             ---E------------------------------------------------EEEEEECSSCEE-EEETTTTEEEEEECC
T ss_pred             ---C------------------------------------------------CEEEEEeCCCcE-EEECCCCceEEEEec
Confidence               0                                                001234568899 999999998888876


Q ss_pred             C------------------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE--Ee-
Q 004255          368 H------------------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK--LH-  426 (765)
Q Consensus       368 H------------------~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~--l~-  426 (765)
                      |                  ..+|.+++|+|||++|||++.||+ |+|||+..       |          +.+..  +. 
T Consensus       192 ~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~-------g----------~~~~~r~l~~  253 (902)
T 2oaj_A          192 ELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANS-------G----------HMIMARTVFE  253 (902)
T ss_dssp             CBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTT-------C----------CEEEEECSSC
T ss_pred             ccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCC-------C----------cEEEEEeecc
Confidence            6                  578999999999999999999775 99999965       3          23321  11 


Q ss_pred             -ccc------------ccccEEEEEEc----cCC-CEEEEEeCC-----CcEEEEeCC
Q 004255          427 -RGI------------TSATIQDICFS----HYS-QWIAIVSSK-----GTCHVFVLS  461 (765)
Q Consensus       427 -rG~------------~~a~I~slaFS----pDg-~~Las~S~d-----gTVhIwdl~  461 (765)
                       .++            +...|++++|+    ||+ .+|++++.|     +++++|++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~  311 (902)
T 2oaj_A          254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG  311 (902)
T ss_dssp             SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred             cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence             011            23369999995    554 567888766     379999863

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.4e-16  Score=164.68  Aligned_cols=210  Identities=11%  Similarity=0.069  Sum_probs=152.7

Q ss_pred             CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 004255           95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA  174 (765)
Q Consensus        95 g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t  174 (765)
                      .++...+..|.++|.++++ |+             ..+|++.+.                                 +++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~-------------~~~l~s~~~---------------------------------dg~   40 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VD-------------DSKVASVSR---------------------------------DGT   40 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EE-------------TTEEEEEET---------------------------------TSE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cC-------------CCEEEEEEc---------------------------------CCc
Confidence            3566778899999999998 64             236655321                                 368


Q ss_pred             EEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEEe-CCeEEEEECCCCc---eeEEEEecCCcccCCCCcccccccc
Q 004255          175 VRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       175 V~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~---~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      |++||+.+++.+..+.. ...|.++++++  ++|+++. ++.|++||+.+..   ....+..|..+             .
T Consensus        41 v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~-------------i  107 (313)
T 3odt_A           41 VRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN-------------V  107 (313)
T ss_dssp             EEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC-------------E
T ss_pred             EEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC-------------E
Confidence            99999999998888875 57999999987  6777665 5679999987653   33333333221             1


Q ss_pred             ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (765)
Q Consensus       248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~  327 (765)
                      ..+++..++                                                                       
T Consensus       108 ~~~~~~~~~-----------------------------------------------------------------------  116 (313)
T 3odt_A          108 CSLSFQDGV-----------------------------------------------------------------------  116 (313)
T ss_dssp             EEEEEETTE-----------------------------------------------------------------------
T ss_pred             EEEEecCCE-----------------------------------------------------------------------
Confidence            112221111                                                                       


Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccC
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRS  406 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~  406 (765)
                                    ++.+..||.|++||  .++.+..+..|..+|.+++|+| ++.+|++++.+|. |++||..      
T Consensus       117 --------------l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~i~d~~------  173 (313)
T 3odt_A          117 --------------VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT-IKLWQND------  173 (313)
T ss_dssp             --------------EEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC-EEEEETT------
T ss_pred             --------------EEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC-EEEEecC------
Confidence                          12345688999999  7788889999999999999998 9999999999775 9999952      


Q ss_pred             CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       407 ~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                                   ..+..+. +.+...|.+++|+|+++ |++++.||+|+|||+........+..|.
T Consensus       174 -------------~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~  225 (313)
T 3odt_A          174 -------------KVIKTFS-GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE  225 (313)
T ss_dssp             -------------EEEEEEC-SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             -------------ceEEEEe-ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC
Confidence                         2444443 43456799999999998 9999999999999998755444555554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.79  E-value=3.5e-18  Score=187.43  Aligned_cols=257  Identities=13%  Similarity=0.039  Sum_probs=138.6

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcce-----EeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFN-----ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ  148 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~-----ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~  148 (765)
                      .++|++|..++ ++|||++. +++.     ..+.+|.+.|..|++.|.....     ......+||.++.          
T Consensus       101 ~~~las~~~d~~v~lw~~~~-~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~-----~~~d~~~las~s~----------  164 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKN-ETIITQHVLGGKSGHHNFVNDIDIADVYSAD-----NRLAEQVIASVGD----------  164 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEET-TEEEEEEEECTTTSCSSCEEEEEEEEEECTT-----CSEEEEEEEEEET----------
T ss_pred             CCEEEEEeCCCcEEEEECCC-CccceeeeecccCCCCCceEEEEEccccccc-----cCCCCCEEEEEEC----------
Confidence            56788888775 99999964 3332     3467899999999999832110     0012236765321          


Q ss_pred             CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEE-EEeCCCCEEEEEecC---CeEEEEe-CCeEEEEECCCCce
Q 004255          149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEH-VLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLEN  223 (765)
Q Consensus       149 ~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~-tL~~~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~  223 (765)
                                             +++|+|||++++..+. .+.+++.|.+|+|+|   ++|+++. ++.|++||+.+++.
T Consensus       165 -----------------------D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~  221 (393)
T 4gq1_A          165 -----------------------DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS  221 (393)
T ss_dssp             -----------------------TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred             -----------------------CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence                                   4799999998876655 456788999999997   3677765 56799999999887


Q ss_pred             eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhh
Q 004255          224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK  303 (765)
Q Consensus       224 l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k  303 (765)
                      ...+..++....           ...+.+...-+.....     ..+                                 
T Consensus       222 ~~~~~~~~~~~~-----------~~~~s~~~~~~~~~~~-----~~~---------------------------------  252 (393)
T 4gq1_A          222 AEENSQTELVKN-----------PWLLTLNTLPLVNTCH-----SSG---------------------------------  252 (393)
T ss_dssp             ---------CSC-----------CCSEEEESGGGC-----------C---------------------------------
T ss_pred             cccccccCCccc-----------ceEEecccccceeeee-----ccc---------------------------------
Confidence            665543332100           0011111100000000     000                                 


Q ss_pred             hhhcccceeecccccccCCCCCCCCccC-CCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC---
Q 004255          304 QFAAGLSKTLSKYCQELLPDGSSSPVSP-NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---  379 (765)
Q Consensus       304 ~la~G~~ktls~~~~~~~p~~s~~~~s~-s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp---  379 (765)
                           ....             .....+ .+++    ..++.+..|++++|||+.+++....+..|...+..+.|.|   
T Consensus       253 -----~~~~-------------v~~v~~~~~dg----~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~  310 (393)
T 4gq1_A          253 -----IASS-------------LANVRWIGSDG----SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ  310 (393)
T ss_dssp             -----CSSS-------------CSEEEEETTTT----CEEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred             -----cccc-------------ceeeeeecCCC----CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence                 0000             000000 0111    1234567899999999998887777777776666555544   


Q ss_pred             -----------------CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255          380 -----------------SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (765)
Q Consensus       380 -----------------dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (765)
                                       ++.++++++.|| .|+|||+.+       +          ..+..+..+  ...|.+|+||||
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-~V~lwd~~~-------~----------~~~~~~~~~--~~~V~svafspd  370 (393)
T 4gq1_A          311 GISLFPSLLGACPHPRYMDYFATAHSQHG-LIQLINTYE-------K----------DSNSIPIQL--GMPIVDFCWHQD  370 (393)
T ss_dssp             EECSSCCSSCCEECSSCTTEEEEEETTTT-EEEEEETTC-------T----------TCCEEEEEC--SSCEEEEEECTT
T ss_pred             cccccCcceeEEEccCCCCEEEEEECCCC-EEEEEECCC-------C----------cEEEEecCC--CCcEEEEEEcCC
Confidence                             334566777755 699999865       2          223333322  347999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCC
Q 004255          443 SQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       443 g~~Las~S~dgTVhIwdl~~  462 (765)
                      |++||+++.+| +.||.+..
T Consensus       371 G~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          371 GSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             SSEEEEEESSE-EEEEEEGG
T ss_pred             CCEEEEEeCCC-eEEEEEeC
Confidence            99999999777 66776653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.79  E-value=5.3e-17  Score=170.19  Aligned_cols=213  Identities=12%  Similarity=0.098  Sum_probs=150.2

Q ss_pred             cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 004255           96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV  175 (765)
Q Consensus        96 ~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV  175 (765)
                      .++.+|.+|.++|.+|++.|+            ...+||..+.                                 +++|
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~------------~~~~l~S~s~---------------------------------D~~i   63 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQ------------FPDMILSASR---------------------------------DKTI   63 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTT------------CTTEEEEEET---------------------------------TSCE
T ss_pred             EEEEEECCccCCEEEEEEeCC------------CCCEEEEEcC---------------------------------CCeE
Confidence            456678999999999999974            1236655221                                 3689


Q ss_pred             EEEECCCCe-----EEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255          176 RFYSFQSHC-----YEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (765)
Q Consensus       176 ~lWdlktg~-----~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~  246 (765)
                      +|||+.+++     +.++++.+ ..|.++++++  ++|+++. ++.|++|+............+...             
T Consensus        64 ~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~-------------  130 (340)
T 4aow_A           64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD-------------  130 (340)
T ss_dssp             EEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------
T ss_pred             EEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc-------------
Confidence            999987654     56677654 6899999987  5777655 567999999887655544432220             


Q ss_pred             cceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255          247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (765)
Q Consensus       247 ~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~  326 (765)
                      ...+.       +....                           .                                   
T Consensus       131 ~~~~~-------~~~~~---------------------------~-----------------------------------  141 (340)
T 4aow_A          131 VLSVA-------FSSDN---------------------------R-----------------------------------  141 (340)
T ss_dssp             EEEEE-------ECTTS---------------------------S-----------------------------------
T ss_pred             eeEEE-------EeecC---------------------------c-----------------------------------
Confidence            00111       11100                           0                                   


Q ss_pred             CCccCCCccccccccccccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEECCCC--CEEEEEEcCCCEEEEEeCCCCc
Q 004255          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRIMPSC  403 (765)
Q Consensus       327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~-i~~~~aH~~~IsaLaFSpdG--~lLATaS~dGt~IrVWdi~~~~  403 (765)
                                    .++++..||.+++||+..... ...+.+|...|.+++|++++  .++++++.|+. |++||+..  
T Consensus       142 --------------~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~--  204 (340)
T 4aow_A          142 --------------QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLAN--  204 (340)
T ss_dssp             --------------CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTT--
T ss_pred             --------------cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCC--
Confidence                          012345789999999987654 44567899999999999875  57899999665 99999965  


Q ss_pred             ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255          404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       404 ~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~  469 (765)
                           +          ..+..+. ++ ...|++|+|+||+++|++++.||+|+|||+........+
T Consensus       205 -----~----------~~~~~~~-~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  253 (340)
T 4aow_A          205 -----C----------KLKTNHI-GH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL  253 (340)
T ss_dssp             -----T----------EEEEEEC-CC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             -----C----------ceeeEec-CC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence                 2          3555553 43 457999999999999999999999999999875443333

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.79  E-value=8.7e-17  Score=190.04  Aligned_cols=243  Identities=15%  Similarity=0.188  Sum_probs=179.6

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP  131 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srp  131 (765)
                      ..+...|..+.|..       .++.|++|..+| ++|||+. .++....+..|.+.|.++++.|+             .+
T Consensus        52 ~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~~v~~~~~s~~-------------~~  110 (814)
T 3mkq_A           52 QVTETPVRAGKFIA-------RKNWIIVGSDDFRIRVFNYN-TGEKVVDFEAHPDYIRSIAVHPT-------------KP  110 (814)
T ss_dssp             ECCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECSS-------------SS
T ss_pred             ecCCCcEEEEEEeC-------CCCEEEEEeCCCeEEEEECC-CCcEEEEEecCCCCEEEEEEeCC-------------CC
Confidence            34667788888866       256788888776 9999995 57777888889999999999874             34


Q ss_pred             EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeC-CCCEEEEEecC---CeEE
Q 004255          132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRF-RSSVCMVRCSP---RIVA  206 (765)
Q Consensus       132 LLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg-~~v~tL~~-~s~V~sV~~s~---~~La  206 (765)
                      +|++.+.                                 +++|++||+.++ ..+..+.. ...|.++++++   +.|+
T Consensus       111 ~l~~~~~---------------------------------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A          111 YVLSGSD---------------------------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (814)
T ss_dssp             EEEEEET---------------------------------TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             EEEEEcC---------------------------------CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence            6665221                                 368999999987 67777765 46899999987   4666


Q ss_pred             EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255          207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (765)
Q Consensus       207 V~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s  285 (765)
                      ++. ++.|++||+.+++....+..+...            ...       .+++....                      
T Consensus       158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~------------~v~-------~~~~~~~~----------------------  196 (814)
T 3mkq_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQER------------GVN-------YVDYYPLP----------------------  196 (814)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTT------------CCC-------EEEECCST----------------------
T ss_pred             EEeCCCeEEEEECCCCcceeEEecCCCC------------CEE-------EEEEEECC----------------------
Confidence            655 568999999988877777653321            011       22222200                      


Q ss_pred             cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (765)
Q Consensus       286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~  365 (765)
                         + +.                                                .++.+..+|.|++||+.+++.+..+
T Consensus       197 ---~-~~------------------------------------------------~l~~~~~dg~i~~~d~~~~~~~~~~  224 (814)
T 3mkq_A          197 ---D-KP------------------------------------------------YMITASDDLTIKIWDYQTKSCVATL  224 (814)
T ss_dssp             ---T-CC------------------------------------------------EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             ---C-CC------------------------------------------------EEEEEeCCCEEEEEECCCCcEEEEE
Confidence               0 00                                                0123456899999999999999999


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-
Q 004255          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-  444 (765)
Q Consensus       366 ~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-  444 (765)
                      .+|..+|.+++|+|+|.+|++++.||. |++||+..       +          ..+..+..+  ...|++++|+|||+ 
T Consensus       225 ~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~-------~----------~~~~~~~~~--~~~v~~~~~~~~~~~  284 (814)
T 3mkq_A          225 EGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSST-------Y----------KVEKTLNVG--LERSWCIATHPTGRK  284 (814)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTT-------C----------SEEEEECCS--SSSEEEEEECTTCGG
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEeecC--CCcEEEEEEccCCCc
Confidence            999999999999999999999999775 99999864       3          355666432  34699999999997 


Q ss_pred             -EEEEEeCCCcEEEEeCCCC
Q 004255          445 -WIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       445 -~Las~S~dgTVhIwdl~~~  463 (765)
                       ++++++ ++.+.+|++...
T Consensus       285 ~~~~~~~-~~~~~~~~~~~~  303 (814)
T 3mkq_A          285 NYIASGF-DNGFTVLSLGND  303 (814)
T ss_dssp             GEEEEEE-TTEEEEEECSCC
T ss_pred             eEEEEEe-CCCEEEEEcCCC
Confidence             465555 666889988654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.79  E-value=8.4e-17  Score=166.96  Aligned_cols=210  Identities=16%  Similarity=0.156  Sum_probs=144.7

Q ss_pred             ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (765)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~  176 (765)
                      +..++..|.++|.+|++.|+             ..+||+.+.                                 +++|+
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~-------------~~~l~~~~~---------------------------------dg~i~   36 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFY-------------GRHVATCSS---------------------------------DQHIK   36 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSS-------------SSEEEEEET---------------------------------TSEEE
T ss_pred             ccccCcccccceeEEEEcCC-------------CCEEEEeeC---------------------------------CCeEE
Confidence            45678899999999999974             236665321                                 36899


Q ss_pred             EEECCCC----eEEEEEeC-CCCEEEEEecC----CeEEEEe-CCeEEEEECCCCce---------eEEEEecCCcccCC
Q 004255          177 FYSFQSH----CYEHVLRF-RSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLEN---------KFSVLTYPVPQLAG  237 (765)
Q Consensus       177 lWdlktg----~~v~tL~~-~s~V~sV~~s~----~~LaV~~-~~~I~iwD~~t~~~---------l~tl~t~p~p~~~~  237 (765)
                      +||+.++    +.+..+.. ...|.++++++    ++|+++. ++.|++||+.+++.         +..+..|..+    
T Consensus        37 iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----  112 (351)
T 3f3f_A           37 VFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGS----  112 (351)
T ss_dssp             EEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSC----
T ss_pred             EEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCc----
Confidence            9999977    46777764 46899999975    5777765 56799999988742         2222222221    


Q ss_pred             CCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccc
Q 004255          238 QGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC  317 (765)
Q Consensus       238 ~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~  317 (765)
                               ...++++|       +..                                                     
T Consensus       113 ---------v~~~~~~~-------~~~-----------------------------------------------------  123 (351)
T 3f3f_A          113 ---------LYSVKFAP-------AHL-----------------------------------------------------  123 (351)
T ss_dssp             ---------EEEEEECC-------GGG-----------------------------------------------------
T ss_pred             ---------eeEEEEcC-------CCC-----------------------------------------------------
Confidence                     11122211       000                                                     


Q ss_pred             cccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec-------------cCCCCeEEEEECCC---C
Q 004255          318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-------------AHTSPISALCFDPS---G  381 (765)
Q Consensus       318 ~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-------------aH~~~IsaLaFSpd---G  381 (765)
                                       .    ..++.+..||.|+|||+.+++.+..+.             +|...|.+++|+|+   +
T Consensus       124 -----------------~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  182 (351)
T 3f3f_A          124 -----------------G----LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP  182 (351)
T ss_dssp             -----------------C----SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC
T ss_pred             -----------------C----cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC
Confidence                             0    012244578999999998877554443             68899999999997   9


Q ss_pred             CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCcEEE
Q 004255          382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHV  457 (765)
Q Consensus       382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~Las~S~dgTVhI  457 (765)
                      .+|++++.++ .+.+|+...       +        ....+..+. + +...|.+++|+|++    ++|++++.||+|+|
T Consensus       183 ~~l~~~~~~~-~~~~~~~~~-------~--------~~~~~~~~~-~-h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          183 EKLAVSALEQ-AIIYQRGKD-------G--------KLHVAAKLP-G-HKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             CEEEEEETTE-EEEEEECTT-------S--------CEEEEEECC-C-CCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             cEEEEecCCC-cEEEEccCC-------C--------ceeeeeecC-C-CCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            9999999966 466666533       2        112233432 3 34579999999998    89999999999999


Q ss_pred             EeCCCCC
Q 004255          458 FVLSPFG  464 (765)
Q Consensus       458 wdl~~~g  464 (765)
                      ||+....
T Consensus       245 wd~~~~~  251 (351)
T 3f3f_A          245 FKITEKL  251 (351)
T ss_dssp             EEEEECC
T ss_pred             EeCCCCc
Confidence            9998643

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.76  E-value=4.8e-17  Score=177.83  Aligned_cols=113  Identities=17%  Similarity=0.185  Sum_probs=82.3

Q ss_pred             cccCCCCeEEEEECCC-CcEEE-------EeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255          343 ADMDNAGIVVVKDFVT-RAIIS-------QFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKY  413 (765)
Q Consensus       343 ~~~~~dG~V~IwDl~s-~~~i~-------~~~aH~~~IsaLaFSpdG-~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~  413 (765)
                      +.+ .||.|+|||+.+ ++.+.       .+.+|...|.+++|+|+| ++||+++.||+ |+|||+.....    .    
T Consensus       193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~----~----  262 (447)
T 3dw8_B          193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRASAL----C----  262 (447)
T ss_dssp             EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTTCSS----S----
T ss_pred             EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcCCcc----c----
Confidence            345 699999999994 44444       367999999999999999 99999999775 99999965210    0    


Q ss_pred             ccCCcceEEEEEeccccc-----------ccEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CCCCcccccc
Q 004255          414 DWNSSHVHLYKLHRGITS-----------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSP-FGGDSGFQTL  472 (765)
Q Consensus       414 ~~~~s~~~l~~l~rG~~~-----------a~I~slaFSpDg~~Las~S~dgTVhIwdl~~-~gg~~~~~~h  472 (765)
                           ...+..+. ++..           ..|.+++|+|||++|++++. ++|+|||+.. ......+..|
T Consensus       263 -----~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          263 -----DRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             -----CTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred             -----cceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence                 00123332 2221           26999999999999999999 9999999986 3323334444

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.75  E-value=2.5e-16  Score=173.26  Aligned_cols=227  Identities=15%  Similarity=0.150  Sum_probs=156.5

Q ss_pred             CCEEEEEECCCCeEEEEEeCC---CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~  245 (765)
                      +++|+|||+.+|++++.++++   ..|.+|+|++  ++||+|. ++.|+|||+.++++++++..|...            
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~------------  191 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------  191 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc------------
Confidence            369999999999999988753   4799999998  6888876 457999999999999988877652            


Q ss_pred             ccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCC
Q 004255          246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (765)
Q Consensus       246 ~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s  325 (765)
                       ...++..++.|+.++.+..+.     .|+....           ...+                .++.++....     
T Consensus       192 -v~~~s~~~~~l~sgs~d~~i~-----~~d~~~~-----------~~~~----------------~~~~~h~~~~-----  233 (420)
T 4gga_A          192 -VGSLSWNSYILSSGSRSGHIH-----HHDVRVA-----------EHHV----------------ATLSGHSQEV-----  233 (420)
T ss_dssp             -EEEEEEETTEEEEEETTSEEE-----EEETTSS-----------SCEE----------------EEEECCSSCE-----
T ss_pred             -eEEEeeCCCEEEEEeCCCcee-----Eeeeccc-----------ceee----------------EEecccccce-----
Confidence             345667778888887653221     1111110           0000                1111111110     


Q ss_pred             CCCccCCCccccccccccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEECCCC-CEEEEEE-cCCCEEEEEeC
Q 004255          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSG-TLLVTAS-VYGNNINIFRI  399 (765)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~aH~~~IsaLaFSpdG-~lLATaS-~dGt~IrVWdi  399 (765)
                       ......+.++    .++.+..||.|+|||+.+++    .+..+..|..+|.+++|+|++ .+|++++ ..++.|+|||+
T Consensus       234 -~~~~~~~~g~----~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~  308 (420)
T 4gga_A          234 -CGLRWAPDGR----HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV  308 (420)
T ss_dssp             -EEEEECTTSS----EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred             -eeeeecCCCC----eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence             0011111111    24467789999999998765    456678899999999999964 5666653 23457999999


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCCCCccccccc
Q 004255          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S--~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      .+       |          ..+..+..   ...|.++.|+|+++.|++++  .|++|+|||+........+.+|.
T Consensus       309 ~t-------~----------~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~  364 (420)
T 4gga_A          309 CS-------G----------ACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT  364 (420)
T ss_dssp             TT-------T----------EEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred             Cc-------c----------ccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC
Confidence            65       3          45555542   24589999999999998876  79999999998766666677785

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.75  E-value=1.7e-16  Score=175.72  Aligned_cols=103  Identities=18%  Similarity=0.286  Sum_probs=83.8

Q ss_pred             ccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255          344 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~---~~i~~~~aH~~~IsaLaFSpdG~-lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~  419 (765)
                      .+..+|.|+|||+.++   +.+..+.+|..+|.+|+|+|+|. +||+++.|| .|+|||++..      +          
T Consensus       249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~------~----------  311 (430)
T 2xyi_A          249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNL------K----------  311 (430)
T ss_dssp             EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCT------T----------
T ss_pred             EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCC------C----------
Confidence            3457899999999987   57788899999999999999997 789999966 5999999641      1          


Q ss_pred             eEEEEEecccccccEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCC
Q 004255          420 VHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~-~Las~S~dgTVhIwdl~~~gg  465 (765)
                      ..+..+. + +...|.+|+|+|+++ +|++++.|++|+|||+...+.
T Consensus       312 ~~~~~~~-~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          312 LKLHSFE-S-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             SCSEEEE-C-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             CCeEEee-c-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            2344554 2 345799999999995 699999999999999987543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.74  E-value=1.8e-16  Score=173.07  Aligned_cols=216  Identities=14%  Similarity=0.118  Sum_probs=154.8

Q ss_pred             CCEEEEEECCCCeEEEEEeC--CCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~--~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~  246 (765)
                      +++|++||+.+++.+..+..  ...|.+|++++  ++|+++. ++.|++||+.+++.+.++..|..+             
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------  178 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR-------------  178 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------
T ss_pred             CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc-------------
Confidence            47899999999999988876  56899999987  6787776 567999999999998888766552             


Q ss_pred             cceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255          247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (765)
Q Consensus       247 ~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~  326 (765)
                      ...+++.+++|++++.+..+     ..|+....           +..+                +++.++..      ..
T Consensus       179 v~~~~~~~~~l~~~~~dg~i-----~i~d~~~~-----------~~~~----------------~~~~~~~~------~v  220 (401)
T 4aez_A          179 VGCLSWNRHVLSSGSRSGAI-----HHHDVRIA-----------NHQI----------------GTLQGHSS------EV  220 (401)
T ss_dssp             EEEEEEETTEEEEEETTSEE-----EEEETTSS-----------SCEE----------------EEEECCSS------CE
T ss_pred             eEEEEECCCEEEEEcCCCCE-----EEEecccC-----------ccee----------------eEEcCCCC------Ce
Confidence            34577777888888765321     12222110           0000                11111110      01


Q ss_pred             CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEE--cCCCEEEEEeCCCCc
Q 004255          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTAS--VYGNNINIFRIMPSC  403 (765)
Q Consensus       327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG-~lLATaS--~dGt~IrVWdi~~~~  403 (765)
                      ..+.++++++    .++.+..||.|+|||+.+++.+..+.+|..+|.+++|+|+| .+|++++  .|| .|++||+..  
T Consensus       221 ~~~~~~~~~~----~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~-~i~i~d~~~--  293 (401)
T 4aez_A          221 CGLAWRSDGL----QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK-QIHFWNAAT--  293 (401)
T ss_dssp             EEEEECTTSS----EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC-EEEEEETTT--
T ss_pred             eEEEEcCCCC----EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC-EEEEEECCC--
Confidence            1122222222    24567789999999999999999999999999999999976 5667765  544 699999965  


Q ss_pred             ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCcEEEEeCCCC
Q 004255          404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPF  463 (765)
Q Consensus       404 ~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S--~dgTVhIwdl~~~  463 (765)
                           +          ..+..+.   +...|.+++|+||+++|++++  .||+|+||++...
T Consensus       294 -----~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          294 -----G----------ARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             -----C----------CEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             -----C----------CEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence                 3          3555554   234699999999999999954  8999999999763

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.3e-16  Score=177.30  Aligned_cols=100  Identities=13%  Similarity=0.080  Sum_probs=82.5

Q ss_pred             CCCCeEEEEECCCCcEEE----EeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255          346 DNAGIVVVKDFVTRAIIS----QFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~----~~~aH~~~IsaLaFSpd---G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s  418 (765)
                      ..+|.|.+||+.+++...    .+.+|..+|.+|+|+|+   |++|++++.|++ |+|||+..       +         
T Consensus       168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~-------~---------  230 (450)
T 2vdu_B          168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQ-------C---------  230 (450)
T ss_dssp             ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESC-------T---------
T ss_pred             eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCC-------C---------
Confidence            357889999998876544    78899999999999999   999999999765 99999854       2         


Q ss_pred             ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       419 ~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                       ..+..+..|+ ...|.+++|+ |+++|++++.|++|+|||+.....
T Consensus       231 -~~~~~~~~~h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          231 -FIVDKWLFGH-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN  274 (450)
T ss_dssp             -TCEEEECCCC-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred             -ceeeeeecCC-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence             2445544453 4579999999 999999999999999999987543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.73  E-value=1.7e-16  Score=172.70  Aligned_cols=55  Identities=11%  Similarity=0.189  Sum_probs=47.2

Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~Is-aLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                      ++..||+|+|||+.+++++.+|++|...+. +++|||||++|||||.|++ |||||+
T Consensus       300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~  355 (356)
T 2w18_A          300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY  355 (356)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred             EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence            455789999999999999999999987655 6999999999999999765 999995

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=9.7e-17  Score=171.55  Aligned_cols=104  Identities=15%  Similarity=0.181  Sum_probs=83.6

Q ss_pred             ccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      +++.||+|+|||+.+++.+..+. .|..+|.+++|+|+|.+||+|+.||. |+|||+..       +          ..+
T Consensus       144 s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~~-------~----------~~~  205 (343)
T 3lrv_A          144 WADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSS-------P----------DQA  205 (343)
T ss_dssp             EEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESSC-------T----------TSC
T ss_pred             EEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCC-------C----------CCC
Confidence            45689999999999999877764 45668999999999999999999775 99999965       2          122


Q ss_pred             -EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 004255          423 -YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS  467 (765)
Q Consensus       423 -~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~  467 (765)
                       ..+. +.+...|.+|+|+|||++|+++++ ++|+|||+.......
T Consensus       206 ~~~~~-~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~  249 (343)
T 3lrv_A          206 SSRFP-VDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTL  249 (343)
T ss_dssp             CEECC-CCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCB
T ss_pred             ccEEe-ccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcce
Confidence             3443 323467999999999999999995 499999998755433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.72  E-value=1.4e-15  Score=157.84  Aligned_cols=225  Identities=14%  Similarity=0.127  Sum_probs=148.6

Q ss_pred             CEEEEEECCCCeEEEEEeCC---CCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG  246 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~  246 (765)
                      ++|+|||+.+|++++.++++   ..|.+|++++  ++||+|. ++.|++||+.++++++++..|...             
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-------------  111 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-------------  111 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-------------
Confidence            68999999999999999754   4799999988  6787765 567999999999999998877652             


Q ss_pred             cceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255          247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (765)
Q Consensus       247 ~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~  326 (765)
                      ...++..++.|+.++.+....     .+.....           ..                ..+++.++...      .
T Consensus       112 ~~~~~~~~~~l~s~~~~~~~~-----~~~~~~~-----------~~----------------~~~~~~~~~~~------~  153 (318)
T 4ggc_A          112 VGSLSWNSYILSSGSRSGHIH-----HHDVRVA-----------EH----------------HVATLSGHSQE------V  153 (318)
T ss_dssp             EEEEEEETTEEEEEETTSEEE-----EEETTSS-----------SC----------------EEEEEECCSSC------E
T ss_pred             EEEeecCCCEEEEEecCCceE-----eeecCCC-----------ce----------------eEEEEcCccCc------e
Confidence            233455558888877653211     0110000           00                00111111100      0


Q ss_pred             CCccCCCccccccccccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCEE---EEEEcCCCEEEEEeC
Q 004255          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLL---VTASVYGNNINIFRI  399 (765)
Q Consensus       327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~aH~~~IsaLaFSpdG~lL---ATaS~dGt~IrVWdi  399 (765)
                      ....+.+.++    .++++..||+|+|||+.+++    .......|..+|.+++|+|++..+   ++++. +..|+|||.
T Consensus       154 ~~~~~~~~~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~i~lwd~  228 (318)
T 4ggc_A          154 CGLRWAPDGR----HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-DRHIRIWNV  228 (318)
T ss_dssp             EEEEECTTSS----EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT-TCEEEEEET
T ss_pred             EEEEEcCCCC----EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC-CCEEEEEec
Confidence            0011111111    23467789999999998865    345566789999999999976643   34445 456999998


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCCCCccccccc
Q 004255          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S--~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      ..       +          .......   +...|..++|+|+++++++++  .|++|+|||+........+.+|.
T Consensus       229 ~~-------~----------~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~  284 (318)
T 4ggc_A          229 CS-------G----------ACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT  284 (318)
T ss_dssp             TT-------C----------CEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred             cc-------c----------ccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC
Confidence            54       1          2222222   234689999999999988765  79999999998766555667774

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.72  E-value=3.8e-16  Score=164.50  Aligned_cols=260  Identities=13%  Similarity=0.040  Sum_probs=160.9

Q ss_pred             CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 004255           95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA  174 (765)
Q Consensus        95 g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t  174 (765)
                      .+..+++..|.+.|.+|++.|+.          ....+|++.+.                                 +++
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~----------~~g~~l~~~~~---------------------------------dg~   65 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPT----------LPGNFLIAGSW---------------------------------AND   65 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTT----------SSSEEEEEEET---------------------------------TSE
T ss_pred             cceeEeccCCCCceEEEEEcCCC----------CCceEEEEECC---------------------------------CCc
Confidence            34566788999999999999741          00236654221                                 368


Q ss_pred             EEEEECCC-CeEE-EEEe-CCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255          175 VRFYSFQS-HCYE-HVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (765)
Q Consensus       175 V~lWdlkt-g~~v-~tL~-~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (765)
                      |+|||+.+ ++.+ ..+. +...|.++++++  ++|+++. ++.|++||+.+++.+. +..|..+             ..
T Consensus        66 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~-------------v~  131 (368)
T 3mmy_A           66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAP-------------VK  131 (368)
T ss_dssp             EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSC-------------EE
T ss_pred             EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCc-------------eE
Confidence            99999997 6555 6665 457999999987  5777765 5679999999988665 3445442             34


Q ss_pred             eeEE--cc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255          249 PMAV--GP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (765)
Q Consensus       249 ~~Al--sp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~  324 (765)
                      .+++  ++  ++|++++.+..+     ..|+..+..            .+                .++....       
T Consensus       132 ~~~~~~~~~~~~l~~~~~dg~i-----~vwd~~~~~------------~~----------------~~~~~~~-------  171 (368)
T 3mmy_A          132 TIHWIKAPNYSCVMTGSWDKTL-----KFWDTRSSN------------PM----------------MVLQLPE-------  171 (368)
T ss_dssp             EEEEEECSSCEEEEEEETTSEE-----EEECSSCSS------------CS----------------EEEECSS-------
T ss_pred             EEEEEeCCCCCEEEEccCCCcE-----EEEECCCCc------------EE----------------EEEecCC-------
Confidence            5777  55  678887765311     123322210            00                0000000       


Q ss_pred             CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE-e-ccCCCCeEEEEECCCCCE----EEEEEcCCCEEEEEe
Q 004255          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ-F-KAHTSPISALCFDPSGTL----LVTASVYGNNINIFR  398 (765)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~-~-~aH~~~IsaLaFSpdG~l----LATaS~dGt~IrVWd  398 (765)
                      ......+..      .....+..++.+.+||+........ + ..+...+.++++.+++..    |++++.+| .|+|||
T Consensus       172 ~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~  244 (368)
T 3mmy_A          172 RCYCADVIY------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG-RVAIHY  244 (368)
T ss_dssp             CEEEEEEET------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS-EEEEEE
T ss_pred             CceEEEecC------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC-cEEEEe
Confidence            000000000      0122455688999999987654332 2 234556677777666554    99999966 599999


Q ss_pred             CCCCcccCCCCCCccccCCcceEEEEEeccccc-----------ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 004255          399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS  467 (765)
Q Consensus       399 i~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~-----------a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~  467 (765)
                      +....              ....+..+. ++..           ..|.+++|+||+++|++++.||+|+|||+.......
T Consensus       245 ~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  309 (368)
T 3mmy_A          245 INPPN--------------PAKDNFTFK-CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK  309 (368)
T ss_dssp             SSCSC--------------HHHHSEEEE-CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCCCC--------------ccccceeee-eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence            96520              001223332 2211           159999999999999999999999999998654444


Q ss_pred             cccccc
Q 004255          468 GFQTLS  473 (765)
Q Consensus       468 ~~~~h~  473 (765)
                      .+..|.
T Consensus       310 ~~~~~~  315 (368)
T 3mmy_A          310 TSEQLD  315 (368)
T ss_dssp             ECCCCS
T ss_pred             EecCCC
Confidence            445553

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.72  E-value=3e-15  Score=163.39  Aligned_cols=229  Identities=11%  Similarity=0.133  Sum_probs=159.7

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceE-----eeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNE-----LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG  147 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~e-----lls~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~  147 (765)
                      .+++++++..++ +++||++ .+++..     .+..|.+.|..+++.|+             ..+++. +..        
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~s-~~~--------  189 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDIN-SGQTVRLSPPEKYKKKLGFVETISIPEH-------------NELWVS-QMQ--------  189 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETT-TCCEEEECCCHHHHTTCCEEEEEEEGGG-------------TEEEEE-EGG--------
T ss_pred             CCeEEEEeCCCCeEEEEECC-CCeEeeecCcccccccCCceeEEEEcCC-------------CEEEEE-ECC--------
Confidence            467888887765 9999995 465655     33466788999998753             225543 221        


Q ss_pred             CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeE-EEE-eCCeEEEEECCCCc
Q 004255          148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIV-AVG-LATQIYCFDALTLE  222 (765)
Q Consensus       148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~L-aV~-~~~~I~iwD~~t~~  222 (765)
                                              +++|++||+++++.+.++..+ ..+..+++++  +.| +++ .++.|++||+.+++
T Consensus       190 ------------------------d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~  245 (433)
T 3bws_A          190 ------------------------ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL  245 (433)
T ss_dssp             ------------------------GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             ------------------------CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence                                    368999999999999999754 5899999987  455 445 35689999999987


Q ss_pred             eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhh
Q 004255          223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME  300 (765)
Q Consensus       223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d  300 (765)
                      .+..+..+..              ...++++|  ++|++++...                          +         
T Consensus       246 ~~~~~~~~~~--------------~~~~~~~~~g~~l~~~~~~~--------------------------~---------  276 (433)
T 3bws_A          246 EIRKTDKIGL--------------PRGLLLSKDGKELYIAQFSA--------------------------S---------  276 (433)
T ss_dssp             EEEECCCCSE--------------EEEEEECTTSSEEEEEEEES--------------------------C---------
T ss_pred             EEEEecCCCC--------------ceEEEEcCCCCEEEEEECCC--------------------------C---------
Confidence            7655433211              12345554  3444332100                          0         


Q ss_pred             hhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 004255          301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS  380 (765)
Q Consensus       301 ~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd  380 (765)
                                                         .       ....||.|++||+.+++.+..+ .|...+.+++|+|+
T Consensus       277 -----------------------------------~-------~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~  313 (433)
T 3bws_A          277 -----------------------------------N-------QESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNT  313 (433)
T ss_dssp             -----------------------------------T-------TCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSS
T ss_pred             -----------------------------------c-------cccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCC
Confidence                                               0       0025789999999999877665 55668999999999


Q ss_pred             CCEE-EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC--------
Q 004255          381 GTLL-VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS--------  451 (765)
Q Consensus       381 G~lL-ATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~--------  451 (765)
                      |+.| ++++. +..|++||+..       +          ..+..+.   ....+.+++|+|||++|++++.        
T Consensus       314 g~~l~~~~~~-~~~v~v~d~~~-------~----------~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  372 (433)
T 3bws_A          314 ENKIYVSDMC-CSKIEVYDLKE-------K----------KVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEG  372 (433)
T ss_dssp             TTEEEEEETT-TTEEEEEETTT-------T----------EEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred             CCEEEEEecC-CCEEEEEECCC-------C----------cEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence            9865 55555 55799999854       2          3444443   2345899999999999998887        


Q ss_pred             -------CCcEEEEeCCC
Q 004255          452 -------KGTCHVFVLSP  462 (765)
Q Consensus       452 -------dgTVhIwdl~~  462 (765)
                             ||+|++||+..
T Consensus       373 ~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          373 YLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             TTSCCSSCCEEEEEETTT
T ss_pred             cccccccceEEEEEECCC
Confidence                   57999999865

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.71  E-value=5.9e-16  Score=169.63  Aligned_cols=199  Identities=9%  Similarity=0.031  Sum_probs=116.3

Q ss_pred             CCEEEEEECCCCeEEEEE-----e-CCCCEEEEEecC----------CeEEEEe-CCeEEEEECCCCceeEEEEecCCcc
Q 004255          172 PTAVRFYSFQSHCYEHVL-----R-FRSSVCMVRCSP----------RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQ  234 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL-----~-~~s~V~sV~~s~----------~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~  234 (765)
                      +++|+|||+++++.....     . +.+.|.+|+|+|          ++||++. |++|+|||+.+.+++..+..+..+ 
T Consensus       110 d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~-  188 (393)
T 4gq1_A          110 DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP-  188 (393)
T ss_dssp             TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC-
T ss_pred             CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC-
Confidence            479999999999875432     2 346999999975          5788765 567999999988887777776653 


Q ss_pred             cCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccce
Q 004255          235 LAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK  311 (765)
Q Consensus       235 ~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~k  311 (765)
                                  ...++|+|   ++|+.++.+                                                
T Consensus       189 ------------v~~v~~~p~~~~~l~~~~~d------------------------------------------------  208 (393)
T 4gq1_A          189 ------------GISVQFRPSNPNQLIVGERN------------------------------------------------  208 (393)
T ss_dssp             ------------EEEEEEETTEEEEEEEEETT------------------------------------------------
T ss_pred             ------------cEEEEECCCCCceEEecCCC------------------------------------------------
Confidence                        24567766   356665543                                                


Q ss_pred             eecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-------------------------EEEEec
Q 004255          312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-------------------------IISQFK  366 (765)
Q Consensus       312 tls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~-------------------------~i~~~~  366 (765)
                                                           |+|+|||+.+++                         ......
T Consensus       209 -------------------------------------~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          209 -------------------------------------GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             -------------------------------------SEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             -------------------------------------CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence                                                 233333332221                         112335


Q ss_pred             cCCCCeEEEEEC-CCCCEEEEEEcCCCEEEEEeCCCCcccCC-CCCCccccCCc-ceEEEEEecccccccEEEEEEcc--
Q 004255          367 AHTSPISALCFD-PSGTLLVTASVYGNNINIFRIMPSCMRSG-SGNHKYDWNSS-HVHLYKLHRGITSATIQDICFSH--  441 (765)
Q Consensus       367 aH~~~IsaLaFS-pdG~lLATaS~dGt~IrVWdi~~~~~~~~-sG~~~~~~~~s-~~~l~~l~rG~~~a~I~slaFSp--  441 (765)
                      +|...|.+++|+ |||++|++++.|+ .++|||+........ .+.....+... ......+.   ....+..+.|+|  
T Consensus       252 ~~~~~v~~v~~~~~dg~~l~s~s~d~-~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  327 (393)
T 4gq1_A          252 GIASSLANVRWIGSDGSGILAMCKSG-AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS---LFPSLLGACPHPRY  327 (393)
T ss_dssp             CCSSSCSEEEEETTTTCEEEEECTTS-EEEEEEC-------------------CCSCSEEEEC---SSCCSSCCEECSSC
T ss_pred             cccccceeeeeecCCCCEEEEEeCCC-CEEEEECccCCCCceEeeecCccccEEEcccccccc---ccCcceeEEEccCC
Confidence            788999999997 8999999999955 699999865211000 00000000000 00011111   111122234443  


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255          442 YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       442 Dg~~Las~S~dgTVhIwdl~~~gg~~~~~~h  472 (765)
                      |+.++++++.||+|+|||+.+......+..|
T Consensus       328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~  358 (393)
T 4gq1_A          328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQL  358 (393)
T ss_dssp             TTEEEEEETTTTEEEEEETTCTTCCEEEEEC
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence            4557888899999999999875544444444

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.71  E-value=4e-15  Score=164.88  Aligned_cols=236  Identities=14%  Similarity=0.079  Sum_probs=161.4

Q ss_pred             CeEEEEEec------CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCC
Q 004255           75 KQVLLLGYQ------NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ  148 (765)
Q Consensus        75 ~~vL~~G~~------~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~  148 (765)
                      .+++.++..      ..+++||++  +.....+..|.+.|..+++.|+.             ..||.++.+.        
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~--g~~~~~l~~~~~~v~~~~~Spdg-------------~~la~~s~~~--------  200 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYD--GYNQFVVHRSPQPLMSPAWSPDG-------------SKLAYVTFES--------  200 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETT--SCSCEEEEEESSCEEEEEECTTS-------------SEEEEEECTT--------
T ss_pred             CEEEEEEecCCCCccceEEEEcCC--CCCCEEEeCCCCcceeeEEcCCC-------------CEEEEEEecC--------
Confidence            355555554      359999995  33456677788899999999852             2666644321        


Q ss_pred             CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEE-EEeC---CeEEEEECCCCc
Q 004255          149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVA-VGLA---TQIYCFDALTLE  222 (765)
Q Consensus       149 ~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~La-V~~~---~~I~iwD~~t~~  222 (765)
                                            ...+|++||+++++......+...+.+++++|  +.|+ ++..   ..|++||+.+++
T Consensus       201 ----------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          201 ----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             ----------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             ----------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence                                  02589999999999876666778999999998  5676 4432   359999999886


Q ss_pred             eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhh
Q 004255          223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME  300 (765)
Q Consensus       223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d  300 (765)
                      . ..+..+..             ....++++|  ++|++++..                                     
T Consensus       259 ~-~~l~~~~~-------------~~~~~~~spdg~~l~~~s~~-------------------------------------  287 (415)
T 2hqs_A          259 I-RQVTDGRS-------------NNTEPTWFPDSQNLAFTSDQ-------------------------------------  287 (415)
T ss_dssp             E-EECCCCSS-------------CEEEEEECTTSSEEEEEECT-------------------------------------
T ss_pred             E-EeCcCCCC-------------cccceEECCCCCEEEEEECC-------------------------------------
Confidence            5 34433332             123456655  455554321                                     


Q ss_pred             hhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 004255          301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS  380 (765)
Q Consensus       301 ~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd  380 (765)
                                                                   .....|.+||+.+++. ..+..|...+.+++|+||
T Consensus       288 ---------------------------------------------~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd  321 (415)
T 2hqs_A          288 ---------------------------------------------AGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD  321 (415)
T ss_dssp             ---------------------------------------------TSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTT
T ss_pred             ---------------------------------------------CCCcEEEEEECCCCCE-EEEecCCCcccCeEECCC
Confidence                                                         0012577889888764 456677788999999999


Q ss_pred             CCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC---cE
Q 004255          381 GTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG---TC  455 (765)
Q Consensus       381 G~lLATaS~dG--t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg---TV  455 (765)
                      |++|++++.++  ..|.+||+..       +           .+..+..+   ..+.+++|+|||++|+.++.++   .+
T Consensus       322 G~~l~~~~~~~g~~~i~~~d~~~-------~-----------~~~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l  380 (415)
T 2hqs_A          322 GKFMVMVSSNGGQQHIAKQDLAT-------G-----------GVQVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVL  380 (415)
T ss_dssp             SSEEEEEEECSSCEEEEEEETTT-------C-----------CEEECCCS---SSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             CCEEEEEECcCCceEEEEEECCC-------C-----------CEEEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEE
Confidence            99999988752  4799999854       2           22334322   2689999999999999999887   78


Q ss_pred             EEEeCCCCCCCcccccccC
Q 004255          456 HVFVLSPFGGDSGFQTLSS  474 (765)
Q Consensus       456 hIwdl~~~gg~~~~~~h~~  474 (765)
                      .+||+.. +....+..|..
T Consensus       381 ~~~d~~g-~~~~~l~~~~~  398 (415)
T 2hqs_A          381 NLVSTDG-RFKARLPATDG  398 (415)
T ss_dssp             EEEETTS-CCEEECCCSSS
T ss_pred             EEEECCC-CcEEEeeCCCC
Confidence            9999862 33344555543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.70  E-value=8.1e-16  Score=183.34  Aligned_cols=211  Identities=14%  Similarity=0.162  Sum_probs=145.4

Q ss_pred             eEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 004255           98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF  177 (765)
Q Consensus        98 ~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~l  177 (765)
                      ..++..|.++|.++++.|+             ..+|++.+.                                 +++|+|
T Consensus         2 ~~~l~gH~~~V~~l~~s~d-------------g~~latg~~---------------------------------dg~I~v   35 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYY-------------GKRLATCSS---------------------------------DKTIKI   35 (753)
T ss_dssp             ------CCCCEEEECCCSS-------------SCCEEEEET---------------------------------TTEEEE
T ss_pred             eeecccCcceeEEEEECCC-------------CCeEEEEEC---------------------------------CCcEEE
Confidence            3567889999999999874             235654221                                 368999


Q ss_pred             EECC--CCeEEEEEeC-CCCEEEEEec----CCeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCcccccccc
Q 004255          178 YSFQ--SHCYEHVLRF-RSSVCMVRCS----PRIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       178 Wdlk--tg~~v~tL~~-~s~V~sV~~s----~~~LaV~~-~~~I~iwD~~t~~--~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      ||+.  +++.+.++.. .+.|.+++++    .++|+++. ++.|++||+.+++  ....+..|..+             .
T Consensus        36 wd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~-------------V  102 (753)
T 3jro_A           36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS-------------V  102 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------E
T ss_pred             EecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC-------------e
Confidence            9998  5577778875 4699999997    35677655 5689999998876  33333333331             1


Q ss_pred             ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (765)
Q Consensus       248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~  327 (765)
                      ..++++|       +..                          +.                                   
T Consensus       103 ~~v~~sp-------~~~--------------------------~~-----------------------------------  114 (753)
T 3jro_A          103 NSVQWAP-------HEY--------------------------GP-----------------------------------  114 (753)
T ss_dssp             EEEEECC-------GGG--------------------------CS-----------------------------------
T ss_pred             EEEEECC-------CCC--------------------------CC-----------------------------------
Confidence            2233322       100                          00                                   


Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECC-------------CCCEEEEEEcCCC
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDP-------------SGTLLVTASVYGN  392 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~aH~~~IsaLaFSp-------------dG~lLATaS~dGt  392 (765)
                                   .++.++.||.|+|||+.++.  ....+.+|..+|.+++|+|             +|.+|++++.||+
T Consensus       115 -------------~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~  181 (753)
T 3jro_A          115 -------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL  181 (753)
T ss_dssp             -------------EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred             -------------EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence                         01234578999999998873  4556789999999999999             5999999999776


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCC
Q 004255          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD---g~~Las~S~dgTVhIwdl~~~g  464 (765)
                       |++||+...       .      .....+..+. + +...|.+++|+||   +++|++++.||+|+|||+....
T Consensus       182 -I~iwd~~~~-------~------~~~~~~~~~~-~-h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          182 -VKIWKYNSD-------A------QTYVLESTLE-G-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             -EEEEEEETT-------T------TEEEEEEEEC-C-CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             -EEEEeccCC-------c------ccceeeeeec-C-CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence             999998641       0      0012333443 3 3457999999999   9999999999999999998754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.68  E-value=4.3e-14  Score=147.47  Aligned_cols=280  Identities=11%  Similarity=0.075  Sum_probs=164.3

Q ss_pred             eEEEEEecC-cEEEEEccCCCcceEeeeeccC--CEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDG--PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        76 ~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg--~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      ++|+++..+ .+++||+. .+++...+.....  .+..+++.|+             ...|+++..+             
T Consensus         2 ~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~d-------------g~~l~v~~~~-------------   54 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTE-KMAVDKVITIADAGPTPMVPMVAPG-------------GRIAYATVNK-------------   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETT-TTEEEEEEECTTCTTCCCCEEECTT-------------SSEEEEEETT-------------
T ss_pred             cEEEEcCCCCeEEEEECC-CCcEEEEEEcCCCCCCccceEEcCC-------------CCEEEEEeCC-------------
Confidence            356666555 59999995 4555555543321  4677788764             2244443321             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------CEEEEEecC--CeEEEEe-------------CC
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-------------AT  211 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s------~V~sV~~s~--~~LaV~~-------------~~  211 (765)
                                         .+.|.+||+.+++.+..+.+..      .+..+++++  +.|+++.             ++
T Consensus        55 -------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T 1pby_B           55 -------------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             -------------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred             -------------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence                               2589999999999999888754      677888876  5777773             57


Q ss_pred             eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCC--ccccCCCCCC--CCCCCC
Q 004255          212 QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNS--GRLSPQNLTP--SGVSPS  285 (765)
Q Consensus       212 ~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~--G~~s~~~lt~--~~~s~s  285 (765)
                      .|++||+.+++.+..+.....              ...++++|  ++|++++....+...  +... ..+..  ...+..
T Consensus       116 ~i~v~d~~~~~~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~  180 (337)
T 1pby_B          116 RVALYDAETLSRRKAFEAPRQ--------------ITMLAWARDGSKLYGLGRDLHVMDPEAGTLV-EDKPIQSWEAETY  180 (337)
T ss_dssp             EEEEEETTTTEEEEEEECCSS--------------CCCEEECTTSSCEEEESSSEEEEETTTTEEE-EEECSTTTTTTTB
T ss_pred             eEEEEECCCCcEEEEEeCCCC--------------cceeEECCCCCEEEEeCCeEEEEECCCCcEe-eeeeccccCCCce
Confidence            899999999987776654221              13467887  677776433222211  1100 00000  000111


Q ss_pred             cCCCCCcceeeehhhhhhhhhcccceee-cccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE-E
Q 004255          286 TSPGGSSLVARYAMEHSKQFAAGLSKTL-SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-S  363 (765)
Q Consensus       286 ~sp~~gslva~~a~d~~k~la~G~~ktl-s~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i-~  363 (765)
                      ++|++..+.+....       .   +.+ .-|......++           .     .........|.+||+.+++.. .
T Consensus       181 ~s~dg~~l~~~~~~-------~---~~~~~~~~~~~~~~~-----------~-----~~~~~~~~~v~~~d~~~~~~~~~  234 (337)
T 1pby_B          181 AQPDVLAVWNQHES-------S---GVMATPFYTARKDID-----------P-----ADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             CCCBCCCCCCCCTT-------T---TEEEEEEEEEBTTSC-----------T-----TSGGGEEEEEEEEETTTCCEEEE
T ss_pred             eCCCccEEeeeccC-------C---Cceeeeeeccccccc-----------c-----ccccccccceEEEeCCCCCceEe
Confidence            12221111000000       0   000 00000000000           0     000011126899999998864 3


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (765)
Q Consensus       364 ~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (765)
                      .+..|...+.+++|+|||++|+++  ++ .|.+||+..       +          ..+..+..+   ..+.+++|+|||
T Consensus       235 ~~~~~~~~~~~~~~s~dg~~l~~~--~~-~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg  291 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNPAKTRAFGA--YN-VLESFDLEK-------N----------ASIKRVPLP---HSYYSVNVSTDG  291 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE--ES-EEEEEETTT-------T----------EEEEEEECS---SCCCEEEECTTS
T ss_pred             ecCCCCCceeeEEECCCCCEEEEe--CC-eEEEEECCC-------C----------cCcceecCC---CceeeEEECCCC
Confidence            355677788999999999999988  24 599999854       3          344444432   347889999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCC
Q 004255          444 QWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      ++|++++.+++|++||+.....
T Consensus       292 ~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          292 STVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             CEEEEESBSSEEEEEETTTCCE
T ss_pred             CEEEEEcCCCcEEEEECcCCcE
Confidence            9999999999999999986543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.68  E-value=1.9e-15  Score=173.84  Aligned_cols=240  Identities=10%  Similarity=0.035  Sum_probs=155.5

Q ss_pred             CCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCC-C------Cc--cccCCEEEEEEcCCCC
Q 004255           73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGC-E------GF--RKLHPFLLVVAGEDTN  142 (765)
Q Consensus        73 ~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~-d------~f--~~srpLLavv~~d~~~  142 (765)
                      .+++.|++++.++ ++  |..    ..+.+.+|.+.|..|+++|++....-. +      .+  .+..+..++ .-.   
T Consensus        25 pDG~~iASas~D~TV~--d~~----~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v-awS---   94 (588)
T 2j04_A           25 RDGTLYLTTFPDISIG--QPK----YAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC-KPS---   94 (588)
T ss_dssp             TTSCEEEECSSSEEEE--EEC----CCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE-EEC---
T ss_pred             CCCCEEEEEcCCceee--ccc----ccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE-EEC---
Confidence            3588999988887 66  642    234456788889999999876221000 0      01  111111111 100   


Q ss_pred             CCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------CEEEEEecC--CeEEEEe-CCeE
Q 004255          143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-ATQI  213 (765)
Q Consensus       143 ~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s------~V~sV~~s~--~~LaV~~-~~~I  213 (765)
                                    .+|.+-..    ...+++|++||.++  ++..+. +.      .|.+|+|+|  ++||+|. +++|
T Consensus        95 --------------PdG~~LAs----~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV  153 (588)
T 2j04_A           95 --------------PIDDWMAV----LSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL  153 (588)
T ss_dssp             --------------SSSSCEEE----EETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred             --------------CCCCEEEE----EeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence                          12221100    11357899999654  777777 54      499999998  7888766 5689


Q ss_pred             EEEECCCCce-------eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCc
Q 004255          214 YCFDALTLEN-------KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST  286 (765)
Q Consensus       214 ~iwD~~t~~~-------l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~  286 (765)
                      +|||+.+++.       +.++..+...    + .   + ....++++|       +                        
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~g----h-~---~-~V~sVawSP-------d------------------------  193 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAG----S-K---D-WVTHIVWYE-------D------------------------  193 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTT----C-C---C-CEEEEEEET-------T------------------------
T ss_pred             EEEECCCCccccccceeeeeeeccccc----c-c---c-cEEEEEEcC-------C------------------------
Confidence            9999998753       4555433210    0 0   0 112233322       1                        


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE---EE
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI---IS  363 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~---i~  363 (765)
                          | ++                                                 .++.|++|++||+.+++.   ..
T Consensus       194 ----g-La-------------------------------------------------ass~D~tVrlWd~~~~~~~~~~~  219 (588)
T 2j04_A          194 ----V-LV-------------------------------------------------AALSNNSVFSMTVSASSHQPVSR  219 (588)
T ss_dssp             ----E-EE-------------------------------------------------EEETTCCEEEECCCSSSSCCCEE
T ss_pred             ----c-EE-------------------------------------------------EEeCCCeEEEEECCCCcccccee
Confidence                0 11                                                 223588999999988773   45


Q ss_pred             Ee-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE--c
Q 004255          364 QF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--S  440 (765)
Q Consensus       364 ~~-~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--S  440 (765)
                      ++ .+|...|.+++|+  |+.||+++. + .|++||+..       +           ++..+..| +.+.|++++|  |
T Consensus       220 tL~~~h~~~V~svaFs--g~~LASa~~-~-tIkLWd~~~-------~-----------~~~~~~~g-h~~~V~~va~~~s  276 (588)
T 2j04_A          220 MIQNASRRKITDLKIV--DYKVVLTCP-G-YVHKIDLKN-------Y-----------SISSLKTG-SLENFHIIPLNHE  276 (588)
T ss_dssp             EEECCCSSCCCCEEEE--TTEEEEECS-S-EEEEEETTT-------T-----------EEEEEECS-CCSCCCEEEETTC
T ss_pred             eecccccCcEEEEEEE--CCEEEEEeC-C-eEEEEECCC-------C-----------eEEEEEcC-CCceEEEEEeeeC
Confidence            67 4899999999999  799999984 5 699999854       2           34344446 5577999999  9


Q ss_pred             cCCCEEEEEeCCCcEEEEeCC
Q 004255          441 HYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       441 pDg~~Las~S~dgTVhIwdl~  461 (765)
                      ||++.|++++.||+ +||.++
T Consensus       277 ~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          277 KESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             SSCEEEEECSSCEE-EEEESS
T ss_pred             CCCCEEEEEcCCCC-EEEeec
Confidence            99999999999999 999987

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.66  E-value=2.8e-14  Score=149.98  Aligned_cols=274  Identities=7%  Similarity=-0.013  Sum_probs=166.8

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      +.+++++..++ +.+||++ .+++...+..+..++ .+++.|+             ...|+++..+              
T Consensus        10 ~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~-~~~~s~d-------------g~~l~~~~~~--------------   60 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTD-TLEILNQITLGYDFV-DTAITSD-------------CSNVVVTSDF--------------   60 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETT-TCCEEEEEECCCCEE-EEEECSS-------------SCEEEEEEST--------------
T ss_pred             CEEEEEecCCCeEEEEeCc-ccceeeeEEccCCcc-eEEEcCC-------------CCEEEEEeCC--------------
Confidence            56677777655 9999995 577767666555666 8888874             2245543321              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCCCCEEE-EEecC--CeEEEEeCC----eEEEEECCCCceeE
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFRSSVCM-VRCSP--RIVAVGLAT----QIYCFDALTLENKF  225 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~-v~tL~~~s~V~s-V~~s~--~~LaV~~~~----~I~iwD~~t~~~l~  225 (765)
                                        .++|.+||+.+++. +..+........ +++++  ++|+++..+    .|++||+.+++.+.
T Consensus        61 ------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~  122 (331)
T 3u4y_A           61 ------------------CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS  122 (331)
T ss_dssp             ------------------TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE
T ss_pred             ------------------CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE
Confidence                              25899999999997 777776654445 88887  577766655    89999999998877


Q ss_pred             EEEecCCcccCCCCccccccccceeEEcc--ceEEEecCC-ceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhh
Q 004255          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS  302 (765)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~-~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~  302 (765)
                      .+.....              ...++++|  ++|..+... ..    ....|+.-.           .+.+...      
T Consensus       123 ~~~~~~~--------------~~~~~~spdg~~l~~~~~~~~~----~i~~~~~~~-----------~g~~~~~------  167 (331)
T 3u4y_A          123 TIPIPYD--------------AVGIAISPNGNGLILIDRSSAN----TVRRFKIDA-----------DGVLFDT------  167 (331)
T ss_dssp             EEECCTT--------------EEEEEECTTSSCEEEEEETTTT----EEEEEEECT-----------TCCEEEE------
T ss_pred             EEECCCC--------------ccceEECCCCCEEEEEecCCCc----eEEEEEECC-----------CCcEeec------
Confidence            7654332              13578888  555554321 10    000111000           0000000      


Q ss_pred             hhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE---EEEeccCCCCeEEEEECC
Q 004255          303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI---ISQFKAHTSPISALCFDP  379 (765)
Q Consensus       303 k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~---i~~~~aH~~~IsaLaFSp  379 (765)
                         .   .+.+       ..........++++++...   .....++.|.+||+.+++.   +..+..+ ..+..++|+|
T Consensus       168 ---~---~~~~-------~~~~~~~~~~~spdg~~l~---v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~sp  230 (331)
T 3u4y_A          168 ---G---QEFI-------SGGTRPFNITFTPDGNFAF---VANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSR  230 (331)
T ss_dssp             ---E---EEEE-------CSSSSEEEEEECTTSSEEE---EEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECT
T ss_pred             ---C---Cccc-------cCCCCccceEECCCCCEEE---EEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECC
Confidence               0   0000       0000111223344443211   2344678999999999988   7777765 5668899999


Q ss_pred             CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc--ccc---cEEEEEEccCCCEEEEEeC-CC
Q 004255          380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI--TSA---TIQDICFSHYSQWIAIVSS-KG  453 (765)
Q Consensus       380 dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~--~~a---~I~slaFSpDg~~Las~S~-dg  453 (765)
                      ||++|+.++..+..|.+||+.+       +.        ...+..+..+.  ...   ...+++|+|||++|++++. ++
T Consensus       231 dg~~l~v~~~~~~~i~~~d~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  295 (331)
T 3u4y_A          231 DGSTVYVLTESTVDVFNFNQLS-------GT--------LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR  295 (331)
T ss_dssp             TSSEEEEECSSEEEEEEEETTT-------TE--------EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred             CCCEEEEEEcCCCEEEEEECCC-------Cc--------eeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence            9998877766556799999864       21        11233333221  111   1356899999999876655 56


Q ss_pred             cEEEEeCCC
Q 004255          454 TCHVFVLSP  462 (765)
Q Consensus       454 TVhIwdl~~  462 (765)
                      +|.|||+..
T Consensus       296 ~v~v~d~~~  304 (331)
T 3u4y_A          296 ELKVFTISG  304 (331)
T ss_dssp             EEEEEETTS
T ss_pred             cEEEEEecC
Confidence            999999975

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.65  E-value=5.9e-14  Score=161.71  Aligned_cols=287  Identities=15%  Similarity=0.118  Sum_probs=176.9

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      ++++++++.++ +.|||.+ ++++...+..+.. +..+++.|+             +.+|++...               
T Consensus       149 ~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~g~~-~~~v~~spd-------------g~~l~v~~~---------------  198 (543)
T 1nir_A          149 NLFSVTLRDAGQIALVDGD-SKKIVKVIDTGYA-VHISRMSAS-------------GRYLLVIGR---------------  198 (543)
T ss_dssp             GEEEEEEGGGTEEEEEETT-TCCEEEEEECSTT-EEEEEECTT-------------SCEEEEEET---------------
T ss_pred             CEEEEEEcCCCeEEEEECC-CceEEEEEecCcc-cceEEECCC-------------CCEEEEECC---------------
Confidence            57888888776 9999995 5777777764333 889999875             236665332               


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEEC--CCCeEEEEEeCCCCEEEEEecC------CeEEEEe--CCeEEEEECCCCce
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSF--QSHCYEHVLRFRSSVCMVRCSP------RIVAVGL--ATQIYCFDALTLEN  223 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdl--ktg~~v~tL~~~s~V~sV~~s~------~~LaV~~--~~~I~iwD~~t~~~  223 (765)
                                        +++|++||+  .+++++.++.....+..|++++      ++|+++.  +++|.+||..|+++
T Consensus       199 ------------------d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          199 ------------------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             ------------------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             ------------------CCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence                              258999999  8999999999877889999986      5777764  57899999999999


Q ss_pred             eEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhh
Q 004255          224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME  300 (765)
Q Consensus       224 l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp---r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d  300 (765)
                      +.++.+...... .+.+.. ......+++++   ++++....+..+     ..++..+.           ..+.      
T Consensus       261 ~~~i~~~g~~~~-~~~~~~-~~~v~~i~~s~~~~~~~vs~~~~g~i-----~vvd~~~~-----------~~l~------  316 (543)
T 1nir_A          261 KQIVSTRGMTVD-TQTYHP-EPRVAAIIASHEHPEFIVNVKETGKV-----LLVNYKDI-----------DNLT------  316 (543)
T ss_dssp             EEEEECCEECSS-SCCEES-CCCEEEEEECSSSSEEEEEETTTTEE-----EEEECTTS-----------SSCE------
T ss_pred             ceeecccCcccC-cccccc-CCceEEEEECCCCCEEEEEECCCCeE-----EEEEecCC-----------Ccce------
Confidence            998875321000 000000 00123455655   344443322111     01111000           0000      


Q ss_pred             hhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc----CCCCeEEEE
Q 004255          301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----HTSPISALC  376 (765)
Q Consensus       301 ~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a----H~~~IsaLa  376 (765)
                               ..++.       .........++++++..   .+....+++|.|||+.+++++..+..    |......+ 
T Consensus       317 ---------~~~i~-------~~~~~~~~~~spdg~~l---~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-  376 (543)
T 1nir_A          317 ---------VTSIG-------AAPFLHDGGWDSSHRYF---MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-  376 (543)
T ss_dssp             ---------EEEEE-------CCSSCCCEEECTTSCEE---EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred             ---------eEEec-------cCcCccCceECCCCCEE---EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence                     00000       00001122334444422   12344578999999999999988874    65544444 


Q ss_pred             ECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-----
Q 004255          377 FDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-----  450 (765)
Q Consensus       377 FSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-----  450 (765)
                      ++|+ |.++||++..+.+|.|||+.+.      +...    ...+.+.++. ++ ...+..|+|||||++|++++     
T Consensus       377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~------~~~~----~~~~~v~~l~-~~-g~~~~~v~~~pdg~~l~v~~~~~~~  444 (543)
T 1nir_A          377 VHPKYGPVWSTSHLGDGSISLIGTDPK------NHPQ----YAWKKVAELQ-GQ-GGGSLFIKTHPKSSHLYVDTTFNPD  444 (543)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTT------TCTT----TBTSEEEEEE-CS-CSCCCCEECCTTCCEEEECCTTCSS
T ss_pred             CCCCCccEEEeccCCCceEEEEEeCCC------CCch----hcCeEEEEEE-cC-CCCceEEEcCCCCCcEEEecCCCCC
Confidence            5777 7778887644457999999652      1000    0114666665 22 23467899999999999988     


Q ss_pred             --CCCcEEEEeCCCCCC
Q 004255          451 --SKGTCHVFVLSPFGG  465 (765)
Q Consensus       451 --~dgTVhIwdl~~~gg  465 (765)
                        .+++|.|||+.+...
T Consensus       445 ~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          445 ARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             HHHHTCEEEEETTCTTS
T ss_pred             cccCceEEEEECCCCCC
Confidence              278999999998654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.3e-14  Score=166.88  Aligned_cols=232  Identities=11%  Similarity=0.103  Sum_probs=150.3

Q ss_pred             CcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCC-----EEEEEEecCCCCCCCCCCccccC
Q 004255           57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGP-----VSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        57 ~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~-----V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      +.|.-+.|-.       +++.|+++..+| ++|||.+.   +...+. |+.+     |.+++++|+.             
T Consensus        86 ~~V~~vawSP-------dG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG-------------  141 (588)
T 2j04_A           86 CYPRVCKPSP-------IDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIE-------------  141 (588)
T ss_dssp             CCEEEEEECS-------SSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSS-------------
T ss_pred             CcEEEEEECC-------CCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCC-------------
Confidence            4455555533       466788887776 99999643   666677 7664     9999999862             


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-------EEEEEeC-----CCCEEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-------YEHVLRF-----RSSVCMV  198 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~-------~v~tL~~-----~s~V~sV  198 (765)
                      .+||+.+.                                 +++|+|||++++.       .+++++.     .+.|++|
T Consensus       142 ~~LAsgs~---------------------------------DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sV  188 (588)
T 2j04_A          142 SSIVVGNE---------------------------------DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHI  188 (588)
T ss_dssp             SCEEEEET---------------------------------TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEE
T ss_pred             CEEEEEcC---------------------------------CCEEEEEECCCCccccccceeeeeeecccccccccEEEE
Confidence            36776331                                 3699999999986       4777753     2499999


Q ss_pred             EecCCeEEE-EeCCeEEEEECCCCcee---EEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCcccc
Q 004255          199 RCSPRIVAV-GLATQIYCFDALTLENK---FSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLS  273 (765)
Q Consensus       199 ~~s~~~LaV-~~~~~I~iwD~~t~~~l---~tl~-t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s  273 (765)
                      +++|.-|++ +.++.|++||+.+.+..   +++. .|..             ....++|+..+||               
T Consensus       189 awSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~-------------~V~svaFsg~~LA---------------  240 (588)
T 2j04_A          189 VWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRR-------------KITDLKIVDYKVV---------------  240 (588)
T ss_dssp             EEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSS-------------CCCCEEEETTEEE---------------
T ss_pred             EEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccC-------------cEEEEEEECCEEE---------------
Confidence            999843554 55678999999887632   4453 2221             0122333111111               


Q ss_pred             CCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEE
Q 004255          274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVV  353 (765)
Q Consensus       274 ~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~I  353 (765)
                                                                                            .+. +|+|++
T Consensus       241 ----------------------------------------------------------------------Sa~-~~tIkL  249 (588)
T 2j04_A          241 ----------------------------------------------------------------------LTC-PGYVHK  249 (588)
T ss_dssp             ----------------------------------------------------------------------EEC-SSEEEE
T ss_pred             ----------------------------------------------------------------------EEe-CCeEEE
Confidence                                                                                  122 589999


Q ss_pred             EECCCCcEEEEeccCCCCeEEEEE--CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC-------ccccCCcceEEEE
Q 004255          354 KDFVTRAIISQFKAHTSPISALCF--DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH-------KYDWNSSHVHLYK  424 (765)
Q Consensus       354 wDl~s~~~i~~~~aH~~~IsaLaF--SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~-------~~~~~~s~~~l~~  424 (765)
                      ||+.+++......+|...|..++|  +|||+.|++|+.+|+  |||..... ..+..+..       -..|......+..
T Consensus       250 Wd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~d~~-~~spd~~l~a~~d~~v~lW~~~g~~l~~  326 (588)
T 2j04_A          250 IDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLEDEL-HVTADNIIAPYLEKKFKKWSTIWNEFNN  326 (588)
T ss_dssp             EETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEESSSE-EEECCCSSHHHHHHHHHHTTTTTTSSSS
T ss_pred             EECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEeeccE-EECCCceEEEEcCCEEEEEECCCCceee
Confidence            999988874444489999999999  999999999999664  99997321 00001110       0011111111221


Q ss_pred             EecccccccEEEEEEccCCCEEEEEe
Q 004255          425 LHRGITSATIQDICFSHYSQWIAIVS  450 (765)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~Las~S  450 (765)
                      + .+  ...|++++|||||+.||+++
T Consensus       327 ~-~~--~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          327 Y-ET--TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             S-CC--EEEEEEEEECTTSSEEEEEE
T ss_pred             e-cc--ceEEEEEEECCCCCEEEEEE
Confidence            1 11  34599999999999999887

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.61  E-value=1e-13  Score=153.46  Aligned_cols=172  Identities=18%  Similarity=0.155  Sum_probs=121.8

Q ss_pred             CEEEEEECCCCeEEEEE-eCCCCEEEEEecC--CeEEEEe-CC---eEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255          173 TAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGL-AT---QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL-~~~s~V~sV~~s~--~~LaV~~-~~---~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~  245 (765)
                      ++|++||+..++ +..+ .....|.+++++|  +.|+.+. ++   .|++||+.+++.. .+..++.             
T Consensus       159 ~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~-------------  223 (415)
T 2hqs_A          159 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR-------------  223 (415)
T ss_dssp             EEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSS-------------
T ss_pred             ceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCC-------------
Confidence            689999998554 4444 4567999999998  5677654 33   7999999998764 4444432             


Q ss_pred             ccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCC
Q 004255          246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (765)
Q Consensus       246 ~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~  323 (765)
                      ....++++|  ++||+....                                                            
T Consensus       224 ~~~~~~~spdg~~la~~~~~------------------------------------------------------------  243 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSK------------------------------------------------------------  243 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECT------------------------------------------------------------
T ss_pred             cccCEEEcCCCCEEEEEEec------------------------------------------------------------
Confidence            123456666  455544310                                                            


Q ss_pred             CCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCC
Q 004255          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMP  401 (765)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~  401 (765)
                                            +.+..|.+||+.+++. ..+..|...+.+++|+|||++|++++.++.  .|.+||+..
T Consensus       244 ----------------------~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          244 ----------------------TGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             ----------------------TSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             ----------------------CCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence                                  1134699999998876 678889999999999999999999887443  466678743


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC---CcEEEEeCCC
Q 004255          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP  462 (765)
Q Consensus       402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d---gTVhIwdl~~  462 (765)
                             +           .+..+..  +...+.+++|||||++|++++.+   .+|++||+..
T Consensus       301 -------~-----------~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          301 -------G-----------APQRITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             -------S-----------CCEECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             -------C-----------CEEEEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence                   2           1122221  22458899999999999998875   5899999875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.58  E-value=3.7e-13  Score=140.75  Aligned_cols=278  Identities=12%  Similarity=0.075  Sum_probs=154.8

Q ss_pred             eEEEEEecC-cEEEEEccCCCcceEee-eeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           76 QVLLLGYQN-GFQVLDVEDASNFNELV-SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        76 ~vL~~G~~~-G~qVWdv~~~g~~~ell-s~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      .+++.++.+ .+++||++..++...+. -.+.+.+..+++.|+             ..+|+++..+              
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-------------g~~l~~~~~~--------------   58 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-------------KRYLYVGVRP--------------   58 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT-------------SSEEEEEETT--------------
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCC-------------CCEEEEeecC--------------
Confidence            344444544 59999996555443332 234567888888874             2356553321              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECC--CCe--EEEEEeCCCCEEEEEecC--CeEEEEe--CCeEEEEECCCC---c
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHC--YEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTL---E  222 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlk--tg~--~v~tL~~~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~---~  222 (765)
                                        .++|++|++.  +++  .+..+.....+..+++++  +.|+++.  ++.|++||+.++   +
T Consensus        59 ------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~  120 (343)
T 1ri6_A           59 ------------------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG  120 (343)
T ss_dssp             ------------------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred             ------------------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccc
Confidence                              1589999997  665  445666566888899887  5565554  457999999433   3


Q ss_pred             eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEec-CCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255          223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS-NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM  299 (765)
Q Consensus       223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas-~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~  299 (765)
                      ....+.....              ...++++|  ++|+.+. .+..+     ..|+..+           .+.+....  
T Consensus       121 ~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~~~~v-----~~~d~~~-----------~~~~~~~~--  168 (343)
T 1ri6_A          121 VVDVVEGLDG--------------CHSANISPDNRTLWVPALKQDRI-----CLFTVSD-----------DGHLVAQD--  168 (343)
T ss_dssp             EEEEECCCTT--------------BCCCEECTTSSEEEEEEGGGTEE-----EEEEECT-----------TSCEEEEE--
T ss_pred             ccccccCCCC--------------ceEEEECCCCCEEEEecCCCCEE-----EEEEecC-----------CCceeeec--
Confidence            3333322221              23467887  5666554 21100     0111100           00000000  


Q ss_pred             hhhhhhhcccceeecccccccCCCC-CCCCccCCCccccccccccccCCCCeEEEEECCC--CcE--EEEec---c-C--
Q 004255          300 EHSKQFAAGLSKTLSKYCQELLPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAI--ISQFK---A-H--  368 (765)
Q Consensus       300 d~~k~la~G~~ktls~~~~~~~p~~-s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s--~~~--i~~~~---a-H--  368 (765)
                             .   ..+      ..+.+ ....+.++++++...   .....++.|.+||+..  ++.  ...+.   . |  
T Consensus       169 -------~---~~~------~~~~~~~~~~~~~~pdg~~l~---~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (343)
T 1ri6_A          169 -------P---AEV------TTVEGAGPRHMVFHPNEQYAY---CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD  229 (343)
T ss_dssp             -------E---EEE------ECSTTCCEEEEEECTTSSEEE---EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred             -------c---ccc------ccCCCCCcceEEECCCCCEEE---EEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence                   0   000      00000 111122333333211   2334688999999953  332  22222   1 1  


Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255          369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI  448 (765)
Q Consensus       369 ~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las  448 (765)
                      ...+.+++|+|+|++|+.+...+..|++||+...     .+        ....+..+..+   ..+.+++|+|||++|++
T Consensus       230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-----~~--------~~~~~~~~~~~---~~~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          230 TRWAADIHITPDGRHLYACDRTASLITVFSVSED-----GS--------VLSKEGFQPTE---TQPRGFNVDHSGKYLIA  293 (343)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----SC--------CEEEEEEEECS---SSCCCEEECTTSSEEEE
T ss_pred             cCCccceEECCCCCEEEEEecCCCEEEEEEEcCC-----CC--------ceEEeeeecCC---CccceEEECCCCCEEEE
Confidence            2356789999999988866644567999998631     01        11233344322   23788999999999988


Q ss_pred             Ee-CCCcEEEEeCCCCCC
Q 004255          449 VS-SKGTCHVFVLSPFGG  465 (765)
Q Consensus       449 ~S-~dgTVhIwdl~~~gg  465 (765)
                      ++ .++++.||+++...+
T Consensus       294 ~~~~~~~v~v~~~d~~~g  311 (343)
T 1ri6_A          294 AGQKSHHISVYEIVGEQG  311 (343)
T ss_dssp             ECTTTCEEEEEEEETTTT
T ss_pred             ecCCCCeEEEEEEcCCCc
Confidence            88 689999998876554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.56  E-value=9.7e-13  Score=151.54  Aligned_cols=282  Identities=10%  Similarity=0.056  Sum_probs=169.6

Q ss_pred             CCeEEEEEecC-cEEEEEcc-CCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255           74 FKQVLLLGYQN-GFQVLDVE-DASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (765)
Q Consensus        74 ~~~vL~~G~~~-G~qVWdv~-~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~  151 (765)
                      +++.|+++..+ .+.+||+. .++++...+.. ...++.+++.|.+-       |  ...+|++...             
T Consensus       189 dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~-------~--dg~~l~v~~~-------------  245 (543)
T 1nir_A          189 SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKG-------Y--EDRYTIAGAY-------------  245 (543)
T ss_dssp             TSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTT-------C--TTTEEEEEEE-------------
T ss_pred             CCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcC-------C--CCCEEEEEEc-------------
Confidence            35556655554 59999993 23555555553 34578899887110       0  1236655221             


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC------------CCEEEEEecC--CeEEEEe--CCeEEE
Q 004255          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR------------SSVCMVRCSP--RIVAVGL--ATQIYC  215 (765)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~------------s~V~sV~~s~--~~LaV~~--~~~I~i  215 (765)
                                         .+++|.+||..+++++.++..+            ..+.+|.+++  +.++++.  +++|.+
T Consensus       246 -------------------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v  306 (543)
T 1nir_A          246 -------------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  306 (543)
T ss_dssp             -------------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             -------------------cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEE
Confidence                               1368999999999999998752            2688999986  4444443  458999


Q ss_pred             EECCCCceeE--EEEecCCcccCCCCccccccccceeEEcc--ceEEEecC--CceecCCccccCCCCCCCCCCCCcCCC
Q 004255          216 FDALTLENKF--SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPG  289 (765)
Q Consensus       216 wD~~t~~~l~--tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~--~~~~~~~G~~s~~~lt~~~~s~s~sp~  289 (765)
                      ||..+++.+.  ++.....              ...++|+|  ++|..+..  +.+      ..|+..+           
T Consensus       307 vd~~~~~~l~~~~i~~~~~--------------~~~~~~spdg~~l~va~~~~~~v------~v~D~~t-----------  355 (543)
T 1nir_A          307 VNYKDIDNLTVTSIGAAPF--------------LHDGGWDSSHRYFMTAANNSNKV------AVIDSKD-----------  355 (543)
T ss_dssp             EECTTSSSCEEEEEECCSS--------------CCCEEECTTSCEEEEEEGGGTEE------EEEETTT-----------
T ss_pred             EEecCCCcceeEEeccCcC--------------ccCceECCCCCEEEEEecCCCeE------EEEECCC-----------
Confidence            9999887655  3322111              13478888  66544322  111      1122111           


Q ss_pred             CCcceeeehhhhhhhhhcccceeecccccccCC-CCCCCCccCCCcccccccccccc-CCCCeEEEEECCC-------Cc
Q 004255          290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP-DGSSSPVSPNSVWKVGRHAGADM-DNAGIVVVKDFVT-------RA  360 (765)
Q Consensus       290 ~gslva~~a~d~~k~la~G~~ktls~~~~~~~p-~~s~~~~s~s~~~~~~~~~~~~~-~~dG~V~IwDl~s-------~~  360 (765)
                       +.+++                ++.-.   ..| .+....+ ..+++..   ..+++ ..+++|.|||+.+       .+
T Consensus       356 -g~l~~----------------~i~~g---~~ph~g~g~~~-~~p~~g~---~~~s~~~~d~~V~v~d~~~~~~~~~~~~  411 (543)
T 1nir_A          356 -RRLSA----------------LVDVG---KTPHPGRGANF-VHPKYGP---VWSTSHLGDGSISLIGTDPKNHPQYAWK  411 (543)
T ss_dssp             -TEEEE----------------EEECS---SSBCCTTCEEE-EETTTEE---EEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred             -CeEEE----------------eeccC---CCCCCCCCccc-CCCCCcc---EEEeccCCCceEEEEEeCCCCCchhcCe
Confidence             11111                11000   000 0000000 0111111   11223 2578999999998       89


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEEc---C---CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-c------
Q 004255          361 IISQFKAHTSPISALCFDPSGTLLVTASV---Y---GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-R------  427 (765)
Q Consensus       361 ~i~~~~aH~~~IsaLaFSpdG~lLATaS~---d---Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~-r------  427 (765)
                      ++.++.+|...+..++|+|||++|++++.   |   +..|.|||+.+.                 ..+++.. -      
T Consensus       412 ~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~-----------------~~~~~~~~v~~~~~~  474 (543)
T 1nir_A          412 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL-----------------DAKYQVLPIAEWADL  474 (543)
T ss_dssp             EEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT-----------------TSCCEEECHHHHHCC
T ss_pred             EEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC-----------------CCCeEEeechhhccc
Confidence            99999999999999999999999999872   1   335999999762                 1222221 0      


Q ss_pred             ccccccEEEEEEccCCCEEEEEe-----CCCcEEEEeCCCCCCCccc
Q 004255          428 GITSATIQDICFSHYSQWIAIVS-----SKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S-----~dgTVhIwdl~~~gg~~~~  469 (765)
                      +.....+..+.|+|||++|.++.     .+++|.|||..+......+
T Consensus       475 ~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i  521 (543)
T 1nir_A          475 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV  521 (543)
T ss_dssp             CSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred             CCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEee
Confidence            11134689999999999998773     4799999999886544333

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.55  E-value=9.6e-12  Score=131.00  Aligned_cols=172  Identities=12%  Similarity=0.083  Sum_probs=122.3

Q ss_pred             CEEEEEECCCCeEEEEEeCCC----------CEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCC
Q 004255          173 TAVRFYSFQSHCYEHVLRFRS----------SVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAG  237 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s----------~V~sV~~s~--~~LaV~~---~~~I~iwD~~t~~~l~tl~t~p~p~~~~  237 (765)
                      ++|.+||+++++.+..+..+.          .+..+.+++  +.|+++.   ++.|++||+.+++....+.....     
T Consensus       111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----  185 (353)
T 3vgz_A          111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK-----  185 (353)
T ss_dssp             TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT-----
T ss_pred             CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC-----
Confidence            589999999999999998743          268888876  5666654   45799999999987766542111     


Q ss_pred             CCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecc
Q 004255          238 QGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK  315 (765)
Q Consensus       238 ~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~  315 (765)
                              ....++++|  ++|+                                                         
T Consensus       186 --------~~~~~~~s~dg~~l~---------------------------------------------------------  200 (353)
T 3vgz_A          186 --------MSTGLALDSEGKRLY---------------------------------------------------------  200 (353)
T ss_dssp             --------TCCCCEEETTTTEEE---------------------------------------------------------
T ss_pred             --------ccceEEECCCCCEEE---------------------------------------------------------
Confidence                    001233322  1111                                                         


Q ss_pred             cccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc----CCCCeEEEEECCCCCEEEEEEcCC
Q 004255          316 YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----HTSPISALCFDPSGTLLVTASVYG  391 (765)
Q Consensus       316 ~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a----H~~~IsaLaFSpdG~lLATaS~dG  391 (765)
                                                  .+..++.|.+||+.+++.+..+..    +...+..++|+|+|++|+.++.++
T Consensus       201 ----------------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  252 (353)
T 3vgz_A          201 ----------------------------TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA  252 (353)
T ss_dssp             ----------------------------EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred             ----------------------------EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC
Confidence                                        112367899999999998887764    566788999999999988888766


Q ss_pred             CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC
Q 004255          392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF  463 (765)
Q Consensus       392 t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~  463 (765)
                      ..|.+||+..       +          ..+..+.-+.    -.+++|+|||++|++++ .+++|++||+...
T Consensus       253 ~~v~~~d~~~-------~----------~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          253 AEVLVVDTRN-------G----------NILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             SEEEEEETTT-------C----------CEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             CEEEEEECCC-------C----------cEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            7899999854       3          3444444332    24699999999776666 6899999998753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.53  E-value=4.3e-13  Score=136.07  Aligned_cols=218  Identities=9%  Similarity=0.025  Sum_probs=139.6

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYG  248 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t-~~~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (765)
                      +++|++||+.+++....+.+...|.++++++  ++|+++.++.|++||+.+ ++.......+...            ...
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------~~~   88 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI------------CNN   88 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCC------------BCS
T ss_pred             ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccc------------ccc
Confidence            5799999999999887777888999999997  688888888999999998 7654433222110            124


Q ss_pred             eeEEcc--ceEEEecCC----ceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255          249 PMAVGP--RWLAYASNT----LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (765)
Q Consensus       249 ~~Alsp--r~LAyas~~----~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p  322 (765)
                      .++++|  ++|+++...    ..+.     .++..                             .+..+.+..       
T Consensus        89 ~~~~spdg~~l~~~~~~~~~~~~l~-----~~~~~-----------------------------~~~~~~~~~-------  127 (297)
T 2ojh_A           89 DHGISPDGALYAISDKVEFGKSAIY-----LLPST-----------------------------GGTPRLMTK-------  127 (297)
T ss_dssp             CCEECTTSSEEEEEECTTTSSCEEE-----EEETT-----------------------------CCCCEECCS-------
T ss_pred             ceEECCCCCEEEEEEeCCCCcceEE-----EEECC-----------------------------CCceEEeec-------
Confidence            578888  788887632    1110     00000                             000000000       


Q ss_pred             CCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s-~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~  401 (765)
                      ........++++++...   ..+..++.++||++.. ......+..|...+.+++|+|+|++|+.++..+..++||++..
T Consensus       128 ~~~~~~~~~spdg~~l~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~  204 (297)
T 2ojh_A          128 NLPSYWHGWSPDGKSFT---YCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV  204 (297)
T ss_dssp             SSSEEEEEECTTSSEEE---EEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CCCccceEECCCCCEEE---EEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence            00001112223332211   1344678889998532 2345677788899999999999999888775344589999853


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-----------CcEEEEeCCCC
Q 004255          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-----------GTCHVFVLSPF  463 (765)
Q Consensus       402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d-----------gTVhIwdl~~~  463 (765)
                      .      +          ..+..+..  +...+.+++|+|||++|++++.+           +.+.+||+...
T Consensus       205 ~------~----------~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          205 D------G----------SSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             T------S----------SCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             C------C----------CCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence            1      1          13334432  22468899999999999999876           56999998753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.51  E-value=1.1e-11  Score=130.10  Aligned_cols=88  Identities=10%  Similarity=0.052  Sum_probs=65.7

Q ss_pred             EEECCCCcE-EEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 004255          353 VKDFVTRAI-ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT  430 (765)
Q Consensus       353 IwDl~s~~~-i~~~~aH~~~IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~  430 (765)
                      .+|+.+++. +..+..+...+..++|+| ||++|+++  ++ .|.+||+..       +          ..+..+..+  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~-~v~~~d~~~-------~----------~~~~~~~~~--  294 (349)
T 1jmx_B          237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN-RLAKYDLKQ-------R----------KLIKAANLD--  294 (349)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES-EEEEEETTT-------T----------EEEEEEECS--
T ss_pred             EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC-eEEEEECcc-------C----------eEEEEEcCC--
Confidence            367766653 223345667889999999 99999988  34 699999864       3          344444433  


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       431 ~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                       ..+.+++|+|||++|++++.+++|++||+...
T Consensus       295 -~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          295 -HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             -SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             -CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence             23678999999999999999999999999764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.49  E-value=5.9e-13  Score=156.38  Aligned_cols=282  Identities=9%  Similarity=-0.020  Sum_probs=164.5

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEec-Cc------EEEEEccCCCcceEeeeeccCC---------------------
Q 004255           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NG------FQVLDVEDASNFNELVSKRDGP---------------------  107 (765)
Q Consensus        56 ~~~v~w~~fd~l~~~~~~~~~vL~~G~~-~G------~qVWdv~~~g~~~ells~~dg~---------------------  107 (765)
                      .+.+..+.|..       +++.|+.+.. +|      +.+||++ .++...++..+...                     
T Consensus        36 ~~~~~~~~~Sp-------dG~~la~~~~~d~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (741)
T 2ecf_A           36 GPTLMKPKVAP-------DGSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAA  107 (741)
T ss_dssp             CCCCEEEEECT-------TSSEEEEEECCSSCTTEEEEEEEETT-TCCEEEEECGGGTC--------------------C
T ss_pred             CCCCCCceEec-------CCCEEEEEeccCCCCcccEEEEEECC-CCceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence            44566677744       3556666554 43      9999995 57777777655432                     


Q ss_pred             ---EEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC-
Q 004255          108 ---VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-  183 (765)
Q Consensus       108 ---V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg-  183 (765)
                         |..++++|+             ...|+++.                                  .++|.+||+.++ 
T Consensus       108 ~~~v~~~~~SpD-------------g~~l~~~~----------------------------------~~~i~~~d~~~~~  140 (741)
T 2ecf_A          108 MTGIVDYQWSPD-------------AQRLLFPL----------------------------------GGELYLYDLKQEG  140 (741)
T ss_dssp             CEESCCCEECTT-------------SSEEEEEE----------------------------------TTEEEEEESSSCS
T ss_pred             ccCcceeEECCC-------------CCEEEEEe----------------------------------CCcEEEEECCCCC
Confidence               566666664             23565532                                  148999999988 


Q ss_pred             --eEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcc-----ccccccceeEEcc
Q 004255          184 --CYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAV-----GINVGYGPMAVGP  254 (765)
Q Consensus       184 --~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~-----~~~~~~~~~Alsp  254 (765)
                        +..........+..++++|  +.||.+.+++|++||+.+++.............  .+..     ........++++|
T Consensus       141 ~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~--~g~~~~v~~~~~~~~~~~~~Sp  218 (741)
T 2ecf_A          141 KAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIG--NGIAEFVADEEMDRHTGYWWAP  218 (741)
T ss_dssp             TTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEE--ESCCCHHHHHHSCCCCSEEECT
T ss_pred             cceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCcccee--ccccceeeeeccccccceEECC
Confidence              5443333446899999998  688888888999999998865432221111000  0000     0000024578888


Q ss_pred             --ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCC
Q 004255          255 --RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN  332 (765)
Q Consensus       255 --r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s  332 (765)
                        ++||++..+.-    ....+.  ..     ...|...                    ....+   .++..        
T Consensus       219 Dg~~l~~~~~d~~----~~~~~~--~~-----~~~p~~~--------------------~~~~~---~~~~~--------  256 (741)
T 2ecf_A          219 DDSAIAYARIDES----PVPVQK--RY-----EVYADRT--------------------DVIEQ---RYPAA--------  256 (741)
T ss_dssp             TSSCEEEEEEECT----TSCEEE--EE-----EECSSCE--------------------EEEEE---ECCBT--------
T ss_pred             CCCEEEEEEEcCC----CCceEe--cC-----CCCCCcc--------------------cceEe---ecCCC--------
Confidence              88888753210    000000  00     0000000                    00000   00000        


Q ss_pred             CccccccccccccCCCCeEEEEECCC-CcEEEEec--cCCCCeEEEEECCCCCEEEEEEc----CCCEEEEEeCCCCccc
Q 004255          333 SVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFK--AHTSPISALCFDPSGTLLVTASV----YGNNINIFRIMPSCMR  405 (765)
Q Consensus       333 ~~~~~~~~~~~~~~~dG~V~IwDl~s-~~~i~~~~--aH~~~IsaLaFSpdG~lLATaS~----dGt~IrVWdi~~~~~~  405 (765)
                                ......-.|.+||+.+ ++......  .|...+..++| |||++|+.++.    ++..|++||+..    
T Consensus       257 ----------g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~----  321 (741)
T 2ecf_A          257 ----------GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS----  321 (741)
T ss_dssp             ----------TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT----
T ss_pred             ----------CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC----
Confidence                      0001123688889988 87655443  48889999999 99999998764    234689999854    


Q ss_pred             CCCCCCccccCCcceEEEEEecccccc---cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          406 SGSGNHKYDWNSSHVHLYKLHRGITSA---TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       406 ~~sG~~~~~~~~s~~~l~~l~rG~~~a---~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                         |          .....+. +....   .+.+++|||||++|++++.||+++||.++..++
T Consensus       322 ---g----------~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~  370 (741)
T 2ecf_A          322 ---N----------QQRVLAH-ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK  370 (741)
T ss_dssp             ---C----------CEEEEEE-EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred             ---C----------ceEEEEE-cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence               3          1222222 21211   346799999999999999999999999875544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.49  E-value=1.3e-11  Score=130.93  Aligned_cols=105  Identities=11%  Similarity=0.211  Sum_probs=69.5

Q ss_pred             CCeEEEEECCC--CcE--EEEeccCC------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255          348 AGIVVVKDFVT--RAI--ISQFKAHT------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (765)
Q Consensus       348 dG~V~IwDl~s--~~~--i~~~~aH~------~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~  417 (765)
                      ++.|.+||+..  ++.  +..+..+.      ..+..++|+|||++|+.++..+..|.|||+...      |        
T Consensus       208 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~------g--------  273 (347)
T 3hfq_A          208 SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD------G--------  273 (347)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG------G--------
T ss_pred             CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC------C--------
Confidence            45777777663  432  23333322      348899999999988655554567999998531      1        


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeCC-CcEEEEeCCCCCCCcc
Q 004255          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGGDSG  468 (765)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d-gTVhIwdl~~~gg~~~  468 (765)
                      ....+..+..+  ...+.+++|+|||++|++++.+ ++|.||+++...+...
T Consensus       274 ~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          274 HLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             CEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             cEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            11334444321  2347899999999999888765 8999999887666543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.47  E-value=1.7e-12  Score=151.78  Aligned_cols=220  Identities=13%  Similarity=0.088  Sum_probs=134.1

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCC-----CceeEEEEecCCccc-----CCCCc
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALT-----LENKFSVLTYPVPQL-----AGQGA  240 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t-----~~~l~tl~t~p~p~~-----~~~~~  240 (765)
                      ++|++||+.+++..........+.+++++|  +.||.+.++.|++||+.+     ++.............     .++..
T Consensus       101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~  180 (706)
T 2z3z_A          101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF  180 (706)
T ss_dssp             TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT
T ss_pred             CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc
Confidence            489999999998877766777888889987  688888888999999998     765432221111000     00000


Q ss_pred             cccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeeccccc
Q 004255          241 VGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ  318 (765)
Q Consensus       241 ~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~  318 (765)
                      .    ....++++|  ++||++..+.    .+...+.....   .    .. ...+                .. .+|  
T Consensus       181 ~----~~~~~~~SpDg~~la~~~~d~----~~~~~~~~~~~---~----~~-~~~~----------------~~-~~y--  225 (706)
T 2z3z_A          181 G----IEKGTFWSPKGSCLAFYRMDQ----SMVKPTPIVDY---H----PL-EAES----------------KP-LYY--  225 (706)
T ss_dssp             T----CCCSEEECTTSSEEEEEEEEC----TTSCCEEEEEC---C----SS-SCEE----------------EE-ECC--
T ss_pred             C----CCceEEECCCCCEEEEEEECC----CCCceEEeecc---C----CC-CCce----------------EE-eeC--
Confidence            0    024578888  8898876321    00000000000   0    00 0000                00 000  


Q ss_pred             ccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCC----C
Q 004255          319 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYG----N  392 (765)
Q Consensus       319 ~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~--aH~~~IsaLaFSpdG~lLATaS~dG----t  392 (765)
                         |.                  ......++.|.+||+.+++......  .|...+.+++|+|||++|++++.++    .
T Consensus       226 ---~~------------------~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  284 (706)
T 2z3z_A          226 ---PM------------------AGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNEC  284 (706)
T ss_dssp             ---CB------------------TTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred             ---CC------------------CCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence               00                  0012245689999999988655442  5778899999999999999988754    2


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc---cEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA---TIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a---~I~slaFSp--Dg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      .|++||+.+       |          ..+..+.......   .+.+++|||  ||++|++++.|++++||.++..++
T Consensus       285 ~v~~~d~~~-------g----------~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~  345 (706)
T 2z3z_A          285 KVNAYDAET-------G----------RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR  345 (706)
T ss_dssp             EEEEEETTT-------C----------CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred             EEEEEECCC-------C----------ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence            699999854       2          1222222111111   246789999  999999999999999999874444

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.46  E-value=1.1e-12  Score=153.40  Aligned_cols=279  Identities=13%  Similarity=0.025  Sum_probs=160.9

Q ss_pred             CCeEEEEEecCcEEEEEccCCCcceEeeeeccC---CEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCc
Q 004255           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR  150 (765)
Q Consensus        74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg---~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~  150 (765)
                      ++++|+.+.++.+++||++ ++++..++..+..   .|..++++|+.             ..||++..+..         
T Consensus        27 dg~~~~~~~dg~i~~~d~~-~g~~~~~~~~~~~~~~~v~~~~~SpDg-------------~~l~~~~~~~~---------   83 (723)
T 1xfd_A           27 DTEFIYREQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDR-------------EYALFSYNVEP---------   83 (723)
T ss_dssp             SSCBCCCCSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTS-------------SEEEEEESCCC---------
T ss_pred             CCcEEEEeCCCCEEEEECC-CCcEEEEeccccccccccceEEECCCC-------------CEEEEEecCcc---------
Confidence            3455655444569999995 5777788877665   48999999862             26666443221         


Q ss_pred             CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC----CCEEEEEecC--CeEEEEeCCeEEEEECCCCcee
Q 004255          151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR----SSVCMVRCSP--RIVAVGLATQIYCFDALTLENK  224 (765)
Q Consensus       151 ~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~----s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l  224 (765)
                               .+.      ....+.|.+||+.+++. ..+...    ..|..++++|  +.||.+..++|++||+.+++..
T Consensus        84 ---------~~~------~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~  147 (723)
T 1xfd_A           84 ---------IYQ------HSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI  147 (723)
T ss_dssp             ---------CSS------SCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred             ---------cee------ecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceE
Confidence                     000      01247899999999986 344322    2378889987  6888888889999999998765


Q ss_pred             EEEEecCCcccCCCCccc------cccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceee
Q 004255          225 FSVLTYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVAR  296 (765)
Q Consensus       225 ~tl~t~p~p~~~~~~~~~------~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~  296 (765)
                      .....+.... +-.+.+.      +......++++|  ++|||+..+.-    ....++....                 
T Consensus       148 ~~~~~~~~~~-~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~----~~~~~~~~~~-----------------  205 (723)
T 1xfd_A          148 RVVSTGKEGV-IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS----RVPIMELPTY-----------------  205 (723)
T ss_dssp             EEECCCBTTT-EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT----TSCEEEECCC-----------------
T ss_pred             EEecCCCCCc-eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC----ccceEEeecc-----------------
Confidence            5443322110 0000000      000124588998  88999764310    0000000000                 


Q ss_pred             ehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC------CC
Q 004255          297 YAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH------TS  370 (765)
Q Consensus       297 ~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH------~~  370 (765)
                                          .....+.  .....+...+        ....+..|.+||+.+++....+..|      ..
T Consensus       206 --------------------~~~~~~~--~~~~~~~~~G--------~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          206 --------------------TGSIYPT--VKPYHYPKAG--------SENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             --------------------SSSSSCC--CEEEECCBTT--------SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             --------------------CCcCCCc--ceeccCCCCC--------CCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence                                0000000  0000000000        0122458999999998866677665      67


Q ss_pred             CeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE----EEEEEccCC
Q 004255          371 PISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI----QDICFSHYS  443 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dG---t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I----~slaFSpDg  443 (765)
                      .+..++|||||++|++.+..+   ..|++||+..       |          .....+. +.+...+    .+++|||||
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-------g----------~~~~~~~-~~~~~~~~~~~~~~~~spdg  317 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-------G----------VCTKKHE-DESEAWLHRQNEEPVFSKDG  317 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-------C----------CEEEEEE-EECSSCCCCCCCCCEECTTS
T ss_pred             eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-------C----------cceEEEE-eccCCEEeccCCCceEcCCC
Confidence            899999999999998876532   4689999854       3          1222221 1122223    378999999


Q ss_pred             CEEEE--EeCCC----cEEEEeCC
Q 004255          444 QWIAI--VSSKG----TCHVFVLS  461 (765)
Q Consensus       444 ~~Las--~S~dg----TVhIwdl~  461 (765)
                      ++|+.  +..++    +.+||.++
T Consensus       318 ~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          318 RKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CeEEEEEecccCCCcceeEEEEEe
Confidence            98875  44667    66666555

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.44  E-value=2.8e-11  Score=129.41  Aligned_cols=106  Identities=11%  Similarity=0.252  Sum_probs=74.6

Q ss_pred             CCCeEEEEECCCCcE--EEEe---ccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255          347 NAGIVVVKDFVTRAI--ISQF---KAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~--i~~~---~aH~~~IsaLaFSpdG~lLATaS~d-Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~  420 (765)
                      .++.|.+||+.+++.  +..+   ..|......++|+|||++|+.+..+ +..|+||++.+.     .|        ...
T Consensus       231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-----~g--------~~~  297 (361)
T 3scy_A          231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-----NG--------TLT  297 (361)
T ss_dssp             TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-----TC--------CEE
T ss_pred             CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-----CC--------cEE
Confidence            357899999887653  3333   3344557899999999999887775 567999998531     02        112


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCcc
Q 004255          421 HLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDSG  468 (765)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg~~~  468 (765)
                      .+..+..|   ..+.+++|||||++|++++ .+++|.||+++...+...
T Consensus       298 ~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~  343 (361)
T 3scy_A          298 KVGYQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT  343 (361)
T ss_dssp             EEEEEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EeeEecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence            33344322   3477899999999999888 679999999887665543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.42  E-value=1.3e-10  Score=122.27  Aligned_cols=218  Identities=7%  Similarity=-0.009  Sum_probs=143.5

Q ss_pred             eEEEEEecC-cEEEEEccCCCcceEeeeeccCC---------EEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCC
Q 004255           76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDGP---------VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLA  145 (765)
Q Consensus        76 ~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~---------V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~  145 (765)
                      .+++++..+ .+.+||.+ .+++...+..+.+.         +..+.+.|+.             ..|++...+      
T Consensus       102 ~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------------~~l~~~~~~------  161 (353)
T 3vgz_A          102 TLWFGNTVNSAVTAIDAK-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-------------NTVYISGIG------  161 (353)
T ss_dssp             EEEEEETTTTEEEEEETT-TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-------------TEEEEEEES------
T ss_pred             EEEEEecCCCEEEEEeCC-CCeeEEEEecCCCccccccCCCCCceEEECCCC-------------CEEEEEecC------
Confidence            466666654 49999995 56666666554432         6778888641             244443211      


Q ss_pred             CCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEEEe-CCeEEEEECCCC
Q 004255          146 PGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTL  221 (765)
Q Consensus       146 ~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~  221 (765)
                                               .+++|.+||+++++.+..+.. ...+..+.+++  +.|+++. ++.|++||+.++
T Consensus       162 -------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~  216 (353)
T 3vgz_A          162 -------------------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN  216 (353)
T ss_dssp             -------------------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred             -------------------------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence                                     135899999999999999984 44577788876  6666654 468999999999


Q ss_pred             ceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255          222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM  299 (765)
Q Consensus       222 ~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~  299 (765)
                      +....+......         .......++++|  ++|..                                        
T Consensus       217 ~~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~~----------------------------------------  247 (353)
T 3vgz_A          217 KILSRKKLLDDG---------KEHFFINISLDTARQRAFI----------------------------------------  247 (353)
T ss_dssp             EEEEEEECCCSS---------SCCCEEEEEEETTTTEEEE----------------------------------------
T ss_pred             eEEEEEEcCCCC---------CCcccceEEECCCCCEEEE----------------------------------------
Confidence            877776542110         000011133322  11111                                        


Q ss_pred             hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC
Q 004255          300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP  379 (765)
Q Consensus       300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp  379 (765)
                                                                  ....++.|.+||+.+++.+..+..+. + ..++|+|
T Consensus       248 --------------------------------------------~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~s~  281 (353)
T 3vgz_A          248 --------------------------------------------TDSKAAEVLVVDTRNGNILAKVAAPE-S-LAVLFNP  281 (353)
T ss_dssp             --------------------------------------------EESSSSEEEEEETTTCCEEEEEECSS-C-CCEEEET
T ss_pred             --------------------------------------------EeCCCCEEEEEECCCCcEEEEEEcCC-C-ceEEECC
Confidence                                                        11235789999999999888887654 2 5699999


Q ss_pred             CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 004255          380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG  453 (765)
Q Consensus       380 dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg  453 (765)
                      +|++|+.++..+..|.+||+.+       +          ..+..+..+   ..+.+++|+|||++|+++..++
T Consensus       282 dg~~l~v~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          282 ARNEAYVTHRQAGKVSVIDAKS-------Y----------KVVKTFDTP---THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             TTTEEEEEETTTTEEEEEETTT-------T----------EEEEEEECC---SEEEEEEECTTSCEEEEEEECC
T ss_pred             CCCEEEEEECCCCeEEEEECCC-------C----------eEEEEEecC---CCCCeEEEcCCCCEEEEEEccc
Confidence            9997777775566799999854       3          344445432   3579999999999888877664

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.40  E-value=1.5e-11  Score=124.58  Aligned_cols=222  Identities=12%  Similarity=0.056  Sum_probs=140.6

Q ss_pred             CCeEEEEEecCcEEEEEccCCCcceEeeeecc-CCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~d-g~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      +++.|+++.++.+.+||++..++...+...+. ..|..+++.|+             ..+|+++..+..           
T Consensus        52 dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd-------------g~~l~~~~~~~~-----------  107 (297)
T 2ojh_A           52 DGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD-------------GALYAISDKVEF-----------  107 (297)
T ss_dssp             TSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT-------------SSEEEEEECTTT-----------
T ss_pred             CCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCC-------------CCEEEEEEeCCC-----------
Confidence            46788888888899999954266666665553 67888888874             236665432110           


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEE-EE-eCCeEEEEE--CCCCceeEE
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVA-VG-LATQIYCFD--ALTLENKFS  226 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~La-V~-~~~~I~iwD--~~t~~~l~t  226 (765)
                                        ....|.+|++.+++ ...+.....+..+++++  +.|+ ++ .++.++||+  +.+++. ..
T Consensus       108 ------------------~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~  167 (297)
T 2ojh_A          108 ------------------GKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR  167 (297)
T ss_dssp             ------------------SSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE
T ss_pred             ------------------CcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE
Confidence                              02467777777766 45555556788899987  5555 33 456677777  444432 22


Q ss_pred             EEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhh
Q 004255          227 VLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ  304 (765)
Q Consensus       227 l~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~  304 (765)
                      +..+..             ....++++|  ++|+++.                                           
T Consensus       168 ~~~~~~-------------~~~~~~~s~dg~~l~~~~-------------------------------------------  191 (297)
T 2ojh_A          168 LTHGEG-------------RNDGPDYSPDGRWIYFNS-------------------------------------------  191 (297)
T ss_dssp             CCCSSS-------------CEEEEEECTTSSEEEEEE-------------------------------------------
T ss_pred             cccCCC-------------ccccceECCCCCEEEEEe-------------------------------------------
Confidence            222211             012334433  2222221                                           


Q ss_pred             hhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCE
Q 004255          305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTL  383 (765)
Q Consensus       305 la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~-s~~~i~~~~aH~~~IsaLaFSpdG~l  383 (765)
                                                               ..++.++||++. .+..+..+..|...+.+++|+|+|++
T Consensus       192 -----------------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  230 (297)
T 2ojh_A          192 -----------------------------------------SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDK  230 (297)
T ss_dssp             -----------------------------------------CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSE
T ss_pred             -----------------------------------------cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCE
Confidence                                                     124566777765 45566778888889999999999999


Q ss_pred             EEEEEcCC----------CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 004255          384 LVTASVYG----------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG  453 (765)
Q Consensus       384 LATaS~dG----------t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dg  453 (765)
                      |++++.++          ..|.+||+..       +        ....+..+..  +...|.+++|+|||++|++++.+.
T Consensus       231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~-------~--------~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          231 VVFVSYDADVFDHPRDLDVRVQLMDMDG-------G--------NVETLFDLFG--GQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEETTCCSCCSSEEEEEEEEETTS-------C--------SCEEEEEEEE--STTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEEEcCCCCCcccccCceEEEEEecCC-------C--------CceeeeccCC--CCcccccceECCCCCEEEEEEecc
Confidence            99988753          4599999854       2        1134444432  234588899999999999888764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.39  E-value=1.8e-11  Score=143.82  Aligned_cols=99  Identities=13%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             CCCeEEEEECCCCcEEEEeccCCC----CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTS----PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~----~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      .++.|.+||+.+++....+..|..    .+..++|+|||++|++++.+|. ++||.+...      +          . +
T Consensus       310 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~------~----------~-~  371 (741)
T 2ecf_A          310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGF-QHLYRIDSK------G----------K-A  371 (741)
T ss_dssp             SEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSS-CEEEEECSS------S----------C-E
T ss_pred             CeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCc-cEEEEEcCC------C----------C-e
Confidence            456899999999998877776654    4568999999999999888665 788876421      2          2 3


Q ss_pred             EEEecccccccEEEE-EEccCCCEEEEEe-CCC--cEEEEeCCCCCC
Q 004255          423 YKLHRGITSATIQDI-CFSHYSQWIAIVS-SKG--TCHVFVLSPFGG  465 (765)
Q Consensus       423 ~~l~rG~~~a~I~sl-aFSpDg~~Las~S-~dg--TVhIwdl~~~gg  465 (765)
                      ..+..+  ...|.++ +|||||++|+..+ .++  +++||+++..++
T Consensus       372 ~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~  416 (741)
T 2ecf_A          372 AALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG  416 (741)
T ss_dssp             EESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred             eeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence            344332  2457777 5999999886554 455  899999976444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.39  E-value=1.8e-10  Score=120.83  Aligned_cols=180  Identities=10%  Similarity=0.119  Sum_probs=119.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCC-CEEEEEecC--CeEEEEe--CCeEEEEECCCCce-eEEEEecCCcccCCCCccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAVGL--ATQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVG  246 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~-l~tl~t~p~p~~~~~~~~~~~~~  246 (765)
                      ++|++||+.+++.+..+.+.. .+ .+++++  +.|+++.  +++|++||+.+++. ...+..+..|             
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-------------   85 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS-------------   85 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC-------------
T ss_pred             CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC-------------
Confidence            689999999999999988754 55 899987  5555543  45899999999887 5555443332             


Q ss_pred             cceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCC
Q 004255          247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG  324 (765)
Q Consensus       247 ~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~  324 (765)
                      ...++++|  ++|+ ...                                                              
T Consensus        86 ~~~~~~s~dg~~l~-~~~--------------------------------------------------------------  102 (331)
T 3u4y_A           86 MADVDITPDDQFAV-TVT--------------------------------------------------------------  102 (331)
T ss_dssp             CCCEEECTTSSEEE-ECC--------------------------------------------------------------
T ss_pred             ccceEECCCCCEEE-Eec--------------------------------------------------------------
Confidence            11144443  2222 110                                                              


Q ss_pred             CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE-EEEEeCCCCc
Q 004255          325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN-INIFRIMPSC  403 (765)
Q Consensus       325 s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~-IrVWdi~~~~  403 (765)
                                         .....+.|.+||+.+++.+..+..+.. ..+++|+|||++|++++.++.. |.+|++... 
T Consensus       103 -------------------~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~-  161 (331)
T 3u4y_A          103 -------------------GLNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDAD-  161 (331)
T ss_dssp             -------------------CSSSSCEEEEEETTTTEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTT-
T ss_pred             -------------------CCCCcccEEEEECCCCCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCC-
Confidence                               001223899999999998888876544 5899999999877666655456 999998542 


Q ss_pred             ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCC
Q 004255          404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG  464 (765)
Q Consensus       404 ~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~g  464 (765)
                           |.. .     ......+..   .....+++|+|||++|++++ .+++|++||+....
T Consensus       162 -----g~~-~-----~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  209 (331)
T 3u4y_A          162 -----GVL-F-----DTGQEFISG---GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE  209 (331)
T ss_dssp             -----CCE-E-----EEEEEEECS---SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred             -----CcE-e-----ecCCccccC---CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence                 200 0     000111211   23478999999999765555 68999999987543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.38  E-value=1.7e-11  Score=137.02  Aligned_cols=103  Identities=12%  Similarity=0.148  Sum_probs=78.2

Q ss_pred             ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      .+..||+|+|||+.++..+....+|...|.+++|+|+|++||+|+.||+ |+|||++.                  ....
T Consensus       167 s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~~------------------~~~~  227 (434)
T 2oit_A          167 VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPTL------------------QEKK  227 (434)
T ss_dssp             EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTTC------------------CEEE
T ss_pred             EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccCC------------------cccc
Confidence            4567899999999999877777889999999999999999999999775 99999841                  1222


Q ss_pred             EEecc-----cccccEEEEEEccCCCEEEEEe-CCCc------EEEEeCCCCCC
Q 004255          424 KLHRG-----ITSATIQDICFSHYSQWIAIVS-SKGT------CHVFVLSPFGG  465 (765)
Q Consensus       424 ~l~rG-----~~~a~I~slaFSpDg~~Las~S-~dgT------VhIwdl~~~gg  465 (765)
                      .+...     .+...|.+++|++++.++++.+ .+|.      +++|++...+.
T Consensus       228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~  281 (434)
T 2oit_A          228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE  281 (434)
T ss_dssp             EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred             cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence            22211     1123699999999998886543 4433      89999986544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.35  E-value=1.2e-11  Score=141.79  Aligned_cols=91  Identities=9%  Similarity=0.093  Sum_probs=70.2

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      +.|.+||+.+++.. .+..|...+..++|||||++||+++.+| ..|.+||+..       |          ... .+ .
T Consensus       175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-------~----------~~~-~~-~  234 (582)
T 3o4h_A          175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-------G----------SVE-DL-E  234 (582)
T ss_dssp             EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-------C----------CEE-EC-C
T ss_pred             eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-------C----------cEE-Ec-c
Confidence            46999999988754 6788999999999999999999777655 2699999854       3          222 22 2


Q ss_pred             ccccccEEEEE--------EccCCCEEEEEeCCCcEEEEeC
Q 004255          428 GITSATIQDIC--------FSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       428 G~~~a~I~sla--------FSpDg~~Las~S~dgTVhIwdl  460 (765)
                      ++. ..+.+++        |||||+.+++++.|++++||++
T Consensus       235 ~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          235 LPS-KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSC-SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCC-cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            322 2344455        9999999999999999999999

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.34  E-value=1.3e-10  Score=125.44  Aligned_cols=78  Identities=17%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             CeEEEE-ECCCCCEEEEEEcCCC-----EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc---
Q 004255          371 PISALC-FDPSGTLLVTASVYGN-----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH---  441 (765)
Q Consensus       371 ~IsaLa-FSpdG~lLATaS~dGt-----~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp---  441 (765)
                      .+..++ |+|||++|++++..+.     .|+||++...      |.        ...+..+... ....+..++|+|   
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~------g~--------~~~~~~~~~~-~~~~~~~~a~sp~~~  319 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC------GS--------IEKQLFLSPT-PTSGGHSNAVSPCPW  319 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT------SC--------EEEEEEEEEC-SSCCTTCCCEEECTT
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC------CC--------EEEeeeeeec-CCCCcccceecCCCc
Confidence            478999 9999999988776443     7999998521      31        0111111111 112345789999   


Q ss_pred             CCCEEEEEeCC-CcEEEEeCCCC
Q 004255          442 YSQWIAIVSSK-GTCHVFVLSPF  463 (765)
Q Consensus       442 Dg~~Las~S~d-gTVhIwdl~~~  463 (765)
                      ||++|++++.+ ++|.||+++..
T Consensus       320 dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          320 SDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCEEEEEEcCCCeEEEEEEchh
Confidence            89999999865 89999999753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.34  E-value=5.9e-10  Score=119.05  Aligned_cols=104  Identities=14%  Similarity=0.141  Sum_probs=68.7

Q ss_pred             CCCeEEEEECCCCc-------E------EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 004255          347 NAGIVVVKDFVTRA-------I------ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY  413 (765)
Q Consensus       347 ~dG~V~IwDl~s~~-------~------i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~  413 (765)
                      .++.|.+|++....       .      ......+......++|+|||++|+.++..+..|++||+..       |.   
T Consensus       175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-------g~---  244 (361)
T 3scy_A          175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-------GM---  244 (361)
T ss_dssp             TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-------TE---
T ss_pred             CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-------Cc---
Confidence            35678888876433       1      1112233455788999999999988886566799999853       20   


Q ss_pred             ccCCcceEEEEEeccc-ccccEEEEEEccCCCEEEEEeCC--CcEEEEeCCCCCC
Q 004255          414 DWNSSHVHLYKLHRGI-TSATIQDICFSHYSQWIAIVSSK--GTCHVFVLSPFGG  465 (765)
Q Consensus       414 ~~~~s~~~l~~l~rG~-~~a~I~slaFSpDg~~Las~S~d--gTVhIwdl~~~gg  465 (765)
                           ...+..+.... ......+++|||||++|+++..+  ++|.||+++...+
T Consensus       245 -----~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g  294 (361)
T 3scy_A          245 -----LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG  294 (361)
T ss_dssp             -----EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC
T ss_pred             -----eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC
Confidence                 12233332111 11236899999999999777654  8999999985433

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.34  E-value=5.3e-10  Score=118.59  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             CCCeEEEEECC-CCcEE--EEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          347 NAGIVVVKDFV-TRAII--SQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       347 ~dG~V~IwDl~-s~~~i--~~~~aH~-~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      .++.|.+||+. +++..  ..+..+. .....++|+|||++|+.++..+..|+||++...     .|        ....+
T Consensus       160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g--------~~~~~  226 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-----TG--------AFTQL  226 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-----TT--------EEEEE
T ss_pred             CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CC--------ceEEe
Confidence            45789999998 45432  2233332 357789999999988887766778999998531     02        01122


Q ss_pred             EEEecccc----cccEEEEEEccCCCEEE-EEeCCCcEEEEeCCC
Q 004255          423 YKLHRGIT----SATIQDICFSHYSQWIA-IVSSKGTCHVFVLSP  462 (765)
Q Consensus       423 ~~l~rG~~----~a~I~slaFSpDg~~La-s~S~dgTVhIwdl~~  462 (765)
                      ..+.....    ...+..++|||||++|+ +...+++|.+|++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            23221111    13488999999999884 555689999999974

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.32  E-value=3.4e-10  Score=132.26  Aligned_cols=97  Identities=18%  Similarity=0.121  Sum_probs=68.4

Q ss_pred             CCCCeEEEEECC-CCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCC----EEEEEeCCCCcccCCCCCCccccCCcc
Q 004255          346 DNAGIVVVKDFV-TRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWNSSH  419 (765)
Q Consensus       346 ~~dG~V~IwDl~-s~~~i~~~~aH~~~Isa-LaFSpdG~lLATaS~dGt----~IrVWdi~~~~~~~~sG~~~~~~~~s~  419 (765)
                      ..+|.++||++. +++.+..+..|...+.. ++|+|||+.|+.++.++.    .|.+||+..       +          
T Consensus       330 ~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------~----------  392 (706)
T 2z3z_A          330 RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-------G----------  392 (706)
T ss_dssp             CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-------C----------
T ss_pred             ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-------C----------
Confidence            345677788775 56778888889888887 899999998877766553    455555532       2          


Q ss_pred             eEEEEEecccccccEEEEEEccCCCEEEEEeCC----CcEEEEeCCCC
Q 004255          420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSPF  463 (765)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d----gTVhIwdl~~~  463 (765)
                       .+..+.   +...+.+++|||||++|+.+..+    +++++||+...
T Consensus       393 -~~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          393 -KTKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             -CCEESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             -Cceecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence             122222   22358899999999999877544    46999998753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.31  E-value=1.3e-11  Score=138.04  Aligned_cols=98  Identities=13%  Similarity=0.273  Sum_probs=79.7

Q ss_pred             ccCCCCeEEEEECCCC--------c---EEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 004255          344 DMDNAGIVVVKDFVTR--------A---IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNH  411 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~--------~---~i~~~~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~  411 (765)
                      ++..||.|+|||+.++        +   .+..+.+|..+|.+|+|+|+ +.+||+++.||+ |+|||+..       +  
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~-------~--  182 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTE-------T--  182 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESS-------S--
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCC-------C--
Confidence            3567899999998654        2   25667789999999999998 899999999775 99999964       2  


Q ss_pred             ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                              ..+.... + +...|++++|||||++|++++.||+|+|||+.
T Consensus       183 --------~~~~~~~-~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          183 --------VKVCATL-P-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             --------EEEEEEE-C-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             --------cceeecc-C-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence                    2333332 3 34579999999999999999999999999987

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.30  E-value=7.4e-11  Score=145.36  Aligned_cols=95  Identities=7%  Similarity=0.024  Sum_probs=78.2

Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC---------CEEEEEeCCCCcccCCCCCCccccCC
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG---------NNINIFRIMPSCMRSGSGNHKYDWNS  417 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG---------t~IrVWdi~~~~~~~~sG~~~~~~~~  417 (765)
                      .++.|++||+.+++....+.+|...|.+++|||||++||+++.++         ..|+|||+..       +        
T Consensus       398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-------g--------  462 (1045)
T 1k32_A          398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-------R--------  462 (1045)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-------T--------
T ss_pred             CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC-------C--------
Confidence            356899999999998888889999999999999999999988744         4799999854       2        


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                         .+..+..  +...+.+++|+|||++|+.++.++...+|+..
T Consensus       463 ---~~~~l~~--~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          463 ---KIFAATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             ---EEEECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ---cEEEeeC--CCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence               3444432  23458889999999999999999999999865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.30  E-value=5.7e-11  Score=138.85  Aligned_cols=103  Identities=12%  Similarity=0.211  Sum_probs=65.9

Q ss_pred             CCCeEEEEECCCCcEEEEecc-CCCCeE----EEEECCCCCEEEEE-EcCCC------EEEEEeCCCCcccCCCCCCccc
Q 004255          347 NAGIVVVKDFVTRAIISQFKA-HTSPIS----ALCFDPSGTLLVTA-SVYGN------NINIFRIMPSCMRSGSGNHKYD  414 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~a-H~~~Is----aLaFSpdG~lLATa-S~dGt------~IrVWdi~~~~~~~~sG~~~~~  414 (765)
                      .+..|.+||+.++++...+.. |...+.    .++|+|||+.|+.+ +.++.      .|.+||+...      +.    
T Consensus       278 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~------~~----  347 (723)
T 1xfd_A          278 NVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN------SS----  347 (723)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC------SS----
T ss_pred             CeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC------CC----
Confidence            456899999999987776654 444443    78999999988865 44343      3555662121      10    


Q ss_pred             cCCcceEEEEEecccccccEEE-EEEccCCCEEEEEeCC---CcEEEEeCCCCCC
Q 004255          415 WNSSHVHLYKLHRGITSATIQD-ICFSHYSQWIAIVSSK---GTCHVFVLSPFGG  465 (765)
Q Consensus       415 ~~~s~~~l~~l~rG~~~a~I~s-laFSpDg~~Las~S~d---gTVhIwdl~~~gg  465 (765)
                          ..++..+..|.  ..+.. ++|||||++|+..+.+   ++++||+++..++
T Consensus       348 ----~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~  396 (723)
T 1xfd_A          348 ----NDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN  396 (723)
T ss_dssp             ----SCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred             ----ccceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence                00012222221  23444 6999999999877665   8999999986553

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.28  E-value=1.3e-11  Score=144.79  Aligned_cols=284  Identities=11%  Similarity=0.036  Sum_probs=158.1

Q ss_pred             CeEEEEEecCcEEEEEccCCCcceEeeeeccC---CEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (765)
Q Consensus        75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg---~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~  151 (765)
                      +++++.+.++.+++||++ .++...++..+..   .|..++++|+.             ..||+....            
T Consensus        27 g~~~~~~~d~~i~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~SpDg-------------~~la~~~~~------------   80 (719)
T 1z68_A           27 QEYLHQSADNNIVLYNIE-TGQSYTILSNRTMKSVNASNYGLSPDR-------------QFVYLESDY------------   80 (719)
T ss_dssp             SEEEEECTTSCEEEEESS-SCCEEEEECHHHHHTTTCSEEEECTTS-------------SEEEEEEEE------------
T ss_pred             CeEEEEcCCCCEEEEEcC-CCcEEEEEccccccccceeeEEECCCC-------------CeEEEEecC------------
Confidence            456766666669999994 5777777776654   48899999862             266654321            


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEE-
Q 004255          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVL-  228 (765)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~-  228 (765)
                            .+.|.      ....++|++||+.+++.+........+..++++|  +.||.+.++.|++||+.+++...... 
T Consensus        81 ------~~~~~------~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~  148 (719)
T 1z68_A           81 ------SKLWR------YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFN  148 (719)
T ss_dssp             ------EECSS------SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCC
T ss_pred             ------ceeEE------eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecC
Confidence                  01110      0013689999999998743233456788899998  68888888999999999887643211 


Q ss_pred             ecCCcccCCCCccc------cccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhh
Q 004255          229 TYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME  300 (765)
Q Consensus       229 t~p~p~~~~~~~~~------~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d  300 (765)
                      ++...  +-.+.+.      +......++++|  ++|||++.+.    .+...+. +.                 .+.  
T Consensus       149 ~~~~~--v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~----~~~~~~~-~~-----------------~~~--  202 (719)
T 1z68_A          149 GRENK--IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND----TDIPVIA-YS-----------------YYG--  202 (719)
T ss_dssp             CBTTT--EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC----TTSCEEE-EE-----------------ECC--
T ss_pred             CCcCC--eEcccccceeeeecccCcccEEECCCCCEEEEEEECC----CCCceEE-ee-----------------ccC--
Confidence            11110  0000000      000113688998  8999976431    0000000 00                 000  


Q ss_pred             hhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE--------EEeccCCCCe
Q 004255          301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--------SQFKAHTSPI  372 (765)
Q Consensus       301 ~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i--------~~~~aH~~~I  372 (765)
                            .........+.   +|.             .     ........|+|||+.+++.+        ..+.+|...+
T Consensus       203 ------~~~~~~~~~~~---yp~-------------~-----g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  255 (719)
T 1z68_A          203 ------DEQYPRTINIP---YPK-------------A-----GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF  255 (719)
T ss_dssp             ------SSSSCEEEEEE---CCB-------------T-----TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred             ------CCCCccceeec---CCC-------------C-----CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence                  00000000000   000             0     01122358999999988743        2245788899


Q ss_pred             EEEEECCCCCEEEEEEcCC---CEEEEEe----CCCCcccCCCCCCccccCCcceEEEE-EecccccccEE-----EEEE
Q 004255          373 SALCFDPSGTLLVTASVYG---NNINIFR----IMPSCMRSGSGNHKYDWNSSHVHLYK-LHRGITSATIQ-----DICF  439 (765)
Q Consensus       373 saLaFSpdG~lLATaS~dG---t~IrVWd----i~~~~~~~~sG~~~~~~~~s~~~l~~-l~rG~~~a~I~-----slaF  439 (765)
                      ..++|||||+++++....+   ..|.+||    +.+       |.        ...+.. ...+ +...|.     +++|
T Consensus       256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------g~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~  319 (719)
T 1z68_A          256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-------WD--------CPKTQEHIEES-RTGWAGGFFVSTPVF  319 (719)
T ss_dssp             EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-------EE--------CCGGGEEEEEC-SSSCSSSSSCCCCEE
T ss_pred             EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-------Cc--------eEEEEeccccc-CCceEccccCCccEE
Confidence            9999999998888865422   2477888    533       20        011111 0012 122344     7899


Q ss_pred             ccCCCEEEE--EeCCCcEEEEeCCCCCC
Q 004255          440 SHYSQWIAI--VSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       440 SpDg~~Las--~S~dgTVhIwdl~~~gg  465 (765)
                      ||||++|+.  +..+|..+||-++..++
T Consensus       320 spdg~~l~~~~~~~~g~~~l~~~~~~~~  347 (719)
T 1z68_A          320 SYDAISYYKIFSDKDGYKHIHYIKDTVE  347 (719)
T ss_dssp             CTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred             CCCCCeEEEEEEccCCceEEEEEECCCC
Confidence            999996654  55677766666554443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.28  E-value=3.2e-10  Score=118.32  Aligned_cols=103  Identities=17%  Similarity=0.256  Sum_probs=71.2

Q ss_pred             CCCeEEEEEC---CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          347 NAGIVVVKDF---VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       347 ~dG~V~IwDl---~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      .++.|.+||+   ...+.+..+..+ ..+.+++|+|+|++|++++..+..|++||+...      +        ....+.
T Consensus       104 ~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~------~--------~~~~~~  168 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDD------G--------HLVAQD  168 (343)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT------S--------CEEEEE
T ss_pred             CCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCC------C--------ceeeec
Confidence            3678999999   444555556555 358899999999999888833556999998541      2        011222


Q ss_pred             --EEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCC
Q 004255          424 --KLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG  465 (765)
Q Consensus       424 --~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg  465 (765)
                        .+.. .....+.+++|+|||++|++++ .++++++|+++...+
T Consensus       169 ~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g  212 (343)
T 1ri6_A          169 PAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG  212 (343)
T ss_dssp             EEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             cccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence              2221 1223588999999999876665 889999999976444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.27  E-value=1.1e-10  Score=143.76  Aligned_cols=94  Identities=22%  Similarity=0.266  Sum_probs=74.0

Q ss_pred             CCeEE-EEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          348 AGIVV-VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       348 dG~V~-IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ++.+. +||+.+++.. .+.+|...+.+++|||||++||+++.++ .|++||+..       |          ... .+.
T Consensus       357 ~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~-~v~~~d~~t-------g----------~~~-~~~  416 (1045)
T 1k32_A          357 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRF-EIMTVDLET-------G----------KPT-VIE  416 (1045)
T ss_dssp             TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEE-EEE
T ss_pred             CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCC-eEEEEECCC-------C----------ceE-Eec
Confidence            66788 9999887654 4558889999999999999999999855 699999965       3          222 222


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCC----------cEEEEeCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKG----------TCHVFVLSP  462 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dg----------TVhIwdl~~  462 (765)
                      .+ +...|.+++|||||++||+++.++          +|++||+..
T Consensus       417 ~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          417 RS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             cC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            23 234578999999999999988755          999999975

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.24  E-value=1.4e-09  Score=117.29  Aligned_cols=102  Identities=17%  Similarity=0.202  Sum_probs=68.6

Q ss_pred             CCeEEEEECC-CCcEE--EEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE-
Q 004255          348 AGIVVVKDFV-TRAII--SQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH-  421 (765)
Q Consensus       348 dG~V~IwDl~-s~~~i--~~~~--aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~-  421 (765)
                      ++.|.+||+. +++..  ..+.  .|...+..++|+|||++|++++..+..|.||++...     .|.        ... 
T Consensus       166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~--------~~~~  232 (365)
T 1jof_A          166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-----THM--------PVYT  232 (365)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----TCC--------EEEE
T ss_pred             CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-----CCc--------EEEc
Confidence            3578999988 66542  3343  345678999999999999998876678999987431     021        011 


Q ss_pred             EEEEe---cccc--cc------cEEEEE-EccCCCEEEEEeCCC------cEEEEeCCC
Q 004255          422 LYKLH---RGIT--SA------TIQDIC-FSHYSQWIAIVSSKG------TCHVFVLSP  462 (765)
Q Consensus       422 l~~l~---rG~~--~a------~I~sla-FSpDg~~Las~S~dg------TVhIwdl~~  462 (765)
                      ...+.   .+..  ..      .+.+++ |||||++|++++.+.      +|.+|+++.
T Consensus       233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~  291 (365)
T 1jof_A          233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred             cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence            11221   1111  11      488999 999999998776432      899999974

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.24  E-value=8.4e-10  Score=114.81  Aligned_cols=217  Identities=11%  Similarity=0.015  Sum_probs=131.0

Q ss_pred             CEEEEEECCCCeEEEEEeCCC---CEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecC-CcccCCCCccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYP-VPQLAGQGAVGIN  244 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s---~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~l~tl~t~p-~p~~~~~~~~~~~  244 (765)
                      ++|++||+.+++.+..+....   .+..+++++  +.|+++.  ++.|++||+.+++.+.++.... ..    .   +  
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~---~--   81 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----R---V--   81 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----E---E--
T ss_pred             CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc----c---c--
Confidence            689999999999999998776   688899987  4565543  3579999999999877776321 10    0   0  


Q ss_pred             cccceeEEcc--ceEEEecCCceec------CCcc-ccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecc
Q 004255          245 VGYGPMAVGP--RWLAYASNTLLLS------NSGR-LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK  315 (765)
Q Consensus       245 ~~~~~~Alsp--r~LAyas~~~~~~------~~G~-~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~  315 (765)
                      .....++++|  ++|+++....-..      ..+. ..++..+            +..+                +.+. 
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~------------~~~~----------------~~~~-  132 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET------------LSRR----------------KAFE-  132 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT------------TEEE----------------EEEE-
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC------------CcEE----------------EEEe-
Confidence            0123477887  6777764110000      0000 0111000            0000                0110 


Q ss_pred             cccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcCCCE
Q 004255          316 YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVYGNN  393 (765)
Q Consensus       316 ~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~--~~IsaLaFSpdG~lLATaS~dGt~  393 (765)
                            .........++++++...    .+  ++.|.+||+.+++.+..+..+.  .++   +|+|||++|+.++..+..
T Consensus       133 ------~~~~~~~~~~s~dg~~l~----~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~  197 (337)
T 1pby_B          133 ------APRQITMLAWARDGSKLY----GL--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGV  197 (337)
T ss_dssp             ------CCSSCCCEEECTTSSCEE----EE--SSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTE
T ss_pred             ------CCCCcceeEECCCCCEEE----Ee--CCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCc
Confidence                  001111223344444322    12  5789999999999888887654  443   899999988766654543


Q ss_pred             -----------------------EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255          394 -----------------------INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (765)
Q Consensus       394 -----------------------IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S  450 (765)
                                             |.+||+..       +.         .....+.  .....+.+++|+|||++|+++ 
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-------~~---------~~~~~~~--~~~~~~~~~~~s~dg~~l~~~-  258 (337)
T 1pby_B          198 MATPFYTARKDIDPADPTAYRTGLLTMDLET-------GE---------MAMREVR--IMDVFYFSTAVNPAKTRAFGA-  258 (337)
T ss_dssp             EEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-------CC---------EEEEEEE--ECSSCEEEEEECTTSSEEEEE-
T ss_pred             eeeeeeccccccccccccccccceEEEeCCC-------CC---------ceEeecC--CCCCceeeEEECCCCCEEEEe-
Confidence                                   57888754       21         1122222  122458899999999999988 


Q ss_pred             CCCcEEEEeCCC
Q 004255          451 SKGTCHVFVLSP  462 (765)
Q Consensus       451 ~dgTVhIwdl~~  462 (765)
                       +++|++||+..
T Consensus       259 -~~~v~~~d~~~  269 (337)
T 1pby_B          259 -YNVLESFDLEK  269 (337)
T ss_dssp             -ESEEEEEETTT
T ss_pred             -CCeEEEEECCC
Confidence             79999999864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.17  E-value=2.7e-09  Score=111.74  Aligned_cols=57  Identities=18%  Similarity=0.086  Sum_probs=46.1

Q ss_pred             CEEEEEECCCCeEEEEEeCCC--CEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s--~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~l~tl~t  229 (765)
                      ++|.+||+.+++.+.++....  .+..+++++  +.++++.  +++|++||+.+++.+..+..
T Consensus        21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B           21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            689999999999999998776  778888887  4555543  45799999999988777653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.15  E-value=1.7e-09  Score=123.76  Aligned_cols=85  Identities=15%  Similarity=0.146  Sum_probs=65.9

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEE--------ECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALC--------FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLa--------FSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      .|.+||+.+++.. .+..|...+..++        |+|||.++++++.+| .++||++ -                  ..
T Consensus       219 ~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g-~~~l~~~-g------------------~~  277 (582)
T 3o4h_A          219 RLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG-RSAVFID-G------------------ER  277 (582)
T ss_dssp             EEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT-EEEEEET-T------------------EE
T ss_pred             EEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC-cEEEEEE-C------------------Ce
Confidence            7899999998887 8888888887777        999999999999866 5999997 2                  12


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCc-EEEEeCC
Q 004255          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGT-CHVFVLS  461 (765)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgT-VhIwdl~  461 (765)
                      +..     ....|.+++|| ||+++++++.+.+ -.||.++
T Consensus       278 ~~~-----~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          278 VEA-----PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             ECC-----CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             ecc-----CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence            211     12458899999 9999999888765 3444444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.11  E-value=7.9e-10  Score=131.10  Aligned_cols=292  Identities=14%  Similarity=0.085  Sum_probs=156.6

Q ss_pred             CCeEEEEEecCcEEEEEccCCCcceEeeeeccCC---EEE--EEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCC
Q 004255           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGP---VSF--LQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ  148 (765)
Q Consensus        74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~---V~~--v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~  148 (765)
                      ++++|+.+ ++.+++||+. +++...++..+...   +.+  +.++|+             +..||+...+..       
T Consensus        27 dg~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spd-------------g~~l~~~~~~~~-------   84 (740)
T 4a5s_A           27 DHEYLYKQ-ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPD-------------GQFILLEYNYVK-------   84 (740)
T ss_dssp             SSEEEEEE-TTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTT-------------SSEEEEEEEEEE-------
T ss_pred             CCcEEEEc-CCcEEEEECC-CCceEEEEechhhhhhcccccceEECCC-------------CCEEEEEECCee-------
Confidence            35788887 6679999995 67778888877643   223  667765             235665443210       


Q ss_pred             CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEE
Q 004255          149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFS  226 (765)
Q Consensus       149 ~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~t  226 (765)
                             +    |.      +.....+.+||+++|+......+...+..++++|  +.||.+.++.|++||+.+++..+ 
T Consensus        85 -------~----~r------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~-  146 (740)
T 4a5s_A           85 -------Q----WR------HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR-  146 (740)
T ss_dssp             -------C----SS------SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-
T ss_pred             -------e----EE------EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-
Confidence                   0    00      0012578899999998664334567899999998  78888888999999999887432 


Q ss_pred             EEecCCcccCCCCccc------cccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeeh
Q 004255          227 VLTYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA  298 (765)
Q Consensus       227 l~t~p~p~~~~~~~~~------~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a  298 (765)
                      |........+-.+.+.      +-.....+++||  ++|||...+.-    ....|....                  +.
T Consensus       147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~----~v~~~~~~~------------------~~  204 (740)
T 4a5s_A          147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT----EVPLIEYSF------------------YS  204 (740)
T ss_dssp             CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT----TCCEEEEEE------------------CC
T ss_pred             EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEccc----CCceEEEEe------------------ec
Confidence            2211110000000000      000113478998  89999753210    000000000                  00


Q ss_pred             hhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC---Cc--EEEEec------c
Q 004255          299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT---RA--IISQFK------A  367 (765)
Q Consensus       299 ~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s---~~--~i~~~~------a  367 (765)
                      ..   .   +.......+   -+|.          .+        .......|.|||+.+   ++  ....+.      +
T Consensus       205 ~~---~---~~~~~~~~~---~yp~----------~G--------~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~  257 (740)
T 4a5s_A          205 DE---S---LQYPKTVRV---PYPK----------AG--------AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLI  257 (740)
T ss_dssp             ST---T---CSSCEEEEE---ECCB----------TT--------SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHT
T ss_pred             CC---C---CCCCcceee---cCCC----------Cc--------CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCC
Confidence            00   0   000000000   0000          00        111234789999998   73  223343      3


Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCC-cceEEEEEecccccccE-----EEEE
Q 004255          368 HTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNS-SHVHLYKLHRGITSATI-----QDIC  438 (765)
Q Consensus       368 H~~~IsaLaFSpdG~lLATaS~dG---t~IrVWdi~~~~~~~~sG~~~~~~~~-s~~~l~~l~rG~~~a~I-----~sla  438 (765)
                      |...|..++|+|||++++.....+   ..|++||+.+       |...  +.. ....+.+  .+ +...|     .+.+
T Consensus       258 ~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-------g~~~--~~~~~~~~l~~--~~-~~~~v~~~~~~~p~  325 (740)
T 4a5s_A          258 GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-------SSGR--WNCLVARQHIE--MS-TTGWVGRFRPSEPH  325 (740)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-------TTTE--EEECGGGCEEE--EC-SSSCSSSSSCCCCE
T ss_pred             CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-------Cccc--cceeEEEEeee--cc-CCceEccCcCCCce
Confidence            888899999999999877665433   2589999865       2100  000 0011211  12 12222     3689


Q ss_pred             EccCCCEEE-EEe-CCCcEEEEeCCCCCCC
Q 004255          439 FSHYSQWIA-IVS-SKGTCHVFVLSPFGGD  466 (765)
Q Consensus       439 FSpDg~~La-s~S-~dgTVhIwdl~~~gg~  466 (765)
                      |||||++|+ ..+ .+|.-|||-++..++.
T Consensus       326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          326 FTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             EcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            999999887 665 5666666554444443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.09  E-value=5e-07  Score=92.94  Aligned_cols=95  Identities=16%  Similarity=0.185  Sum_probs=69.0

Q ss_pred             CCeEEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          348 AGIVVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH--~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      ++.|++||. +++.+..+..+  ...+..|+|+++|+++++...++..|++||..        |          ..+..+
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--------g----------~~~~~~  244 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------G----------QLISAL  244 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------S----------CEEEEE
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--------C----------CEEEEE
Confidence            567889997 45566666543  46788999999999998887644369999952        3          244444


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      ..+.....+.+++|+|||+++++ +.+++|+||++..
T Consensus       245 ~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          245 ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            43322234789999999987766 6799999999865

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.08  E-value=5.7e-10  Score=130.79  Aligned_cols=51  Identities=18%  Similarity=0.228  Sum_probs=41.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCC----CEEEEEecC--CeEEEEeC----------CeEEEEECCCCce
Q 004255          173 TAVRFYSFQSHCYEHVLRFRS----SVCMVRCSP--RIVAVGLA----------TQIYCFDALTLEN  223 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s----~V~sV~~s~--~~LaV~~~----------~~I~iwD~~t~~~  223 (765)
                      ++|++||+.+++....+..+.    .|.+++++|  +.|+.+..          .+|++||+.+++.
T Consensus        36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~  102 (719)
T 1z68_A           36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF  102 (719)
T ss_dssp             SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence            589999999999888777653    388999987  67776653          6799999999865

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.08  E-value=1.9e-08  Score=107.73  Aligned_cols=97  Identities=12%  Similarity=0.056  Sum_probs=57.7

Q ss_pred             CeEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcC-CC---EEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          349 GIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVY-GN---NINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~--~~IsaLaFSpdG~lLATaS~d-Gt---~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      ..|.++|+..++. ..+..+.  ..+..++|||||+.||..+.+ +.   .|.+||+..       |.        .+.+
T Consensus       216 ~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------g~--------~~~l  279 (388)
T 3pe7_A          216 ARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-------LE--------NRQL  279 (388)
T ss_dssp             CSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-------CC--------EEEE
T ss_pred             ceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-------Cc--------eEEE
Confidence            3577778765543 4444444  357889999999988765543 32   399999864       31        1233


Q ss_pred             EEEecccccc--cEEEEEEccCCCEEEEE---------eCCCcEEEEeCCC
Q 004255          423 YKLHRGITSA--TIQDICFSHYSQWIAIV---------SSKGTCHVFVLSP  462 (765)
Q Consensus       423 ~~l~rG~~~a--~I~slaFSpDg~~Las~---------S~dgTVhIwdl~~  462 (765)
                      ..+. +....  ....++|||||++|+..         ..+..|.+||+..
T Consensus       280 ~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~  329 (388)
T 3pe7_A          280 TSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN  329 (388)
T ss_dssp             EEEC-CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred             EcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence            3332 10000  01124799999998865         4456899999875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.06  E-value=2e-08  Score=107.48  Aligned_cols=255  Identities=11%  Similarity=-0.009  Sum_probs=138.3

Q ss_pred             CCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      +++.|+.+..+ .+.+||++ .++...++..+.+.+....+..+|           ...+|+.+..+.. ...       
T Consensus        91 dg~~l~~~~~~~~l~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~-----------dg~~l~~~~~~~~-~~~-------  150 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLA-TLEENVVYQVPAEWVGYGTWVANS-----------DCTKLVGIEIRRE-DWV-------  150 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETT-TCCEEEEEECCTTEEEEEEEEECT-----------TSSEEEEEEEEGG-GCC-------
T ss_pred             CCCEEEEEeCCCeEEEEECC-CCcceeeeechhhcccccceeECC-----------CCCeeccccccCc-ccc-------
Confidence            45566666654 69999995 577777777666666555543222           1224443221110 000       


Q ss_pred             CCCcccCCcCC-CCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEEeC-------CeEEEEECCCC
Q 004255          153 LGGVRDGMMDS-QSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLA-------TQIYCFDALTL  221 (765)
Q Consensus       153 ~~~~r~g~~~~-~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~~~-------~~I~iwD~~t~  221 (765)
                          ....|.. ...........|.+||+.+++..........+..++++|   +.|+.+..       ..|+++|+.+.
T Consensus       151 ----~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (388)
T 3pe7_A          151 ----PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT  226 (388)
T ss_dssp             ----CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred             ----cccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence                0000000 000000123689999999998776666677888999988   45655442       26888888765


Q ss_pred             ceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255          222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM  299 (765)
Q Consensus       222 ~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~  299 (765)
                      + ...+..+...           ......+++|  ++|||.+..                                    
T Consensus       227 ~-~~~l~~~~~~-----------~~~~~~~~spdg~~l~~~~~~------------------------------------  258 (388)
T 3pe7_A          227 N-MRKVKTHAEG-----------ESCTHEFWVPDGSALVYVSYL------------------------------------  258 (388)
T ss_dssp             C-CEESCCCCTT-----------EEEEEEEECTTSSCEEEEEEE------------------------------------
T ss_pred             c-eEEeeeCCCC-----------cccccceECCCCCEEEEEecC------------------------------------
Confidence            4 2333221110           0012234554  444443311                                    


Q ss_pred             hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE--EEEeccCCCC---eEE
Q 004255          300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAHTSP---ISA  374 (765)
Q Consensus       300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~--i~~~~aH~~~---Isa  374 (765)
                                                                  .+...+.|.+||+.+++.  +..+.++...   ...
T Consensus       259 --------------------------------------------~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~  294 (388)
T 3pe7_A          259 --------------------------------------------KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG  294 (388)
T ss_dssp             --------------------------------------------TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred             --------------------------------------------CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence                                                        011234688999988863  3344431110   112


Q ss_pred             EEECCCCCEEEEEE--------cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc---------cccEEEE
Q 004255          375 LCFDPSGTLLVTAS--------VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT---------SATIQDI  437 (765)
Q Consensus       375 LaFSpdG~lLATaS--------~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~---------~a~I~sl  437 (765)
                      ++|+|||+.|+...        ..+..|.+||+..       +           .+..+..+..         ...+.++
T Consensus       295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-------~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~  356 (388)
T 3pe7_A          295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-------G-----------TQHRVARHDTSWKVFEGDRQVTHPHP  356 (388)
T ss_dssp             SEEEEEECCC------------CCCCEEEEEETTT-------T-----------EEEEEEECCCCCCCBTTBSSTTCCCC
T ss_pred             CeEccCCCcceeEeeeccccccCCCCEEEEEeccC-------C-----------ceEEeccccCcccccccccccCCCCc
Confidence            37999999988653        2245799999854       2           3334432211         0036788


Q ss_pred             EEccCCCEEEEEeC-CCcEEEEeCCC
Q 004255          438 CFSHYSQWIAIVSS-KGTCHVFVLSP  462 (765)
Q Consensus       438 aFSpDg~~Las~S~-dgTVhIwdl~~  462 (765)
                      +|||||++|+.++. +|..+||.++.
T Consensus       357 ~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          357 SFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             cCCCCCCEEEEEecCCCceeEEEEEC
Confidence            99999999887764 78888988764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.00  E-value=1.5e-07  Score=102.22  Aligned_cols=95  Identities=8%  Similarity=0.078  Sum_probs=65.8

Q ss_pred             CCCeEEEEECCCCc--EEEEecc------CC----CCeEEEEECCCCCEEEEEEc-C---------CCEEEEEeCCCCcc
Q 004255          347 NAGIVVVKDFVTRA--IISQFKA------HT----SPISALCFDPSGTLLVTASV-Y---------GNNINIFRIMPSCM  404 (765)
Q Consensus       347 ~dG~V~IwDl~s~~--~i~~~~a------H~----~~IsaLaFSpdG~lLATaS~-d---------Gt~IrVWdi~~~~~  404 (765)
                      .+|.|.++|+...+  .+..+.-      +.    .....++|+|||..|..+.. +         ...|.|||+.+   
T Consensus       219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t---  295 (361)
T 2oiz_A          219 YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT---  295 (361)
T ss_dssp             TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT---
T ss_pred             CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC---
Confidence            56889999987653  2222211      11    11123789999888776643 1         23699999865   


Q ss_pred             cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                          +          +.+.++.-|.    ..+|+|+|||++|++++. ++|.|||..+.
T Consensus       296 ----~----------~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          296 ----K----------QRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             ----T----------EEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             ----C----------cEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence                2          4666665442    789999999999998887 99999998864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.92  E-value=5.2e-07  Score=96.22  Aligned_cols=230  Identities=9%  Similarity=-0.042  Sum_probs=141.8

Q ss_pred             CeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      +++.++...+ .+.+||.. ++++...+. .....+.|++.|+             . .|.+....              
T Consensus        54 ~~lyv~~~~~~~v~viD~~-t~~~~~~i~-~~~~p~~i~~~~~-------------g-~lyv~~~~--------------  103 (328)
T 3dsm_A           54 GIGWIVVNNSHVIFAIDIN-TFKEVGRIT-GFTSPRYIHFLSD-------------E-KAYVTQIW--------------  103 (328)
T ss_dssp             TEEEEEEGGGTEEEEEETT-TCCEEEEEE-CCSSEEEEEEEET-------------T-EEEEEEBS--------------
T ss_pred             CEEEEEEcCCCEEEEEECc-ccEEEEEcC-CCCCCcEEEEeCC-------------C-eEEEEECC--------------
Confidence            4577777654 49999995 566655553 2345677777653             1 23332211              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------CEEEEEecCCeEEEEe---CCeEEEEECCCCcee
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSPRIVAVGL---ATQIYCFDALTLENK  224 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s------~V~sV~~s~~~LaV~~---~~~I~iwD~~t~~~l  224 (765)
                                        .++|.+||+++++.+.++....      ....|++..+.|.++.   ++.|.+||+.+++.+
T Consensus       104 ------------------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A          104 ------------------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             ------------------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             ------------------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence                              2589999999999998887554      5555666666555553   568999999999887


Q ss_pred             EEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhh
Q 004255          225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS  302 (765)
Q Consensus       225 ~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~  302 (765)
                      .++.....|              ..+++++  ++++.....                                       
T Consensus       166 ~~i~~g~~p--------------~~i~~~~dG~l~v~~~~~---------------------------------------  192 (328)
T 3dsm_A          166 DELTIGIQP--------------TSLVMDKYNKMWTITDGG---------------------------------------  192 (328)
T ss_dssp             EEEECSSCB--------------CCCEECTTSEEEEEBCCB---------------------------------------
T ss_pred             EEEEcCCCc--------------cceEEcCCCCEEEEECCC---------------------------------------
Confidence            777643222              1234443  211111000                                       


Q ss_pred             hhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC-CCCeEEEEECCCC
Q 004255          303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSG  381 (765)
Q Consensus       303 k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH-~~~IsaLaFSpdG  381 (765)
                                   +.        .               .......+.|.++|..+++.+..+... ......|+|+|||
T Consensus       193 -------------~~--------~---------------~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~  236 (328)
T 3dsm_A          193 -------------YE--------G---------------SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR  236 (328)
T ss_dssp             -------------CT--------T---------------CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred             -------------cc--------C---------------CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence                         00        0               000112578999999999888777533 2357899999999


Q ss_pred             CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC-CCEEEEE----eCCCcEE
Q 004255          382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY-SQWIAIV----SSKGTCH  456 (765)
Q Consensus       382 ~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD-g~~Las~----S~dgTVh  456 (765)
                      ++|..+..   .|.+||+.+       +...    .  ...  +..+  ......|+++|+ ++..++.    ..+++|.
T Consensus       237 ~~lyv~~~---~v~~~d~~t-------~~~~----~--~~~--~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~  296 (328)
T 3dsm_A          237 DTLYWINN---DIWRMPVEA-------DRVP----V--RPF--LEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVY  296 (328)
T ss_dssp             CEEEEESS---SEEEEETTC-------SSCC----S--SCS--BCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEE
T ss_pred             CEEEEEcc---EEEEEECCC-------Ccee----e--eee--ecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEE
Confidence            99987754   488999854       2100    0  000  0001  234788999995 5555555    5789999


Q ss_pred             EEeCC
Q 004255          457 VFVLS  461 (765)
Q Consensus       457 Iwdl~  461 (765)
                      +||.+
T Consensus       297 v~d~~  301 (328)
T 3dsm_A          297 RYSPQ  301 (328)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            99986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.87  E-value=4.6e-08  Score=104.42  Aligned_cols=100  Identities=14%  Similarity=0.113  Sum_probs=62.9

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEc---------------CCCEEEEEeCCCCcccCCCCCCc
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASV---------------YGNNINIFRIMPSCMRSGSGNHK  412 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp-dG~lLATaS~---------------dGt~IrVWdi~~~~~~~~sG~~~  412 (765)
                      +.|.+||+.+++...... .. ... ++|+| ||++|++++.               .+..|.+||+..       +   
T Consensus       264 ~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-------~---  330 (396)
T 3c5m_A          264 RVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-------K---  330 (396)
T ss_dssp             EEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-------T---
T ss_pred             ceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-------C---
Confidence            468999998876533221 11 233 89999 9999988652               235699999854       2   


Q ss_pred             cccCCcceEEEEEeccccc---------ccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCCccc
Q 004255          413 YDWNSSHVHLYKLHRGITS---------ATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~---------a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~gg~~~~  469 (765)
                              .+..+..+...         ..+.+++|+|||++|+.++. ++...||.++..++...+
T Consensus       331 --------~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~  389 (396)
T 3c5m_A          331 --------SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHL  389 (396)
T ss_dssp             --------BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred             --------ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccc
Confidence                    11122211110         01456899999999887775 677888888766665544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.86  E-value=1.3e-07  Score=109.55  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=66.3

Q ss_pred             CeEEEEECC-CC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-EEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          349 GIVVVKDFV-TR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       349 G~V~IwDl~-s~---~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt-~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      ..|.+||+. ++   +......+|...+..++|+|||+++++++.+|. .|.+||+..       |           .+.
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-------~-----------~~~  278 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-------G-----------AAT  278 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-------C-----------CEE
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-------C-----------cee
Confidence            479999998 56   444444566789999999999998888877553 344444422       2           112


Q ss_pred             EEecccccc-------cEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          424 KLHRGITSA-------TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       424 ~l~rG~~~a-------~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      .+..+....       .+.+++|+||++++++++. ++++||.++..++
T Consensus       279 ~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~  326 (662)
T 3azo_A          279 QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG  326 (662)
T ss_dssp             ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred             ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence            222111110       1567999999999999999 9999997765444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.85  E-value=8.2e-07  Score=93.54  Aligned_cols=96  Identities=11%  Similarity=0.188  Sum_probs=67.0

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~Isa-LaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ...|.+||  +++....+..|...+.. ++|+ || ++++++.++ .++|| +..       |          .. ..+.
T Consensus       243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~-~~~l~-~~~-------g----------~~-~~~~  298 (347)
T 2gop_A          243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG-SVNLY-IWD-------G----------EI-KPIA  298 (347)
T ss_dssp             SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT-EEEEE-EES-------S----------SE-EEEE
T ss_pred             cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC-cEEEE-EcC-------C----------ce-EEEe
Confidence            35688888  66665556677888886 9999 99 999998866 59999 842       3          12 2333


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcE-EEEeCCCCCCCccccccc
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTC-HVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTV-hIwdl~~~gg~~~~~~h~  473 (765)
                      .+  ...|.+++|+|  +++++++.+++. +||.++  +....+..|+
T Consensus       299 ~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n  340 (347)
T 2gop_A          299 KG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYN  340 (347)
T ss_dssp             CS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTT
T ss_pred             cC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEecccc
Confidence            33  34689999999  677777777765 899887  4333344444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.82  E-value=2.4e-08  Score=118.34  Aligned_cols=169  Identities=12%  Similarity=0.136  Sum_probs=111.7

Q ss_pred             CCCCEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCcee
Q 004255          191 FRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLL  266 (765)
Q Consensus       191 ~~s~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~  266 (765)
                      |.....++++++  ++|+.+ ++.|++||+.++++...+..+....        .+.....+++||  ++||++....  
T Consensus        15 ~~~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~Spdg~~l~~~~~~~--   83 (740)
T 4a5s_A           15 YRLKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDE--------FGHSINDYSISPDGQFILLEYNYV--   83 (740)
T ss_dssp             SCCCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTT--------CCSCCCEEEECTTSSEEEEEEEEE--
T ss_pred             ccccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhh--------hcccccceEECCCCCEEEEEECCe--
Confidence            444566788887  566666 8899999999999866655544310        000112367787  7777775421  


Q ss_pred             cCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccC
Q 004255          267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD  346 (765)
Q Consensus       267 ~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~  346 (765)
                                                                   +..++                             .
T Consensus        84 ---------------------------------------------~~~r~-----------------------------~   89 (740)
T 4a5s_A           84 ---------------------------------------------KQWRH-----------------------------S   89 (740)
T ss_dssp             ---------------------------------------------ECSSS-----------------------------C
T ss_pred             ---------------------------------------------eeEEE-----------------------------c
Confidence                                                         00000                             1


Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ..|.+.|||+.+++. ..+..|...+...+|||||+.||.++.  ..|.|||+..       |.           ...+.
T Consensus        90 ~~~~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~-------~~-----------~~~lt  148 (740)
T 4a5s_A           90 YTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWN--NDIYVKIEPN-------LP-----------SYRIT  148 (740)
T ss_dssp             EEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEET--TEEEEESSTT-------SC-----------CEECC
T ss_pred             cceEEEEEECCCCcE-EEcccCCCcceeeEECCCCCEEEEEEC--CeEEEEECCC-------Cc-----------eEEEc
Confidence            235789999999875 457788889999999999999999865  4699999854       21           11111


Q ss_pred             -ccccc----------------ccEEEEEEccCCCEEEEEeCCCc-EEEEeCCCCCC
Q 004255          427 -RGITS----------------ATIQDICFSHYSQWIAIVSSKGT-CHVFVLSPFGG  465 (765)
Q Consensus       427 -rG~~~----------------a~I~slaFSpDg~~Las~S~dgT-VhIwdl~~~gg  465 (765)
                       .|...                .....++|||||++||.++.|.+ +.+|++..++.
T Consensus       149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~  205 (740)
T 4a5s_A          149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD  205 (740)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS
T ss_pred             CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC
Confidence             11110                01134899999999999987776 88998865543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.82  E-value=6.5e-07  Score=95.43  Aligned_cols=91  Identities=9%  Similarity=-0.000  Sum_probs=58.5

Q ss_pred             CeEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcCC----CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          349 GIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~--~~IsaLaFSpdG~lLATaS~dG----t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      ..|.+||+.+++.. .+..+.  ..+..++|+|||++|+.++.++    ..|.+||+..       |.        ...+
T Consensus       216 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------g~--------~~~l  279 (396)
T 3c5m_A          216 ARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-------LE--------NEEV  279 (396)
T ss_dssp             CCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-------CC--------EEEE
T ss_pred             ceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-------CC--------eEEe
Confidence            35777887665533 333332  3578899999999888776532    3499999854       21        1222


Q ss_pred             EEEecccccccEEEEEEcc-CCCEEEEEe----------------CCCcEEEEeCCC
Q 004255          423 YKLHRGITSATIQDICFSH-YSQWIAIVS----------------SKGTCHVFVLSP  462 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSp-Dg~~Las~S----------------~dgTVhIwdl~~  462 (765)
                      ..+. +     .. ++|+| ||++|+.++                .+..|.+||+..
T Consensus       280 ~~~~-~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          280 MVMP-P-----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             EECC-S-----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             eeCC-C-----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence            2211 1     23 89999 999998765                246788888764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.81  E-value=2e-06  Score=91.39  Aligned_cols=98  Identities=14%  Similarity=0.096  Sum_probs=71.4

Q ss_pred             CCCeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEc------CCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255          347 NAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASV------YGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~--aH~~~IsaLaFSpdG~lLATaS~------dGt~IrVWdi~~~~~~~~sG~~~~~~~~s  418 (765)
                      .++.|++||..+++.+..+.  .+...+.+++|+| |.++++.+.      .+..|++||...       |         
T Consensus       216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-------g---------  278 (329)
T 3fvz_A          216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-------G---------  278 (329)
T ss_dssp             TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-------C---------
T ss_pred             CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-------C---------
Confidence            46789999999899888884  5667889999999 544444332      123599999854       3         


Q ss_pred             ceEEEEEecc-cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          419 HVHLYKLHRG-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       419 ~~~l~~l~rG-~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                       ..+..+..+ .......+|+|+|||+.+++.+.+++|++|++..
T Consensus       279 -~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          279 -EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             -CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             -eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence             345554211 1123589999999998888889999999999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.79  E-value=4.9e-06  Score=88.61  Aligned_cols=178  Identities=6%  Similarity=-0.049  Sum_probs=117.0

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC-CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~-~~LaV~~--~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (765)
                      ++|.+||.++++.+.++........|++++ ..|.++.  ++.|++||+.+++...++.......   +           
T Consensus        64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~---~-----------  129 (328)
T 3dsm_A           64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDM---E-----------  129 (328)
T ss_dssp             TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT---T-----------
T ss_pred             CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccc---c-----------
Confidence            589999999999999997666788888843 4555544  6789999999998777665322100   0           


Q ss_pred             eEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCc
Q 004255          250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV  329 (765)
Q Consensus       250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~  329 (765)
                      . -.|.-|++.+.. +                           +|                                   
T Consensus       130 ~-~~p~~i~~~~~~-l---------------------------yv-----------------------------------  145 (328)
T 3dsm_A          130 S-GSTEQMVQYGKY-V---------------------------YV-----------------------------------  145 (328)
T ss_dssp             T-CBCCCEEEETTE-E---------------------------EE-----------------------------------
T ss_pred             C-CCcceEEEECCE-E---------------------------EE-----------------------------------
Confidence            0 001122221110 0                           00                                   


Q ss_pred             cCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC---------CCEEEEEeCC
Q 004255          330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY---------GNNINIFRIM  400 (765)
Q Consensus       330 s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d---------Gt~IrVWdi~  400 (765)
                                   +....++.|.++|+.+++.+..+..... ...++|+|+|++++++..+         ...|.+||..
T Consensus       146 -------------~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~  211 (328)
T 3dsm_A          146 -------------NCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE  211 (328)
T ss_dssp             -------------EECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred             -------------EcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence                         0011367899999999998888875433 4679999999988877653         1468999975


Q ss_pred             CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       401 ~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      +       +          ..+..+.-.. ......++|+||+++|.++..  +|.+||+..
T Consensus       212 t-------~----------~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t  253 (328)
T 3dsm_A          212 T-------F----------TVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEA  253 (328)
T ss_dssp             T-------T----------EEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred             C-------C----------eEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence            4       2          2333332210 124688999999999988765  888888764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.75  E-value=1e-06  Score=92.80  Aligned_cols=82  Identities=7%  Similarity=0.084  Sum_probs=54.5

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-------CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-------t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      .|.++|  +++ +..+..+ ..+..+  +|||++||.++.++       ..|.+||  .       |           ..
T Consensus       201 ~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-------~-----------~~  254 (347)
T 2gop_A          201 DIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-------K-----------EV  254 (347)
T ss_dssp             EEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-------S-----------CE
T ss_pred             cEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-------C-----------ce
Confidence            455566  444 3445445 555554  99999998888643       3566776  2       2           12


Q ss_pred             EEEecccccccEEE-EEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          423 YKLHRGITSATIQD-ICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       423 ~~l~rG~~~a~I~s-laFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      ..+..+ ....|.+ ++|+ || ++++++.+++++|| +.
T Consensus       255 ~~l~~~-~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          255 MGILDE-VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             EESSTT-CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             Eecccc-CCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            233323 2245776 9999 99 99999999999999 87

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.74  E-value=4.2e-06  Score=86.70  Aligned_cols=89  Identities=11%  Similarity=0.154  Sum_probs=59.4

Q ss_pred             CCeEEEEECC-CCcE---EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          348 AGIVVVKDFV-TRAI---ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       348 dG~V~IwDl~-s~~~---i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      ++.|.+||+. +++.   ...+..+...+..|+|+++|+++++.  ++ .|.+||..        |          ..+.
T Consensus       192 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~-~v~~~~~~--------g----------~~~~  250 (296)
T 3e5z_A          192 DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD-GVHVLTPD--------G----------DELG  250 (296)
T ss_dssp             TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT-EEEEECTT--------S----------CEEE
T ss_pred             CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC-eEEEECCC--------C----------CEEE
Confidence            4567777775 4443   23333455567789999999988776  34 59999963        3          3444


Q ss_pred             EEecccccccEEEEEE-ccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          424 KLHRGITSATIQDICF-SHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       424 ~l~rG~~~a~I~slaF-SpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      .+...  .. +.+++| +||++.|.+++.++   ||.+++.
T Consensus       251 ~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~  285 (296)
T 3e5z_A          251 RVLTP--QT-TSNLCFGGPEGRTLYMTVSTE---FWSIETN  285 (296)
T ss_dssp             EEECS--SC-CCEEEEESTTSCEEEEEETTE---EEEEECS
T ss_pred             EEECC--CC-ceeEEEECCCCCEEEEEcCCe---EEEEEcc
Confidence            44422  23 788999 69999999999874   5555543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.74  E-value=1.7e-05  Score=83.22  Aligned_cols=106  Identities=7%  Similarity=0.023  Sum_probs=66.3

Q ss_pred             CeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      +++++++..+ ++.+||.+ .+++..+.......+..+.+.|+             ..+++. ..+..            
T Consensus        56 g~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~d-------------g~l~v~-~~~~~------------  108 (333)
T 2dg1_A           56 GQLFLLDVFEGNIFKINPE-TKEIKRPFVSHKANPAAIKIHKD-------------GRLFVC-YLGDF------------  108 (333)
T ss_dssp             SCEEEEETTTCEEEEECTT-TCCEEEEEECSSSSEEEEEECTT-------------SCEEEE-ECTTS------------
T ss_pred             CCEEEEECCCCEEEEEeCC-CCcEEEEeeCCCCCcceEEECCC-------------CcEEEE-eCCCC------------
Confidence            5677777654 59999984 46666655445567888888764             125432 21110            


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCCEEEEEecC--CeEEEEeC-------CeEEEEECCCC
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP--RIVAVGLA-------TQIYCFDALTL  221 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~---~~s~V~sV~~s~--~~LaV~~~-------~~I~iwD~~t~  221 (765)
                                      ...+.|.+||.++++....+.   ....+.++.+++  +++++...       ..|+.||..++
T Consensus       109 ----------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~  172 (333)
T 2dg1_A          109 ----------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR  172 (333)
T ss_dssp             ----------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred             ----------------CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC
Confidence                            012579999999887654443   124688999987  45554442       35888887665


Q ss_pred             ce
Q 004255          222 EN  223 (765)
Q Consensus       222 ~~  223 (765)
                      +.
T Consensus       173 ~~  174 (333)
T 2dg1_A          173 TV  174 (333)
T ss_dssp             CE
T ss_pred             EE
Confidence            43

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.65  E-value=2.6e-05  Score=81.51  Aligned_cols=230  Identities=7%  Similarity=-0.062  Sum_probs=149.9

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeecc-CCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~d-g~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~  151 (765)
                      .+++|++|..++ +++||.+ +|++.-.+..++ ..+..+.++|+.             .+|+  +.             
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~-tG~~~w~~~~~~~~~~~~~~~~pdG-------------~ilv--s~-------------   54 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKD-TKEIVWEYPLEKGWECNSVAATKAG-------------EILF--SY-------------   54 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETT-TTEEEEEEECCTTCCCCEEEECTTS-------------CEEE--EC-------------
T ss_pred             CCcEEEeeCCCCEEEEEECC-CCeEEEEeCCCccCCCcCeEECCCC-------------CEEE--eC-------------
Confidence            467888888776 8999984 577766666655 367888888742             2554  32             


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CCEEEEEecC--CeEEEEeC--CeEEEEECCCCceeE
Q 004255          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RIVAVGLA--TQIYCFDALTLENKF  225 (765)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~--s~V~sV~~s~--~~LaV~~~--~~I~iwD~~t~~~l~  225 (765)
                                          .+.|..||. +|+.+..++.+  ..+.++.+.+  ++|++...  .+|+.+|. +++.++
T Consensus        55 --------------------~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~  112 (276)
T 3no2_A           55 --------------------SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLS  112 (276)
T ss_dssp             --------------------BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEE
T ss_pred             --------------------CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEE
Confidence                                147999999 89999999875  4677777665  67776554  46888886 777776


Q ss_pred             EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (765)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l  305 (765)
                      ++.....-  ..+        ..    .++.++..                           +.+..             
T Consensus       113 ~~~~~~~~--~~~--------~~----~~~~v~~~---------------------------~~G~~-------------  138 (276)
T 3no2_A          113 KTEFETGI--ERP--------HA----QFRQINKN---------------------------KKGNY-------------  138 (276)
T ss_dssp             EEEECCSC--SSG--------GG----SCSCCEEC---------------------------TTSCE-------------
T ss_pred             EEeccCCC--Ccc--------cc----cccCceEC---------------------------CCCCE-------------
Confidence            65421100  000        00    00111100                           00010             


Q ss_pred             hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 004255          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV  385 (765)
Q Consensus       306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLA  385 (765)
                                                          ++....++.|.+||.. ++.+-++..+. ...++.+.++|.+|+
T Consensus       139 ------------------------------------lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v  180 (276)
T 3no2_A          139 ------------------------------------LVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLV  180 (276)
T ss_dssp             ------------------------------------EEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred             ------------------------------------EEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEE
Confidence                                                1122357899999998 99988887763 455678899999999


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc----ccccEEEEEEccCCCEEEEEeCC--------C
Q 004255          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----TSATIQDICFSHYSQWIAIVSSK--------G  453 (765)
Q Consensus       386 TaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~----~~a~I~slaFSpDg~~Las~S~d--------g  453 (765)
                      +++. ++.|..||..+       |          ..++++.+..    .-..+..++..+||+.+++.+..        +
T Consensus       181 ~~~~-~~~v~~~d~~t-------G----------~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~  242 (276)
T 3no2_A          181 ACGD-AHCFVQLNLES-------N----------RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGK  242 (276)
T ss_dssp             ECBT-TSEEEEECTTT-------C----------CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSC
T ss_pred             EeCC-CCeEEEEeCcC-------C----------cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccC
Confidence            8877 45588898754       4          5777776421    12348899999999988887421        3


Q ss_pred             cEEEEeCCCCC
Q 004255          454 TCHVFVLSPFG  464 (765)
Q Consensus       454 TVhIwdl~~~g  464 (765)
                      ..+++++++.|
T Consensus       243 ~~~~~~~~~~g  253 (276)
T 3no2_A          243 HPQLVEIDSEG  253 (276)
T ss_dssp             CCSEEEECTTS
T ss_pred             CceEEEECCCC
Confidence            45788887644

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.63  E-value=1e-06  Score=101.95  Aligned_cols=97  Identities=13%  Similarity=0.001  Sum_probs=58.1

Q ss_pred             eEEEEECCCCcEEEEeccCCCC--------eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          350 IVVVKDFVTRAIISQFKAHTSP--------ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~--------IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      .|.+||+.+++....+..|...        +..++|+|+|+++++++. ++ ++||.+...      +          ..
T Consensus       266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~------~----------~~  327 (662)
T 3azo_A          266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-AVLGILDPE------S----------GE  327 (662)
T ss_dssp             EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-CEEEEEETT------T----------TE
T ss_pred             EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-cEEEEEECC------C----------Cc
Confidence            5666666666554433333222        567999999999999988 65 899954221      1          13


Q ss_pred             EEEEecccccccEEEE-EEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q 004255          422 LYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       422 l~~l~rG~~~a~I~sl-aFSpDg~~Las~S~dgTVhIwdl~~~gg~  466 (765)
                      +..+..+  ...+.++ +++.+.-++++++.+....||.++..++.
T Consensus       328 ~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          328 LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            4444322  2346666 55544445556677777777776654443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.59  E-value=1.3e-05  Score=94.24  Aligned_cols=97  Identities=10%  Similarity=-0.029  Sum_probs=65.9

Q ss_pred             CCeEEEEECCCCc--EEEEeccCCC--CeEEEEECCCCCEEEEEEcCCC-EEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          348 AGIVVVKDFVTRA--IISQFKAHTS--PISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       348 dG~V~IwDl~s~~--~i~~~~aH~~--~IsaLaFSpdG~lLATaS~dGt-~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      .+.|.+||+.++.  ....+..|..  .|..++|++++.+++++..++. .|.+||+..       |          ..+
T Consensus       310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-------g----------~~~  372 (710)
T 2xdw_A          310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-------G----------ALL  372 (710)
T ss_dssp             TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-------C----------CEE
T ss_pred             CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-------C----------CEE
Confidence            4578889988764  2345555544  6888999988889999988664 255666533       3          244


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEe----CCCcEEEEeCCCC
Q 004255          423 YKLHRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSPF  463 (765)
Q Consensus       423 ~~l~rG~~~a~I~slaFSpDg~~Las~S----~dgTVhIwdl~~~  463 (765)
                      ..+...  ...|..++|+||++.|+...    ..+++.+||+...
T Consensus       373 ~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          373 KIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             EEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             EecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            455422  45688999999998766442    2468999998653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.57  E-value=1.3e-05  Score=92.86  Aligned_cols=181  Identities=10%  Similarity=-0.020  Sum_probs=121.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-CCeEEEEECC--CCceeEEEEecCCcccCCCCcccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~--t~~~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      ++|.++|..+++.+.++.....+..+.+++  ++|.++. ++.|.+||+.  +++.+.++.....               
T Consensus       177 ~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---------------  241 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---------------  241 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---------------
T ss_pred             CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---------------
Confidence            689999999999999998877888999987  6666655 4589999995  8877766653221               


Q ss_pred             ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (765)
Q Consensus       248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~  327 (765)
                            |+.|++....                       .|++.-+.                                 
T Consensus       242 ------P~~ia~s~~~-----------------------~pDGk~l~---------------------------------  259 (567)
T 1qks_A          242 ------ARSIETSKME-----------------------GWEDKYAI---------------------------------  259 (567)
T ss_dssp             ------EEEEEECCST-----------------------TCTTTEEE---------------------------------
T ss_pred             ------CceeEEcccc-----------------------CCCCCEEE---------------------------------
Confidence                  2333443100                       00000000                                 


Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc----------CCC-CeEEEEECCCCCEEEEEEcCCCEEEE
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----------HTS-PISALCFDPSGTLLVTASVYGNNINI  396 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a----------H~~-~IsaLaFSpdG~lLATaS~dGt~IrV  396 (765)
                                     +....+++|.|+|..+.+.+..+..          |.. .+.++.+++++..++..-.+...|.+
T Consensus       260 ---------------v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          260 ---------------AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             ---------------EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             ---------------EEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence                           0012356888999999988887652          222 58899999998877766666667999


Q ss_pred             EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC
Q 004255          397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF  463 (765)
Q Consensus       397 Wdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~  463 (765)
                      +|..+.      .         ...+..+..|   ....++.|+|||++|.++. .+++|.++|+.+.
T Consensus       325 vd~~~~------~---------~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          325 VDYTDL------N---------NLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             EETTCS------S---------EEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EecCCC------c---------cceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            997541      0         0122233222   2467899999999987665 5789999999864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.57  E-value=6.3e-05  Score=87.07  Aligned_cols=235  Identities=13%  Similarity=0.099  Sum_probs=141.1

Q ss_pred             CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        75 ~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      +.++++...++ +.|+|.+ ++++...+... ..+..+.+.|+.             ..|.+ +++              
T Consensus       167 ~~~~V~~~~~~~V~viD~~-t~~v~~~i~~g-~~p~~v~~SpDG-------------r~lyv-~~~--------------  216 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGS-TYEIKTVLDTG-YAVHISRLSASG-------------RYLFV-IGR--------------  216 (567)
T ss_dssp             GEEEEEETTTTEEEEEETT-TCCEEEEEECS-SCEEEEEECTTS-------------CEEEE-EET--------------
T ss_pred             ceEEEEeCCCCeEEEEECC-CCeEEEEEeCC-CCccceEECCCC-------------CEEEE-EcC--------------
Confidence            34555554444 9999995 56565555432 246688888752             25544 321              


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECC--CCeEEEEEeCCCCEEEEEec----C--CeEEEEe--CCeEEEEECCCCce
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHCYEHVLRFRSSVCMVRCS----P--RIVAVGL--ATQIYCFDALTLEN  223 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlk--tg~~v~tL~~~s~V~sV~~s----~--~~LaV~~--~~~I~iwD~~t~~~  223 (765)
                                        ++.|.+||+.  +++.+.++........++++    +  ++|.++.  .++|.+||..|++.
T Consensus       217 ------------------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~  278 (567)
T 1qks_A          217 ------------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  278 (567)
T ss_dssp             ------------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             ------------------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence                              2589999996  89999999876667888888    3  6777654  46899999999999


Q ss_pred             eEEEEecCCcccCCCCccccccccceeEEcc--c--eEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehh
Q 004255          224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R--WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM  299 (765)
Q Consensus       224 l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r--~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~  299 (765)
                      +.++.+...+.             ....+.|  |  .|+.+...                           ..+      
T Consensus       279 ~~~i~~~~~~~-------------~~~~~~p~~rva~i~~s~~~---------------------------~~~------  312 (567)
T 1qks_A          279 KKIQSTRGMTY-------------DEQEYHPEPRVAAILASHYR---------------------------PEF------  312 (567)
T ss_dssp             EEEEECCEECT-------------TTCCEESCCCEEEEEECSSS---------------------------SEE------
T ss_pred             EEEEecccccc-------------ccccccCCCceEEEEEcCCC---------------------------CEE------
Confidence            88876422100             0000000  0  01111000                           000      


Q ss_pred             hhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEE
Q 004255          300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCF  377 (765)
Q Consensus       300 d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~--i~~~~aH~~~IsaLaF  377 (765)
                                                                ......+|.|.++|..+.+.  +..+. .......+.|
T Consensus       313 ------------------------------------------vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~  349 (567)
T 1qks_A          313 ------------------------------------------IVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGL  349 (567)
T ss_dssp             ------------------------------------------EEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEE
T ss_pred             ------------------------------------------EEEecCCCeEEEEecCCCccceeeeee-ccccccCceE
Confidence                                                      01123568899999876542  22332 2334667899


Q ss_pred             CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-ccccccEEEEE-EccCCCEEEEEe--CCC
Q 004255          378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GITSATIQDIC-FSHYSQWIAIVS--SKG  453 (765)
Q Consensus       378 SpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r-G~~~a~I~sla-FSpDg~~Las~S--~dg  453 (765)
                      +|||++|+++......|.|+|+.+       +          ..+..+.- |.....-..+. |+||+..+.+.+  .++
T Consensus       350 ~pdgr~~~va~~~sn~V~ViD~~t-------~----------kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~  412 (567)
T 1qks_A          350 DGSHRYFITAANARNKLVVIDTKE-------G----------KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD  412 (567)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTT-------T----------EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCC-------C----------cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCC
Confidence            999999988887677899999965       3          23333333 22111101122 688866655444  468


Q ss_pred             cEEEEeCCCC
Q 004255          454 TCHVFVLSPF  463 (765)
Q Consensus       454 TVhIwdl~~~  463 (765)
                      +|.|+|..+.
T Consensus       413 ~Vsvid~~~~  422 (567)
T 1qks_A          413 SVALIGTDPE  422 (567)
T ss_dssp             EEEEEECCTT
T ss_pred             eEEEecCCCC
Confidence            9999999873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.55  E-value=6.8e-05  Score=77.39  Aligned_cols=97  Identities=13%  Similarity=0.146  Sum_probs=64.0

Q ss_pred             CCeEEEEECC-CCc-----EEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255          348 AGIVVVKDFV-TRA-----IISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (765)
Q Consensus       348 dG~V~IwDl~-s~~-----~i~~~~aH~-~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~  420 (765)
                      ++.|.+||+. +++     ....+..+. .....|+++++|+++++...++ .|.+||..+       |          .
T Consensus       197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~-~i~~~d~~~-------g----------~  258 (314)
T 1pjx_A          197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDG-------G----------Q  258 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTC-------B----------S
T ss_pred             CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC-EEEEEcCCC-------C----------c
Confidence            4566777765 333     333445554 5678899999999998877644 599999743       2          1


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCC
Q 004255          421 HLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG  464 (765)
Q Consensus       421 ~l~~l~rG~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl~~~g  464 (765)
                      .+..+..  ....+.+++|++||++|.++ ..++.|..|++...|
T Consensus       259 ~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          259 PKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             CSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence            1222221  12458999999999966555 456889999987644

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.53  E-value=1.8e-05  Score=81.15  Aligned_cols=93  Identities=9%  Similarity=0.141  Sum_probs=66.5

Q ss_pred             CCeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          348 AGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~--aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      ++.|.+||.. ++.+..+.  ++...+..|+|+|+|+++++.+. +..|++||..        |          ..+..+
T Consensus       141 ~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~--------g----------~~~~~~  200 (286)
T 1q7f_A          141 VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-AHCVKVFNYE--------G----------QYLRQI  200 (286)
T ss_dssp             TTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-GTEEEEEETT--------C----------CEEEEE
T ss_pred             CCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-CCEEEEEcCC--------C----------CEEEEE
Confidence            4678888854 55555554  45567899999999998887766 4469999963        2          244444


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCC-cEEEEeC
Q 004255          426 HRGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVL  460 (765)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~Las~S~dg-TVhIwdl  460 (765)
                      ........+..|+|++||+++++...++ +|.+|+.
T Consensus       201 ~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          201 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence            2110113588999999999888888886 9999984

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.49  E-value=7.1e-05  Score=78.38  Aligned_cols=99  Identities=11%  Similarity=0.070  Sum_probs=60.4

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE-E-Ee
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY-K-LH  426 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~-~-l~  426 (765)
                      +.|..+|..+++... +..+...+..++|+|||+.|..+...+..|.+||+...      |.       ....+. . +.
T Consensus       162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~------g~-------~~~~~~~~~~~  227 (333)
T 2dg1_A          162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD------GV-------TIQPFGATIPY  227 (333)
T ss_dssp             EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT------SS-------SEEEEEEEEEE
T ss_pred             ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC------Cc-------CcccccceEEE
Confidence            456666665544332 22333457899999999966555443456999998431      20       001110 0 10


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      .......+..++|++||+++++...++.|.+|+.+
T Consensus       228 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          228 YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             ecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            00001357889999999988888888999999863

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.47  E-value=5.6e-06  Score=91.52  Aligned_cols=80  Identities=9%  Similarity=0.107  Sum_probs=58.5

Q ss_pred             CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE--EE
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH--LY  423 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~--l~  423 (765)
                      ..||.|.+||+.++....    +...|+|++|||+|  ++.+..||+ |++|+...       +          ..  ..
T Consensus       143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~-------~----------~~~~k~  198 (388)
T 1xip_A          143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRN-------G----------EMEKQF  198 (388)
T ss_dssp             ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEET-------T----------EEEEEE
T ss_pred             ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCC-------c----------cccccc
Confidence            468999999999887643    45689999999999  667778676 99997632       1          11  33


Q ss_pred             EEec----c---cccccEEEEEEccCCCEEEEE
Q 004255          424 KLHR----G---ITSATIQDICFSHYSQWIAIV  449 (765)
Q Consensus       424 ~l~r----G---~~~a~I~slaFSpDg~~Las~  449 (765)
                      ++-+    +   .+...|.+|.|.++++||++=
T Consensus       199 ~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          199 EFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            3411    1   123579999999999999874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.44  E-value=1.2e-05  Score=84.16  Aligned_cols=172  Identities=9%  Similarity=0.061  Sum_probs=111.8

Q ss_pred             CCEEEEEECCCCeEEEEEeCCC--CEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s--~V~sV~~s~--~~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      ++.|.+||.++|+.+.++..+.  .+.++.+.+  ++|+ +..+.|++||. +++.++++......            ..
T Consensus        14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~------------~~   79 (276)
T 3no2_A           14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC------------EM   79 (276)
T ss_dssp             CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC------------EE
T ss_pred             CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc------------cc
Confidence            3689999999999999998764  678888876  5666 66778999999 89998887752110            00


Q ss_pred             ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (765)
Q Consensus       248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~  327 (765)
                      ..+++.+                                  ++..+++                                
T Consensus        80 ~~~~~~~----------------------------------dG~~lv~--------------------------------   93 (276)
T 3no2_A           80 QTARILP----------------------------------DGNALVA--------------------------------   93 (276)
T ss_dssp             EEEEECT----------------------------------TSCEEEE--------------------------------
T ss_pred             cccEECC----------------------------------CCCEEEE--------------------------------
Confidence            1112211                                  1111110                                


Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCCcEEEEec------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~------aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~  401 (765)
                                      .....+.|..+|. +++.+.++.      .+..+...+++.++|++|++.+.++ .|.+||.. 
T Consensus        94 ----------------~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~-~v~~~d~~-  154 (276)
T 3no2_A           94 ----------------WCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS-EVREIAPN-  154 (276)
T ss_dssp             ----------------EESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT-EEEEECTT-
T ss_pred             ----------------ecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC-EEEEECCC-
Confidence                            0001233334443 344333332      2223455678899999999988755 59999963 


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                             |          ..++++..+   ....++.+.++|+.|++++.++.|..||..+
T Consensus       155 -------G----------~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t  195 (276)
T 3no2_A          155 -------G----------QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLES  195 (276)
T ss_dssp             -------S----------CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred             -------C----------CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence                   4          577887654   2356788999999999999888888887654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.40  E-value=3.7e-05  Score=83.21  Aligned_cols=58  Identities=12%  Similarity=0.082  Sum_probs=46.2

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEec
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTY  230 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~t~~~l~tl~t~  230 (765)
                      +++|.+||..+++.+.++.....- .|++++  ++|.++.           ++.|.+||+.+++.+.++...
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~  100 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP  100 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC
Confidence            368999999999999988765434 888887  6777764           346999999999988888653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.39  E-value=2.1e-05  Score=92.55  Aligned_cols=99  Identities=4%  Similarity=-0.099  Sum_probs=65.0

Q ss_pred             CCeEEEEECCC------Cc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCC---EEEEEeCCCCcccCCCCCCccccCC
Q 004255          348 AGIVVVKDFVT------RA-IISQFKAHTSPISALCFDPSGTLLVTASVYGN---NINIFRIMPSCMRSGSGNHKYDWNS  417 (765)
Q Consensus       348 dG~V~IwDl~s------~~-~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt---~IrVWdi~~~~~~~~sG~~~~~~~~  417 (765)
                      +..|.+||+.+      +. ....+..|...+.. .|+|+|..|+..+.++.   .|.+||+..       +.       
T Consensus       258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-------~~-------  322 (710)
T 2xdw_A          258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD-------PE-------  322 (710)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS-------CC-------
T ss_pred             ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC-------CC-------
Confidence            45788888876      43 45667777776665 58999998887776443   588888743       10       


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                       ......+..+.....|.+++|++++.++++...++..+||-++.
T Consensus       323 -~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          323 -ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             -GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             -cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence             00112333222223688999998888889999999776665543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.37  E-value=5.8e-05  Score=76.23  Aligned_cols=95  Identities=9%  Similarity=-0.056  Sum_probs=66.4

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      ++.|.+||............+...+..|+++++|.++++...++ .|.+||....                  ....+..
T Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~-~v~~~~~~~~------------------~~~~~~~  230 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGST------------------TSTVLPF  230 (270)
T ss_dssp             GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTS-CEEEECTTCS------------------CCEECCC
T ss_pred             CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCC-cEEEEcCCCC------------------cceeecc
Confidence            35778888776655443334446788999999998887766544 5899997421                  1111111


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      + ....+.+|+|++||+.+++.+.+++|++|++..
T Consensus       231 ~-~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          231 T-GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             C-SCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             C-CCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            1 113588999999999888989999999999875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.36  E-value=0.00011  Score=77.71  Aligned_cols=53  Identities=17%  Similarity=0.233  Sum_probs=44.2

Q ss_pred             CCCeEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255          347 NAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM  400 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~---~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~  400 (765)
                      .+..|.+||+.+++.+..+   .+|......|+|+|+|.++++.+.++ .|++|++.
T Consensus       266 ~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~-~I~~~~~~  321 (329)
T 3fvz_A          266 EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN-TVWKFTLT  321 (329)
T ss_dssp             CCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC-CEEEEEEE
T ss_pred             CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC-EEEEEeCC
Confidence            4568999999999999888   47778899999999998888777655 59999973

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.29  E-value=0.00015  Score=79.16  Aligned_cols=81  Identities=14%  Similarity=-0.038  Sum_probs=54.6

Q ss_pred             EEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEecCCcccCCCCc
Q 004255          174 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTYPVPQLAGQGA  240 (765)
Q Consensus       174 tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~  240 (765)
                      +|.+||..+++.+.++.....- .+.+++  +.|.++.           ++.|.+||+.+++...++.....+..  .  
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~--~--  122 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF--D--  122 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc--c--
Confidence            8999999999999888754333 888887  6777764           45799999999998887764201000  0  


Q ss_pred             cccccccceeEEcc--ceEEEec
Q 004255          241 VGINVGYGPMAVGP--RWLAYAS  261 (765)
Q Consensus       241 ~~~~~~~~~~Alsp--r~LAyas  261 (765)
                      .+ . ...-++++|  ++|..+.
T Consensus       123 ~g-~-~p~~~~~spDG~~l~v~n  143 (373)
T 2mad_H          123 VG-P-YSWMNANTPNNADLLFFQ  143 (373)
T ss_pred             cC-C-CccceEECCCCCEEEEEe
Confidence            00 0 012478888  7777664

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.28  E-value=0.00041  Score=71.54  Aligned_cols=92  Identities=16%  Similarity=0.102  Sum_probs=59.5

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc-eEEEEEec
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH-VHLYKLHR  427 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~-~~l~~l~r  427 (765)
                      +.|..+|.. ++ +..+..+......++|+|||++|++.+. +..|.+||+...      |.        . .....+ .
T Consensus       153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~-~~~i~~~~~~~~------g~--------~~~~~~~~-~  214 (296)
T 3e5z_A          153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTG-DNATHRYCLNAR------GE--------TEYQGVHF-T  214 (296)
T ss_dssp             CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETT-TTEEEEEEECSS------SC--------EEEEEEEE-C
T ss_pred             cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCC-CCeEEEEEECCC------Cc--------CcCCCeEe-e
Confidence            455556655 43 3445566667889999999999955554 557999998521      21        0 011222 1


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      . ....+.+|+|++||++.++.  ++.|.+|+.+
T Consensus       215 ~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          215 V-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             C-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             C-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            1 22346789999999876665  7889999864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.20  E-value=0.00047  Score=77.30  Aligned_cols=81  Identities=12%  Similarity=0.047  Sum_probs=55.9

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc---------c---ccEEEEE
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT---------S---ATIQDIC  438 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~---------~---a~I~sla  438 (765)
                      ....|.+||||++|..+......|.+||+...      +        ..+.+..+.-|-.         .   ..-+.++
T Consensus       322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~------~--------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~  387 (462)
T 2ece_A          322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNP------F--------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE  387 (462)
T ss_dssp             CCCCEEECTTSCEEEEEETTTTEEEEEECSST------T--------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEEecCC------C--------CcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence            46789999999999998887778999998531      1        1134444443311         0   0136799


Q ss_pred             EccCCCEEEEEe------------CCCcEEEE--eCCCCCC
Q 004255          439 FSHYSQWIAIVS------------SKGTCHVF--VLSPFGG  465 (765)
Q Consensus       439 FSpDg~~Las~S------------~dgTVhIw--dl~~~gg  465 (765)
                      +||||++|.++.            .+..+.++  ++++.+|
T Consensus       388 lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G  428 (462)
T 2ece_A          388 ISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG  428 (462)
T ss_dssp             ECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC
T ss_pred             EcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC
Confidence            999999999998            33345555  7788777

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.19  E-value=0.0013  Score=68.46  Aligned_cols=84  Identities=15%  Similarity=0.246  Sum_probs=55.3

Q ss_pred             CeEEEEEC--CCCc-----EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          349 GIVVVKDF--VTRA-----IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       349 G~V~IwDl--~s~~-----~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      +.|.+||+  .++.     ....+..+......|+++++|++.++... +..|.+||..+       |          +.
T Consensus       171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-~~~v~~~d~~t-------G----------~~  232 (297)
T 3g4e_A          171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-GGRVIRLDPVT-------G----------KR  232 (297)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-TTEEEEECTTT-------C----------CE
T ss_pred             CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-CCEEEEEcCCC-------c----------eE
Confidence            45555654  2332     23334444456788999999998877766 55689999753       3          34


Q ss_pred             EEEEecccccccEEEEEEc-cCCCEEEEEeCC
Q 004255          422 LYKLHRGITSATIQDICFS-HYSQWIAIVSSK  452 (765)
Q Consensus       422 l~~l~rG~~~a~I~slaFS-pDg~~Las~S~d  452 (765)
                      +..+.-.  ...+++++|+ ||++.|.+++..
T Consensus       233 ~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          233 LQTVKLP--VDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEEEECS--SSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEEEECC--CCCceEEEEeCCCCCEEEEEcCC
Confidence            5555422  2358999999 999988777754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.19  E-value=0.00066  Score=74.88  Aligned_cols=100  Identities=10%  Similarity=0.093  Sum_probs=67.5

Q ss_pred             CCCCeEEEEECCCCc--EEEEec---------c-CCCCeEEEEECCCCCEEEEEEcC---------CCEEEEEeCCCCcc
Q 004255          346 DNAGIVVVKDFVTRA--IISQFK---------A-HTSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCM  404 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~--~i~~~~---------a-H~~~IsaLaFSpdG~lLATaS~d---------Gt~IrVWdi~~~~~  404 (765)
                      ..+|.|.+.|+.++.  .+..+.         + +...+..++++|++..|..+..+         ++.|-|+|+.+   
T Consensus       244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t---  320 (386)
T 3sjl_D          244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT---  320 (386)
T ss_dssp             BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT---
T ss_pred             eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC---
Confidence            346899999997654  333222         0 12234458889999998877531         35688889866   


Q ss_pred             cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEE-eCCCcEEEEeCCCCCC
Q 004255          405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIV-SSKGTCHVFVLSPFGG  465 (765)
Q Consensus       405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~Las~-S~dgTVhIwdl~~~gg  465 (765)
                          +          +.+.++.-|   ..+++|+||+|++ +|.++ ..+++|.|+|..+..-
T Consensus       321 ----~----------kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          321 ----G----------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             ----C----------CEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             ----C----------eEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence                2          355555433   2578999999997 66665 4589999999987543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.16  E-value=0.0006  Score=76.18  Aligned_cols=116  Identities=9%  Similarity=-0.028  Sum_probs=73.5

Q ss_pred             CeEEEEEec-----CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCC
Q 004255           75 KQVLLLGYQ-----NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN  149 (765)
Q Consensus        75 ~~vL~~G~~-----~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~  149 (765)
                      +++.++...     +.+.|+|.. +.++...+.-...|  .+.+.|+.             ..|.+...... .      
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~-t~~vv~~I~vG~~P--gia~SpDg-------------k~lyVan~~~~-~------  141 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGS-TGRILGMTDGGFLP--HPVAAEDG-------------SFFAQASTVFE-R------  141 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETT-TTEEEEEEEECSSC--EEEECTTS-------------SCEEEEEEEEE-E------
T ss_pred             CEEEEECCCcCCCCCeEEEEECC-CCEEEEEEECCCCC--ceEECCCC-------------CEEEEEecccc-c------
Confidence            455655553     359999985 56666666555566  67888752             13443221000 0      


Q ss_pred             cCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--------CCEEEEEecC--CeEEEEe---CCeEEEE
Q 004255          150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--------SSVCMVRCSP--RIVAVGL---ATQIYCF  216 (765)
Q Consensus       150 ~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~--------s~V~sV~~s~--~~LaV~~---~~~I~iw  216 (765)
                            ...|.          ..+.|.++|..+++.+.++...        .....+.+++  ++|.|+.   .+.|.++
T Consensus       142 ------~~~G~----------~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVI  205 (426)
T 3c75_H          142 ------IARGK----------RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVV  205 (426)
T ss_dssp             ------TTEEE----------EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEE
T ss_pred             ------cccCC----------CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEE
Confidence                  00000          0248999999999999998764        2345677776  7777764   3579999


Q ss_pred             ECCCCceeEEEEe
Q 004255          217 DALTLENKFSVLT  229 (765)
Q Consensus       217 D~~t~~~l~tl~t  229 (765)
                      |+.+++.+.++..
T Consensus       206 D~~t~kvv~~I~v  218 (426)
T 3c75_H          206 DLEGKTFDRMLDV  218 (426)
T ss_dssp             ETTTTEEEEEEEC
T ss_pred             ECCCCeEEEEEEc
Confidence            9999998877753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.16  E-value=0.0002  Score=84.84  Aligned_cols=96  Identities=5%  Similarity=-0.048  Sum_probs=63.0

Q ss_pred             CCeEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          348 AGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       348 dG~V~IwDl~s~--~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      .+.|.+||+.++  +....+..+...+..++|+ ++.++++...+| ..+||.+...      |          ..+..+
T Consensus       340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg-~~~l~~~~~~------g----------~~~~~l  401 (741)
T 1yr2_A          340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDA-KSQVLAFDLD------G----------KPAGAV  401 (741)
T ss_dssp             TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETT-EEEEEEEETT------S----------CEEEEC
T ss_pred             CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECC-EEEEEEEeCC------C----------Cceeec
Confidence            467889998874  3444455566667778887 677888888865 4777765321      2          234444


Q ss_pred             ecccccccEEEEEEccCCCEEEEEe----CCCcEEEEeCCC
Q 004255          426 HRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSP  462 (765)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~Las~S----~dgTVhIwdl~~  462 (765)
                      .. .....|..++|+||++.|+...    ..+++.+||+..
T Consensus       402 ~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          402 SL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             BC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             cC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            31 1234688999999998766332    347899999864

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.14  E-value=0.0036  Score=66.21  Aligned_cols=68  Identities=9%  Similarity=0.103  Sum_probs=45.5

Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc-cCC
Q 004255          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HYS  443 (765)
Q Consensus       365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS-pDg  443 (765)
                      +..+......++++++|.+.++... +..|.+||..        |          ..+..+.-  ....+++++|+ +|+
T Consensus       225 ~~~~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d~~--------g----------~~~~~i~~--~~~~~~~~af~g~d~  283 (326)
T 2ghs_A          225 STGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYDTD--------G----------NHIARYEV--PGKQTTCPAFIGPDA  283 (326)
T ss_dssp             CTTSSSEEEEEEECTTSCEEEEEET-TTEEEEECTT--------C----------CEEEEEEC--SCSBEEEEEEESTTS
T ss_pred             CCCCCCCCCeeEECCCCCEEEEEeC-CCEEEEECCC--------C----------CEEEEEEC--CCCCcEEEEEecCCC
Confidence            3334445678999999998877655 3458889862        3          23444432  22359999998 999


Q ss_pred             CEEEEEeCCC
Q 004255          444 QWIAIVSSKG  453 (765)
Q Consensus       444 ~~Las~S~dg  453 (765)
                      +.|.+++.++
T Consensus       284 ~~L~vt~~~~  293 (326)
T 2ghs_A          284 SRLLVTSARE  293 (326)
T ss_dssp             CEEEEEEBCT
T ss_pred             CEEEEEecCC
Confidence            8887666544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.11  E-value=0.00015  Score=85.00  Aligned_cols=98  Identities=9%  Similarity=-0.083  Sum_probs=59.5

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d--Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      .|.+||..+++ ...|..|...+....+ ++|.++++...+  ...|.+||+..       +.        ......+..
T Consensus       253 ~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~-------~~--------~~~~~~l~~  315 (695)
T 2bkl_A          253 DVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK-------PA--------RASWKEIVP  315 (695)
T ss_dssp             EEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB-------CS--------GGGCEEEEC
T ss_pred             EEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC-------CC--------ccCCeEEec
Confidence            46666665544 3445556566666666 566655544422  35688899743       10        001122322


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      +.....|.+++|+ +++.+++...|++.+||.++..++
T Consensus       316 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  352 (695)
T 2bkl_A          316 EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK  352 (695)
T ss_dssp             CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            2223458889998 778899999999999998775443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.11  E-value=0.01  Score=59.96  Aligned_cols=92  Identities=11%  Similarity=0.031  Sum_probs=61.7

Q ss_pred             CCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          348 AGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~-~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      .+.|.+||. +++.... +..+...+..|+++++|+++++... +..|.+||. .       +.         ...+.+.
T Consensus       161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~-~-------g~---------~~~~~~~  221 (299)
T 2z2n_A          161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII-GNKIGRITT-S-------GE---------ITEFKIP  221 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T-------CC---------EEEEECS
T ss_pred             CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC-CceEEEECC-C-------Cc---------EEEEECC
Confidence            356777777 5554332 3344556889999999998776655 446899987 3       31         1222222


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                        .....+.+|++++||+..++...++.|.+|+.
T Consensus       222 --~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          222 --TPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             --STTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             --CCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence              12245899999999997776667889999987

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.06  E-value=5.1e-05  Score=83.85  Aligned_cols=89  Identities=9%  Similarity=0.100  Sum_probs=69.9

Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      .+|.|++||+.+......+..|..+|..+.+.+..  +|.++.+| .+.+||+..       +          ... .+.
T Consensus       104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG-~L~v~dl~~-------~----------~~~-~~~  162 (388)
T 1xip_A          104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVN-DLSALDLRT-------K----------STK-QLA  162 (388)
T ss_dssp             ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTS-EEEEEETTT-------C----------CEE-EEE
T ss_pred             cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCC-CEEEEEccC-------C----------ccc-ccc
Confidence            46899999998877777788888999998887653  88888866 599999964       2          122 222


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                           ..|.|++|||+|  ++.+..||++++|+....
T Consensus       163 -----~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~  192 (388)
T 1xip_A          163 -----QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG  192 (388)
T ss_dssp             -----ESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred             -----CCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence                 259999999999  788999999999977643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.05  E-value=0.0019  Score=71.26  Aligned_cols=73  Identities=12%  Similarity=0.209  Sum_probs=50.5

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----cc--------ccccEEEE
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GI--------TSATIQDI  437 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r-----G~--------~~a~I~sl  437 (765)
                      ....|+|+|+|+++++-+..++.|++||+..       |           .+..+..     |.        .-.....|
T Consensus       324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-------G-----------~v~~~~g~~~~~g~~~g~~~~~~~~~P~gi  385 (409)
T 3hrp_A          324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-------G-----------YVSTVAGQVDVASQIDGTPLEATFNYPYDI  385 (409)
T ss_dssp             SEEEEEECTTCCEEEEETTTTCEEEEEETTT-------T-----------EEEEEEECTTCBSCCCBSTTTCCBSSEEEE
T ss_pred             CCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-------C-----------EEEEEeCCCCCCCcCCCChhceEeCCceEE
Confidence            4678999999997766550467799999643       3           2222211     00        01247899


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCC
Q 004255          438 CFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       438 aFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      ++++||+.+++-..++.|+.++++
T Consensus       386 avd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          386 CYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EEcCCCCEEEEECCCCeEEEEEeC
Confidence            999999888888889999888763

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.05  E-value=0.0002  Score=84.07  Aligned_cols=96  Identities=8%  Similarity=-0.095  Sum_probs=63.9

Q ss_pred             CCeEEEEECCCCcE---EEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          348 AGIVVVKDFVTRAI---ISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       348 dG~V~IwDl~s~~~---i~~~~aH-~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      ++.|.+||+.+++.   ...+..+ ...|..++|+ ++.++++...++ ..+||.+...      |          ..+.
T Consensus       294 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg-~~~l~~~~~~------g----------~~~~  355 (695)
T 2bkl_A          294 RQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDA-TSEVRVATLK------G----------KPVR  355 (695)
T ss_dssp             TCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETT-EEEEEEEETT------C----------CEEE
T ss_pred             CCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECC-EEEEEEEeCC------C----------CeeE
Confidence            57889999887653   3333333 4568889998 778888888865 5788876321      2          2333


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEe----CCCcEEEEeCCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSP  462 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S----~dgTVhIwdl~~  462 (765)
                      .+. ......|..++|+||++.|+...    ..++|.+||+..
T Consensus       356 ~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          356 TVQ-LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             ECC-CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             Eec-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            432 11234578899999998777433    347899999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.92  E-value=0.00037  Score=74.35  Aligned_cols=57  Identities=9%  Similarity=-0.038  Sum_probs=42.1

Q ss_pred             CEEEEEECCCCeEEEEEeCCC-------CEEEEEecC--CeEEEE-----eCCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRS-------SVCMVRCSP--RIVAVG-----LATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s-------~V~sV~~s~--~~LaV~-----~~~~I~iwD~~t~~~l~tl~t  229 (765)
                      .+|.+||+++++.++++.++.       .+..|++++  ..+.++     ....|++||+.+++....+..
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence            589999999999999988752       357888874  455554     345799999998876555433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.90  E-value=0.0014  Score=77.59  Aligned_cols=98  Identities=11%  Similarity=0.088  Sum_probs=63.9

Q ss_pred             CeEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          349 GIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       349 G~V~IwDl~s~--~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG---t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      ..|.+||+.++  ++...|..+...+.... +|+|..|+..+.++   ..|.+||+..       +        . ....
T Consensus       294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~-------~--------~-~~~~  356 (741)
T 1yr2_A          294 NTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG-------S--------T-PRFD  356 (741)
T ss_dssp             CEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS-------S--------S-CEEE
T ss_pred             ceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC-------C--------c-cccE
Confidence            47889998876  31455666665555553 49999998887643   2478888743       1        0 0222


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      .+..+ ....+.+++|+ ++..+++...|++.+||.++..++
T Consensus       357 ~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  396 (741)
T 1yr2_A          357 TVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK  396 (741)
T ss_dssp             EEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred             EEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            33322 22357788888 667888889999999998765343

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.83  E-value=0.005  Score=63.96  Aligned_cols=50  Identities=8%  Similarity=-0.000  Sum_probs=40.1

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC-CeEEEEeCCeEEEEECCCCce
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGLATQIYCFDALTLEN  223 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~-~~LaV~~~~~I~iwD~~t~~~  223 (765)
                      ++|..||..+++. ..+.+...+.++++++ ..|.++..+.|++||..+++.
T Consensus        35 ~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           35 KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSA   85 (297)
T ss_dssp             TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEE
T ss_pred             CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcE
Confidence            5899999998875 5667788899999987 336666678999999988764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.81  E-value=0.0012  Score=72.38  Aligned_cols=54  Identities=9%  Similarity=-0.119  Sum_probs=44.9

Q ss_pred             EEEEEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEe
Q 004255          174 AVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       174 tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~t~~~l~tl~t  229 (765)
                      +|.++|..+++.+.++... .+  .+.+++  +.|.|+.           ++.|.+||+.|++...++..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v  114 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL  114 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            8999999999999999743 45  688887  6777764           45799999999999999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.76  E-value=0.045  Score=55.14  Aligned_cols=92  Identities=14%  Similarity=0.079  Sum_probs=57.6

Q ss_pred             CCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      .+.|.+||. +++... .+..+...+.+|+++++|+++++... +..|.+||. .       |.         ...+.+.
T Consensus       203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~-~-------g~---------~~~~~~~  263 (299)
T 2z2n_A          203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG-ANKIGRLTS-N-------NI---------IEEYPIQ  263 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEEET-T-------TE---------EEEEECS
T ss_pred             CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC-CceEEEECC-C-------Cc---------eEEEeCC
Confidence            456777777 555332 23345567899999999997776645 345899996 2       20         1222222


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .  ....+.++++ ++|++.++.+ .+.+..|+...
T Consensus       264 ~--~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          264 I--KSAEPHGICF-DGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             S--SSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred             C--CCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence            1  1245899999 9998776655 55666666653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.70  E-value=0.005  Score=72.33  Aligned_cols=94  Identities=7%  Similarity=-0.009  Sum_probs=63.8

Q ss_pred             CCeEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          348 AGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       348 dG~V~IwDl~s~~~--i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      .+.|.++|+.++..  ...|..|...+.  .|+++|..|+....++.  .|++||+..                  ....
T Consensus       304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g------------------~~~~  363 (693)
T 3iuj_A          304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG------------------KRVR  363 (693)
T ss_dssp             TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS------------------CEEE
T ss_pred             CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC------------------CeeE
Confidence            45788888887653  345667766665  89999998887776553  478888742                  1333


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCC----CcEEEEeCCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSP  462 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~d----gTVhIwdl~~  462 (765)
                      .+.-. ....+..+++++|++.|+....+    +++..||+..
T Consensus       364 ~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          364 EVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             EECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             EeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence            44321 12357788899999877766555    7888888764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.61  E-value=0.0017  Score=65.21  Aligned_cols=95  Identities=11%  Similarity=-0.006  Sum_probs=61.0

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      ++.|.+||..+.........+...+..|+++++|+++++... +..|.+||...       +           .......
T Consensus       128 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~~-------~-----------~~~~~~~  188 (270)
T 1rwi_B          128 NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD-NNRVVKLEAES-------N-----------NQVVLPF  188 (270)
T ss_dssp             GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG-GTEEEEECTTT-------C-----------CEEECCC
T ss_pred             CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC-CCEEEEEecCC-------C-----------ceEeecc
Confidence            345666665544332222233345788999999998777665 44699999743       1           1111111


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      . ....+.+|++++||+.+++...++.|.+|+...
T Consensus       189 ~-~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          189 T-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             S-SCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred             c-CCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence            1 113588999999998888777888999998653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.61  E-value=0.0062  Score=71.70  Aligned_cols=53  Identities=2%  Similarity=-0.030  Sum_probs=38.4

Q ss_pred             CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       392 t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      ..|..||+.+       |          +.++++.-+   ..+++..++.++..+++++.||++++||+.+..
T Consensus       457 g~l~A~D~~t-------G----------~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          457 GRLLAWDPVA-------Q----------KAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             EEEEEEETTT-------T----------EEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cEEEEEeCCC-------C----------cEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence            3477788755       3          466666533   234556688889999999999999999998643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.59  E-value=1.8e-05  Score=86.02  Aligned_cols=91  Identities=12%  Similarity=-0.004  Sum_probs=46.5

Q ss_pred             CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      ..+|.|..||..+|+.+-.+..+.    ...++|++..|++++.++ .|+.||..+       |          ..++++
T Consensus        99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg-~v~a~d~~t-------G----------~~~W~~  156 (369)
T 2hz6_A           99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEY-TITMYDTKT-------R----------ELRWNA  156 (369)
T ss_dssp             EEEEEEEEECCC--------------------------EEEEEEEE-EEECCCSSS-------S----------SCCCEE
T ss_pred             eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCC-EEEEEECCC-------C----------CEEEeE
Confidence            357889999999999888877664    245677888999988855 599999865       3          233333


Q ss_pred             ecccccccEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 004255          426 HRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       426 ~rG~~~a~I~slaFSpDg---~~Las~S~dgTVhIwdl~~  462 (765)
                      ..+.    ....+++.|.   ..+++++.||.++.||..+
T Consensus       157 ~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          157 TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             eccc----ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence            2111    1223445543   5677789999999999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.59  E-value=0.079  Score=53.35  Aligned_cols=91  Identities=12%  Similarity=0.088  Sum_probs=58.6

Q ss_pred             CeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       349 G~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      +.|.++|. +++... .+..+...+..|+++++|++.++... +..|.+||. .       |.         ...+.+..
T Consensus       167 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~-------g~---------~~~~~~~~  227 (300)
T 2qc5_A          167 NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM-GNKIGRITT-T-------GE---------ISEYDIPT  227 (300)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T-------CC---------EEEEECSS
T ss_pred             CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC-CCEEEEEcC-C-------Cc---------EEEEECCC
Confidence            45666666 444322 12234456889999999988776554 446888986 2       21         12222211


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                        ....+.+|+++++|+..++...++.|.+|+.
T Consensus       228 --~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          228 --PNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             --TTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             --CCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence              1235889999999997766666788999886

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.52  E-value=0.0092  Score=66.90  Aligned_cols=100  Identities=11%  Similarity=0.183  Sum_probs=70.9

Q ss_pred             CCCCeEEEEECCCCcEEEEeccCCCC--e-EEEEECCCCCEEEEEE------------------cCCCEEEEEeCCCCcc
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAHTSP--I-SALCFDPSGTLLVTAS------------------VYGNNINIFRIMPSCM  404 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH~~~--I-saLaFSpdG~lLATaS------------------~dGt~IrVWdi~~~~~  404 (765)
                      ...|.|.+.|..+.+++.++..-..+  + ..+-|+|+++.|+|+.                  ..+..|.+||+..   
T Consensus       161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~---  237 (462)
T 2ece_A          161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK---  237 (462)
T ss_dssp             CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---
T ss_pred             CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---
Confidence            34688999999999999998733222  2 2377899999999886                  3467899999954   


Q ss_pred             cCCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEe------CCCcEEEEeCCC
Q 004255          405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVS------SKGTCHVFVLSP  462 (765)
Q Consensus       405 ~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--SpDg~~Las~S------~dgTVhIwdl~~  462 (765)
                          +          +.+.++.-|.....-..|.|  +||++++.+++      .+++|.+|..+.
T Consensus       238 ----~----------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~  289 (462)
T 2ece_A          238 ----R----------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED  289 (462)
T ss_dssp             ----T----------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred             ----C----------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence                2          34555554422223445655  99999988877      567898888753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.47  E-value=0.018  Score=63.42  Aligned_cols=95  Identities=5%  Similarity=-0.085  Sum_probs=58.6

Q ss_pred             CCeEEEEECCCCcEEEE----eccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          348 AGIVVVKDFVTRAIISQ----FKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~----~~aH~~--~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      ++.|..||..++.....    ..++..  |.+.|+|+|++..|..+....+.|++|+..        |          . 
T Consensus       239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~--------g----------~-  299 (409)
T 3hrp_A          239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD--------G----------E-  299 (409)
T ss_dssp             TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT--------C----------C-
T ss_pred             CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC--------C----------C-
Confidence            56788888877653222    222222  224899999644444444446678889863        2          1 


Q ss_pred             EEEEe-c----cc--------ccccEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 004255          422 LYKLH-R----GI--------TSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS  461 (765)
Q Consensus       422 l~~l~-r----G~--------~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~  461 (765)
                      +..+. .    |.        .-.....|+|++||+++++-+ .++.|++|++.
T Consensus       300 ~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          300 CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred             EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence            11111 1    10        012378999999999888877 88999999974

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.45  E-value=0.051  Score=56.72  Aligned_cols=175  Identities=13%  Similarity=0.069  Sum_probs=113.1

Q ss_pred             CEEEEEECCCCeEEEEEeCCC--CEEEEEecCCeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s--~V~sV~~s~~~LaV~~--~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (765)
                      .+|+++|+++|+.+.++....  ....+.+..+.|.++.  ++.|.++|..|++.+.++... .|+              
T Consensus        44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--------------  108 (266)
T 2iwa_A           44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--------------  108 (266)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS--------------
T ss_pred             CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC--------------
Confidence            589999999999999998654  3345667777776655  467999999999988777532 110              


Q ss_pred             eeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (765)
Q Consensus       249 ~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~  328 (765)
                      ...+     ++-+..                             +.                                  
T Consensus       109 g~gl-----t~Dg~~-----------------------------l~----------------------------------  120 (266)
T 2iwa_A          109 GWGL-----ATDGKI-----------------------------LY----------------------------------  120 (266)
T ss_dssp             CCEE-----EECSSS-----------------------------EE----------------------------------
T ss_pred             eEEE-----EECCCE-----------------------------EE----------------------------------
Confidence            0112     111100                             00                                  


Q ss_pred             ccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc--CCC---CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCc
Q 004255          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTS---PISALCFDPSGTLLVTASVYGNNINIFRIMPSC  403 (765)
Q Consensus       329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~a--H~~---~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~  403 (765)
                                     ....+++|.++|..+.+.+..+.-  +..   .++.|.|. +|.+.+.. .....|.+.|..+  
T Consensus       121 ---------------vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~-~~~~~V~vID~~t--  181 (266)
T 2iwa_A          121 ---------------GSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI-WQTDCIARISAKD--  181 (266)
T ss_dssp             ---------------EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE-TTSSEEEEEETTT--
T ss_pred             ---------------EECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec-CCCCeEEEEECCC--
Confidence                           001256899999999988888763  212   36788888 78655554 4355799999865  


Q ss_pred             ccCCCCCCccccCCcceEEEEEec-ccc----------cccEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCC
Q 004255          404 MRSGSGNHKYDWNSSHVHLYKLHR-GIT----------SATIQDICFSHYSQWIAI-VSSKGTCHVFVLSPFG  464 (765)
Q Consensus       404 ~~~~sG~~~~~~~~s~~~l~~l~r-G~~----------~a~I~slaFSpDg~~Las-~S~dgTVhIwdl~~~g  464 (765)
                           |          +.+..+.- |..          ......|+|+||++.|.+ +-..+++.+.++.+..
T Consensus       182 -----g----------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          182 -----G----------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             -----C----------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             -----C----------cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence                 3          23344432 210          124689999999876554 5567888888887653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.44  E-value=0.04  Score=58.07  Aligned_cols=97  Identities=12%  Similarity=0.137  Sum_probs=58.6

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCC-CCccccCCcceEEEEEec
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG-NHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG-~~~~~~~~s~~~l~~l~r  427 (765)
                      +.|..+|  +++. ..+..+....+.++|+|||+.|..+...+..|.+||+...     .| ..    . ....+..+. 
T Consensus       161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-----~Gl~~----~-~~~~~~~~~-  226 (326)
T 2ghs_A          161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-----TGLPT----G-KAEVFIDST-  226 (326)
T ss_dssp             EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-----TCCBS----S-CCEEEEECT-
T ss_pred             eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-----cCCcc----c-CceEEEECC-
Confidence            3455555  4443 2333333456789999999987666654567999997410     02 10    0 001222221 


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                      + .......+++++||++.++...++.|.+|+.
T Consensus       227 ~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          227 G-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             T-SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             C-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            1 1234678999999998777767788999876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.44  E-value=0.006  Score=68.08  Aligned_cols=56  Identities=9%  Similarity=-0.129  Sum_probs=45.0

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~t~~~l~tl~t  229 (765)
                      ++|.++|+.+++.+.++.....- .|.+++  +.|.|+.           ++.|.++|..+++...++..
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v  167 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL  167 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence            58999999999999999854322 788887  6666654           35799999999999888864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.44  E-value=0.014  Score=59.71  Aligned_cols=100  Identities=9%  Similarity=0.033  Sum_probs=60.8

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEEC----CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFD----PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFS----pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      .+.|..||.. ++... +..+......++|+    |+|+.|..+...+..|.+||+...      |..     .....+.
T Consensus       152 ~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~------g~~-----~~~~~~~  218 (314)
T 1pjx_A          152 FGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP------AKI-----ENKKVWG  218 (314)
T ss_dssp             CEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET------TEE-----EEEEEEE
T ss_pred             CCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC------Ccc-----ccceEEE
Confidence            3456667765 44333 33333456889999    999766655544556999997421      200     0000111


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      .+. +.....+..++|++||+++++...++.|.+|+..
T Consensus       219 ~~~-~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          219 HIP-GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             ECC-CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             ECC-CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence            221 1110347889999999988888888999999865

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.43  E-value=0.029  Score=58.25  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=43.3

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S  450 (765)
                      ....|+++++|++.++. . + .|.+|+..        |          ..+..+...   ..+.+++|++|++.|.+++
T Consensus       240 ~pdgi~~d~~G~lwv~~-~-~-gv~~~~~~--------g----------~~~~~~~~~---~~~~~~~f~~d~~~L~it~  295 (305)
T 3dr2_A          240 LPDGFCVDRGGWLWSSS-G-T-GVCVFDSD--------G----------QLLGHIPTP---GTASNCTFDQAQQRLFITG  295 (305)
T ss_dssp             CCCSEEECTTSCEEECC-S-S-EEEEECTT--------S----------CEEEEEECS---SCCCEEEECTTSCEEEEEE
T ss_pred             CCCeEEECCCCCEEEec-C-C-cEEEECCC--------C----------CEEEEEECC---CceeEEEEeCCCCEEEEEc
Confidence            34568999999976654 3 3 38899862        3          344444322   2478899999999999988


Q ss_pred             CCCcEEE
Q 004255          451 SKGTCHV  457 (765)
Q Consensus       451 ~dgTVhI  457 (765)
                      .++..++
T Consensus       296 ~~~l~~~  302 (305)
T 3dr2_A          296 GPCLWML  302 (305)
T ss_dssp             TTEEEEE
T ss_pred             CCeEEEE
Confidence            8754433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.38  E-value=0.00053  Score=75.61  Aligned_cols=98  Identities=10%  Similarity=0.024  Sum_probs=72.9

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCc
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSS  418 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~---------dGt~IrVWdi~~~~~~~~sG~~~~~~~~s  418 (765)
                      ++.|.+.|..+++.+.++..-..| . |+|||||++|..++.         ++..|.+||..+.                
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~----------------  119 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL----------------  119 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC----------------
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC----------------
Confidence            579999999999999999876667 4 999999999887762         2346999998652                


Q ss_pred             ceEEEEEeccc-----ccccEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCC
Q 004255          419 HVHLYKLHRGI-----TSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPFG  464 (765)
Q Consensus       419 ~~~l~~l~rG~-----~~a~I~slaFSpDg~~Las~S~--dgTVhIwdl~~~g  464 (765)
                       ..+.++.-+.     ....-..++|+|||++|.++..  +++|.|+|+.+..
T Consensus       120 -~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~  171 (386)
T 3sjl_D          120 -LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA  171 (386)
T ss_dssp             -CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             -eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence             2344442211     0112345899999999998874  6899999998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.33  E-value=0.17  Score=50.88  Aligned_cols=89  Identities=13%  Similarity=0.065  Sum_probs=54.4

Q ss_pred             CeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       349 G~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      +.|.+||. +++... .+..+...+.+|+++++|++.++... +..|.+||..        |.         ...+.+..
T Consensus       209 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~~--------g~---------~~~~~~~~  269 (300)
T 2qc5_A          209 NKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG-ANQIGRITND--------NT---------IQEYQLQT  269 (300)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEECTT--------SC---------EEEEECCS
T ss_pred             CEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC-CCeEEEECCC--------Cc---------EEEEECCc
Confidence            45666666 343322 23345567889999999997776544 3458889862        21         12222221


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                        ....+.+|++++||+..++.. . .|..|+.
T Consensus       270 --~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          270 --ENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             --TTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             --cCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence              123578899999998665544 4 6666654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.26  E-value=0.035  Score=57.89  Aligned_cols=57  Identities=7%  Similarity=-0.073  Sum_probs=45.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEE--EEEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~--sV~~s~~~LaV~~--~~~I~iwD~~t~~~l~tl~t  229 (765)
                      ..|+.+|+++|+.+.++......+  .|....+.|-+..  ++.+.+||..|++.+.++..
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~  125 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY  125 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEEC
Confidence            489999999999999999877654  4666666665554  56899999999998887763

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.22  E-value=0.035  Score=58.02  Aligned_cols=56  Identities=5%  Similarity=-0.034  Sum_probs=44.6

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEE--EEEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~--sV~~s~~~LaV~~--~~~I~iwD~~t~~~l~tl~t  229 (765)
                      +.|+.+|+++|+.+.++ ++...+  .+.+..+.|-+..  ++.+.+||+.|++.+.++..
T Consensus        75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            46999999999999999 776654  4777776665554  56899999999998888763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.17  E-value=0.0031  Score=68.73  Aligned_cols=94  Identities=11%  Similarity=-0.014  Sum_probs=68.5

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~---------dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~  420 (765)
                      +|.++|..+++.+.++..-..+  .++|||||++|..+..         ++..|.+||+.+.                 .
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~-----------------~  108 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-----------------L  108 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC-----------------c
Confidence            8999999999999998866556  8999999999998863         2456899998542                 2


Q ss_pred             EEEEEecc-----cccccEEEEEEccCCCEEEEEeC--CCcEEEEeCCCC
Q 004255          421 HLYKLHRG-----ITSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPF  463 (765)
Q Consensus       421 ~l~~l~rG-----~~~a~I~slaFSpDg~~Las~S~--dgTVhIwdl~~~  463 (765)
                      .+.++.-+     .+...-..++|||||++|.+++.  +++|.++| ...
T Consensus       109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~  157 (373)
T 2mad_H          109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG  157 (373)
T ss_pred             EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence            23322211     00012357999999999999874  47899999 653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.08  E-value=0.0014  Score=71.67  Aligned_cols=94  Identities=10%  Similarity=-0.060  Sum_probs=70.8

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE---------cCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---------VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS---------~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~  420 (765)
                      .|.|.|..+++.+.+|..-..|  .++|+|||++|..+.         .++..|.+||+.+       +          +
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-------~----------~  107 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------F----------L  107 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------C----------C
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------C----------C
Confidence            8999999999999999866667  799999999999887         2356799999976       2          3


Q ss_pred             EEEEEecc-cc----cccEEEEEEccCCCEEEEEeC--CCcEEE--EeCCC
Q 004255          421 HLYKLHRG-IT----SATIQDICFSHYSQWIAIVSS--KGTCHV--FVLSP  462 (765)
Q Consensus       421 ~l~~l~rG-~~----~a~I~slaFSpDg~~Las~S~--dgTVhI--wdl~~  462 (765)
                      .+.++.-| ..    ...-..++|||||++|.++..  ..++.+  +|+.+
T Consensus       108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            45555322 00    011245899999999999874  467888  88865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.05  E-value=0.43  Score=50.47  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255          345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (765)
Q Consensus       345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~  424 (765)
                      +..+|.+..+|..+++.+-....  .....+..+  +..|..++.+|. +..+|..+       |          ..+++
T Consensus       245 ~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~-l~~~d~~t-------G----------~~~w~  302 (376)
T 3q7m_A          245 LAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDR-VMALTIDG-------G----------VTLWT  302 (376)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCC-EEEEETTT-------C----------CEEEE
T ss_pred             EecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCe-EEEEECCC-------C----------cEEEe
Confidence            34678999999999988766543  334445443  556666777565 88999865       4          35555


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .... ....+.....  .+..|.+++.+|.+++||..+
T Consensus       303 ~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          303 QSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             ECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             eccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence            4311 1111222222  256788999999999999875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.04  E-value=0.036  Score=64.94  Aligned_cols=94  Identities=12%  Similarity=0.072  Sum_probs=56.3

Q ss_pred             CCeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          348 AGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       348 dG~V~IwDl~s~~-~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG---t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      ...|.++|+.++. ....|..+....... |+++|..|+-.+.++   ..|.++|+..       +.        .....
T Consensus       258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~-------~~--------~~~~~  321 (693)
T 3iuj_A          258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN-------PG--------PAHWR  321 (693)
T ss_dssp             CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS-------CC--------GGGCE
T ss_pred             CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC-------CC--------ccccE
Confidence            3578899987764 455666676666555 667766665444332   3577778743       10        00112


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCC---cEEEEeCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLS  461 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dg---TVhIwdl~  461 (765)
                      .+... ....+   .|++++++|+....++   .|++|++.
T Consensus       322 ~l~~~-~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          322 DLIPE-RQQVL---TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             EEECC-CSSCE---EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             EEecC-CCCEE---EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            33222 22223   8999999988877655   57777775

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.00  E-value=0.13  Score=52.86  Aligned_cols=57  Identities=9%  Similarity=-0.006  Sum_probs=44.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCE--EEEEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSV--CMVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V--~sV~~s~~~LaV~~--~~~I~iwD~~t~~~l~tl~t  229 (765)
                      ..|+.+|+++|+.+.++..+...  ..+.+..+.|-+..  ++.+++||..|++.+.++..
T Consensus        43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~  103 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY  103 (243)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence            48999999999999999987765  34555566555544  56799999999998887753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.97  E-value=0.31  Score=50.33  Aligned_cols=92  Identities=13%  Similarity=0.037  Sum_probs=55.5

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-----CEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-----t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      +.|..+|..+++.....  +....+.++|+|||+.|..+....     ..|.+||+...      +         .....
T Consensus       169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~------~---------l~~~~  231 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG------A---------LHDRR  231 (305)
T ss_dssp             EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT------E---------EEEEE
T ss_pred             CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC------C---------ccCCe
Confidence            56777787666543333  334567899999999888777642     56999997431      0         00111


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                      .+... .......+++++||++. +++.+| |++|+.
T Consensus       232 ~~~~~-~~~~pdgi~~d~~G~lw-v~~~~g-v~~~~~  265 (305)
T 3dr2_A          232 HFASV-PDGLPDGFCVDRGGWLW-SSSGTG-VCVFDS  265 (305)
T ss_dssp             EEECC-SSSCCCSEEECTTSCEE-ECCSSE-EEEECT
T ss_pred             EEEEC-CCCCCCeEEECCCCCEE-EecCCc-EEEECC
Confidence            11110 11234568999999944 444454 888875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.94  E-value=0.044  Score=64.59  Aligned_cols=41  Identities=7%  Similarity=-0.019  Sum_probs=29.8

Q ss_pred             eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      +.++++..+.   .+..-.++..+..|++++.||+++.||..+.
T Consensus       466 ~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG  506 (689)
T 1yiq_A          466 QAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTG  506 (689)
T ss_dssp             EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             CeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCC
Confidence            4566654332   2333467778889999999999999999873

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.93  E-value=0.095  Score=60.62  Aligned_cols=220  Identities=11%  Similarity=0.046  Sum_probs=126.3

Q ss_pred             CEEEEEECCCCeEEEEEeCC--CCEEEEEe-c-C--CeEEEEe-------------------CCeEEEEECCCCceeEEE
Q 004255          173 TAVRFYSFQSHCYEHVLRFR--SSVCMVRC-S-P--RIVAVGL-------------------ATQIYCFDALTLENKFSV  227 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~--s~V~sV~~-s-~--~~LaV~~-------------------~~~I~iwD~~t~~~l~tl  227 (765)
                      ++|.+.|+++.+++..++.+  .....+++ + |  ++|.++.                   ++.+.+.|..+++..+++
T Consensus       112 ~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI  191 (595)
T 1fwx_A          112 TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV  191 (595)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEE
Confidence            68999999999999977654  46778886 3 3  6777763                   125899999999999988


Q ss_pred             EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255          228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (765)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l  305 (765)
                      ....+|+              -++++|  +|+..++.+.-   .+.. .+..+        ...-+. +.-..+.   ..
T Consensus       192 ~Vgg~pd--------------~~~~spdGk~~~vt~~~se---~~~~-i~~~~--------~~~~d~-v~V~~~~---~~  241 (595)
T 1fwx_A          192 LVSGNLD--------------NCDADYEGKWAFSTSYNSE---KGMT-LPEMT--------AAEMDH-IVVFNIA---EI  241 (595)
T ss_dssp             EESSCCC--------------CEEECSSSSEEEEEESCTT---CCSS-HHHHT--------CCSEEE-EEEEEHH---HH
T ss_pred             EeCCCcc--------------ceEECCCCCEEEEEecCcc---cCcc-hhhcc--------ccccce-EEEeecc---ce
Confidence            7533442              366777  66666553310   0000 00000        000000 0000000   00


Q ss_pred             hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCC--CcE-EEEeccCCCCeEEEEECCCCC
Q 004255          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAI-ISQFKAHTSPISALCFDPSGT  382 (765)
Q Consensus       306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s--~~~-i~~~~aH~~~IsaLaFSpdG~  382 (765)
                      ..            ..++           ++.        ..-+.|.|.|..+  ++. +..+..-. ...++.|+|||+
T Consensus       242 ~~------------~v~~-----------Gk~--------~~i~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk  289 (595)
T 1fwx_A          242 EK------------AIAA-----------GDY--------QELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKK  289 (595)
T ss_dssp             HH------------HHHH-----------TCS--------EEETTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSS
T ss_pred             eE------------eccC-----------CCe--------eEECcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCC
Confidence            00            0000           110        0114599999998  555 56665332 235789999999


Q ss_pred             EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       383 lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      +++.++.....|.|+|+...... ..|.    +......+.++.-|.   .-..++|+|||....+.-.|++|-+|++..
T Consensus       290 ~v~V~~~~s~~VsVid~~~~~~~-~~~~----l~~~~~v~~~v~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          290 HLCVAGKLSPTVTVLDVTRFDAV-FYEN----ADPRSAVVAEPELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEEECTTSSBEEEEEGGGHHHH-HHSC----CCGGGGEEECCBCCS---CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEEEeCCCCCeEEEEECcccccc-cccc----cCcccceEEEcCCCC---CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            99998887778999998641000 0000    001112333444342   357899999994445566799999999976

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.92  E-value=0.04  Score=64.80  Aligned_cols=58  Identities=17%  Similarity=0.057  Sum_probs=42.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCCC-----------E-EEEEecCCeEEEE-eCCeEEEEECCCCceeEEEEec
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLTY  230 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~-----------V-~sV~~s~~~LaV~-~~~~I~iwD~~t~~~l~tl~t~  230 (765)
                      +.|.-+|.++|+.+.+++....           + ..+.+....|.++ .++.|+.+|+.|++.+++....
T Consensus        87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~  157 (677)
T 1kb0_A           87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTF  157 (677)
T ss_dssp             GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETT
T ss_pred             CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCC
Confidence            5788999999999998876431           1 2344455556655 4678999999999999887643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.92  E-value=0.14  Score=54.24  Aligned_cols=89  Identities=10%  Similarity=0.043  Sum_probs=51.8

Q ss_pred             CCCeEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          347 NAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      .+|.|..+|..+++.+-.... ....+....+  .+..|..++.+| .+.+||..+       |          +.+++.
T Consensus       285 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g-~l~~~d~~t-------G----------~~~~~~  344 (376)
T 3q7m_A          285 QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEG-YLHWINVED-------G----------RFVAQQ  344 (376)
T ss_dssp             TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTS-EEEEEETTT-------C----------CEEEEE
T ss_pred             CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCC-eEEEEECCC-------C----------cEEEEE
Confidence            356777888888877665542 1122222233  245677777756 589999865       4          355554


Q ss_pred             ecccccccEE-EEEEccCCCEEEEEeCCCcEEEEe
Q 004255          426 HRGITSATIQ-DICFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       426 ~rG~~~a~I~-slaFSpDg~~Las~S~dgTVhIwd  459 (765)
                      .-..  ..+. ....  .+..|.+++.+|+++.|+
T Consensus       345 ~~~~--~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          345 KVDS--SGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ECCT--TCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             ecCC--CcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            3211  1111 1112  245788899999999987

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.91  E-value=0.051  Score=57.58  Aligned_cols=79  Identities=8%  Similarity=0.119  Sum_probs=48.3

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc-ceEEEEE-ecccccccEEEEEEccCCCEEEE
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS-HVHLYKL-HRGITSATIQDICFSHYSQWIAI  448 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s-~~~l~~l-~rG~~~a~I~slaFSpDg~~Las  448 (765)
                      .++.|+|+|||+.|..++..++  +||.+.......  +...   ... ...+..+ .+|    ....+++++||+.+++
T Consensus       196 ~~~gia~s~dg~~ly~~~~~~~--~l~~~~~~~~~~--~~~~---~~~~~~~~~~~g~~g----~pdgia~d~~G~l~va  264 (343)
T 2qe8_A          196 GVNGIVLDAENEWLYLSPMHST--SMYRIKSADLSN--LQLT---DAELGSKIERYSEKP----ICDGISIDKDHNIYVG  264 (343)
T ss_dssp             CEEEEEECTTSCEEEEEESSCS--EEEEEEHHHHTC--TTCC---HHHHHTTCEEEEECC----SCSCEEECTTCCEEEE
T ss_pred             ccceeEeccCCCEEEEEeCCCC--eEEEEEHHHhcC--CCCC---hhhhhcceEecccCC----CCceEEECCCCCEEEE
Confidence            3678999999999999888776  445442210000  0000   000 0000111 122    2346999999999999


Q ss_pred             EeCCCcEEEEeC
Q 004255          449 VSSKGTCHVFVL  460 (765)
Q Consensus       449 ~S~dgTVhIwdl  460 (765)
                      ...++.|.+||.
T Consensus       265 ~~~~~~V~~~d~  276 (343)
T 2qe8_A          265 DLAHSAIGVITS  276 (343)
T ss_dssp             EGGGTEEEEEET
T ss_pred             ccCCCeEEEEEC
Confidence            999999999997

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.84  E-value=0.17  Score=52.64  Aligned_cols=57  Identities=4%  Similarity=-0.007  Sum_probs=48.1

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                      +++.+||.++.+.+.++.....=+.++...+.|.++. .++|+++|..|++.+.++..
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             CEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence            6899999999999999998766577778887777765 45799999999998888763

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.81  E-value=0.37  Score=50.16  Aligned_cols=57  Identities=9%  Similarity=-0.032  Sum_probs=46.2

Q ss_pred             CEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                      ++|.++|.++++.+.++.+. ..-+.+..+.+.|.++. .++|+++|..|++.+.++..
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence            68999999999999999876 44466777777666654 45799999999998888763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.76  E-value=0.068  Score=62.95  Aligned_cols=57  Identities=23%  Similarity=0.078  Sum_probs=41.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCCC-----------E-EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~-----------V-~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                      +.|.-+|.++|+.+..++....           + ..+......|.++. ++.|+.+|+.|++.+++...
T Consensus        80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~  149 (689)
T 1yiq_A           80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT  149 (689)
T ss_dssp             GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence            4788999999999998865421           1 12333455566554 67899999999999988764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.74  E-value=0.13  Score=53.70  Aligned_cols=57  Identities=9%  Similarity=-0.128  Sum_probs=48.8

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                      +++.+||.++.+.+.++.+...-+.++...+.|.++. .++|+++|..|++.+.++..
T Consensus       116 ~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          116 GLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            6899999999999999998766678888888777765 56899999999998888864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.58  E-value=0.13  Score=52.82  Aligned_cols=91  Identities=14%  Similarity=0.121  Sum_probs=53.5

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      |.+..+|. +++.+..+......+.++.++++|.+.+ ++.+|. +..||. .       |          ..++.+.-+
T Consensus       235 ~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~gg-l~~~d~-~-------g----------~~~~~~~~~  293 (330)
T 3hxj_A          235 GHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYDGH-LYAINP-D-------G----------TEKWNFETG  293 (330)
T ss_dssp             TEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-ECTTCE-EEEECT-T-------S----------CEEEEEECS
T ss_pred             CeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ecCCCC-EEEECC-C-------C----------cEEEEEEcC
Confidence            44555553 3444444544444455567788887654 555454 777884 2       3          344444322


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                        ...+.++.+.+||+ |..++.+|.+++......
T Consensus       294 --~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          294 --SWIIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             --SCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             --CccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence              23467788888887 556899999999887653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.47  E-value=0.9  Score=46.67  Aligned_cols=57  Identities=12%  Similarity=0.046  Sum_probs=48.2

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                      +++.+||.++.+.+.++.+...-+.++...+.|.++. .++|+++|..|++.+.++..
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            6899999999999999998776678887787777664 45799999999998888864

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.42  E-value=0.00078  Score=73.09  Aligned_cols=93  Identities=10%  Similarity=0.090  Sum_probs=41.5

Q ss_pred             CCCCeEEEEECCCCcEEEEeccCCCC-eE-EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAHTSP-IS-ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY  423 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH~~~-Is-aLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~  423 (765)
                      ..||.|..||..+++.+..++.+... +. +.++. ++..|++++.+| .+..||..+       |          ..++
T Consensus        56 s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg-~v~a~D~~t-------G----------~~~w  116 (369)
T 2hz6_A           56 PNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQD-IWYVIDLLT-------G----------EKQQ  116 (369)
T ss_dssp             TTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEE-EEEEECCC-----------------------
T ss_pred             CCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCC-EEEEEECCC-------C----------cEEE
Confidence            35788899998888776555443211 10 11112 344666777755 599999865       4          3455


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       424 ~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ++..+.      ...++|++..|++++.|++++.||..+.
T Consensus       117 ~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A          117 TLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             ----------------------EEEEEEEEEEECCCSSSS
T ss_pred             EecCCC------cccccccCCEEEEEecCCEEEEEECCCC
Confidence            554221      2456789999999999999999998753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.40  E-value=0.15  Score=59.64  Aligned_cols=57  Identities=21%  Similarity=-0.021  Sum_probs=41.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCCC-----------E-EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~-----------V-~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t  229 (765)
                      +.|.-+|.++|+.+.+++....           + ..+.+....|.++. ++.|+.+|+.|++.+++...
T Consensus        76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~  145 (668)
T 1kv9_A           76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (668)
T ss_dssp             GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence            5788999999999998865421           1 12333445555554 67899999999999988764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.20  E-value=0.27  Score=56.46  Aligned_cols=26  Identities=4%  Similarity=-0.139  Sum_probs=20.1

Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          438 CFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       438 aFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      .+...+..|..++.||+++.||..+.
T Consensus       470 ~~~t~gg~v~~g~~dg~l~a~D~~tG  495 (571)
T 2ad6_A          470 TLYTKGGLVWYATLDGYLKALDNKDG  495 (571)
T ss_dssp             CEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             eEEECCCEEEEEcCCCeEEEEECCCC
Confidence            34445677888999999999998763

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.62  E-value=0.21  Score=57.67  Aligned_cols=98  Identities=14%  Similarity=0.136  Sum_probs=57.0

Q ss_pred             cCCCCeEEEEECCCCc------------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255          345 MDNAGIVVVKDFVTRA------------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK  412 (765)
Q Consensus       345 ~~~dG~V~IwDl~s~~------------~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~  412 (765)
                      ...+.+|.++|+.+.+            .+.++..-.+ -..++|+|+| .+.+...-+..|-+||+.... +...|.  
T Consensus       295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g-P~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~-~~~~g~--  369 (595)
T 1fwx_A          295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAI-RAYAGE--  369 (595)
T ss_dssp             CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC-EEEEEECTTS-EEEEEETTTTEEEEEEHHHHH-HHHHTC--
T ss_pred             CCCCCeEEEEECcccccccccccCcccceEEEcCCCCC-cceEEECCCC-eEEEEEecCCcEEEEEhhHhh-hhhccc--
Confidence            3456788899988652            4555554434 4678999999 676666667789999985410 000000  


Q ss_pred             cccCCcceEEEEEecccccccE---EEEEEccCCCEEEEEeC
Q 004255          413 YDWNSSHVHLYKLHRGITSATI---QDICFSHYSQWIAIVSS  451 (765)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~a~I---~slaFSpDg~~Las~S~  451 (765)
                          .....+.++.-+......   ..+.++|||+||.++..
T Consensus       370 ----~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          370 ----KVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             ----SCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             ----ccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence                001244455433221111   12356899999988853

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.51  E-value=2.1  Score=46.41  Aligned_cols=101  Identities=12%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             CCCeEEEEEC-------CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255          347 NAGIVVVKDF-------VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (765)
Q Consensus       347 ~dG~V~IwDl-------~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~  419 (765)
                      .+|.+..|++       .+.+.+.+|.-- +.+-.+..++....|..+-++ .-|..++..+.  ...          ..
T Consensus       151 k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~--~~~----------~~  216 (355)
T 3amr_A          151 KEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPD--GGS----------NG  216 (355)
T ss_dssp             SSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-TEEEEEECSTT--SCS----------CC
T ss_pred             CCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcC--CCC----------Cc
Confidence            3466666666       233567777653 467788999988888888884 44666665442  100          11


Q ss_pred             eEEEEEecccccccEEEEEE--ccCCC-EEEEEe-CCCcEEEEeCC
Q 004255          420 VHLYKLHRGITSATIQDICF--SHYSQ-WIAIVS-SKGTCHVFVLS  461 (765)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaF--SpDg~-~Las~S-~dgTVhIwdl~  461 (765)
                      +.+..+..+.-.+.+-.|++  .+|++ ||++++ .+.+.+|||..
T Consensus       217 ~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          217 TVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            33333322333346888888  67777 777776 67799999996

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.21  E-value=0.78  Score=53.66  Aligned_cols=40  Identities=10%  Similarity=0.073  Sum_probs=28.0

Q ss_pred             eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      +.+++...+.   .+....+...+..|++++.|+.+++||..+
T Consensus       449 ~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          449 KAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             cEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence            4555554332   233345666788999999999999999875

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=94.69  E-value=3.9  Score=40.85  Aligned_cols=71  Identities=10%  Similarity=0.008  Sum_probs=44.1

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 004255          370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV  449 (765)
Q Consensus       370 ~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~  449 (765)
                      ..-..|+|+|++..|..+....+.|.++|...                  ..+..+..+.  ..-..|++.  +.+|..+
T Consensus       167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g------------------~~~~~~~~~~--~~P~gi~~d--~~~lyva  224 (267)
T 1npe_A          167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ------------------PGRRKVLEGL--QYPFAVTSY--GKNLYYT  224 (267)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTE------------------EEEEEEEECC--CSEEEEEEE--TTEEEEE
T ss_pred             CCCcEEEEcCCCCEEEEEECCCCEEEEEecCC------------------CceEEEecCC--CCceEEEEe--CCEEEEE
Confidence            34678999999888877777667899999742                  1222222221  123566654  4555555


Q ss_pred             e-CCCcEEEEeCCC
Q 004255          450 S-SKGTCHVFVLSP  462 (765)
Q Consensus       450 S-~dgTVhIwdl~~  462 (765)
                      . ..+.|.++|...
T Consensus       225 ~~~~~~v~~~d~~~  238 (267)
T 1npe_A          225 DWKTNSVIAMDLAI  238 (267)
T ss_dssp             ETTTTEEEEEETTT
T ss_pred             ECCCCeEEEEeCCC
Confidence            4 567888888764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.16  E-value=3.9  Score=46.75  Aligned_cols=58  Identities=12%  Similarity=0.065  Sum_probs=40.7

Q ss_pred             CEEEEEECCCCeEEEEEeCCC-----CEE-EEEecCCeEEEEe-------CCeEEEEECCCCceeEEEEec
Q 004255          173 TAVRFYSFQSHCYEHVLRFRS-----SVC-MVRCSPRIVAVGL-------ATQIYCFDALTLENKFSVLTY  230 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s-----~V~-sV~~s~~~LaV~~-------~~~I~iwD~~t~~~l~tl~t~  230 (765)
                      +.|.-+|.++|+.+...+...     .+. +-.+....|.++.       ++.|+.||+.|++.+++....
T Consensus       125 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  195 (571)
T 2ad6_A          125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             CEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence            689999999999998876543     221 1111234555544       468999999999999988753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.08  E-value=2.5  Score=48.84  Aligned_cols=59  Identities=15%  Similarity=0.046  Sum_probs=42.3

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCE-----------------------------------------EEEEecCCeEEEEeC
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSV-----------------------------------------CMVRCSPRIVAVGLA  210 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V-----------------------------------------~sV~~s~~~LaV~~~  210 (765)
                      ++.|+-+|.++|+++..+....+.                                         .++.....+|.++..
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            468999999999999888654321                                         122333456666654


Q ss_pred             C-----------------eEEEEECCCCceeEEEEec
Q 004255          211 T-----------------QIYCFDALTLENKFSVLTY  230 (765)
Q Consensus       211 ~-----------------~I~iwD~~t~~~l~tl~t~  230 (765)
                      +                 .|+.+|+.|++.++.....
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~  297 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT  297 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence            3                 7999999999999888753

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.70  E-value=11  Score=42.15  Aligned_cols=198  Identities=12%  Similarity=0.123  Sum_probs=112.3

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEE-ecCCeEEEEeCCeEEEEECCCCc-eeEEEEecCCcccCCCCcccccccccee
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVR-CSPRIVAVGLATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~-~s~~~LaV~~~~~I~iwD~~t~~-~l~tl~t~p~p~~~~~~~~~~~~~~~~~  250 (765)
                      ++++++|+.+.+.++...++..|.-=+ ++++.|+...+..||-|++.... ..+...-|++-                 
T Consensus        86 ~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L-----------------  148 (494)
T 1bpo_A           86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSL-----------------  148 (494)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGG-----------------
T ss_pred             CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhc-----------------
Confidence            699999999999999999988764333 57899999889999999986522 22222223220                 


Q ss_pred             EEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCcc
Q 004255          251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS  330 (765)
Q Consensus       251 Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s  330 (765)
                      + +...+-|..+....       |                             -+.-|+.                    
T Consensus       149 ~-~~QIInY~~d~~~k-------W-----------------------------~~l~GI~--------------------  171 (494)
T 1bpo_A          149 A-GCQIINYRTDAKQK-------W-----------------------------LLLTGIS--------------------  171 (494)
T ss_dssp             T-TCEEEEEEECTTSS-------E-----------------------------EEEEEEE--------------------
T ss_pred             c-cceEEEEEECCCCC-------e-----------------------------EEEEeec--------------------
Confidence            0 11333343221000       0                             0000110                    


Q ss_pred             CCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC---CCEEEEEEc--CCCEEEEEeCCCCccc
Q 004255          331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS---GTLLVTASV--YGNNINIFRIMPSCMR  405 (765)
Q Consensus       331 ~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpd---G~lLATaS~--dGt~IrVWdi~~~~~~  405 (765)
                                 ...+.-.|.+.+|..+.+ .-..+.||...-..+.+.-+   .++++.|..  .|..++|-++..... 
T Consensus       172 -----------~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~-  238 (494)
T 1bpo_A          172 -----------AQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT-  238 (494)
T ss_dssp             -----------EETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT-
T ss_pred             -----------ccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc-
Confidence                       001123578899988754 44668888554433333211   135555554  356799999843100 


Q ss_pred             CCCCCCccccCCcceEEEEEeccc--ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          406 SGSGNHKYDWNSSHVHLYKLHRGI--TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       406 ~~sG~~~~~~~~s~~~l~~l~rG~--~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                         |..     .-..+..++..-.  ...--.++..|+.-..+..-+.-|.+|+||+.+...
T Consensus       239 ---~~~-----~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          239 ---GNQ-----PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             ---TCC-----CCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             ---CCC-----CccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence               110     0012222322110  111234688888888999999999999999997543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.42  E-value=2  Score=49.82  Aligned_cols=50  Identities=8%  Similarity=0.077  Sum_probs=31.4

Q ss_pred             CEEEEEECCCCeEEEEEeCCC---CEEEEEe-cCCeEEEEeC-------CeEEEEECCCCc
Q 004255          173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRC-SPRIVAVGLA-------TQIYCFDALTLE  222 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s---~V~sV~~-s~~~LaV~~~-------~~I~iwD~~t~~  222 (765)
                      ..+.+||..+++-...-..+.   .-.++.+ +.+++++|..       ..+.+||..+.+
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            369999999886544322222   2234445 6677777652       358999987764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=93.33  E-value=1.7  Score=49.96  Aligned_cols=85  Identities=20%  Similarity=0.352  Sum_probs=54.3

Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      .+|.|.-||+.+++.+-+++.+. ++..-.+...|.+++.++.|| .++.||.++       |          +.+++++
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg-~l~A~D~~t-------G----------~~lW~~~  524 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDG-YFKAFDAKS-------G----------KELWKFQ  524 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTS-EEEEEETTT-------C----------CEEEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCC-cEEEEECCC-------C----------CEEEEec
Confidence            46899999999999877765432 222212223466787888866 599999866       5          5788776


Q ss_pred             cccccccEEEEEEccCCC-EEEEEeC
Q 004255          427 RGITSATIQDICFSHYSQ-WIAIVSS  451 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~-~Las~S~  451 (765)
                      -+.. ..-.-+.|..||+ |+++.+-
T Consensus       525 ~~~g-~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          525 TGSG-IVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             CSSC-CCSCCEEEEETTEEEEEEEEC
T ss_pred             CCCC-cccCceEEEECCEEEEEEEcc
Confidence            4321 0112266778886 5655543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.09  E-value=23  Score=44.13  Aligned_cols=95  Identities=9%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             CeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       349 G~V~IwDl~s~~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      ..|+|||+...+.+. .-..+. .|..+...-.|.+++.|+.... |.++..+..      .          ..+..+.|
T Consensus       904 ~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~------~----------~~L~~~a~  965 (1158)
T 3ei3_A          904 STVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRS-VLLLAYKPM------E----------GNFEEIAR  965 (1158)
T ss_dssp             TEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBC-EEEEEEETT------T----------TEEEEEEE
T ss_pred             CEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhhe-EEEEEEEcC------C----------CeEEEEEe
Confidence            467778876554332 111121 2334444446788888887544 555443221      0          36667766


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .....+++++.|=.++ .++.+..+|.++++..++
T Consensus       966 D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          966 DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            6666679999997665 667789999999999876

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=92.97  E-value=9.4  Score=39.26  Aligned_cols=72  Identities=14%  Similarity=0.071  Sum_probs=42.0

Q ss_pred             eEEEEECCCCCEEEEEEcC---------CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe--cccccccEEEEEEc
Q 004255          372 ISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH--RGITSATIQDICFS  440 (765)
Q Consensus       372 IsaLaFSpdG~lLATaS~d---------Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~--rG~~~a~I~slaFS  440 (765)
                      ...|+++++|++.++....         ...|.++|-.        |          ..+..+.  .|.....+.++++ 
T Consensus       231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--------G----------~~~~~~~~~~g~~~~~~~~~~~-  291 (322)
T 2fp8_A          231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--------G----------NILEVIPLPPPFAGEHFEQIQE-  291 (322)
T ss_dssp             EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--------S----------CEEEEEECCTTTTTSCCCEEEE-
T ss_pred             CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--------C----------CEEEEEECCCCCccccceEEEE-
Confidence            5679999999987765431         1235555531        3          2333332  2321234667777 


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCC
Q 004255          441 HYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       441 pDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .+++..++....+.|.+|++..
T Consensus       292 ~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          292 HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             ETTEEEEECSSCSEEEEEEC--
T ss_pred             eCCEEEEeecCCCceEEEeccc
Confidence            4666555556788899999864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=92.96  E-value=0.28  Score=58.23  Aligned_cols=97  Identities=14%  Similarity=0.071  Sum_probs=58.9

Q ss_pred             CCeEEEEECCCC-cEEE-EeccCCCCeEEEEECCCCCEEEEEEcCC----CEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          348 AGIVVVKDFVTR-AIIS-QFKAHTSPISALCFDPSGTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       348 dG~V~IwDl~s~-~~i~-~~~aH~~~IsaLaFSpdG~lLATaS~dG----t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      ...|+++|+.++ +.+. .+..   ....++|+|||+.|+..+.+.    ..|.++++.+       +.      .....
T Consensus       200 ~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt-------~~------~~~~l  263 (751)
T 2xe4_A          200 VYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK-------LQ------SEDVC  263 (751)
T ss_dssp             CEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS-------CG------GGCEE
T ss_pred             eEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC-------Cc------hhcEE
Confidence            347999999998 6321 1211   134688999999888777642    2466667632       10      00123


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCC---CcEEEEeCCCC
Q 004255          422 LYKLHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSPF  463 (765)
Q Consensus       422 l~~l~rG~~~a~I~slaFSpDg~~Las~S~d---gTVhIwdl~~~  463 (765)
                      ++..   .......++.|||||++|+..+.+   ..|.++|+...
T Consensus       264 v~~~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          264 LYEE---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEC---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEec---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            4332   112235688999999999887743   24666777653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=92.58  E-value=2.8  Score=42.57  Aligned_cols=88  Identities=16%  Similarity=0.132  Sum_probs=57.5

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      +.|..+| .+++.+..+..+...+.++.++++|.+.+. +.++. +..+|..        |          ..++.+..+
T Consensus       195 ~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~-t~~~g-l~~~~~~--------g----------~~~~~~~~~  253 (330)
T 3hxj_A          195 DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT-SLDGH-LYAINPD--------G----------TEKWRFKTG  253 (330)
T ss_dssp             SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE-ETTTE-EEEECTT--------S----------CEEEEEECS
T ss_pred             CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE-cCCCe-EEEECCC--------C----------CEeEEeeCC
Confidence            6788888 677777777666677889999999987664 44354 6666641        3          244444432


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                        ...+.++.+.++++ |.+++.+|.+..||.
T Consensus       254 --~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          254 --KRIESSPVIGNTDT-IYFGSYDGHLYAINP  282 (330)
T ss_dssp             --SCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred             --CCccccceEcCCCe-EEEecCCCCEEEECC
Confidence              12234456666664 667888888888873

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.57  E-value=12  Score=42.96  Aligned_cols=56  Identities=9%  Similarity=-0.098  Sum_probs=40.2

Q ss_pred             EEEEEECCCCeEEEEEeCCCCE----------EEEEecCCeEEEE-eCCeEEEEECCCCceeEEEEe
Q 004255          174 AVRFYSFQSHCYEHVLRFRSSV----------CMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       174 tV~lWdlktg~~v~tL~~~s~V----------~sV~~s~~~LaV~-~~~~I~iwD~~t~~~l~tl~t  229 (765)
                      .|.-+|.++|+.+.+++.....          ..+......|.++ .++.|+.+|+.|++.++....
T Consensus        79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            4888999999999888764321          2223344455554 567899999999999988764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=91.67  E-value=14  Score=38.32  Aligned_cols=95  Identities=17%  Similarity=0.106  Sum_probs=55.0

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      .+.|.+.|+........+.........|+++|++..|.-+.... ..|..+++.        |.          ....+.
T Consensus        98 ~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--------G~----------~~~~~~  159 (316)
T 1ijq_A           98 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSLV  159 (316)
T ss_dssp             TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------CEEEEE
T ss_pred             CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--------CC----------CeEEEE
Confidence            34666677654433323332334568999999666555555422 457777752        31          122222


Q ss_pred             cccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS  461 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~  461 (765)
                      .. .-..-..|+|+++++.|..+. ..+.|..++++
T Consensus       160 ~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          160 TE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            11 112467899999877765554 56789888876

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=90.79  E-value=4.9  Score=43.43  Aligned_cols=98  Identities=13%  Similarity=0.236  Sum_probs=62.7

Q ss_pred             CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC----CCCE--EEEEEcCC---CEEEEEeCCCCcccCCCCCCccccC
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP----SGTL--LVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWN  416 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSp----dG~l--LATaS~dG---t~IrVWdi~~~~~~~~sG~~~~~~~  416 (765)
                      ...+-+.|||+ +++.+..+..  +.++.+.+-|    .|+.  ||.++..+   ..|+||++.+..             
T Consensus        47 ~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-------------  110 (355)
T 3amr_A           47 NKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-------------  110 (355)
T ss_dssp             ETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-------------
T ss_pred             cCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-------------
Confidence            34578999999 8888888864  4566666655    2332  45555543   679999885420             


Q ss_pred             CcceEEEEEec-----ccccccEEEEEE--ccC-CC-EEEEEeCCCcEEEEeCCC
Q 004255          417 SSHVHLYKLHR-----GITSATIQDICF--SHY-SQ-WIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       417 ~s~~~l~~l~r-----G~~~a~I~slaF--SpD-g~-~Las~S~dgTVhIwdl~~  462 (765)
                         ..+..+-+     +..-..++.+|+  +|+ ++ ++.+...+|.+..|++..
T Consensus       111 ---~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~  162 (355)
T 3amr_A          111 ---GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA  162 (355)
T ss_dssp             ---CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred             ---CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence               12333311     011134677888  775 44 688888899999999865

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=90.30  E-value=15  Score=42.30  Aligned_cols=57  Identities=9%  Similarity=-0.044  Sum_probs=39.6

Q ss_pred             CEEEEEEC-CCCeEEEEEeCCCCE------------EEEEe--cCCe----EEEE-eCCeEEEEECCCCceeEEEEe
Q 004255          173 TAVRFYSF-QSHCYEHVLRFRSSV------------CMVRC--SPRI----VAVG-LATQIYCFDALTLENKFSVLT  229 (765)
Q Consensus       173 ~tV~lWdl-ktg~~v~tL~~~s~V------------~sV~~--s~~~----LaV~-~~~~I~iwD~~t~~~l~tl~t  229 (765)
                      +.|.-+|. ++|+.+..++.....            ..+.+  ....    |.++ .++.|+.+|+.|++.++....
T Consensus        73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~  149 (599)
T 1w6s_A           73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN  149 (599)
T ss_dssp             TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence            56888999 999999888754311            22344  2222    5554 567899999999999887653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=90.06  E-value=9.9  Score=42.47  Aligned_cols=196  Identities=11%  Similarity=0.147  Sum_probs=106.0

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      ..+++|+|++++..+..+.-.. +|..=.|=.+ +.|+--.  ++.|.-|++...              ....++++.+.
T Consensus        85 g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT--~taVyHWsi~~~--------------s~P~kvFdR~~  146 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT--DNAVYHWSMEGE--------------SQPVKMFDRHS  146 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC--SSEEEEEESSSS--------------CCCEEEEECCG
T ss_pred             CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc--CCeeEEecccCC--------------CCchhheecch
Confidence            4589999999998877765543 5656565333 3444333  356899998421              11245544332


Q ss_pred             ccccccEEEEEEccCCCEEEEEeC-------CCcEEEEeCCCCCCCcccccccCCCCCCccccccCCCcccCCCCCccCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQ  500 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~-------dgTVhIwdl~~~gg~~~~~~h~~~~~~~~~~p~~~l~~~~~s~~~~~q~  500 (765)
                      -..+..|..-.-++|.+|++..+-       .|.+.+|.++. +....+.+|...                     |.++
T Consensus       147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~---------------------F~~~  204 (494)
T 1bpo_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAAS---------------------FAQF  204 (494)
T ss_dssp             GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEE---------------------EEEE
T ss_pred             hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeee---------------------eEEE
Confidence            233456888999999999986653       46788999875 455667777521                     1111


Q ss_pred             cCC-CCCCeeeeeeeeeeeCCCCcccccccccccccCccccccceeeeecccCcccccccccccc-CccccEEEEcCCcc
Q 004255          501 CVL-PPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT-NSLEHLLVYTPSGY  578 (765)
Q Consensus       501 ~~~-~~~~~~l~~~~~i~~~~~~w~~~~~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~~~~~-~~~~~Llv~s~~G~  578 (765)
                      .++ .+.|..|-..+. |.. +|..=.+-.-....++....+- ...++|-..-+...-|+...+ ++-+=+||.|--|+
T Consensus       205 ~~~g~~~~~~lf~fa~-r~~-~g~kLhi~Ei~~~~~~~~~f~k-k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~  281 (494)
T 1bpo_A          205 KMEGNAEESTLFCFAV-RGQ-AGGKLHIIEVGTPPTGNQPFPK-KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  281 (494)
T ss_dssp             ECTTCSSEEEEEEEEE-CST-TCCEEEEEECSCCCTTCCCCCC-EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE
T ss_pred             ecCCCCCCceEEEEEE-ecC-CCcEEEEEEcCCCccCCCCccc-eeeeeeCCcccccCceeEEEecccCCEEEEEecCce
Confidence            111 111222222111 111 1100000000011011111222 256777666554444432222 44566999999999


Q ss_pred             EEEEeccc
Q 004255          579 VVQHELLP  586 (765)
Q Consensus       579 l~~y~l~p  586 (765)
                      ++.|+|..
T Consensus       282 i~lyDleT  289 (494)
T 1bpo_A          282 IHLYDLET  289 (494)
T ss_dssp             EEEEETTT
T ss_pred             EEEEeccc
Confidence            99999965

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=89.87  E-value=2.6  Score=46.81  Aligned_cols=109  Identities=13%  Similarity=0.143  Sum_probs=70.1

Q ss_pred             CCCeEEEEECCCCcEEEEeccC----CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          347 NAGIVVVKDFVTRAIISQFKAH----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH----~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      .+..||.-++.....-+.++.-    -..|..+..||+|++||..+.  +.|.|-.+-....    .... +......+.
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~----~~~~-~~~~~~~q~  111 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND--NEIFVMEVPWGYS----NVED-VSIQDAFQI  111 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS--SEEEEEECCTTCS----CCCC-HHHHHTTEE
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC--CeEEEEEecCccc----cCcc-cccccccce
Confidence            4568888887754433333322    236788999999999999987  3599998832110    0000 000011233


Q ss_pred             EEEecccc----cccEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 004255          423 YKLHRGIT----SATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       423 ~~l~rG~~----~a~I~slaFSpDg---~~Las~S~dgTVhIwdl~~  462 (765)
                      +.++-|..    ...|..+-|+|-|   ..|++-..|++|++||+..
T Consensus       112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            34443321    3569999999865   5899999999999999986

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=89.81  E-value=2.5  Score=49.91  Aligned_cols=30  Identities=7%  Similarity=0.035  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCCEEEEEEcC--CCEEEEEeCC
Q 004255          371 PISALCFDPSGTLLVTASVY--GNNINIFRIM  400 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~d--Gt~IrVWdi~  400 (765)
                      ....+.|||||++|+..+..  ...|.++|+.
T Consensus       272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             CEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             eEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            45678999999998876643  3356667764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.56  E-value=50  Score=41.17  Aligned_cols=91  Identities=18%  Similarity=0.212  Sum_probs=57.3

Q ss_pred             eEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          350 IVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH-~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      .|++.+...++.+..++.- ...|.+.+.+.  .+++.++  |..+.+|++..       +           .+.+..+-
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~--g~~l~~fel~~-------~-----------~L~~~~~~  550 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV--GRALYYLQIHP-------Q-----------ELRQISHT  550 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE--TTEEEEEEEET-------T-----------EEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE--CCEEEEEEeeC-------C-----------ceeeeccc
Confidence            4566665554455555432 34677777654  4666664  45677888743       2           12222221


Q ss_pred             cccccEEEEEEccC------CCEEEEEeC-CCcEEEEeCCC
Q 004255          429 ITSATIQDICFSHY------SQWIAIVSS-KGTCHVFVLSP  462 (765)
Q Consensus       429 ~~~a~I~slaFSpD------g~~Las~S~-dgTVhIwdl~~  462 (765)
                      .-...|.|+++.|.      ++++|+|.. |++++|+.++.
T Consensus       551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            12346999999864      479999996 99999999973

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=89.53  E-value=6.2  Score=39.38  Aligned_cols=95  Identities=6%  Similarity=0.021  Sum_probs=59.7

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR  427 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r  427 (765)
                      .+.|.++|+........+.........|+|++++..|..+......|.++++..        .       ....+  +..
T Consensus        57 ~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--------~-------~~~~~--~~~  119 (267)
T 1npe_A           57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--------T-------QRRVL--FDT  119 (267)
T ss_dssp             TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C-------SCEEE--ECS
T ss_pred             CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC--------C-------CEEEE--EEC
Confidence            568888998766543334333345689999998777766666566788998732        1       00111  111


Q ss_pred             ccccccEEEEEEccCCCEEEEEeC---CCcEEEEeCC
Q 004255          428 GITSATIQDICFSHYSQWIAIVSS---KGTCHVFVLS  461 (765)
Q Consensus       428 G~~~a~I~slaFSpDg~~Las~S~---dgTVhIwdl~  461 (765)
                      +.  .....++|+|++.+|..+..   .+.|..++++
T Consensus       120 ~~--~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A          120 GL--VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             SC--SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CC--CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            21  23688999998776655554   3677777765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=88.11  E-value=12  Score=40.90  Aligned_cols=72  Identities=11%  Similarity=0.053  Sum_probs=44.3

Q ss_pred             eEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE-EE
Q 004255          372 ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA-IV  449 (765)
Q Consensus       372 IsaLaFSp-dG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La-s~  449 (765)
                      ...++++| +|.++++-.. ...|.+|+...       +.        ...+..+  +. ...-..|+|+|||++|. +-
T Consensus       228 p~giavdp~~g~lyv~d~~-~~~V~~~~~~~-------~~--------~~~~~~~--~~-~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWN-AGQVFRYDFTT-------QE--------TTPLFTI--QD-SGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             CCCEEECTTTCCEEEEETT-TTEEEEEETTT-------TE--------EEEEEEC--SS-SSCCEEEEECTTSSEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECC-CCEEEEEECCC-------Cc--------EEEEEEc--CC-CCcceeEEEcCCCCEEEEEE
Confidence            35688999 6776665444 45688888742       10        0112221  11 12356899999999554 44


Q ss_pred             eCCCcEEEEeCCC
Q 004255          450 SSKGTCHVFVLSP  462 (765)
Q Consensus       450 S~dgTVhIwdl~~  462 (765)
                      ...+.|+.|+.+.
T Consensus       289 ~~~~~I~~~~~d~  301 (430)
T 3tc9_A          289 VNQHYILRSDYDW  301 (430)
T ss_dssp             TTTTEEEEEEEET
T ss_pred             CCCCEEEEEeCCc
Confidence            5678899888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=86.61  E-value=37  Score=36.27  Aligned_cols=73  Identities=8%  Similarity=-0.004  Sum_probs=43.8

Q ss_pred             CCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 004255          370 SPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI  448 (765)
Q Consensus       370 ~~IsaLaFSpdG~lLATaS~dG-t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las  448 (765)
                      ..-..|+++|++..|.-+.... ..|..++..        |.        .... ....+.  ..-..|+|+|+++.|..
T Consensus       202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------G~--------~~~~-~~~~~~--~~PnGlavd~~~~~lY~  262 (386)
T 3v65_B          202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GS--------GRRI-IADTHL--FWPNGLTIDYAGRRMYW  262 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC--------SCEE-EECSSC--SCEEEEEEEGGGTEEEE
T ss_pred             CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--------CC--------CcEE-EEECCC--CCeeeEEEeCCCCEEEE
Confidence            4458899999766666555534 557777652        21        0111 111221  23678999988776655


Q ss_pred             E-eCCCcEEEEeCC
Q 004255          449 V-SSKGTCHVFVLS  461 (765)
Q Consensus       449 ~-S~dgTVhIwdl~  461 (765)
                      + +..+.|..++++
T Consensus       263 aD~~~~~I~~~d~d  276 (386)
T 3v65_B          263 VDAKHHVIERANLD  276 (386)
T ss_dssp             EETTTTEEEEECTT
T ss_pred             EECCCCEEEEEeCC
Confidence            5 455678887765

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=86.11  E-value=5.4  Score=40.98  Aligned_cols=79  Identities=18%  Similarity=0.221  Sum_probs=48.6

Q ss_pred             CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 004255          359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (765)
Q Consensus       359 ~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sla  438 (765)
                      .+.+..|..+ .....++|+++|+++++-.. +..|..||..        +          .....+..+   .....|+
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~-~~~I~~~d~~--------g----------~~~~~~~~~---~~p~gia   78 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHE-VGEIVSITPD--------G----------NQQIHATVE---GKVSGLA   78 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETT-TTEEEEECTT--------C----------CEEEEEECS---SEEEEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCC-CCeEEEECCC--------C----------ceEEEEeCC---CCceeEE
Confidence            4456667544 34678999999997776545 4557778753        2          122222212   3578999


Q ss_pred             EccCCCEEEEEeCCCc--EEEEeC
Q 004255          439 FSHYSQWIAIVSSKGT--CHVFVL  460 (765)
Q Consensus       439 FSpDg~~Las~S~dgT--VhIwdl  460 (765)
                      |++||+++++......  |..++.
T Consensus        79 ~~~dG~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           79 FTSNGDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             EcCCCcEEEEeccCCcceEEEEcC
Confidence            9999997666544333  444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=85.93  E-value=21  Score=45.35  Aligned_cols=48  Identities=10%  Similarity=0.176  Sum_probs=40.9

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEE-ecCCeEEEEeCCeEEEEECCC
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVR-CSPRIVAVGLATQIYCFDALT  220 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~-~s~~~LaV~~~~~I~iwD~~t  220 (765)
                      ++++|+|+.+.+.+++..++..|.==+ ++++.|+...+..||-|++..
T Consensus        86 ~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~  134 (1630)
T 1xi4_A           86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG  134 (1630)
T ss_pred             CeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence            689999999999999999988775444 478999988889999999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=84.49  E-value=43  Score=35.17  Aligned_cols=93  Identities=8%  Similarity=-0.058  Sum_probs=52.3

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-e
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-H  426 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG-t~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l-~  426 (765)
                      +.|.+.|+........+......-..|+++|++..|.-+.... ..|..+++.        |.          ....+ .
T Consensus       138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------G~----------~~~~~~~  199 (349)
T 3v64_C          138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GS----------GRRIIAD  199 (349)
T ss_dssp             TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------SCEESCC
T ss_pred             CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------CC----------CcEEEEE
Confidence            3555666554332222333334568899999666555555434 557777752        21          11111 1


Q ss_pred             cccccccEEEEEEccCCCEEEEE-eCCCcEEEEeCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLS  461 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~-S~dgTVhIwdl~  461 (765)
                      .+  -..-..|+|+|+++.|..+ +..++|..++++
T Consensus       200 ~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          200 TH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             SS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            11  1236789999887766555 456778888875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=84.46  E-value=44  Score=36.37  Aligned_cols=53  Identities=25%  Similarity=0.194  Sum_probs=35.5

Q ss_pred             CCeEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 004255          348 AGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIM  400 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~  400 (765)
                      .+.|..+|..++.....+.. ....-..|+|+|+|++|..+....+.|.+|+..
T Consensus       247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            45788888876654222221 113357899999999777777767788888763

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=81.93  E-value=60  Score=34.88  Aligned_cols=95  Identities=16%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~-dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      .+.|.+.|+........+...-.....|+++|.+.+|.-+.. +...|...++.        |.        .... -+.
T Consensus       180 ~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--------G~--------~~~~-~~~  242 (400)
T 3p5b_L          180 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV--------DIYS-LVT  242 (400)
T ss_dssp             TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--------SC--------SCEE-EEC
T ss_pred             CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--------CC--------ccEE-EEE
Confidence            346667776655443334333345689999996665555543 22347777762        21        0111 111


Q ss_pred             cccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS  461 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~  461 (765)
                      .+.  ..-..|+|+++++.|..+. ..++|..+|++
T Consensus       243 ~~l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          243 ENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCC--CceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence            121  2468899999888776664 45678888875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=81.69  E-value=12  Score=38.31  Aligned_cols=86  Identities=10%  Similarity=0.098  Sum_probs=51.8

Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ..|.|..||..+++....... -...+.|+|+|+|++|..+......|.+|++....    .+        . ...+.  
T Consensus       163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~----~~--------~-~~~~~--  226 (322)
T 2fp8_A          163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK----KG--------T-AEVLV--  226 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT----TT--------C-EEEEE--
T ss_pred             CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc----CC--------c-cceEE--
Confidence            457888999877764332222 12345799999999776665545679999975310    01        0 12221  


Q ss_pred             cccccccEEEEEEccCCCEEEEEeC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSS  451 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~  451 (765)
                      .  ... ...|++.+||++.++...
T Consensus       227 ~--~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          227 K--IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             E--CSS-EEEEEECTTSCEEEEEEE
T ss_pred             e--CCC-CCCeEECCCCCEEEEecC
Confidence            1  112 577999999986665544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=81.53  E-value=87  Score=36.53  Aligned_cols=96  Identities=14%  Similarity=0.121  Sum_probs=58.6

Q ss_pred             CCCCeEEEEECCCCcEEEEecc--------CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255          346 DNAGIVVVKDFVTRAIISQFKA--------HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~a--------H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~  417 (765)
                      ..+|-|..||..+++.......        ....|.+++.+++|++|..|+.++. +.+||...       +        
T Consensus       374 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~-------~--------  437 (795)
T 4a2l_A          374 TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNS-------G--------  437 (795)
T ss_dssp             ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTT-------C--------
T ss_pred             ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCC-------C--------
Confidence            3455688888877654332211        2357999999999994445665343 88898754       2        


Q ss_pred             cceEEEEEec---ccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          418 SHVHLYKLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       418 s~~~l~~l~r---G~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                         ....+..   +.....|.++...++|+..+.+ .+| +.+|+...
T Consensus       438 ---~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~  480 (795)
T 4a2l_A          438 ---QVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQ  480 (795)
T ss_dssp             ---CEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTT
T ss_pred             ---cEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCC
Confidence               2222221   1122469999999999855443 444 77887653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=80.32  E-value=72  Score=34.77  Aligned_cols=100  Identities=12%  Similarity=0.038  Sum_probs=58.3

Q ss_pred             CCCeEEEEECCCCcEEEEe-ccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255          347 NAGIVVVKDFVTRAIISQF-KAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~-~aH~-~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~  424 (765)
                      ..+.|+.+|..++.....+ .... ..-..|+|+|+|+.|..+....+.|+.++.....     +.        ....+.
T Consensus       248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~-----~~--------~~~~~~  314 (433)
T 4hw6_A          248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRET-----GK--------LAVPYI  314 (433)
T ss_dssp             TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTT-----CC--------BCCCEE
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCC-----cc--------cCcEEE
Confidence            3467888888766653332 2111 2234699999999777777767788888864210     10        000011


Q ss_pred             Eec-----cc--------ccccEEEEEE---------ccCCCEEEEEeCCCcEEEEe
Q 004255          425 LHR-----GI--------TSATIQDICF---------SHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       425 l~r-----G~--------~~a~I~slaF---------SpDg~~Las~S~dgTVhIwd  459 (765)
                      +..     |.        .-..-..|+|         .++|++.++-+..+.|+.++
T Consensus       315 ~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          315 VCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             EEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             EEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            100     00        0113577999         77887777777778888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	765
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 18/108 (16%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410
             + D         F  H S I+A+CF P+G    T                   S    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG------------------SDDAT 249

Query: 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
            +     +   L           I  + FS   + +        C+V+
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 8/40 (20%), Positives = 12/40 (30%)

Query: 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS 388
               V D +          H + +S L     G  + T S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 10/94 (10%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424
              H   + ++ F   G  +V+ S+  +               + N+K D  + +    +
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVK--------LWNLQNANNKSDSKTPNSGTCE 301

Query: 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
           +        +  +  +   ++I   S       +
Sbjct: 302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI-MPSCMRSGSGNHKYDWNSSHVHL 422
           +   HTS +  + F   G  L T         ++R+   S +   S +   + +  +++ 
Sbjct: 57  KSLDHTSVVCCVKFSNDGEYLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCH 456
                  +   I+ +CFS   +++A  +      
Sbjct: 115 SSSPS--SDLYIRSVCFSPDGKFLATGAEDRLIR 146

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 9/95 (9%), Positives = 22/95 (23%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410
           V      +      +  H+   +     PSG    +  V+GN         + +   +  
Sbjct: 40  VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 99

Query: 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445
                        +  R       ++     +   
Sbjct: 100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 21/150 (14%), Positives = 48/150 (32%), Gaps = 2/150 (1%)

Query: 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424
              H SP++ + F P  +++V+AS     I ++    +     +     D        + 
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSAS-EDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHS 70

Query: 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 484
                + +    I    +  +  I +  G  H         +      +S+     ++ V
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 485 LSLPWWCTSSGISEQQCVLPPPPVTLSVVS 514
            +     T +G  E   ++ P      + S
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 20/110 (18%)

Query: 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408
             + + D  T   +     H + +  + F   G  +++ +     + ++           
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-DDKTLRVWDYK-------- 277

Query: 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
                  N   +     H       +  + F   + ++   S   T  V+
Sbjct: 278 -------NKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 18/91 (19%)

Query: 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427
              PIS   ++   T +       + ++I+    +                 VH  K H 
Sbjct: 6   LVEPISCHAWNKDRTQIAICP-NNHEVHIYEKSGN-------------KWVQVHELKEHN 51

Query: 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
           G     +  + ++  S  I    +    +V+
Sbjct: 52  G----QVTGVDWAPDSNRIVTCGTDRNAYVW 78

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 17/96 (17%)

Query: 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420
           I+   +A    IS +   PS +LL+  S +  ++ +                Y ++    
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITS-WDGSLTV----------------YKFDIQAK 45

Query: 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCH 456
           ++  L        +    F   +     V +     
Sbjct: 46  NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	765
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.9
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.88
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.87
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.87
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.86
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.86
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.83
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.82
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.81
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.81
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.79
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.79
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.79
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.78
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.77
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.77
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.76
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.75
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.75
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.74
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.71
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.67
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.64
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.64
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.64
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.62
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.6
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.52
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.37
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.36
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.31
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.29
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.2
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.16
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.07
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.04
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.67
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.57
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.54
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.22
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.01
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.92
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.9
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.67
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.58
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.27
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.05
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.19
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.53
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.51
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.49
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	95.38
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	94.94
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.58
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.53
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	94.34
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	91.76
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	90.72
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	90.43
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.29
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	88.66
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	83.98
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	82.55
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	81.17
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	80.94

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.7e-23  Score=210.40  Aligned_cols=298  Identities=12%  Similarity=0.087  Sum_probs=197.9

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..+|++.|..+.|..       .+++|++|..+| ++|||++ ++++...+..|.++|..+++.|+             .
T Consensus        13 L~GH~~~I~~l~~sp-------~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~~~h~~~V~~~~~~~~-------------~   71 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHP-------VFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHS-------------G   71 (317)
T ss_dssp             EECCSSCEEEEEECS-------SSSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTT-------------S
T ss_pred             EcCCCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEECC-CCCEEEEEeCCCCcEEEEeeecc-------------c
Confidence            356889999999965       256888888776 9999995 57788889999999999999864             2


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCCEEEEEecC--CeEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAV  207 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~sV~~s~--~~LaV  207 (765)
                      .+++....                                 ..++.+|+....+....+.. ...+..+.+++  +.|++
T Consensus        72 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (317)
T d1vyhc1          72 KLLASCSA---------------------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS  118 (317)
T ss_dssp             SEEEEEET---------------------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEE
T ss_pred             cccccccc---------------------------------ccccccccccccccccccccccccceeeeccCCCceEEe
Confidence            36654321                                 24678899988887776654 45788888876  56665


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (765)
Q Consensus       208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~  284 (765)
                      +. ++.+++||+.+++.+.++..+...             ...+++++  ++||+++.+..+.     .|+..+......
T Consensus       119 ~~~d~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~d~~v~-----~~~~~~~~~~~~  180 (317)
T d1vyhc1         119 ASRDKTIKMWEVQTGYCVKTFTGHREW-------------VRMVRPNQDGTLIASCSNDQTVR-----VWVVATKECKAE  180 (317)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEECTTSSEEEEEETTSCEE-----EEETTTCCEEEE
T ss_pred             eccCcceeEeecccceeeeEEccCCCc-------------ceeeecccCCCEEEEEeCCCeEE-----EEeeccceeeEE
Confidence            54 568999999999998888876552             34567777  7888876653110     111111000000


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~  364 (765)
                      -...........+..+.......             ...... .....    ........+..||.|++||+.+++.+.+
T Consensus       181 ~~~~~~~i~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~----~~~~~~~~~~~d~~i~~~~~~~~~~~~~  242 (317)
T d1vyhc1         181 LREHRHVVECISWAPESSYSSIS-------------EATGSE-TKKSG----KPGPFLLSGSRDKTIKMWDVSTGMCLMT  242 (317)
T ss_dssp             ECCCSSCEEEEEECCSCGGGGGG-------------GCCSCC------------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EecCCCCceEEEEeeccccceee-------------ccccce-eeeec----cCCceeEeccCCCEEEEEECCCCcEEEE
Confidence            00000000000000000000000             000000 00000    0011133567899999999999999999


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 004255          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (765)
Q Consensus       365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (765)
                      +.+|..+|.+++|+|+|++||+++.|| .|+|||+..       +          +.+..+. + +...|++|+|+||++
T Consensus       243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~iwd~~~-------~----------~~~~~~~-~-h~~~V~~~~~s~~~~  302 (317)
T d1vyhc1         243 LVGHDNWVRGVLFHSGGKFILSCADDK-TLRVWDYKN-------K----------RCMKTLN-A-HEHFVTSLDFHKTAP  302 (317)
T ss_dssp             EECCSSCEEEEEECSSSSCEEEEETTT-EEEEECCTT-------S----------CCCEEEE-C-CSSCEEEEEECSSSS
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEECCC-eEEEEECCC-------C----------cEEEEEc-C-CCCCEEEEEEcCCCC
Confidence            999999999999999999999999966 599999964       3          3555664 3 345799999999999


Q ss_pred             EEEEEeCCCcEEEEe
Q 004255          445 WIAIVSSKGTCHVFV  459 (765)
Q Consensus       445 ~Las~S~dgTVhIwd  459 (765)
                      +|++++.||+|+|||
T Consensus       303 ~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         303 YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTSEEEEEC
T ss_pred             EEEEEeCCCeEEEeC
Confidence            999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=4.4e-23  Score=216.73  Aligned_cols=238  Identities=12%  Similarity=0.085  Sum_probs=176.7

Q ss_pred             CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCC
Q 004255           75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG  154 (765)
Q Consensus        75 ~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~  154 (765)
                      ++.|+.+..+.+.+||++ ..+..+++..|.++|.++++.|+             +.+||+..                 
T Consensus        29 g~~l~~~~~~~v~i~~~~-~~~~~~~~~~H~~~v~~~~~sp~-------------g~~latg~-----------------   77 (311)
T d1nr0a1          29 GDKIQYCNGTSVYTVPVG-SLTDTEIYTEHSHQTTVAKTSPS-------------GYYCASGD-----------------   77 (311)
T ss_dssp             SSEEEEEETTEEEEEETT-CSSCCEEECCCSSCEEEEEECTT-------------SSEEEEEE-----------------
T ss_pred             CCEEEEEeCCEEEEEECC-CCceeEEEcCCCCCEEEEEEeCC-------------CCeEeccc-----------------
Confidence            567888877789999995 46677889999999999999975             23776522                 


Q ss_pred             CcccCCcCCCCCCCCCCCCEEEEEECCCCeEE--EEEe-CCCCEEEEEecC--CeEEEEeCC---eEEEEECCCCceeEE
Q 004255          155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE--HVLR-FRSSVCMVRCSP--RIVAVGLAT---QIYCFDALTLENKFS  226 (765)
Q Consensus       155 ~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v--~tL~-~~s~V~sV~~s~--~~LaV~~~~---~I~iwD~~t~~~l~t  226 (765)
                                      .+++|+|||+.+++.+  .++. +..+|.+|++++  ++|+++.++   .+++||..+++...+
T Consensus        78 ----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~  141 (311)
T d1nr0a1          78 ----------------VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN  141 (311)
T ss_dssp             ----------------TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred             ----------------cCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccc
Confidence                            1369999999987643  4555 456999999998  567766543   499999999887777


Q ss_pred             EEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhh
Q 004255          227 VLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA  306 (765)
Q Consensus       227 l~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la  306 (765)
                      +..|..+             ...++|+|       +.                           .-              
T Consensus       142 l~~h~~~-------------v~~v~~~~-------~~---------------------------~~--------------  160 (311)
T d1nr0a1         142 LTGQARA-------------MNSVDFKP-------SR---------------------------PF--------------  160 (311)
T ss_dssp             CCCCSSC-------------EEEEEECS-------SS---------------------------SC--------------
T ss_pred             ccccccc-------------cccccccc-------cc---------------------------ee--------------
Confidence            6655431             12233322       10                           00              


Q ss_pred             cccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 004255          307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT  386 (765)
Q Consensus       307 ~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLAT  386 (765)
                                                        .++++..||.|+|||+.+++.+..+.+|..+|.+++|+|+|++|++
T Consensus       161 ----------------------------------~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~  206 (311)
T d1nr0a1         161 ----------------------------------RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS  206 (311)
T ss_dssp             ----------------------------------EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ----------------------------------eecccccccccccccccccccccccccccccccccccCcccccccc
Confidence                                              0123456899999999999999999999999999999999999999


Q ss_pred             EEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc-----cccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-----ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       387 aS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG-----~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      ++.||. |+|||+..       +          ..+..+...     .+.+.|++++|+|||++|++++.||+|+|||++
T Consensus       207 ~~~d~~-v~~~d~~~-------~----------~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         207 TGGDGT-IVLYNGVD-------G----------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             EETTSC-EEEEETTT-------C----------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cccccc-cccccccc-------c----------cccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            999775 99999865       2          234443221     123569999999999999999999999999998


Q ss_pred             CCCCCcccccc
Q 004255          462 PFGGDSGFQTL  472 (765)
Q Consensus       462 ~~gg~~~~~~h  472 (765)
                      +......+..|
T Consensus       269 t~~~~~~l~~~  279 (311)
T d1nr0a1         269 TLKVEKTIPVG  279 (311)
T ss_dssp             TTEEEEEEECC
T ss_pred             CCcEEEEEECC
Confidence            65433334333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.8e-23  Score=214.16  Aligned_cols=275  Identities=13%  Similarity=0.057  Sum_probs=188.4

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceE----eeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNE----LVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~e----lls~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      +|++.|..+.|..       .++.|++|.++.++|||++.......    ....|+++|.+|+++|+.            
T Consensus        49 ~H~~~V~~v~fs~-------~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg------------  109 (337)
T d1gxra_          49 NHGEVVCAVTISN-------PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------  109 (337)
T ss_dssp             CCSSCCCEEEECS-------SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS------------
T ss_pred             CCCCcEEEEEECC-------CCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC------------
Confidence            4677888888865       36789999876799999965432221    234677899999999752            


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEeCC-CCEEEEEecC--Ce
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP--RI  204 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg--~~v~tL~~~-s~V~sV~~s~--~~  204 (765)
                       .+|++.+.                                 +++|++||+...  +....+..+ ..|..+.+++  .+
T Consensus       110 -~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  155 (337)
T d1gxra_         110 -CTLIVGGE---------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV  155 (337)
T ss_dssp             -SEEEEEES---------------------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE
T ss_pred             -CEEEEeec---------------------------------cccccccccccccccccccccccccccccccccccccc
Confidence             36655321                                 368999998744  556666654 5788999887  56


Q ss_pred             EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCC
Q 004255          205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       205 LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                      |+++. +..|++||+.++++......+..+             ...+++++  .++++++.+..+     ..|+..+.  
T Consensus       156 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~-------------v~~l~~s~~~~~~~~~~~d~~v-----~i~d~~~~--  215 (337)
T d1gxra_         156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASCIDISNDGTKLWTGGLDNTV-----RSWDLREG--  215 (337)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEE-----EEEETTTT--
T ss_pred             cccccccccccccccccccccccccccccc-------------cccccccccccccccccccccc-----cccccccc--
Confidence            77655 457999999999877766655542             34577777  677777654211     11221110  


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~  361 (765)
                                ..+                +++. +      .+....+.+++.++    .++.+..+|.|++||+.+++.
T Consensus       216 ----------~~~----------------~~~~-~------~~~i~~l~~~~~~~----~l~~~~~d~~i~i~d~~~~~~  258 (337)
T d1gxra_         216 ----------RQL----------------QQHD-F------TSQIFSLGYCPTGE----WLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             ----------EEE----------------EEEE-C------SSCEEEEEECTTSS----EEEEEETTSCEEEEETTSSCE
T ss_pred             ----------eee----------------cccc-c------ccceEEEEEccccc----ccceecccccccccccccccc
Confidence                      000                0000 0      00011111222222    234567899999999998876


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255          362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (765)
Q Consensus       362 i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (765)
                      . ....|..+|.+++|+|+|++|+|++.|| .|+|||+..       +          ..+..+.   +...|.+++|||
T Consensus       259 ~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg-~i~iwd~~~-------~----------~~~~~~~---~~~~v~~~~~s~  316 (337)
T d1gxra_         259 Y-QLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWRTPY-------G----------ASIFQSK---ESSSVLSCDISV  316 (337)
T ss_dssp             E-EECCCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE---CSSCEEEEEECT
T ss_pred             c-cccccccccceEEECCCCCEEEEEeCCC-eEEEEECCC-------C----------CEEEEcc---CCCCEEEEEEeC
Confidence            4 5678999999999999999999999966 599999865       3          3555543   235799999999


Q ss_pred             CCCEEEEEeCCCcEEEEeC
Q 004255          442 YSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       442 Dg~~Las~S~dgTVhIwdl  460 (765)
                      |+++|++++.||+|+||||
T Consensus       317 d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         317 DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=4e-22  Score=209.30  Aligned_cols=240  Identities=16%  Similarity=0.167  Sum_probs=176.0

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcc-eEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~-~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      .+|++.|..+.|..       .++.|++|..+| ++|||+...... ...+..|.++|.+|++.|+             .
T Consensus        55 ~~H~~~v~~~~~sp-------~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d-------------~  114 (311)
T d1nr0a1          55 TEHSHQTTVAKTSP-------SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE-------------S  114 (311)
T ss_dssp             CCCSSCEEEEEECT-------TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT-------------S
T ss_pred             cCCCCCEEEEEEeC-------CCCeEeccccCceEeeeeeeccccccccccccccCcccccccccc-------------c
Confidence            45788899888843       367888888776 999999764433 3457788999999999874             2


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC--C-eEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R-IVA  206 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~--~-~La  206 (765)
                      .+|++++.+                               .+..+++|++++++.+.++.++ ..|.+|+|++  + +|+
T Consensus       115 ~~l~~~~~~-------------------------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~  163 (311)
T d1nr0a1         115 KRIAAVGEG-------------------------------RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII  163 (311)
T ss_dssp             CEEEEEECC-------------------------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             ccccccccc-------------------------------ccccccccccccccccccccccccccccccccccceeeec
Confidence            366654321                               1357999999999999988875 5799999987  3 466


Q ss_pred             EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCC
Q 004255          207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (765)
Q Consensus       207 V~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s  283 (765)
                      +|. ++.|++||+.+++....+..|..+             ...++++|  ++|                          
T Consensus       164 sgs~d~~i~i~d~~~~~~~~~~~~~~~~-------------i~~v~~~p~~~~l--------------------------  204 (311)
T d1nr0a1         164 SGSDDNTVAIFEGPPFKFKSTFGEHTKF-------------VHSVRYNPDGSLF--------------------------  204 (311)
T ss_dssp             EEETTSCEEEEETTTBEEEEEECCCSSC-------------EEEEEECTTSSEE--------------------------
T ss_pred             cccccccccccccccccccccccccccc-------------ccccccCcccccc--------------------------
Confidence            554 567999999999887777665542             12333332  111                          


Q ss_pred             CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE
Q 004255          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS  363 (765)
Q Consensus       284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~  363 (765)
                                                                                 +.+..||.|+|||+.+++.+.
T Consensus       205 -----------------------------------------------------------~~~~~d~~v~~~d~~~~~~~~  225 (311)
T d1nr0a1         205 -----------------------------------------------------------ASTGGDGTIVLYNGVDGTKTG  225 (311)
T ss_dssp             -----------------------------------------------------------EEEETTSCEEEEETTTCCEEE
T ss_pred             -----------------------------------------------------------ccccccccccccccccccccc
Confidence                                                                       123467899999999988777


Q ss_pred             Eec-------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-cccEE
Q 004255          364 QFK-------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQ  435 (765)
Q Consensus       364 ~~~-------aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~-~a~I~  435 (765)
                      .+.       +|..+|.+|+|+|+|++||||+.|| .|+|||+.+       +          ..+.++..+.. ...+.
T Consensus       226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-~v~iwd~~t-------~----------~~~~~l~~~~~~~~~~~  287 (311)
T d1nr0a1         226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-TIKIWNVAT-------L----------KVEKTIPVGTRIEDQQL  287 (311)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------T----------EEEEEEECCSSGGGCEE
T ss_pred             cccccccccccccccccccccCCCCCEEEEEeCCC-eEEEEECCC-------C----------cEEEEEECCCCccceEE
Confidence            664       6899999999999999999999966 599999865       3          46666654322 12344


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          436 DICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       436 slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      ++.|  ++++|++++.||+|++||++
T Consensus       288 ~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         288 GIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             EEEe--cCCEEEEEECCCEEEEEeCC
Confidence            5555  55679999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=3.5e-21  Score=197.10  Aligned_cols=269  Identities=12%  Similarity=0.088  Sum_probs=181.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..+|++.|..+.|..       .++.|++|..+| ++|||+. .++....+..|.++|..+++.|+.             
T Consensus        51 L~GH~~~I~~l~~s~-------~~~~l~sgs~Dg~v~iWd~~-~~~~~~~~~~~~~~v~~v~~~~~~-------------  109 (340)
T d1tbga_          51 LRGHLAKIYAMHWGT-------DSRLLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSG-------------  109 (340)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETT-TTEEEEEEECSCSCEEEEEECTTS-------------
T ss_pred             ECCCCCCEEEEEECC-------CCCEEEEEECCCceeeeecc-cceeEEEEecccccEEeeEeeccc-------------
Confidence            457999999999965       356899998887 9999995 577778888999999999998752             


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCC-cc--cCCcCC-------CCC--CCCCCCCEEEEEECCCCeEEEEEeC-CCCEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGG-VR--DGMMDS-------QSG--NCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCM  197 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~-~r--~g~~~~-------~~~--~~~~~p~tV~lWdlktg~~v~tL~~-~s~V~s  197 (765)
                      .+|++.+.+................ .+  .+....       ...  .....+.+...|+..+......... ...+..
T Consensus       110 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (340)
T d1tbga_         110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS  189 (340)
T ss_dssp             SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             eeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEee
Confidence            3555433322100000000000000 00  000000       000  0012346677777777666555543 456777


Q ss_pred             EEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccc
Q 004255          198 VRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRL  272 (765)
Q Consensus       198 V~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~  272 (765)
                      +.+.+  .+++++. ++.|++||+.+++++.++..|..+             ...++++|  ++|               
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~-------------i~~v~~~p~~~~l---------------  241 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD-------------INAICFFPNGNAF---------------  241 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEE---------------
T ss_pred             eccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCC-------------eEEEEECCCCCEE---------------
Confidence            77665  5566554 567999999999888887766542             22344433  111               


Q ss_pred             cCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEE
Q 004255          273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV  352 (765)
Q Consensus       273 s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~  352 (765)
                                                                                            +.++.||.|+
T Consensus       242 ----------------------------------------------------------------------~s~s~d~~i~  251 (340)
T d1tbga_         242 ----------------------------------------------------------------------ATGSDDATCR  251 (340)
T ss_dssp             ----------------------------------------------------------------------EEEETTSCEE
T ss_pred             ----------------------------------------------------------------------EEEeCCCeEE
Confidence                                                                                  1234688999


Q ss_pred             EEECCCCcEEEEe--ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 004255          353 VKDFVTRAIISQF--KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT  430 (765)
Q Consensus       353 IwDl~s~~~i~~~--~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~  430 (765)
                      +||+.....+..+  ..|..+|.+++|+|+|++|++|+.||. |+|||+..       +          ..+..+. |+ 
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~~-------~----------~~~~~~~-~H-  311 (340)
T d1tbga_         252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALK-------A----------DRAGVLA-GH-  311 (340)
T ss_dssp             EEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEETTT-------C----------CEEEEEC-CC-
T ss_pred             EEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE-EEEEECCC-------C----------cEEEEEc-CC-
Confidence            9999998877765  467788999999999999999999775 99999864       3          4667764 43 


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 004255          431 SATIQDICFSHYSQWIAIVSSKGTCHVFV  459 (765)
Q Consensus       431 ~a~I~slaFSpDg~~Las~S~dgTVhIwd  459 (765)
                      ...|++|+|+||+++||++|.||+|+|||
T Consensus       312 ~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            45799999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.4e-21  Score=203.09  Aligned_cols=262  Identities=15%  Similarity=0.105  Sum_probs=177.7

Q ss_pred             CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeee------------------eccCCEEEEEEec
Q 004255           54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVS------------------KRDGPVSFLQMQP  115 (765)
Q Consensus        54 ~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g~~~ells------------------~~dg~V~~v~~lP  115 (765)
                      +|++.|..+.|+.       ++++|++|.++.++|||+.. +++...+.                  .|+..|.+|++.|
T Consensus        60 ~H~~~V~~l~fs~-------dg~~lasg~d~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  131 (388)
T d1erja_          60 DHTSVVCCVKFSN-------DGEYLATGCNKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  131 (388)
T ss_dssp             ECSSCCCEEEECT-------TSSEEEEECBSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred             CCCCcEEEEEECC-------CCCEEEEEeCCeEEEEEecc-cceEeeecccccccccccccccccccCCCCCEEEEEECC
Confidence            4788899998865       36789999877899999964 44444443                  2445688888886


Q ss_pred             CCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCC
Q 004255          116 FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSS  194 (765)
Q Consensus       116 ~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~-~s~  194 (765)
                      +             ..+|++.+.                                 +++|++||..+++.+..+.. ...
T Consensus       132 ~-------------~~~l~s~~~---------------------------------dg~v~i~~~~~~~~~~~~~~h~~~  165 (388)
T d1erja_         132 D-------------GKFLATGAE---------------------------------DRLIRIWDIENRKIVMILQGHEQD  165 (388)
T ss_dssp             T-------------SSEEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSC
T ss_pred             C-------------CCcceeccc---------------------------------cccccccccccccccccccccccc
Confidence            4             236655221                                 36899999999999999985 468


Q ss_pred             EEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCcc
Q 004255          195 VCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR  271 (765)
Q Consensus       195 V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~  271 (765)
                      |.++.+++  ..++++. ++.|++||..+.........+...              ..+++       ...+        
T Consensus       166 v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------------~~~~~-------~~~~--------  216 (388)
T d1erja_         166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV--------------TTVAV-------SPGD--------  216 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE--------------EEEEE-------CSTT--------
T ss_pred             ccccccccccccccccccceeeeeeecccccccccccccccc--------------ccccc-------cCCC--------
Confidence            99999887  4555554 567999999988765554432210              01111       1100        


Q ss_pred             ccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeE
Q 004255          272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV  351 (765)
Q Consensus       272 ~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V  351 (765)
                                         +.                                                .++.+..||.|
T Consensus       217 -------------------~~------------------------------------------------~l~~~~~d~~i  229 (388)
T d1erja_         217 -------------------GK------------------------------------------------YIAAGSLDRAV  229 (388)
T ss_dssp             -------------------CC------------------------------------------------EEEEEETTSCE
T ss_pred             -------------------CC------------------------------------------------eEEEEcCCCeE
Confidence                               00                                                01234568899


Q ss_pred             EEEECCCCcEEEEe-------ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255          352 VVKDFVTRAIISQF-------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (765)
Q Consensus       352 ~IwDl~s~~~i~~~-------~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~  424 (765)
                      ++||+.++..+..+       .+|..+|.+|+|+|+|++|++++.|| .|++||+.......     .............
T Consensus       230 ~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~-----~~~~~~~~~~~~~  303 (388)
T d1erja_         230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNANNKS-----DSKTPNSGTCEVT  303 (388)
T ss_dssp             EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS-EEEEEEC--------------------CEEEE
T ss_pred             EEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC-cEEEEeccCCcccc-----ccccccccceeee
Confidence            99999988776655       36899999999999999999999966 59999986521000     0000000122222


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      ..  .+...|.+++|+|||++|++++.||+|+|||+........+++|.
T Consensus       304 ~~--~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~  350 (388)
T d1erja_         304 YI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR  350 (388)
T ss_dssp             EE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             cc--cccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC
Confidence            22  234569999999999999999999999999998765555666664

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=3e-20  Score=190.05  Aligned_cols=257  Identities=14%  Similarity=0.077  Sum_probs=166.1

Q ss_pred             ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (765)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~  176 (765)
                      .+++|.+|.++|.+|++.|+             .++||+.+.                                 +++|+
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~-------------~~~l~sgs~---------------------------------Dg~v~   80 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTD-------------SRLLVSASQ---------------------------------DGKLI   80 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTT-------------SSEEEEEET---------------------------------TTEEE
T ss_pred             eeEEECCCCCCEEEEEECCC-------------CCEEEEEEC---------------------------------CCcee
Confidence            56789999999999999875             247765321                                 36999


Q ss_pred             EEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEe-CCeEEEEECCCCcee----EEEEecCCcccCCCCccccccccc
Q 004255          177 FYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENK----FSVLTYPVPQLAGQGAVGINVGYG  248 (765)
Q Consensus       177 lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l----~tl~t~p~p~~~~~~~~~~~~~~~  248 (765)
                      |||+.+++.++++..+ ..|.++++++  ++|+++. +..|.+|+.......    ..+..+...             ..
T Consensus        81 iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~-------------~~  147 (340)
T d1tbga_          81 IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY-------------LS  147 (340)
T ss_dssp             EEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSC-------------EE
T ss_pred             eeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccc-------------cc
Confidence            9999999999999865 5899999987  5777655 567999997654422    222222210             00


Q ss_pred             eeEEcc-ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255          249 PMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (765)
Q Consensus       249 ~~Alsp-r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~  327 (765)
                      ...... ..+.....+....     .+.....            ...                ......      .....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------------~~~----------------~~~~~~------~~~~~  188 (340)
T d1tbga_         148 CCRFLDDNQIVTSSGDTTCA-----LWDIETG------------QQT----------------TTFTGH------TGDVM  188 (340)
T ss_dssp             EEEEEETTEEEEEETTTEEE-----EEETTTT------------EEE----------------EEEECC------SSCEE
T ss_pred             cccccccccccccccccccc-----ccccccc------------ccc----------------cccccc------ceeEe
Confidence            111111 2222222111000     0000000            000                000000      00000


Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG  407 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~  407 (765)
                      .....+.    ....+.+..||.|++||+.+++.+..|.+|..+|.+|+|+|+|.+||+++.||. |++||+...     
T Consensus       189 ~~~~~~~----~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~-----  258 (340)
T d1tbga_         189 SLSLAPD----TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRAD-----  258 (340)
T ss_dssp             EEEECTT----SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT-----
T ss_pred             eeccccc----cceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeeccc-----
Confidence            0000000    011235678999999999999999999999999999999999999999999775 999998541     


Q ss_pred             CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       408 sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                                  ..+..+....+...|.+++|+||+++|++++.||+|+|||+........+.+|.
T Consensus       259 ------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~  312 (340)
T d1tbga_         259 ------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             ------------EEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             ------------ccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC
Confidence                        344444333344569999999999999999999999999998765555566664

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.8e-20  Score=186.80  Aligned_cols=309  Identities=16%  Similarity=0.119  Sum_probs=195.3

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..+|++.|.- .|+.    +   ++.|++|..+| ++|||+. ++++...+..|.++|..+++.|+              
T Consensus        12 l~GH~~~V~s-~~~~----~---g~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~h~~~V~~v~~~~~--------------   68 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQF----C---GNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMRDN--------------   68 (342)
T ss_dssp             EECSTTSCEE-EEEE----E---TTEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEETT--------------
T ss_pred             ECCcCCceEE-EEEE----C---CCEEEEEeCCCeEEEEECC-CCCEEEEEeCCCCCEEEEEeCCC--------------
Confidence            3568888753 2433    1   34788888776 9999995 67888899999999999998753              


Q ss_pred             CEEEEEEcCCCCCCCC---CCC----cCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC
Q 004255          131 PFLLVVAGEDTNTLAP---GQN----RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP  202 (765)
Q Consensus       131 pLLavv~~d~~~~~~~---~~~----~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~  202 (765)
                       +|+..+.|.....-.   ...    ......+...............+.+|.+|+..+++....+... ..........
T Consensus        69 -~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
T d2ovrb2          69 -IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG  147 (342)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS
T ss_pred             -ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccc
Confidence             555433322110000   000    0000000000000000000124578999999999999888754 5666677777


Q ss_pred             CeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCC
Q 004255          203 RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       203 ~~LaV-~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                      ..+++ +.++.|++||....+.+.++..+...             ...+.+.+.+|++++.+..+     ..|+....  
T Consensus       148 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~s~~~dg~i-----~~~d~~~~--  207 (342)
T d2ovrb2         148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNR-------------VYSLQFDGIHVVSGSLDTSI-----RVWDVETG--  207 (342)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCSSC-------------EEEEEECSSEEEEEETTSCE-----EEEETTTC--
T ss_pred             ceeeeecCCCeEEEeecccceeeEEEcCcccc-------------cccccCCCCEEEEEeCCCeE-----EEeecccc--
Confidence            66655 45678999999999999999888763             23566778888888765311     12221110  


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~  361 (765)
                                ..+                +++..+.      .....+++++      ..++.++.||.|+|||+...+.
T Consensus       208 ----------~~~----------------~~~~~~~------~~v~~~~~~~------~~l~s~s~d~~i~iwd~~~~~~  249 (342)
T d2ovrb2         208 ----------NCI----------------HTLTGHQ------SLTSGMELKD------NILVSGNADSTVKIWDIKTGQC  249 (342)
T ss_dssp             ----------CEE----------------EEECCCC------SCEEEEEEET------TEEEEEETTSCEEEEETTTCCE
T ss_pred             ----------eee----------------eEecccc------cceeEEecCC------CEEEEEcCCCEEEEEecccccc
Confidence                      000                1111110      0001111111      1245677899999999999988


Q ss_pred             EEEecc---CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec---ccccccEE
Q 004255          362 ISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR---GITSATIQ  435 (765)
Q Consensus       362 i~~~~a---H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~r---G~~~a~I~  435 (765)
                      ...+.+   |...+.+++|+  +++|++|+.|| .|+|||+.+       |          +.++++..   +.+...|+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg-~i~iwd~~t-------g----------~~i~~~~~~~~~~~~~~v~  309 (342)
T d2ovrb2         250 LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG-TVKLWDLKT-------G----------EFIRNLVTLESGGSGGVVW  309 (342)
T ss_dssp             EEEECSTTSCSSCEEEEEEC--SSEEEEEETTS-EEEEEETTT-------C----------CEEEEEEECTTGGGTCEEE
T ss_pred             cccccccceeeeceeecccC--CCeeEEEcCCC-EEEEEECCC-------C----------CEEEEEecccCCCCCCCEE
Confidence            887765   55677777775  57999999966 599999965       4          46666643   23445799


Q ss_pred             EEEEccCCCEEEEEeCCCc----EEEEeCCC
Q 004255          436 DICFSHYSQWIAIVSSKGT----CHVFVLSP  462 (765)
Q Consensus       436 slaFSpDg~~Las~S~dgT----VhIwdl~~  462 (765)
                      +++|+||+.+||+|+.|||    +++||++.
T Consensus       310 ~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         310 RIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999999999999997    99999864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=3.8e-20  Score=197.40  Aligned_cols=261  Identities=11%  Similarity=0.132  Sum_probs=172.3

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCE
Q 004255           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF  132 (765)
Q Consensus        56 ~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~--~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpL  132 (765)
                      .|.|..+.|+.       +++.|++|..+| ++|||++. ++  +...+.+|+++|.+|++.|+.             .+
T Consensus         7 ~~pIt~~~~s~-------dg~~la~~~~~~~i~iw~~~~-~~~~~~~~l~gH~~~V~~l~fsp~~-------------~~   65 (371)
T d1k8kc_           7 VEPISCHAWNK-------DRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDS-------------NR   65 (371)
T ss_dssp             SSCCCEEEECT-------TSSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTT-------------TE
T ss_pred             CCCeEEEEECC-------CCCEEEEEeCCCEEEEEECCC-CCEEEEEEecCCCCCEEEEEECCCC-------------CE
Confidence            36688888866       367899998887 99999963 43  456678899999999999752             36


Q ss_pred             EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCCEEEEEecC--CeEEE
Q 004255          133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSP--RIVAV  207 (765)
Q Consensus       133 Lavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~---~s~V~sV~~s~--~~LaV  207 (765)
                      |++++.                                 +++|+|||+.+++....+.+   ...|.+++++|  +.|++
T Consensus        66 l~s~s~---------------------------------D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~  112 (371)
T d1k8kc_          66 IVTCGT---------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV  112 (371)
T ss_dssp             EEEEET---------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEC---------------------------------CCeEEEEeeccccccccccccccccccccccccccccccee
Confidence            665321                                 36899999999887777654   35899999987  67777


Q ss_pred             Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255          208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (765)
Q Consensus       208 ~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~  284 (765)
                      +. ++.|++|+.........+.....+.         ......++++|  ++||.++.+..+     ..|+.....    
T Consensus       113 ~s~d~~i~i~~~~~~~~~~~~~~~~~~~---------~~~v~~v~~~p~~~~l~s~s~D~~v-----~v~~~~~~~----  174 (371)
T d1k8kc_         113 GSGSRVISICYFEQENDWWVCKHIKKPI---------RSTVLSLDWHPNSVLLAAGSCDFKC-----RIFSAYIKE----  174 (371)
T ss_dssp             EETTSSEEEEEEETTTTEEEEEEECTTC---------CSCEEEEEECTTSSEEEEEETTSCE-----EEEECCCTT----
T ss_pred             ecccCcceeeeeeccccccccccccccc---------ccccccccccccccceeccccCcEE-----EEEeeccCc----
Confidence            65 4579999987766555444321110         00123466766  566666543210     011111000    


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~  364 (765)
                                          .        ..     .+.        ...+                 ..+...+..+..
T Consensus       175 --------------------~--------~~-----~~~--------~~~~-----------------~~~~~~~~~~~~  196 (371)
T d1k8kc_         175 --------------------V--------EE-----RPA--------PTPW-----------------GSKMPFGELMFE  196 (371)
T ss_dssp             --------------------T--------SC-----CCC--------CBTT-----------------BSCCCTTCEEEE
T ss_pred             --------------------c--------cc-----ccc--------cccc-----------------cccccceeeeee
Confidence                                0        00     000        0000                 000122456677


Q ss_pred             eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 004255          365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ  444 (765)
Q Consensus       365 ~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~  444 (765)
                      +.+|...|.+++|+|+|++||+++.|+ .|++||+..       +          ..+..+..  +...|.+++|+||++
T Consensus       197 ~~~~~~~v~~~~~s~~g~~l~s~~~d~-~i~iwd~~~-------~----------~~~~~~~~--~~~~v~s~~fs~d~~  256 (371)
T d1k8kc_         197 SSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADK-------K----------MAVATLAS--ETLPLLAVTFITESS  256 (371)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTT-EEEEEEGGG-------T----------TEEEEEEC--SSCCEEEEEEEETTE
T ss_pred             ccCccCcEEEEEeecccccccccccCC-cceEEeeec-------c----------cceeeeec--ccccceeeeecCCCC
Confidence            889999999999999999999999965 599999864       2          46666653  345799999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCc
Q 004255          445 WIAIVSSKGTCHVFVLSPFGGDS  467 (765)
Q Consensus       445 ~Las~S~dgTVhIwdl~~~gg~~  467 (765)
                      +||+|+ |+.+++|......+..
T Consensus       257 ~la~g~-d~~~~~~~~~~~~~~~  278 (371)
T d1k8kc_         257 LVAAGH-DCFPVLFTYDSAAGKL  278 (371)
T ss_dssp             EEEEET-TSSCEEEEEETTTTEE
T ss_pred             EEEEEc-CCceEEEEeeCCCceE
Confidence            888765 7778888876654443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.86  E-value=5.9e-20  Score=187.43  Aligned_cols=242  Identities=11%  Similarity=0.052  Sum_probs=167.5

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEee-eeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELV-SKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ell-s~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..+|++.|..+.|..       +++.|++|..+| ++|||++ .++....+ ..|.++|.++++.|+.            
T Consensus         8 ~~GH~~~V~~l~~s~-------dg~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~~h~~~v~~v~~~~~g------------   67 (299)
T d1nr0a2           8 RYGHNKAITALSSSA-------DGKTLFSADAEGHINSWDIS-TGISNRVFPDVHATMITGIKTTSKG------------   67 (299)
T ss_dssp             ECCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETT-TCCEEECSSCSCSSCEEEEEECTTS------------
T ss_pred             cCCCCCCcEEEEECC-------CCCEEEEEcCCCeEEEEECC-CCcEEEEEcCCCCCcEEEEEeeccc------------
Confidence            567999999999965       256888888876 9999995 46666665 4678999999998741            


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE----EEEEeCCCCEEEEEecC--C
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY----EHVLRFRSSVCMVRCSP--R  203 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~----v~tL~~~s~V~sV~~s~--~  203 (765)
                       .+++ ++.                                 +++|++|++.....    .........+..+.+++  +
T Consensus        68 -~~~~-~~~---------------------------------d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  112 (299)
T d1nr0a2          68 -DLFT-VSW---------------------------------DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD  112 (299)
T ss_dssp             -CEEE-EET---------------------------------TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred             -eeec-ccc---------------------------------eeeEEEeccCCccccccccccccccccccccccccccc
Confidence             2443 332                                 25899999864331    12223556788888876  6


Q ss_pred             eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCC
Q 004255          204 IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (765)
Q Consensus       204 ~LaV~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s  283 (765)
                      +++++.++.|++|+...   ...+.....              ...++++|       +.                    
T Consensus       113 ~~~~~~~~~i~~~~~~~---~~~~~~~~~--------------~~~~~~s~-------~~--------------------  148 (299)
T d1nr0a2         113 IAVAACYKHIAIYSHGK---LTEVPISYN--------------SSCVALSN-------DK--------------------  148 (299)
T ss_dssp             CEEEEESSEEEEEETTE---EEEEECSSC--------------EEEEEECT-------TS--------------------
T ss_pred             ccccccccccccccccc---ccccccccc--------------cccccccc-------cc--------------------
Confidence            88888889999998532   122211100              11223322       10                    


Q ss_pred             CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE
Q 004255          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS  363 (765)
Q Consensus       284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~  363 (765)
                             .                                                 .++.+..+|.|++||+.+++...
T Consensus       149 -------~-------------------------------------------------~l~~g~~dg~i~~~d~~~~~~~~  172 (299)
T d1nr0a2         149 -------Q-------------------------------------------------FVAVGGQDSKVHVYKLSGASVSE  172 (299)
T ss_dssp             -------C-------------------------------------------------EEEEEETTSEEEEEEEETTEEEE
T ss_pred             -------c-------------------------------------------------ccccccccccccccccccccccc
Confidence                   0                                                 01123568899999998877544


Q ss_pred             -EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 004255          364 -QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY  442 (765)
Q Consensus       364 -~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD  442 (765)
                       ....|..+|.+++|+|+|++|++++.+|. |++||+.....              ...+..+ .+ +...|.+++|+||
T Consensus       173 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~--------------~~~~~~~-~~-h~~~v~~l~~s~~  235 (299)
T d1nr0a2         173 VKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFE--------------LAHTNSW-TF-HTAKVACVSWSPD  235 (299)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTTE--------------ESCCCCC-CC-CSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccc--------------ccccccc-cc-ccccccccccccc
Confidence             35589999999999999999999999775 99999854100              0011112 22 3457999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCC
Q 004255          443 SQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       443 g~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      +++|++++.||+|+|||+.....
T Consensus       236 ~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         236 NVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             SSEEEEEETTSCEEEEETTCTTS
T ss_pred             ccceEEEcCCCEEEEEECCCCCc
Confidence            99999999999999999987544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.6e-19  Score=188.49  Aligned_cols=232  Identities=13%  Similarity=0.132  Sum_probs=163.7

Q ss_pred             CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        74 ~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      .++.|++|..+| +++||.. .++....+..|.++|..+.+.++.             ..+++...              
T Consensus       132 ~~~~l~s~~~dg~v~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~-------------~~~~~~~~--------------  183 (388)
T d1erja_         132 DGKFLATGAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSG-------------DKLVSGSG--------------  183 (388)
T ss_dssp             TSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTS-------------SEEEEEET--------------
T ss_pred             CCCcceeccccccccccccc-cccccccccccccccccccccccc-------------cccccccc--------------
Confidence            367888888887 9999995 566777788889999999988642             24443221              


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEE
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVL  228 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~  228 (765)
                                         .+.|++||+++...+...........+.+.+   ++|+++. ++.|++||+.+++....+.
T Consensus       184 -------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  244 (388)
T d1erja_         184 -------------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD  244 (388)
T ss_dssp             -------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             -------------------ceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeec
Confidence                               3689999999999999888888777777765   6777765 5679999999998777664


Q ss_pred             ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255          229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (765)
Q Consensus       229 t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G  308 (765)
                      ..... ...+     ......++++|       +.                                             
T Consensus       245 ~~~~~-~~~h-----~~~v~~l~~s~-------~~---------------------------------------------  266 (388)
T d1erja_         245 SENES-GTGH-----KDSVYSVVFTR-------DG---------------------------------------------  266 (388)
T ss_dssp             -------CCC-----SSCEEEEEECT-------TS---------------------------------------------
T ss_pred             ccccc-ccCC-----CCCEEEEEECC-------CC---------------------------------------------
Confidence            31110 0000     00011222222       00                                             


Q ss_pred             cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC------------cEEEEeccCCCCeEEEE
Q 004255          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------AIISQFKAHTSPISALC  376 (765)
Q Consensus       309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~------------~~i~~~~aH~~~IsaLa  376 (765)
                                                 +    .++.+..||.|+|||+.++            .....+..|...|.+++
T Consensus       267 ---------------------------~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  315 (388)
T d1erja_         267 ---------------------------Q----SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA  315 (388)
T ss_dssp             ---------------------------S----EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred             ---------------------------C----EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEE
Confidence                                       0    0123456788888888654            34556678999999999


Q ss_pred             ECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE------EccCCCEEEEEe
Q 004255          377 FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC------FSHYSQWIAIVS  450 (765)
Q Consensus       377 FSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sla------FSpDg~~Las~S  450 (765)
                      |+|+|++|++|+.|| .|+|||+.+       +          .++..+. |+ ...|.+++      |+||+++||+++
T Consensus       316 ~s~~~~~l~sg~~dg-~i~vwd~~~-------~----------~~~~~l~-~H-~~~V~~~~~~~~~~~spd~~~l~s~s  375 (388)
T d1erja_         316 TTQNDEYILSGSKDR-GVLFWDKKS-------G----------NPLLMLQ-GH-RNSVISVAVANGSSLGPEYNVFATGS  375 (388)
T ss_dssp             ECGGGCEEEEEETTS-EEEEEETTT-------C----------CEEEEEE-CC-SSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             ECCCCCEEEEEeCCC-EEEEEECCC-------C----------cEEEEEe-CC-CCCEEEEEEecCcccCCCCCEEEEEe
Confidence            999999999999966 599999965       3          4677775 43 45688887      568999999999


Q ss_pred             CCCcEEEEeCC
Q 004255          451 SKGTCHVFVLS  461 (765)
Q Consensus       451 ~dgTVhIwdl~  461 (765)
                      .||+|+||+++
T Consensus       376 ~Dg~I~iW~~~  386 (388)
T d1erja_         376 GDCKARIWKYK  386 (388)
T ss_dssp             TTSEEEEEEEE
T ss_pred             CCCEEEEEeee
Confidence            99999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.1e-19  Score=190.81  Aligned_cols=245  Identities=13%  Similarity=0.046  Sum_probs=167.5

Q ss_pred             CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcce-------EeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 004255           56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFN-------ELVSKRDGPVSFLQMQPFPVKDDGCEGFR  127 (765)
Q Consensus        56 ~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~-------ells~~dg~V~~v~~lP~p~~~~~~d~f~  127 (765)
                      ...|..+.|...     ..+++|++|..+| ++|||+.......       ..+..+.++|..+.+.|+.          
T Consensus        63 ~~~v~~v~fsP~-----~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~----------  127 (325)
T d1pgua1          63 SSVVTTVKFSPI-----KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG----------  127 (325)
T ss_dssp             TSCEEEEEECSS-----TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS----------
T ss_pred             CCCEEEEEEeeC-----CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC----------
Confidence            467889999541     2357899998877 9999995432221       2234567899999998642          


Q ss_pred             ccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CCEEEEEecC---C
Q 004255          128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---R  203 (765)
Q Consensus       128 ~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~---~  203 (765)
                         ..|++++.+.                               .+.+++|+..+++++.++..+ ..|.++++++   .
T Consensus       128 ---~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1         128 ---RRLCVVGEGR-------------------------------DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             ---SEEEEEECCS-------------------------------SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             ---Cccceeeccc-------------------------------cceEEEEeecccccceeeeecccccccccccccccc
Confidence               2555544321                               257999999999999999854 6899999987   2


Q ss_pred             eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCC
Q 004255          204 IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV  282 (765)
Q Consensus       204 ~LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~  282 (765)
                      +++++ .++.|++||+.+++...++.++....         . ....++|+|       +                    
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~---------~-~v~~v~~~p-------d--------------------  216 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG---------S-FVRDVEFSP-------D--------------------  216 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTT---------C-CEEEEEECS-------T--------------------
T ss_pred             eEEEeecccccccccccccccceecccccCCC---------C-ccEEeeecc-------c--------------------
Confidence            45544 46789999999887766665432210         0 012233322       1                    


Q ss_pred             CCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 004255          283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII  362 (765)
Q Consensus       283 s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i  362 (765)
                             .+.+                                                ++.+..||.|+|||+.+++.+
T Consensus       217 -------~~~~------------------------------------------------l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         217 -------SGEF------------------------------------------------VITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             -------TCCE------------------------------------------------EEEEETTCCEEEEETTTCCEE
T ss_pred             -------ccee------------------------------------------------ccccccccceeeeeecccccc
Confidence                   0110                                                123456899999999999999


Q ss_pred             EEeccCCCCeEEEEEC---CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc--EEEE
Q 004255          363 SQFKAHTSPISALCFD---PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT--IQDI  437 (765)
Q Consensus       363 ~~~~aH~~~IsaLaFS---pdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~--I~sl  437 (765)
                      ..|++|..++..+.|+   |||++|+|++.|+ .|+|||+..       +          +.+..+..+.+...  ..++
T Consensus       242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~-~i~iwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~  303 (325)
T d1pgua1         242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADA-TIRVWDVTT-------S----------KCVQKWTLDKQQLGNQQVGV  303 (325)
T ss_dssp             EECCBTTBCCCSCEEEEEESSSSEEEEEETTS-EEEEEETTT-------T----------EEEEEEECCTTCGGGCEEEE
T ss_pred             ccccccccccccceeeeeccCCCEEEEEeCCC-eEEEEECCC-------C----------CEEEEEEecCCcccCeEEEE
Confidence            9999999988777776   7999999999966 599999965       3          45555543322222  3344


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeC
Q 004255          438 CFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       438 aFSpDg~~Las~S~dgTVhIwdl  460 (765)
                      .|.++ .+|+++|.||+|+||||
T Consensus       304 ~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         304 VATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEET-TEEEEEETTSCEEEEET
T ss_pred             EECCC-CEEEEEECCCEEEEEEC
Confidence            44444 47899999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.1e-18  Score=174.78  Aligned_cols=255  Identities=16%  Similarity=0.183  Sum_probs=177.0

Q ss_pred             ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (765)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~  176 (765)
                      ....|.+|.++|.+|++.|+             .++||+.+.                                 +++|+
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~-------------~~~l~s~s~---------------------------------Dg~i~   42 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPV-------------FSVMVSASE---------------------------------DATIK   42 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSS-------------SSEEEEEES---------------------------------SSCEE
T ss_pred             ccEEEcCCCCCeEEEEEcCC-------------CCEEEEEeC---------------------------------CCeEE
Confidence            44578899999999999874             347765321                                 36899


Q ss_pred             EEECCCCeEEEEEeCC-CCEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEE
Q 004255          177 FYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV  252 (765)
Q Consensus       177 lWdlktg~~v~tL~~~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Al  252 (765)
                      |||+.+++++++++.+ ..|.++++++  .+++.+.. ..+.+|+....+....+..+...             ...+.+
T Consensus        43 iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  109 (317)
T d1vyhc1          43 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN-------------VSSVSI  109 (317)
T ss_dssp             EEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC-------------EEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccccccccc-------------ceeeec
Confidence            9999999999999865 6899999987  56666554 56899998887765555444331             234555


Q ss_pred             cc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCcc
Q 004255          253 GP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS  330 (765)
Q Consensus       253 sp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s  330 (765)
                      .+  +.|++++.+..+     ..|+..+.            ..+                +++..+..      ......
T Consensus       110 ~~~~~~~~~~~~d~~~-----~~~~~~~~------------~~~----------------~~~~~~~~------~~~~~~  150 (317)
T d1vyhc1         110 MPNGDHIVSASRDKTI-----KMWEVQTG------------YCV----------------KTFTGHRE------WVRMVR  150 (317)
T ss_dssp             CSSSSEEEEEETTSEE-----EEEETTTC------------CEE----------------EEEECCSS------CEEEEE
T ss_pred             cCCCceEEeeccCcce-----eEeecccc------------eee----------------eEEccCCC------cceeee
Confidence            55  566666554211     11221110            000                11111110      001111


Q ss_pred             CCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC--------------------CEEEEEEcC
Q 004255          331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG--------------------TLLVTASVY  390 (765)
Q Consensus       331 ~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG--------------------~lLATaS~d  390 (765)
                      ++++..    .++.+..||.|++||+.+++.+..+.+|...|.+++|+|++                    .++++++.|
T Consensus       151 ~~~~~~----~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  226 (317)
T d1vyhc1         151 PNQDGT----LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  226 (317)
T ss_dssp             ECTTSS----EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             cccCCC----EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCC
Confidence            222222    24467789999999999999999999999999999998864                    478999996


Q ss_pred             CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccc
Q 004255          391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ  470 (765)
Q Consensus       391 Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~  470 (765)
                      + .|++||+..       +          ..+.++. + +...|.+++|+||+++|++++.||+|+|||+........+.
T Consensus       227 ~-~i~~~~~~~-------~----------~~~~~~~-~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  286 (317)
T d1vyhc1         227 K-TIKMWDVST-------G----------MCLMTLV-G-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  286 (317)
T ss_dssp             S-EEEEEETTT-------T----------EEEEEEE-C-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             C-EEEEEECCC-------C----------cEEEEEe-C-CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc
Confidence            6 599999865       3          5666765 4 34579999999999999999999999999998766556666


Q ss_pred             ccc
Q 004255          471 TLS  473 (765)
Q Consensus       471 ~h~  473 (765)
                      .|.
T Consensus       287 ~h~  289 (317)
T d1vyhc1         287 AHE  289 (317)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.8e-18  Score=170.17  Aligned_cols=277  Identities=13%  Similarity=0.138  Sum_probs=175.8

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      ..++...|..+.||         ++.|++|..+| ++|||++ .+++..++..|.++|.+|.+.             ++ 
T Consensus        11 ~~~~~~~V~c~~~d---------~~~l~sgs~Dg~i~vWd~~-~~~~~~~l~~H~~~V~~v~~~-------------~~-   66 (293)
T d1p22a2          11 RSETSKGVYCLQYD---------DQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQYD-------------ER-   66 (293)
T ss_dssp             CCSSCCCEEEEECC---------SSEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEECC-------------SS-
T ss_pred             cCCCCCCEEEEEEc---------CCEEEEEeCCCeEEEEECC-CCcEEEEEecCCCCEeeeecc-------------cc-
Confidence            44566778766664         34788888877 9999995 578888999999999988753             22 


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-CEEEEEecCCeEEEE-
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVG-  208 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-~V~sV~~s~~~LaV~-  208 (765)
                       +|++.+.                                 +++|++|++.++.......... ...........++++ 
T Consensus        67 -~l~s~s~---------------------------------D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (293)
T d1p22a2          67 -VIITGSS---------------------------------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS  112 (293)
T ss_dssp             -EEEEEET---------------------------------TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEE
T ss_pred             -eeecccc---------------------------------cccccccccccccccccccccccccccccccccceeecc
Confidence             6654221                                 3689999999998888776654 444555555555554 


Q ss_pred             eCCeEEEEECCCCceeEEEE---ecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCC
Q 004255          209 LATQIYCFDALTLENKFSVL---TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS  285 (765)
Q Consensus       209 ~~~~I~iwD~~t~~~l~tl~---t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s  285 (765)
                      ..+.+.+||..+........   .+...             ...+.+.+..+...+.+..+     ..|+..+.      
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~~s~d~~i-----~~~d~~~~------  168 (293)
T d1p22a2         113 KDRSIAVWDMASPTDITLRRVLVGHRAA-------------VNVVDFDDKYIVSASGDRTI-----KVWNTSTC------  168 (293)
T ss_dssp             TTSCEEEEECSSSSCCEEEEEECCCSSC-------------EEEEEEETTEEEEEETTSEE-----EEEETTTC------
T ss_pred             cccceeEeeccccccccccccccccccc-------------cccceecccccccccCCCce-----eeecCCCC------
Confidence            45679999998776544333   34442             23445555555555544211     11211110      


Q ss_pred             cCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 004255          286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF  365 (765)
Q Consensus       286 ~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~  365 (765)
                            .++                +++.++...      .....++      ...++.+..||.|+|||+.+.+.+..+
T Consensus       169 ------~~~----------------~~~~~~~~~------v~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~  214 (293)
T d1p22a2         169 ------EFV----------------RTLNGHKRG------IACLQYR------DRLVVSGSSDNTIRLWDIECGACLRVL  214 (293)
T ss_dssp             ------CEE----------------EEEECCSSC------EEEEEEE------TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ------cEE----------------EEEcccccc------cccccCC------CCeEEEecCCCEEEEEecccceeeeee
Confidence                  000                111111000      0000000      112346678999999999999999999


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 004255          366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW  445 (765)
Q Consensus       366 ~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~  445 (765)
                      .+|...|.+  +++++.+|++++.||. |+|||+.......        .......+..+. ++ ...|++++|  |+++
T Consensus       215 ~~~~~~v~~--~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~--------~~~~~~~~~~~~-~H-~~~V~~v~~--d~~~  279 (293)
T d1p22a2         215 EGHEELVRC--IRFDNKRIVSGAYDGK-IKVWDLVAALDPR--------APAGTLCLRTLV-EH-SGRVFRLQF--DEFQ  279 (293)
T ss_dssp             CCCSSCEEE--EECCSSEEEEEETTSC-EEEEEHHHHTSTT--------SCTTTTEEEEEC-CC-SSCCCCEEE--CSSC
T ss_pred             cccceeeee--ccccceEEEEEcCCCE-EEEEECCCCcccc--------ccCCceeeEEec-CC-CCCEEEEEE--cCCE
Confidence            999998875  5567899999999775 9999974310000        000113555553 43 456899998  5678


Q ss_pred             EEEEeCCCcEEEEe
Q 004255          446 IAIVSSKGTCHVFV  459 (765)
Q Consensus       446 Las~S~dgTVhIwd  459 (765)
                      |+++|.||+|+|||
T Consensus       280 l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         280 IVSSSHDDTILIWD  293 (293)
T ss_dssp             EEECCSSSEEEEEC
T ss_pred             EEEEecCCEEEEeC
Confidence            99999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.81  E-value=8.6e-18  Score=171.15  Aligned_cols=236  Identities=11%  Similarity=0.140  Sum_probs=158.7

Q ss_pred             CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCC--cceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 004255           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDAS--NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        53 ~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~qVWdv~~~g--~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      +.+.+.|..+.|..       .++++++|.++.+++|++....  ........+...+..+.+.|+.             
T Consensus        52 ~~h~~~v~~v~~~~-------~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-------------  111 (299)
T d1nr0a2          52 DVHATMITGIKTTS-------KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-------------  111 (299)
T ss_dssp             CSCSSCEEEEEECT-------TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-------------
T ss_pred             CCCCCcEEEEEeec-------cceeecccceeeEEEeccCCcccccccccccccccccccccccccc-------------
Confidence            45677888888854       2568888988899999985432  1233445566788888887641             


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG  208 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~  208 (765)
                      .++++ ..                                 .+.+++|+...   ...+.....+..+++++  ++|+++
T Consensus       112 ~~~~~-~~---------------------------------~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2         112 DIAVA-AC---------------------------------YKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             SCEEE-EE---------------------------------SSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             ccccc-cc---------------------------------ccccccccccc---ccccccccccccccccccccccccc
Confidence            24433 22                                 24799999643   33445556777888877  678776


Q ss_pred             e-CCeEEEEECCCCceeEEE-EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCC
Q 004255          209 L-ATQIYCFDALTLENKFSV-LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSP  284 (765)
Q Consensus       209 ~-~~~I~iwD~~t~~~l~tl-~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~  284 (765)
                      . ++.|++||+.+.+..... ..|+.+             ...++++|  ++|                           
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l---------------------------  194 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAE-------------ITSVAFSNNGAFL---------------------------  194 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSC-------------EEEEEECTTSSEE---------------------------
T ss_pred             ccccccccccccccccccccccccccc-------------ccccccccccccc---------------------------
Confidence            5 467999999887654322 233331             12233322  111                           


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE-
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-  363 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~-  363 (765)
                                                                                +.++.+|.|++||+.++..+. 
T Consensus       195 ----------------------------------------------------------~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         195 ----------------------------------------------------------VATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             ----------------------------------------------------------EEEETTSCEEEEEGGGTTEESC
T ss_pred             ----------------------------------------------------------cccccccccccccccccccccc
Confidence                                                                      123457889999998876543 


Q ss_pred             --EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 004255          364 --QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH  441 (765)
Q Consensus       364 --~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp  441 (765)
                        .+.+|..+|.+|+|+|+|.+||+++.||. |+|||+....     .          ..+ ....+++...|.+++| +
T Consensus       217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~-i~iwd~~~~~-----~----------~~~-~~~~~~~~~~v~~~~~-~  278 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNS-VIVWNMNKPS-----D----------HPI-IIKGAHAMSSVNSVIW-L  278 (299)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTCTT-----S----------CCE-EETTSSTTSCEEEEEE-E
T ss_pred             cccccccccccccccccccccceEEEcCCCE-EEEEECCCCC-----c----------ceE-EEecCCCCCcEEEEEE-C
Confidence              46689999999999999999999999775 9999986520     0          122 2223334445776655 6


Q ss_pred             CCCEEEEEeCCCcEEEEeCC
Q 004255          442 YSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       442 Dg~~Las~S~dgTVhIwdl~  461 (765)
                      |+++|++++.|++|+||||.
T Consensus       279 ~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         279 NETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ETTEEEEEETTSCEEEEECC
T ss_pred             CCCEEEEEeCCCEEEEEecc
Confidence            67899999999999999984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2.6e-18  Score=184.43  Aligned_cols=116  Identities=16%  Similarity=0.197  Sum_probs=94.4

Q ss_pred             ccccCCCCeEEEEECCCCcEEEEe------ccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCcc
Q 004255          342 GADMDNAGIVVVKDFVTRAIISQF------KAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKY  413 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~~i~~~------~aH~~~IsaLaFSpdG~lLATaS~dGt--~IrVWdi~~~~~~~~sG~~~~  413 (765)
                      ++++..||+|+|||+.+++.+..+      .+|..+|.+|+|+|||++||+||.|++  .|+|||+..       |    
T Consensus       198 lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-------g----  266 (393)
T d1sq9a_         198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-------G----  266 (393)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-------C----
T ss_pred             EEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc-------c----
Confidence            346778999999999999877654      469999999999999999999999765  599999965       3    


Q ss_pred             ccCCcceEEEEEe------------cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccccCC
Q 004255          414 DWNSSHVHLYKLH------------RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ  475 (765)
Q Consensus       414 ~~~~s~~~l~~l~------------rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~~~  475 (765)
                            .++..+.            .|| ...|++|+|+|||++|+++|.|++|+|||+.+......+++|...
T Consensus       267 ------~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~  333 (393)
T d1sq9a_         267 ------ERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD  333 (393)
T ss_dssp             ------CEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG
T ss_pred             ------eeeeeeccccccccceeeeecc-cCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCc
Confidence                  2333332            243 456999999999999999999999999999987666778888643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=3.3e-17  Score=169.23  Aligned_cols=262  Identities=11%  Similarity=0.057  Sum_probs=180.5

Q ss_pred             CCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCC
Q 004255           74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL  153 (765)
Q Consensus        74 ~~~vL~~G~~~G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~  153 (765)
                      +++.++.+..+.+.|||++ .+.+.++  .|.+.|..++|+|+.             .+|++++.++             
T Consensus        14 dG~~~a~~~~g~v~v~d~~-~~~~~~~--~~~~~v~~~~~spDg-------------~~l~~~~~~~-------------   64 (360)
T d1k32a3          14 DGDLIAFVSRGQAFIQDVS-GTYVLKV--PEPLRIRYVRRGGDT-------------KVAFIHGTRE-------------   64 (360)
T ss_dssp             GGGCEEEEETTEEEEECTT-SSBEEEC--SCCSCEEEEEECSSS-------------EEEEEEEETT-------------
T ss_pred             CCCEEEEEECCeEEEEECC-CCcEEEc--cCCCCEEEEEECCCC-------------CEEEEEEcCC-------------
Confidence            4778899988889999995 5666665  578899999999862             2566544321             


Q ss_pred             CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEec
Q 004255          154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTY  230 (765)
Q Consensus       154 ~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~  230 (765)
                                        ...|++||+++++..........|.+++++|  ++|+++. +..+++||+.+++....+..+
T Consensus        65 ------------------g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1k32a3          65 ------------------GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR  126 (360)
T ss_dssp             ------------------EEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             ------------------CCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecc
Confidence                              1479999999998877667778999999998  5777655 457999999999887777655


Q ss_pred             CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcc
Q 004255          231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG  308 (765)
Q Consensus       231 p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G  308 (765)
                      ...             ...++++|  ++||++.....                         .                 
T Consensus       127 ~~~-------------~~~~~~spdg~~la~~~~~~~-------------------------~-----------------  151 (360)
T d1k32a3         127 EAM-------------ITDFTISDNSRFIAYGFPLKH-------------------------G-----------------  151 (360)
T ss_dssp             SSC-------------CCCEEECTTSCEEEEEEEECS-------------------------S-----------------
T ss_pred             ccc-------------ccchhhccceeeeeeeccccc-------------------------c-----------------
Confidence            431             24578887  78888653200                         0                 


Q ss_pred             cceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 004255          309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS  388 (765)
Q Consensus       309 ~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS  388 (765)
                                                       ...+..++.+++||+.+++.. .+..|...+..++|+|||++|++++
T Consensus       152 ---------------------------------~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         152 ---------------------------------ETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             ---------------------------------TTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             ---------------------------------ceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEe
Confidence                                             001235678999999987654 4556778899999999999999999


Q ss_pred             cCCCEEEEEeCCCCcc-------------c-C--------CCC------C---Cc-------cccCC-c-----------
Q 004255          389 VYGNNINIFRIMPSCM-------------R-S--------GSG------N---HK-------YDWNS-S-----------  418 (765)
Q Consensus       389 ~dGt~IrVWdi~~~~~-------------~-~--------~sG------~---~~-------~~~~~-s-----------  418 (765)
                      .++. +++||......             . .        ..+      .   ..       .+... .           
T Consensus       198 ~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (360)
T d1k32a3         198 YRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI  276 (360)
T ss_dssp             SCCC-CCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE
T ss_pred             CCCc-eEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCc
Confidence            8665 88998643100             0 0        000      0   00       00000 0           


Q ss_pred             ----------------------ceEEEEEeccc---ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCcccccc
Q 004255          419 ----------------------HVHLYKLHRGI---TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL  472 (765)
Q Consensus       419 ----------------------~~~l~~l~rG~---~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h  472 (765)
                                            ...++.+..+.   +...|.+++|||||++|++++.||+|+|||++..+.+..+..+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d  355 (360)
T d1k32a3         277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD  355 (360)
T ss_dssp             EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCC
T ss_pred             eEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEec
Confidence                                  01112211110   1124889999999999999999999999999987777666555

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.6e-17  Score=173.80  Aligned_cols=212  Identities=14%  Similarity=0.122  Sum_probs=137.8

Q ss_pred             CEEEEEECCCCeE---EEEEe---CCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCcc
Q 004255          173 TAVRFYSFQSHCY---EHVLR---FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAV  241 (765)
Q Consensus       173 ~tV~lWdlktg~~---v~tL~---~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~--~l~tl~t~p~p~~~~~~~~  241 (765)
                      ++|+|||+.+++.   +..+.   +.+.|.+|++++  ++|+++. ++.|++||+...+  ....+..+...        
T Consensus        72 g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------  143 (337)
T d1gxra_          72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA--------  143 (337)
T ss_dssp             SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC--------
T ss_pred             CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccc--------
Confidence            5899999976543   23333   346899999987  6777764 5689999987543  44444444331        


Q ss_pred             ccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccc
Q 004255          242 GINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE  319 (765)
Q Consensus       242 ~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~  319 (765)
                           ...++++|  .+|+.++.+..+     ..++..+.            .+.                +....+.  
T Consensus       144 -----v~~~~~~~~~~~l~s~~~d~~i-----~~~~~~~~------------~~~----------------~~~~~~~--  183 (337)
T d1gxra_         144 -----CYALAISPDSKVCFSCCSDGNI-----AVWDLHNQ------------TLV----------------RQFQGHT--  183 (337)
T ss_dssp             -----EEEEEECTTSSEEEEEETTSCE-----EEEETTTT------------EEE----------------EEECCCS--
T ss_pred             -----cccccccccccccccccccccc-----cccccccc------------ccc----------------ccccccc--
Confidence                 24567777  677776554211     01111100            000                0000000  


Q ss_pred             cCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 004255          320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (765)
Q Consensus       320 ~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi  399 (765)
                          .......++++..    .+..+..+|.|++||+.+++.+..+ .|..+|.+++|+|++.+|++++.+|. |++||+
T Consensus       184 ----~~v~~l~~s~~~~----~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~  253 (337)
T d1gxra_         184 ----DGASCIDISNDGT----KLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHV  253 (337)
T ss_dssp             ----SCEEEEEECTTSS----EEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSC-EEEEET
T ss_pred             ----ccccccccccccc----ccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccc-cccccc
Confidence                0011111122211    2345678999999999999987766 58899999999999999999999765 999999


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       400 ~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      ..       +           ..+... + +...|.+++|+|||++|++++.||+|+|||+..
T Consensus       254 ~~-------~-----------~~~~~~-~-~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         254 NK-------P-----------DKYQLH-L-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             TS-------S-----------CEEEEC-C-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cc-------c-----------cccccc-c-cccccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            54       2           223332 2 345799999999999999999999999999875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=1.5e-17  Score=176.93  Aligned_cols=200  Identities=14%  Similarity=0.110  Sum_probs=133.7

Q ss_pred             CEEEEEECCCCe--EEEEEeC-CCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEe--cCCcccCCCCccccc
Q 004255          173 TAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT--YPVPQLAGQGAVGIN  244 (765)
Q Consensus       173 ~tV~lWdlktg~--~v~tL~~-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t--~p~p~~~~~~~~~~~  244 (765)
                      +.|+|||+.+++  +++.|+. .++|.+|+|+|  ++|+++. ++.|++||+.+++....+..  +..            
T Consensus        29 ~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~------------   96 (371)
T d1k8kc_          29 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR------------   96 (371)
T ss_dssp             SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS------------
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccc------------
Confidence            689999998886  5667765 46999999986  6777665 56899999987765444332  111            


Q ss_pred             cccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255          245 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (765)
Q Consensus       245 ~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p  322 (765)
                       ....++++|  ++|+                                                                
T Consensus        97 -~v~~i~~~p~~~~l~----------------------------------------------------------------  111 (371)
T d1k8kc_          97 -AARCVRWAPNEKKFA----------------------------------------------------------------  111 (371)
T ss_dssp             -CEEEEEECTTSSEEE----------------------------------------------------------------
T ss_pred             -cccccccccccccce----------------------------------------------------------------
Confidence             112333332  1221                                                                


Q ss_pred             CCCCCCccCCCccccccccccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 004255          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR  398 (765)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWd  398 (765)
                                           .+..+|+|++|++....    .......|...|.+++|+|+|++||+|+.||+ |+|||
T Consensus       112 ---------------------~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~-v~v~~  169 (371)
T d1k8kc_         112 ---------------------VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-CRIFS  169 (371)
T ss_dssp             ---------------------EEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEE
T ss_pred             ---------------------eecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE-EEEEe
Confidence                                 23457788898876654    23446689999999999999999999999775 99999


Q ss_pred             CCCCcccCCCCCCcccc-CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCccccccc
Q 004255          399 IMPSCMRSGSGNHKYDW-NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS  473 (765)
Q Consensus       399 i~~~~~~~~sG~~~~~~-~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg~~~~~~h~  473 (765)
                      +................ ......+++.. + +...|.+++|+|||++|++++.|++|++||+........+..|.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         170 AYIKEVEERPAPTPWGSKMPFGELMFESS-S-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  243 (371)
T ss_dssp             CCCTTTSCCCCCBTTBSCCCTTCEEEECC-C-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             eccCccccccccccccccccceeeeeecc-C-ccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc
Confidence            85421100000000000 01113444432 2 34579999999999999999999999999998765555556664

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.4e-17  Score=174.48  Aligned_cols=244  Identities=13%  Similarity=0.086  Sum_probs=159.0

Q ss_pred             CCCcEEEEEEeeccCCCCCCCeEEEEEecCcE--EEEEccCC-CcceEeeeec-cCCEEEEEEecCCCCCCCCCCccccC
Q 004255           55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGF--QVLDVEDA-SNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKLH  130 (765)
Q Consensus        55 ~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G~--qVWdv~~~-g~~~ells~~-dg~V~~v~~lP~p~~~~~~d~f~~sr  130 (765)
                      .+.+...+.|+.       .+..|+.+..+..  +.||.... ......+.+| ..+|.+|++.|..           +.
T Consensus        16 ~~~~~t~l~~~~-------~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~-----------~g   77 (325)
T d1pgua1          16 QRNFTTHLSYDP-------TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK-----------GS   77 (325)
T ss_dssp             CTTCCCCCEEET-------TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSST-----------TC
T ss_pred             CCCCeEEEEECC-------CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCC-----------CC
Confidence            344555666765       2457777877664  55654221 1122334455 4689999999842           22


Q ss_pred             CEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE--------e-CCCCEEEEEec
Q 004255          131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL--------R-FRSSVCMVRCS  201 (765)
Q Consensus       131 pLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL--------~-~~s~V~sV~~s  201 (765)
                      .+||.  ++                               .+++|+|||+..++....+        . +.++|.+|+++
T Consensus        78 ~~las--gs-------------------------------~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s  124 (325)
T d1pgua1          78 QYLCS--GD-------------------------------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD  124 (325)
T ss_dssp             CEEEE--EE-------------------------------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC
T ss_pred             CEEEE--Ee-------------------------------CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEEC
Confidence            35554  22                               1369999999765432222        2 34689999998


Q ss_pred             C--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCC
Q 004255          202 P--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN  276 (765)
Q Consensus       202 ~--~~LaV~~---~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~  276 (765)
                      +  +.|+++.   +..+++|+..+++++.++..|..+             ...++++|       ...            
T Consensus       125 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~~------------  172 (325)
T d1pgua1         125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQR-------------INACHLKQ-------SRP------------  172 (325)
T ss_dssp             TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSC-------------EEEEEECS-------SSS------------
T ss_pred             CCCCccceeeccccceEEEEeecccccceeeeecccc-------------cccccccc-------ccc------------
Confidence            7  5665543   335999999999888887766542             22344422       100            


Q ss_pred             CCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 004255          277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF  356 (765)
Q Consensus       277 lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl  356 (765)
                                     .+                                                ...+..||.|++||+
T Consensus       173 ---------------~~------------------------------------------------~~~~~~d~~v~~~d~  189 (325)
T d1pgua1         173 ---------------MR------------------------------------------------SMTVGDDGSVVFYQG  189 (325)
T ss_dssp             ---------------CE------------------------------------------------EEEEETTTEEEEEET
T ss_pred             ---------------ce------------------------------------------------EEEeecccccccccc
Confidence                           00                                                012346889999999


Q ss_pred             CCCcEEEEe---ccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-
Q 004255          357 VTRAIISQF---KAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-  431 (765)
Q Consensus       357 ~s~~~i~~~---~aH~~~IsaLaFSpd-G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~-  431 (765)
                      ...+....+   .+|...|.+++|+|+ +.+||+++.||. |+|||+.+       +          ..+..+. ++.. 
T Consensus       190 ~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~-------~----------~~~~~l~-~~~~~  250 (325)
T d1pgua1         190 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKS-------G----------EFLKYIE-DDQEP  250 (325)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTT-------C----------CEEEECC-BTTBC
T ss_pred             cccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeecc-------c----------ccccccc-ccccc
Confidence            887765554   467889999999996 789999999775 99999865       3          4566664 3322 


Q ss_pred             --ccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          432 --ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       432 --a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                        ..+++++| |||++|++++.|++|+|||+....
T Consensus       251 v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         251 VQGGIFALSW-LDSQKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             CCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cccceeeeec-cCCCEEEEEeCCCeEEEEECCCCC
Confidence              12444444 689999999999999999998643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.7e-16  Score=161.69  Aligned_cols=258  Identities=15%  Similarity=0.170  Sum_probs=166.2

Q ss_pred             CCCCCCcE-EEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 004255           52 SEDLKDQV-TWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL  129 (765)
Q Consensus        52 ~~~~~~~v-~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~s  129 (765)
                      ..+|++.| ..+.||.         ++|++|..+| ++|||+. .+++...+..|.++|.+|++.|+             
T Consensus         8 L~GH~~~vitc~~~~~---------~~l~tgs~Dg~i~vWd~~-~~~~~~~l~~H~~~V~~l~~s~~-------------   64 (355)
T d1nexb2           8 LRGHMTSVITCLQFED---------NYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHG-------------   64 (355)
T ss_dssp             EECCSSSCEEEEEEET---------TEEEEEETTTEEEEEETT-TTEEEEEEECCSSCEEEEEEETT-------------
T ss_pred             ECCcCCCcEEEEEECC---------CEEEEEeCCCeEEEEECC-CCcEEEEEECCCCCEEEEEEcCC-------------
Confidence            35677775 5556642         4788888877 9999995 57788889999999999999863             


Q ss_pred             CCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC---CEEEEEecC--Ce
Q 004255          130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RI  204 (765)
Q Consensus       130 rpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s---~V~sV~~s~--~~  204 (765)
                       .+|++.+.                                 +++|++|++...+.........   .+..+...+  +.
T Consensus        65 -~~l~s~s~---------------------------------D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (355)
T d1nexb2          65 -GILVSGST---------------------------------DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY  110 (355)
T ss_dssp             -TEEEEEET---------------------------------TCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             -CEEEEEec---------------------------------ccccccccccccccccccccccccccccccccccccce
Confidence             15554221                                 3689999999999888776543   223333443  55


Q ss_pred             EEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCC
Q 004255          205 VAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS  283 (765)
Q Consensus       205 LaV~-~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s  283 (765)
                      ++++ .++.|++||+.+.+..........               .....      ......                   
T Consensus       111 ~~~~~~d~~i~iw~~~~~~~~~~~~~~~~---------------~~~~~------~~~~~~-------------------  150 (355)
T d1nexb2         111 IVTGSRDNTLHVWKLPKESSVPDHGEEHD---------------YPLVF------HTPEEN-------------------  150 (355)
T ss_dssp             EEEEETTSEEEEEECCC-----------C---------------CCEEE------SCTTTC-------------------
T ss_pred             eeeecCCCcEEEEEccCCceeccccccce---------------eccce------eccccc-------------------
Confidence            6655 456899999988764433321110               00000      000000                   


Q ss_pred             CCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE
Q 004255          284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS  363 (765)
Q Consensus       284 ~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~  363 (765)
                             ..++..                ...+...      .  ....+    .+.....+..|+.|++||+.+++.+.
T Consensus       151 -------~~~~~~----------------~~~~~~~------v--~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~  195 (355)
T d1nexb2         151 -------PYFVGV----------------LRGHMAS------V--RTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLY  195 (355)
T ss_dssp             -------TTEEEE----------------EECCSSC------E--EEEEE----ETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             -------cceeee----------------eeecccc------c--ccccc----ccceeeeecccceeeeeeccccccee
Confidence                   000000                0000000      0  00000    00012345678999999999999999


Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255          364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (765)
Q Consensus       364 ~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (765)
                      .+.+|...+.++.|+|++.++++++.|++ |+|||+..       +          ..+..+. ++ ...|.+++|++  
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~-------~----------~~~~~~~-~h-~~~v~~~~~~~--  253 (355)
T d1nexb2         196 ILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLEN-------G----------ELMYTLQ-GH-TALVGLLRLSD--  253 (355)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTT-------C----------CEEEEEC-CC-SSCCCEEEECS--
T ss_pred             eeeccccccccccccccceeeecccccce-EEeeeccc-------c----------ccccccc-cc-ccccccccccc--
Confidence            99999999999999999999999999765 99999865       3          3566664 43 45689999874  


Q ss_pred             CEEEEEeCCCcEEEEeCCCC
Q 004255          444 QWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl~~~  463 (765)
                      ++|++++.||+|++||++..
T Consensus       254 ~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         254 KFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             SEEEEECTTSEEEEEETTTC
T ss_pred             ceeeeeeccccccccccccc
Confidence            69999999999999999764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=7.3e-17  Score=163.47  Aligned_cols=97  Identities=18%  Similarity=0.259  Sum_probs=77.0

Q ss_pred             ccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEECCC----------CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 004255          344 DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPS----------GTLLVTASVYGNNINIFRIMPSCMRSGSGNHK  412 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~~-~~aH~~~IsaLaFSpd----------G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~  412 (765)
                      .+..||.|+|||+.+++.+.. +.+|..+|.+++|+|+          +.+|||||.|++ |+|||+...      +   
T Consensus       179 ~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~------~---  248 (287)
T d1pgua2         179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRP------M---  248 (287)
T ss_dssp             EEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCT------T---
T ss_pred             cccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCC------C---
Confidence            345688999999999887654 6899999999999875          468999999775 999998541      1   


Q ss_pred             cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004255          413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL  460 (765)
Q Consensus       413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl  460 (765)
                             ..+ ....|+ ...|++++|+||+ .|++++.|++|+||++
T Consensus       249 -------~~~-~~~~~h-~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         249 -------KII-KALNAH-KDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -------CCE-EETTSS-TTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             -------eEE-EEeCCC-CCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                   233 333454 4579999999987 5888999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=2e-17  Score=166.89  Aligned_cols=291  Identities=11%  Similarity=0.020  Sum_probs=170.0

Q ss_pred             CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEee--eeccCCEEEEEEecCCCCCCCCCCccc
Q 004255           52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELV--SKRDGPVSFLQMQPFPVKDDGCEGFRK  128 (765)
Q Consensus        52 ~~~~~~~v~w~~fd~l~~~~~~~~~vL~~G~~~G-~qVWdv~~~g~~~ell--s~~dg~V~~v~~lP~p~~~~~~d~f~~  128 (765)
                      .+.++|.|.-+.|..       +++.|++|+.+| ++|||++......++.  ..|.++|.++++.|+            
T Consensus         7 ~~~h~d~I~~l~fsp-------~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~------------   67 (342)
T d1yfqa_           7 EQAPKDYISDIKIIP-------SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN------------   67 (342)
T ss_dssp             SSCCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES------------
T ss_pred             CCCCCCCEEEEEEeC-------CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC------------
Confidence            467899999999976       246888888776 9999997654444433  258899999999874            


Q ss_pred             cCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC--C--EEEEEecCCe
Q 004255          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS--S--VCMVRCSPRI  204 (765)
Q Consensus       129 srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s--~--V~sV~~s~~~  204 (765)
                      ...+|++ ++                                .+++|++|++..+.....+....  .  ......+...
T Consensus        68 ~~~~l~s-g~--------------------------------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (342)
T d1yfqa_          68 TDLQIYV-GT--------------------------------VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK  114 (342)
T ss_dssp             SSEEEEE-EE--------------------------------TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTE
T ss_pred             CCCEEEE-cc--------------------------------cccceeeeeccccccccccccccccccccccccccccc
Confidence            1124443 22                                13689999999888777765442  2  2222334455


Q ss_pred             EEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEc--cceEEEecCCceecCCccccCCCCCCCC
Q 004255          205 VAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG--PRWLAYASNTLLLSNSGRLSPQNLTPSG  281 (765)
Q Consensus       205 LaV-~~~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Als--pr~LAyas~~~~~~~~G~~s~~~lt~~~  281 (765)
                      ++. +.+..+++||+.+................       ......+.+.  ...++.++.+..+     ..|+......
T Consensus       115 ~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~i-----~~~~~~~~~~  182 (342)
T d1yfqa_         115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-------KVKNKIFTMDTNSSRLIVGMNNSQV-----QWFRLPLCED  182 (342)
T ss_dssp             EEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-------SSCCCEEEEEECSSEEEEEESTTEE-----EEEESSCCTT
T ss_pred             ccccccccccceeeccccccceeeecccccccc-------cceeeeeeeeccCCceeeecCCCcE-----EEEecccCcc
Confidence            555 55678999998765544443321110000       0001122332  2555555443211     1122111100


Q ss_pred             CCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 004255          282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI  361 (765)
Q Consensus       282 ~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~  361 (765)
                      ...        ..                 ......      .........+   ........+..+|.+.+|++.....
T Consensus       183 ~~~--------~~-----------------~~~~~~------~~~~~~~~~~---~~~~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         183 DNG--------TI-----------------EESGLK------YQIRDVALLP---KEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             CCC--------EE-----------------EECSCS------SCEEEEEECS---GGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             cce--------ee-----------------eecccc------cceeeeEeec---CCCCEEEeecCCCeEEEEEecCCcc
Confidence            000        00                 000000      0000000000   0011123556789999999764321


Q ss_pred             ---------E------EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          362 ---------I------SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       362 ---------i------~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                               .      .....|..+|++|+|+|+|.+||||+.||+ |+|||+..       +          +++.++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~-------~----------~~l~~~~  290 (342)
T d1yfqa_         229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQT-------R----------KKIKNFA  290 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEEEECC
T ss_pred             eeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE-EEEEECCC-------C----------cEEEEec
Confidence                     1      112357778999999999999999999775 99999965       3          5677665


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      +++   .+..++|+|||++||+++.|+++++|..-
T Consensus       291 ~~~---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         291 KFN---EDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CCS---SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             CCC---CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            432   24568899999999999999999888653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-16  Score=160.27  Aligned_cols=100  Identities=19%  Similarity=0.232  Sum_probs=78.9

Q ss_pred             ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 004255          342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH  421 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~  421 (765)
                      ++.+..||.|++||+..++.+..+.+|...|.+++|++  ++|++++.||. |+|||+..       +          ..
T Consensus       190 l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~-i~iwd~~~-------~----------~~  249 (342)
T d2ovrb2         190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADST-VKIWDIKT-------G----------QC  249 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSC-EEEEETTT-------C----------CE
T ss_pred             EEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCE-EEEEeccc-------c----------cc
Confidence            45778899999999999999999999999999888865  69999999775 99999854       1          24


Q ss_pred             EEEEeccc-ccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          422 LYKLHRGI-TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       422 l~~l~rG~-~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ...+.... +...+.+++|+  +++|++++.||+|+|||+.+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg  290 (342)
T d2ovrb2         250 LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG  290 (342)
T ss_dssp             EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred             cccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCC
Confidence            44443221 22356666665  569999999999999999764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.7e-16  Score=159.23  Aligned_cols=107  Identities=12%  Similarity=0.110  Sum_probs=79.9

Q ss_pred             CCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          348 AGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      ++.|++|++...+....+. .|..+|.+|+|+|+|.+||+++.+|. |++||+..       +          ..+....
T Consensus       140 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~-------~----------~~~~~~~  201 (287)
T d1pgua2         140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQS-------R----------EVKTSRW  201 (287)
T ss_dssp             TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEECCS
T ss_pred             cceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc-ccceeecc-------c----------ccccccc
Confidence            4579999998776666654 58889999999999999999999776 99999854       2          2222222


Q ss_pred             cccccccEEEEEEccC----------CCEEEEEeCCCcEEEEeCCCCCCCc-cccccc
Q 004255          427 RGITSATIQDICFSHY----------SQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLS  473 (765)
Q Consensus       427 rG~~~a~I~slaFSpD----------g~~Las~S~dgTVhIwdl~~~gg~~-~~~~h~  473 (765)
                      .+ +...|.+++|+|+          +.+||+++.|++|+||++...+... .+..|.
T Consensus       202 ~~-h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~  258 (287)
T d1pgua2         202 AF-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK  258 (287)
T ss_dssp             CC-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST
T ss_pred             cc-cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC
Confidence            23 4467999999875          5789999999999999997644332 234553

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=8.9e-16  Score=156.25  Aligned_cols=96  Identities=14%  Similarity=0.154  Sum_probs=74.5

Q ss_pred             cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 004255          345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK  424 (765)
Q Consensus       345 ~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~  424 (765)
                      +..||.|+|||+.++..+..+++|..+|.+++|++  ++|++++.|| .|++||+..       +          .+.+.
T Consensus       219 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg-~i~iwd~~~-------~----------~~~~~  278 (355)
T d1nexb2         219 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADG-SIRGWDAND-------Y----------SRKFS  278 (355)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTS-EEEEEETTT-------C----------CEEEE
T ss_pred             ccccceEEeeecccccccccccccccccccccccc--ceeeeeeccc-ccccccccc-------c----------ceecc
Confidence            34688999999999999999999999999999974  7999999966 599999854       2          24444


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       425 l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      .+   +.......+|++++++|++++ |++|+|||+++..
T Consensus       279 ~~---~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~  314 (355)
T d1nexb2         279 YH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK  314 (355)
T ss_dssp             EE---CTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred             cc---cCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCC
Confidence            43   222223346788888887765 8999999998643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=7.8e-16  Score=164.80  Aligned_cols=81  Identities=19%  Similarity=0.238  Sum_probs=63.4

Q ss_pred             CeEEEEECCCCcEEEEec-------------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 004255          349 GIVVVKDFVTRAIISQFK-------------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW  415 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~-------------aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~  415 (765)
                      +.|+|||+.+++.+..+.             +|...|++|+|+|||++|||+|.|+ +|||||+.+       |      
T Consensus       256 ~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~-~v~vWd~~~-------g------  321 (393)
T d1sq9a_         256 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-KLRFWDVKT-------K------  321 (393)
T ss_dssp             EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-EEEEEETTT-------T------
T ss_pred             ceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC-EEEEEECCC-------C------
Confidence            568899999888777764             8999999999999999999999966 599999976       4      


Q ss_pred             CCcceEEEEEecccccccE----EEEEEccCCCEEEEE
Q 004255          416 NSSHVHLYKLHRGITSATI----QDICFSHYSQWIAIV  449 (765)
Q Consensus       416 ~~s~~~l~~l~rG~~~a~I----~slaFSpDg~~Las~  449 (765)
                          +++++|+ |+.. .|    ..++|++++..++++
T Consensus       322 ----~~~~~l~-gH~~-~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         322 ----ERITTLN-MHCD-DIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             ----EEEEEEE-CCGG-GCSSGGGCCCBCTTSCBCSSC
T ss_pred             ----CEEEEEC-CcCC-cccCCccEEEECCCCCEEEEc
Confidence                5777875 5432 23    346788887776544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=3.2e-14  Score=144.77  Aligned_cols=280  Identities=11%  Similarity=0.073  Sum_probs=169.5

Q ss_pred             eEEEEEec-CcEEEEEccCCCcceEeeeecc--CCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCC
Q 004255           76 QVLLLGYQ-NGFQVLDVEDASNFNELVSKRD--GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH  152 (765)
Q Consensus        76 ~vL~~G~~-~G~qVWdv~~~g~~~ells~~d--g~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~  152 (765)
                      ..|+++.. +.++|||++ ++++...+..++  ..+..+++.|+.             .+|+++...             
T Consensus         2 ~~~vt~~~d~~v~v~D~~-s~~~~~~i~~~~~~~~~~~i~~spDg-------------~~l~v~~~~-------------   54 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTE-KMAVDKVITIADAGPTPMVPMVAPGG-------------RIAYATVNK-------------   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETT-TTEEEEEEECTTCTTCCCCEEECTTS-------------SEEEEEETT-------------
T ss_pred             eEEEEEcCCCEEEEEECC-CCeEEEEEECCCCCCCccEEEECCCC-------------CEEEEEECC-------------
Confidence            35666665 569999995 566777666543  446788888752             255443321             


Q ss_pred             CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------CEEEEEecC--CeEEEEe-------------CC
Q 004255          153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-------------AT  211 (765)
Q Consensus       153 ~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s------~V~sV~~s~--~~LaV~~-------------~~  211 (765)
                                         +++|.+||+++++.+..+..+.      .+..+++++  +.|+++.             ..
T Consensus        55 -------------------~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T d1pbyb_          55 -------------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             -------------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred             -------------------CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccccc
Confidence                               2689999999999999987653      234677776  5565542             35


Q ss_pred             eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCC--ccccCCC-CCCCCCCCCc
Q 004255          212 QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNS--GRLSPQN-LTPSGVSPST  286 (765)
Q Consensus       212 ~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~--G~~s~~~-lt~~~~s~s~  286 (765)
                      .+.+||..+++.+.++.....+              ..+++++  ++|+.++.+......  +...... .........+
T Consensus       116 ~~~~~d~~~~~~~~~~~~~~~~--------------~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  181 (337)
T d1pbyb_         116 RVALYDAETLSRRKAFEAPRQI--------------TMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA  181 (337)
T ss_dssp             EEEEEETTTTEEEEEEECCSSC--------------CCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBC
T ss_pred             ceeeccccCCeEEEeccccCCc--------------eEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCcccccee
Confidence            6899999999988887754332              3467777  677666554322211  1000000 0000000001


Q ss_pred             CCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC-ccC-CCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255          287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP-VSP-NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (765)
Q Consensus       287 sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~-~s~-s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~  364 (765)
                      ++.+..+                           .+...... ... ................++.+.+||+.+++....
T Consensus       182 ~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T d1pbyb_         182 QPDVLAV---------------------------WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             CCBCCCC---------------------------CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             cCCccee---------------------------eccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence            1110000                           00000000 000 000000000112334567899999999886553


Q ss_pred             -eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255          365 -FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (765)
Q Consensus       365 -~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (765)
                       +..|...+..++++|++.+++.++   +.|++||+.+       +          ..+..+.-   ...+.+++|||||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~-------~----------~~~~~~~~---~~~~~~~~~s~dG  291 (337)
T d1pbyb_         235 EVRIMDVFYFSTAVNPAKTRAFGAY---NVLESFDLEK-------N----------ASIKRVPL---PHSYYSVNVSTDG  291 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEE---SEEEEEETTT-------T----------EEEEEEEC---SSCCCEEEECTTS
T ss_pred             EecCCCcceEEEEecccceEEEEcc---ccEEEEECCC-------C----------cEEEEEcC---CCCEEEEEECCCC
Confidence             667888899999999999998775   3699999965       3          35555542   2357899999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCC
Q 004255          444 QWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      ++|++++.+++|+|||+.....
T Consensus       292 ~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         292 STVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             CEEEEESBSSEEEEEETTTCCE
T ss_pred             CEEEEEeCCCcEEEEECCCCcE
Confidence            9999999999999999987543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.1e-14  Score=146.41  Aligned_cols=265  Identities=13%  Similarity=0.053  Sum_probs=147.8

Q ss_pred             ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 004255           97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR  176 (765)
Q Consensus        97 ~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV~  176 (765)
                      +.+++..|+..|..|+|.|+             ..+||+.+.                                 +++|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~-------------~~~L~s~s~---------------------------------Dg~v~   36 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPS-------------KSLLLITSW---------------------------------DGSLT   36 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGG-------------GTEEEEEET---------------------------------TSEEE
T ss_pred             eEEcCCCCCCCEEEEEEeCC-------------CCEEEEEEC---------------------------------CCeEE
Confidence            45677889999999999985             247776332                                 36999


Q ss_pred             EEECCCCe----EEEEEeCCCCEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 004255          177 FYSFQSHC----YEHVLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG  248 (765)
Q Consensus       177 lWdlktg~----~v~tL~~~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~  248 (765)
                      |||+.++.    +...+.+..+|.+++|++   .+|++|. ++.|++||..+.........+....         . ...
T Consensus        37 iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~---------~-~~~  106 (342)
T d1yfqa_          37 VYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL---------G-ICR  106 (342)
T ss_dssp             EEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCS---------C-EEE
T ss_pred             EEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccc---------c-ccc
Confidence            99986653    344456778999999975   3677665 5679999998877655544322210         0 000


Q ss_pred             eeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCC
Q 004255          249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP  328 (765)
Q Consensus       249 ~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~  328 (765)
                      ....+...++.++.+...     ..|+........        .                ....+......    .....
T Consensus       107 ~~~~~~~~~~~~~~~~~~-----~~wd~~~~~~~~--------~----------------~~~~~~~~~~~----~~~~~  153 (342)
T d1yfqa_         107 ICKYGDDKLIAASWDGLI-----EVIDPRNYGDGV--------I----------------AVKNLNSNNTK----VKNKI  153 (342)
T ss_dssp             EEEETTTEEEEEETTSEE-----EEECHHHHTTBC--------E----------------EEEESCSSSSS----SCCCE
T ss_pred             cccccccccccccccccc-----ceeeccccccce--------e----------------eeccccccccc----ceeee
Confidence            111122455554433211     112211000000        0                00000000000    00000


Q ss_pred             ccCCCccccccccccccCCCCeEEEEECCCCcEEE---EeccCCCCeEEEE-ECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 004255          329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS---QFKAHTSPISALC-FDPSGTLLVTASVYGNNINIFRIMPSCM  404 (765)
Q Consensus       329 ~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~---~~~aH~~~IsaLa-FSpdG~lLATaS~dGt~IrVWdi~~~~~  404 (765)
                      ...    .........+..||.|++||+...+...   ....+...+.+.+ ++.++..+++++.+| .+.+|++.....
T Consensus       154 ~~~----~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~v~~~~~~~~  228 (342)
T d1yfqa_         154 FTM----DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG-RVAVEFFDDQGD  228 (342)
T ss_dssp             EEE----EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-EEEEEECCTTCC
T ss_pred             eee----eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCC-eEEEEEecCCcc
Confidence            000    0001113356789999999998765322   2334445555544 456788999999966 599999854210


Q ss_pred             cCCCCCCccccCCcceEEEEEecc-----cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCC
Q 004255          405 RSGSGNHKYDWNSSHVHLYKLHRG-----ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG  464 (765)
Q Consensus       405 ~~~sG~~~~~~~~s~~~l~~l~rG-----~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~g  464 (765)
                      .         ............+.     .+...|.+|+|+|++++||+|+.||+|+|||+....
T Consensus       229 ~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         229 D---------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             S---------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             e---------eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence            0         00000111221111     122358999999999999999999999999998643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.4e-14  Score=139.44  Aligned_cols=212  Identities=15%  Similarity=0.181  Sum_probs=134.1

Q ss_pred             CCEEEEEECCCCeEEEEEeCC-CCEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255          172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~-s~V~sV~~s~~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (765)
                      +++|+|||+.+++++++|+.+ +.|.+|++++++|++|. ++.|++||+.++............             ...
T Consensus        34 Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~-------------~~~  100 (293)
T d1p22a2          34 DNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA-------------VLH  100 (293)
T ss_dssp             SSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC-------------EEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccc-------------ccc
Confidence            368999999999999999865 69999999999998876 457999999998766655432221             001


Q ss_pred             eEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCc
Q 004255          250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV  329 (765)
Q Consensus       250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~  329 (765)
                      .......++.+......     ..|+.......           ...              ..+..+.      ......
T Consensus       101 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----------~~~--------------~~~~~~~------~~v~~~  144 (293)
T d1p22a2         101 LRFNNGMMVTCSKDRSI-----AVWDMASPTDI-----------TLR--------------RVLVGHR------AAVNVV  144 (293)
T ss_dssp             EECCTTEEEEEETTSCE-----EEEECSSSSCC-----------EEE--------------EEECCCS------SCEEEE
T ss_pred             ccccccceeecccccce-----eEeeccccccc-----------ccc--------------ccccccc------cccccc
Confidence            11111444444332100     01111110000           000              0000000      000000


Q ss_pred             cCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCC
Q 004255          330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG  409 (765)
Q Consensus       330 s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG  409 (765)
                      .+.      ......+..||.|++||+.+++.+..+.+|...|..+.++  +.+|++++.||+ |+|||+..       +
T Consensus       145 ~~~------~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~-------~  208 (293)
T d1p22a2         145 DFD------DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIEC-------G  208 (293)
T ss_dssp             EEE------TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTT-------C
T ss_pred             eec------ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEeccc-------c
Confidence            000      0012245678999999999999999999999999888876  578999999775 99999865       2


Q ss_pred             CCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          410 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       410 ~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                                ..+..+. +.. ..|.  .+++++++|++++.||+|+|||+..
T Consensus       209 ----------~~~~~~~-~~~-~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         209 ----------ACLRVLE-GHE-ELVR--CIRFDNKRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             ----------CEEEEEC-CCS-SCEE--EEECCSSEEEEEETTSCEEEEEHHH
T ss_pred             ----------eeeeeec-ccc-eeee--eccccceEEEEEcCCCEEEEEECCC
Confidence                      3444443 322 3454  4778899999999999999999864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.64  E-value=3.4e-13  Score=135.29  Aligned_cols=261  Identities=16%  Similarity=0.116  Sum_probs=162.9

Q ss_pred             EEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCCc
Q 004255           78 LLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV  156 (765)
Q Consensus        78 L~~G~~~-G~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~~  156 (765)
                      .+++..+ .+.|||++ ++++.+.+...+ .+..+++.|+             +..|++....                 
T Consensus         5 yV~~~~~~~v~v~D~~-t~~~~~~i~~g~-~p~~va~spd-------------G~~l~v~~~~-----------------   52 (301)
T d1l0qa2           5 YIANSESDNISVIDVT-SNKVTATIPVGS-NPMGAVISPD-------------GTKVYVANAH-----------------   52 (301)
T ss_dssp             EEEETTTTEEEEEETT-TTEEEEEEECSS-SEEEEEECTT-------------SSEEEEEEGG-----------------
T ss_pred             EEEECCCCEEEEEECC-CCeEEEEEECCC-CceEEEEeCC-------------CCEEEEEECC-----------------
Confidence            3455554 49999995 577777665543 4678888875             2255543221                 


Q ss_pred             ccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEE-eC-CeEEEEECCCCceeEEEEecCC
Q 004255          157 RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-LA-TQIYCFDALTLENKFSVLTYPV  232 (765)
Q Consensus       157 r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~-~~-~~I~iwD~~t~~~l~tl~t~p~  232 (765)
                                     .++|++||+++++.++++.....+..+.+++  +.++++ .. ..+.+||..+++....+..+..
T Consensus        53 ---------------~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (301)
T d1l0qa2          53 ---------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS  117 (301)
T ss_dssp             ---------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             ---------------CCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeeeecccccc
Confidence                           2589999999999999999888889999887  445443 33 4699999999988888775443


Q ss_pred             cccCCCCccccccccceeEEcc--ceEEEecC-CceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhccc
Q 004255          233 PQLAGQGAVGINVGYGPMAVGP--RWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL  309 (765)
Q Consensus       233 p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~-~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~  309 (765)
                      +              ..++++|  +++..+.. +...     ..++..+.            ..+               
T Consensus       118 ~--------------~~~~~~~dg~~~~~~~~~~~~~-----~~~~~~~~------------~~~---------------  151 (301)
T d1l0qa2         118 P--------------LGLALSPDGKKLYVTNNGDKTV-----SVINTVTK------------AVI---------------  151 (301)
T ss_dssp             E--------------EEEEECTTSSEEEEEETTTTEE-----EEEETTTT------------EEE---------------
T ss_pred             c--------------eEEEeecCCCeeeeeeccccce-----eeeecccc------------cee---------------
Confidence            2              3456666  44444332 1100     00111000            000               


Q ss_pred             ceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 004255          310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV  389 (765)
Q Consensus       310 ~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~  389 (765)
                       +++..       ..........++.+..   .......+.+.+|+....+....+..+. .+..++|+++|..++.++.
T Consensus       152 -~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~v~~~  219 (301)
T d1l0qa2         152 -NTVSV-------GRSPKGIAVTPDGTKV---YVANFDSMSISVIDTVTNSVIDTVKVEA-APSGIAVNPEGTKAYVTNV  219 (301)
T ss_dssp             -EEEEC-------CSSEEEEEECTTSSEE---EEEETTTTEEEEEETTTTEEEEEEECSS-EEEEEEECTTSSEEEEEEE
T ss_pred             -eeccc-------CCCceEEEeeccccce---eeecccccccccccccceeeeecccccC-Ccceeeccccccccccccc
Confidence             00000       0000001111111111   1123345788899988888777776654 4577999999999877664


Q ss_pred             C--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE-EEEeCCCcEEEEeCCCC
Q 004255          390 Y--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       390 d--Gt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L-as~S~dgTVhIwdl~~~  463 (765)
                      +  ...|++||+.+       +          ..+..+.-|   ..+.+++|||||++| ++++.+++|+|||+++.
T Consensus       220 ~~~~~~v~v~D~~t-------~----------~~~~~~~~~---~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         220 DKYFNTVSMIDTGT-------N----------KITARIPVG---PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             CSSCCEEEEEETTT-------T----------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cceeeeeeeeecCC-------C----------eEEEEEcCC---CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            3  24699999865       3          344555432   358999999999987 57778999999999864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.62  E-value=3e-14  Score=154.58  Aligned_cols=105  Identities=8%  Similarity=0.044  Sum_probs=76.6

Q ss_pred             ccCCCCeEEEEECCC-------CcEEEEeccCCCCeEEEEECCCCCEEEE-------EEcCCCEEEEEeCCCCcccCCCC
Q 004255          344 DMDNAGIVVVKDFVT-------RAIISQFKAHTSPISALCFDPSGTLLVT-------ASVYGNNINIFRIMPSCMRSGSG  409 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s-------~~~i~~~~aH~~~IsaLaFSpdG~lLAT-------aS~dGt~IrVWdi~~~~~~~~sG  409 (765)
                      ....++.+.+|+...       .+....+.+|...+.+++|+|||++|+.       ++.++ +|+|||+.+       +
T Consensus       271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~-tv~vwd~~t-------~  342 (426)
T d1hzua2         271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ-SVAVFDLKN-------L  342 (426)
T ss_dssp             ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHT-CEEEEETTC-------T
T ss_pred             ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCC-EEEEEECCC-------C
Confidence            345688999998765       3688899999999999999999999994       44544 599999965       2


Q ss_pred             CCccccCCcceEEEEEec-------ccccccEEEEEEccCCCEEEEE-----eCCCcEEEEeCCCCCCC
Q 004255          410 NHKYDWNSSHVHLYKLHR-------GITSATIQDICFSHYSQWIAIV-----SSKGTCHVFVLSPFGGD  466 (765)
Q Consensus       410 ~~~~~~~~s~~~l~~l~r-------G~~~a~I~slaFSpDg~~Las~-----S~dgTVhIwdl~~~gg~  466 (765)
                                ..++++..       +.+...|.+++|||||++|+.+     +.+++|+|||..+.+..
T Consensus       343 ----------~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         343 ----------DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             ----------TSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             ----------CcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence                      12222210       1122358899999999987543     46889999999886543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.60  E-value=1e-13  Score=141.44  Aligned_cols=293  Identities=11%  Similarity=0.043  Sum_probs=167.9

Q ss_pred             CCeEEEEEecC-cEEEEEccCCCcceEeeee-ccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255           74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSK-RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (765)
Q Consensus        74 ~~~vL~~G~~~-G~qVWdv~~~g~~~ells~-~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~  151 (765)
                      .++.|+++..+ .+.|||++ ++++...+.. +...+..|.+.|+.             ..|++....            
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~-t~~~~~t~~~~~~~~p~~l~~spDG-------------~~l~v~~~~------------   60 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMPDKFGPGTAMMAPDN-------------RTAYVLNNH------------   60 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETT-TTEEEEEEECSSCCSSCEEEECTTS-------------SEEEEEETT------------
T ss_pred             CCcEEEEEcCCCEEEEEECC-CCCEEEEEEcCCCCCcceEEECCCC-------------CEEEEEECC------------
Confidence            46788888766 59999995 6777776654 34456788888752             244443221            


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-------CEEEEEecC--CeEEEEe-------------
Q 004255          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-------SVCMVRCSP--RIVAVGL-------------  209 (765)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~~v~tL~~~s-------~V~sV~~s~--~~LaV~~-------------  209 (765)
                                          +++|++||+.+++.+.++....       .+..+++++  ++|.++.             
T Consensus        61 --------------------~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~  120 (346)
T d1jmxb_          61 --------------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  120 (346)
T ss_dssp             --------------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             --------------------CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccC
Confidence                                2689999999999999887542       245677776  5665543             


Q ss_pred             CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecC--CccccCCC-CCCCCCCC
Q 004255          210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSN--SGRLSPQN-LTPSGVSP  284 (765)
Q Consensus       210 ~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~--~G~~s~~~-lt~~~~s~  284 (765)
                      +..|.+||..+++....+..+..|..           ...+..++  ++++.. .+...+.  .+...... ........
T Consensus       121 ~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (346)
T d1jmxb_         121 PPRLEVFSTADGLEAKPVRTFPMPRQ-----------VYLMRAADDGSLYVAG-PDIYKMDVKTGKYTVALPLRNWNRKG  188 (346)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSS-----------CCCEEECTTSCEEEES-SSEEEECTTTCCEEEEECSTTCCCTT
T ss_pred             cceEEEEecccceeeeEEEeeeccCc-----------eEEEEecCCCEEEEeC-CcceEEEccCCCEEEEEecCCCccce
Confidence            44688899888876655554433211           12233444  333332 2211111  01000000 00000111


Q ss_pred             CcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 004255          285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ  364 (765)
Q Consensus       285 s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~  364 (765)
                      ..+|.+..+.+....       .   .++......         .....    ..........++.+.+||+.++.....
T Consensus       189 ~~~~~~~~~~~~~~~-------~---~~~~~~~~~---------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (346)
T d1jmxb_         189 YSAPDVLYFWPHQSP-------R---HEFSMLYTI---------ARFKD----DKQDPATADLLYGYLSVDLKTGKTHTQ  245 (346)
T ss_dssp             BCCCBCCCCCCCCCT-------T---CEEEEEEEE---------EEC-----------CCCEEEEEEEEEETTTCCEEEE
T ss_pred             EEeccccEEEEEecC-------C---CceEeeeee---------eeecc----CceeEeeccCCceEEEEECCCCceEEE
Confidence            112221111000000       0   000000000         00000    000011234456899999999876554


Q ss_pred             -eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 004255          365 -FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS  443 (765)
Q Consensus       365 -~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg  443 (765)
                       +..|...+..+.+++++.+++.++. + .|++||+..       +          ..+..+..|   ..+.+++|||||
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~v~d~~~-------~----------~~~~~~~~~---~~~~~va~s~DG  303 (346)
T d1jmxb_         246 EFADLTELYFTGLRSPKDPNQIYGVL-N-RLAKYDLKQ-------R----------KLIKAANLD---HTYYCVAFDKKG  303 (346)
T ss_dssp             EEEECSSCEEEEEECSSCTTEEEEEE-S-EEEEEETTT-------T----------EEEEEEECS---SCCCEEEECSSS
T ss_pred             EeecccceeEEEEEeCCCCEEEEecC-C-eEEEEECCC-------C----------cEEEEEcCC---CCEEEEEEcCCC
Confidence             5678889999999999999988876 4 599999865       3          455555433   348899999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCccc
Q 004255          444 QWIAIVSSKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       444 ~~Las~S~dgTVhIwdl~~~gg~~~~  469 (765)
                      ++|++++.|++|+|||+.+.+....+
T Consensus       304 ~~l~v~~~d~~v~v~D~~t~~~i~~i  329 (346)
T d1jmxb_         304 DKLYLGGTFNDLAVFNPDTLEKVKNI  329 (346)
T ss_dssp             SCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             CEEEEEeCCCcEEEEECccCCEEEEE
Confidence            99999999999999999875544333

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.52  E-value=3.9e-13  Score=138.13  Aligned_cols=171  Identities=9%  Similarity=0.014  Sum_probs=126.3

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEE-EeCC--eEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV-GLAT--QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV-~~~~--~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      +.|.+||+++++.++ +.+...|.+++|+|  +.|++ +.++  .|++||+.+++.. .+..+...             .
T Consensus        24 g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~-------------v   88 (360)
T d1k32a3          24 GQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGN-------------V   88 (360)
T ss_dssp             TEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCS-------------E
T ss_pred             CeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCce-------------E
Confidence            489999999988776 45677999999998  46654 4444  5999999988643 33333321             2


Q ss_pred             ceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCC
Q 004255          248 GPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS  325 (765)
Q Consensus       248 ~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s  325 (765)
                      ..++++|  ++|+++                                                                 
T Consensus        89 ~~~~~spdg~~l~~~-----------------------------------------------------------------  103 (360)
T d1k32a3          89 FAMGVDRNGKFAVVA-----------------------------------------------------------------  103 (360)
T ss_dssp             EEEEECTTSSEEEEE-----------------------------------------------------------------
T ss_pred             Eeeeeccccccccee-----------------------------------------------------------------
Confidence            3345544  333332                                                                 


Q ss_pred             CCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC---------CCEEEE
Q 004255          326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY---------GNNINI  396 (765)
Q Consensus       326 ~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d---------Gt~IrV  396 (765)
                                          ..++.+++||+.+++....+..|...+.+++|+|||++||.++.+         +..+++
T Consensus       104 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v  163 (360)
T d1k32a3         104 --------------------NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  163 (360)
T ss_dssp             --------------------ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             --------------------ccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence                                346789999999999999999999999999999999999976542         235889


Q ss_pred             EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       397 Wdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ||+..       +           ....+..+  ...+..++|+|||++|++++.|+++++|+....
T Consensus       164 ~d~~~-------~-----------~~~~~~~~--~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         164 YDMEG-------R-----------KIFAATTE--NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EETTT-------T-----------EEEECSCS--SSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             ecccc-------C-----------ceeeeccc--ccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            99854       2           33333322  345788999999999999999999999997654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=6.8e-11  Score=129.08  Aligned_cols=182  Identities=10%  Similarity=-0.023  Sum_probs=125.9

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeE--EEEecCCcccCCCCccccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKF--SVLTYPVPQLAGQGAVGINVG  246 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~--tl~t~p~p~~~~~~~~~~~~~  246 (765)
                      +++|.|||++++++++++.....+..|+|+|  ++|+++. ++.|++||+.|++...  .+.....              
T Consensus        41 ~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~--------------  106 (432)
T d1qksa2          41 AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE--------------  106 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE--------------
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC--------------
Confidence            3699999999999999999888899999998  7888765 5789999999876433  2222111              


Q ss_pred             cceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCC
Q 004255          247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS  326 (765)
Q Consensus       247 ~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~  326 (765)
                        +     +-++++                       +.++|++..++                                
T Consensus       107 --~-----~~~~~s-----------------------~~~SpDG~~l~--------------------------------  124 (432)
T d1qksa2         107 --A-----RSIETS-----------------------KMEGWEDKYAI--------------------------------  124 (432)
T ss_dssp             --E-----EEEEEC-----------------------CSTTCTTTEEE--------------------------------
T ss_pred             --C-----CCeEEe-----------------------cccCCCCCEEE--------------------------------
Confidence              1     111111                       11223322211                                


Q ss_pred             CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC-----------CCCeEEEEECCCCCEEEEEEcCCCEEE
Q 004255          327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-----------TSPISALCFDPSGTLLVTASVYGNNIN  395 (765)
Q Consensus       327 ~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH-----------~~~IsaLaFSpdG~lLATaS~dGt~Ir  395 (765)
                                      +.+..+++|+|||..+++++..+..|           .....++.|+|+|..++.+..+...|.
T Consensus       125 ----------------vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         125 ----------------AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             ----------------EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             ----------------EEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence                            12345789999999999998887654           345668999999998876666566799


Q ss_pred             EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCC
Q 004255          396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPF  463 (765)
Q Consensus       396 VWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~  463 (765)
                      +||...       +        ....+.++.-   ...+.+++|+|||+++++++. ++++.+++....
T Consensus       189 ~~d~~~-------~--------~~~~~~~i~~---g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         189 LVDYTD-------L--------NNLKTTEISA---ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EEETTC-------S--------SEEEEEEEEC---CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEccC-------C--------CcceEEEEcc---cCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            999854       1        0123334432   235789999999998877765 557888888754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=7.6e-11  Score=119.78  Aligned_cols=284  Identities=12%  Similarity=0.069  Sum_probs=151.1

Q ss_pred             CeEEEEEecC-cEEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcC
Q 004255           75 KQVLLLGYQN-GFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS  151 (765)
Q Consensus        75 ~~vL~~G~~~-G~qVWdv~~~g~~~ells--~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~  151 (765)
                      ..|++++..+ .|+|||++..+. .+++.  .+.+.|..|++.|+.             ..|++...             
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~-l~~~~~~~~~~~v~~la~spDG-------------~~L~v~~~-------------   56 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGA-LTLTQVVDVPGQVQPMVVSPDK-------------RYLYVGVR-------------   56 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSC-EEEEEEEECSSCCCCEEECTTS-------------SEEEEEET-------------
T ss_pred             eEEEEECCCCCcEEEEEEcCCCC-eEEEEEEcCCCCEeEEEEeCCC-------------CEEEEEEC-------------
Confidence            3466777655 499999976553 34444  566889999999852             25554221             


Q ss_pred             CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe----EEEEEeCCCCEEEEEecC--CeEEEEe--CCeEEEEECCCCce
Q 004255          152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC----YEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLEN  223 (765)
Q Consensus       152 ~~~~~r~g~~~~~~~~~~~~p~tV~lWdlktg~----~v~tL~~~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~  223 (765)
                                         .+++|++|++....    .+........+..+++++  ++|+++.  +..|.+|+......
T Consensus        57 -------------------~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~  117 (333)
T d1ri6a_          57 -------------------PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP  117 (333)
T ss_dssp             -------------------TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred             -------------------CCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccc
Confidence                               13689999987653    333334555677888987  6777765  34799998877654


Q ss_pred             eEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhh
Q 004255          224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH  301 (765)
Q Consensus       224 l~tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~  301 (765)
                      .........+.           ....++++|  +++..+.......    ..++....          .......     
T Consensus       118 ~~~~~~~~~~~-----------~~~~v~~s~d~~~~~~~~~~~~~i----~~~~~~~~----------~~~~~~~-----  167 (333)
T d1ri6a_         118 VGVVDVVEGLD-----------GCHSANISPDNRTLWVPALKQDRI----CLFTVSDD----------GHLVAQD-----  167 (333)
T ss_dssp             EEEEEEECCCT-----------TBCCCEECTTSSEEEEEEGGGTEE----EEEEECTT----------SCEEEEE-----
T ss_pred             eecccccCCCc-----------cceEEEeeecceeeecccccccee----eEEEeccC----------Ccceeee-----
Confidence            44443222110           112356766  5555543221000    00000000          0000000     


Q ss_pred             hhhhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc----EEEEec------cCCCC
Q 004255          302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFK------AHTSP  371 (765)
Q Consensus       302 ~k~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~------aH~~~  371 (765)
                                  .... ............++++....   .......+...+|++....    ....+.      .....
T Consensus       168 ------------~~~~-~~~~g~~p~~i~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (333)
T d1ri6a_         168 ------------PAEV-TTVEGAGPRHMVFHPNEQYA---YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW  231 (333)
T ss_dssp             ------------EEEE-ECSTTCCEEEEEECTTSSEE---EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred             ------------ceee-eeecCCCccEEEEeccceeE---EeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc
Confidence                        0000 00000000011111111111   1122345566677754322    222221      23345


Q ss_pred             eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-
Q 004255          372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-  450 (765)
Q Consensus       372 IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-  450 (765)
                      ...++|++||+++..+......+++|++...      +.        ...+....  .+...+.+++|||||++|++++ 
T Consensus       232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~------~~--------~~~~~~~~--~~~~~p~~~a~spDGk~l~va~~  295 (333)
T d1ri6a_         232 AADIHITPDGRHLYACDRTASLITVFSVSED------GS--------VLSKEGFQ--PTETQPRGFNVDHSGKYLIAAGQ  295 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTT------SC--------CEEEEEEE--ECSSSCCCEEECTTSSEEEEECT
T ss_pred             ceeEEEecccCceeeecccCCeEEEEEEcCC------CC--------EEEEEEEe--CCCCCeeEEEEeCCCCEEEEEEC
Confidence            6789999999998888776778999998542      10        01111111  1123467899999999987765 


Q ss_pred             CCCcEEEEeCCCCCCC
Q 004255          451 SKGTCHVFVLSPFGGD  466 (765)
Q Consensus       451 ~dgTVhIwdl~~~gg~  466 (765)
                      .+++|.||+++...|.
T Consensus       296 ~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         296 KSHHISVYEIVGEQGL  311 (333)
T ss_dssp             TTCEEEEEEEETTTTE
T ss_pred             CCCeEEEEEEECCCCc
Confidence            5689999998775553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=9.4e-10  Score=119.87  Aligned_cols=253  Identities=12%  Similarity=0.087  Sum_probs=150.8

Q ss_pred             EEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCCEEEEEEcCCCCCCCCCCCcCCCCC
Q 004255           77 VLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG  155 (765)
Q Consensus        77 vL~~G~~~G-~qVWdv~~~g~~~ells~~dg~V~~v~~lP~p~~~~~~d~f~~srpLLavv~~d~~~~~~~~~~~~~~~~  155 (765)
                      ++++-.++| +.|||.+ ++++...+..+. .|..++|+|+.             .+|++...                 
T Consensus        34 ~~v~~~d~g~v~v~D~~-t~~v~~~~~~g~-~~~~v~fSpDG-------------~~l~~~s~-----------------   81 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGS-TYEIKTVLDTGY-AVHISRLSASG-------------RYLFVIGR-----------------   81 (432)
T ss_dssp             EEEEETTTTEEEEEETT-TCCEEEEEECSS-CEEEEEECTTS-------------CEEEEEET-----------------
T ss_pred             EEEEEcCCCEEEEEECC-CCcEEEEEeCCC-CeeEEEECCCC-------------CEEEEEcC-----------------
Confidence            345555665 9999994 678888887664 58999999863             26665321                 


Q ss_pred             cccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeCCC----CEEEEEecC--CeEEE-Ee-CCeEEEEECCCCceeE
Q 004255          156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRFRS----SVCMVRCSP--RIVAV-GL-ATQIYCFDALTLENKF  225 (765)
Q Consensus       156 ~r~g~~~~~~~~~~~~p~tV~lWdlktg~--~v~tL~~~s----~V~sV~~s~--~~LaV-~~-~~~I~iwD~~t~~~l~  225 (765)
                                      +++|++||+.+++  .+.+++-..    .++++.+++  ++|++ +. ++.|.+||+.+++.+.
T Consensus        82 ----------------dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~  145 (432)
T d1qksa2          82 ----------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK  145 (432)
T ss_dssp             ----------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred             ----------------CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee
Confidence                            3689999999876  455554322    344455554  56543 43 5689999999999988


Q ss_pred             EEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhh
Q 004255          226 SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK  303 (765)
Q Consensus       226 tl~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k  303 (765)
                      ++..+...             ....++++  +.+|...+                         |++..++         
T Consensus       146 ~~~~~~~~-------------~~~~~~~~~~~~~~v~~s-------------------------~dg~~~~---------  178 (432)
T d1qksa2         146 IQSTRGMT-------------YDEQEYHPEPRVAAILAS-------------------------HYRPEFI---------  178 (432)
T ss_dssp             EEECCEEC-------------TTTCCEESCCCEEEEEEC-------------------------SSSSEEE---------
T ss_pred             eeccCCcc-------------ccceeccCCCceeEEEEC-------------------------CCCCEEE---------
Confidence            88754321             01112222  32222111                         1111110         


Q ss_pred             hhhcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC
Q 004255          304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT  382 (765)
Q Consensus       304 ~la~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~  382 (765)
                                                             .....++.|.+||..+.+...... .+...+..++|+|||+
T Consensus       179 ---------------------------------------vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~  219 (432)
T d1qksa2         179 ---------------------------------------VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  219 (432)
T ss_dssp             ---------------------------------------EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             ---------------------------------------EEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCC
Confidence                                                   122357889999998877554433 3455678999999999


Q ss_pred             EEEEEEcCCCEEEEEeCCCCccc------C----CCCCCccccCCc----------ceEEEEEec---cc--ccccEEEE
Q 004255          383 LLVTASVYGNNINIFRIMPSCMR------S----GSGNHKYDWNSS----------HVHLYKLHR---GI--TSATIQDI  437 (765)
Q Consensus       383 lLATaS~dGt~IrVWdi~~~~~~------~----~sG~~~~~~~~s----------~~~l~~l~r---G~--~~a~I~sl  437 (765)
                      +|++++.++..+.++|.......      .    ..+.....+...          ...+.....   ..  +...|...
T Consensus       220 ~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~  299 (432)
T d1qksa2         220 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS  299 (432)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEE
Confidence            99999998989999998642110      0    000000000000          000000000   00  11246777


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          438 CFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       438 aFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      .|+||+..+++++.+++.++|+....
T Consensus       300 ~~~~~g~~~~~~s~p~~~~lw~~~~~  325 (432)
T d1qksa2         300 FPALGGGSLFIKTHPNSQYLYVDATL  325 (432)
T ss_dssp             EECSCSCCCCEECCTTCSEEEEECTT
T ss_pred             EEcCCCCeEEEEecCCccceeecccC
Confidence            88888888888888888888876543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.29  E-value=7.4e-10  Score=110.38  Aligned_cols=175  Identities=11%  Similarity=0.082  Sum_probs=127.1

Q ss_pred             CCEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY  247 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~  247 (765)
                      +++|.+||+++++.+++++....+..|++++  ++|+++.  +++|++||+.+++.+.++..+..|              
T Consensus        11 ~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~--------------   76 (301)
T d1l0qa2          11 SDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP--------------   76 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE--------------
T ss_pred             CCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccc--------------
Confidence            3689999999999999999988899999998  5665543  468999999999988887654332              


Q ss_pred             ceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCC
Q 004255          248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS  327 (765)
Q Consensus       248 ~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~  327 (765)
                             +.+++..+..                           .++                                 
T Consensus        77 -------~~~~~~~~~~---------------------------~~~---------------------------------   89 (301)
T d1l0qa2          77 -------QGVAVSPDGK---------------------------QVY---------------------------------   89 (301)
T ss_dssp             -------EEEEECTTSS---------------------------EEE---------------------------------
T ss_pred             -------cccccccccc---------------------------ccc---------------------------------
Confidence                   1223322110                           000                                 


Q ss_pred             CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC
Q 004255          328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG  407 (765)
Q Consensus       328 ~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~  407 (765)
                                     .....++.+.+||..+++.+..+..+. ...+++|+|+|..++.++..+..+.+|+...      
T Consensus        90 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~------  147 (301)
T d1l0qa2          90 ---------------VTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVT------  147 (301)
T ss_dssp             ---------------EEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT------
T ss_pred             ---------------ccccccceeeecccccceeeeeccccc-cceEEEeecCCCeeeeeeccccceeeeeccc------
Confidence                           012346789999999999888887664 5688999999999988777788899999855      


Q ss_pred             CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-CcEEEEeCCCC
Q 004255          408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPF  463 (765)
Q Consensus       408 sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d-gTVhIwdl~~~  463 (765)
                       +          ..+..+..   ...+..++|+||++++++++.+ +.+.+|+....
T Consensus       148 -~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (301)
T d1l0qa2         148 -K----------AVINTVSV---GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (301)
T ss_dssp             -T----------EEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             -c----------ceeeeccc---CCCceEEEeeccccceeeecccccccccccccce
Confidence             2          34444432   2347889999999998888766 55667766543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.20  E-value=2.4e-09  Score=109.93  Aligned_cols=106  Identities=12%  Similarity=0.029  Sum_probs=72.3

Q ss_pred             ccCCCCeEEEEECCCCcEEE--EeccCC----------CCeEEEEECCCCCEEEEEEcCC---------CEEEEEeCCCC
Q 004255          344 DMDNAGIVVVKDFVTRAIIS--QFKAHT----------SPISALCFDPSGTLLVTASVYG---------NNINIFRIMPS  402 (765)
Q Consensus       344 ~~~~dG~V~IwDl~s~~~i~--~~~aH~----------~~IsaLaFSpdG~lLATaS~dG---------t~IrVWdi~~~  402 (765)
                      ....+|.+.+||+..++...  ....|.          .....++++++|+.++.++.++         ..|.+||..+ 
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-  289 (355)
T d2bbkh_         211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-  289 (355)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-
T ss_pred             EecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-
Confidence            44678999999998875322  222221          2334689999999988776543         3689999865 


Q ss_pred             cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCCCCccc
Q 004255          403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ--WIAIVSSKGTCHVFVLSPFGGDSGF  469 (765)
Q Consensus       403 ~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~--~Las~S~dgTVhIwdl~~~gg~~~~  469 (765)
                            +          +.+.++.-+   ..+.+++|||||+  ++++++.|++|+|||+.+.+....+
T Consensus       290 ------~----------~~~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         290 ------G----------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             ------C----------CEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ------C----------cEEEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence                  2          344455432   3478999999998  4566778999999999875433333

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.16  E-value=3e-09  Score=114.47  Aligned_cols=184  Identities=9%  Similarity=-0.039  Sum_probs=117.2

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP  249 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~~~~~  249 (765)
                      ++|+|||+.+++++++|+.+..+.+|+|+|  ++|+++. ++.|++||+.|++......-....            +...
T Consensus        42 g~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~------------~~~~  109 (426)
T d1hzua2          42 GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI------------EARS  109 (426)
T ss_dssp             TEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS------------EEEE
T ss_pred             CEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC------------CCcc
Confidence            699999999999999999988999999998  7887765 568999999999865443211100            0011


Q ss_pred             eEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCCCCCCCc
Q 004255          250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV  329 (765)
Q Consensus       250 ~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~~s~~~~  329 (765)
                      ++++                              +.++|++..++                                   
T Consensus       110 ~~~s------------------------------~~~spDG~~l~-----------------------------------  124 (426)
T d1hzua2         110 VESS------------------------------KFKGYEDRYTI-----------------------------------  124 (426)
T ss_dssp             EEEC------------------------------CSTTCTTTEEE-----------------------------------
T ss_pred             eEEe------------------------------eeecCCCCEEE-----------------------------------
Confidence            2221                              11223322111                                   


Q ss_pred             cCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCe-----------EEEEECCCCCEEEEEEcCCCEEEEEe
Q 004255          330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI-----------SALCFDPSGTLLVTASVYGNNINIFR  398 (765)
Q Consensus       330 s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~I-----------saLaFSpdG~lLATaS~dGt~IrVWd  398 (765)
                                   +....++.+++||..++.++..+..|...+           ..++++++++.++.+..+...+.+++
T Consensus       125 -------------v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~  191 (426)
T d1hzua2         125 -------------AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  191 (426)
T ss_dssp             -------------EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             -------------EeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence                         112356799999999999888877665444           45566666666665555444444444


Q ss_pred             CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCC
Q 004255          399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFG  464 (765)
Q Consensus       399 i~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~-dgTVhIwdl~~~g  464 (765)
                      ...       +        ....+....   ....+.+++|+||++++.++.. +..+.++++....
T Consensus       192 ~~~-------~--------~~~~~~~~~---~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         192 YKD-------I--------DNLTVTSIG---AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             CSS-------S--------SSCEEEEEE---CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE
T ss_pred             ecc-------c--------cceeeEEec---cCCccEeeeECCCCcEEEeeeecccceeeeeccccc
Confidence            422       1        001222222   2235899999999998877764 5568888887643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.07  E-value=7.9e-09  Score=104.00  Aligned_cols=145  Identities=15%  Similarity=0.077  Sum_probs=97.3

Q ss_pred             CCEEEEEECCCCeEEEEEeCC---CCEEEEEecC--CeEEE-Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccc
Q 004255          172 PTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAV-GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN  244 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~---s~V~sV~~s~--~~LaV-~~-~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~  244 (765)
                      +++|++||++++++++++..+   ..+.+++++|  ++|++ +. ++.|++||+.|++.+.++..+.....      .  
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~------~--   81 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER------V--   81 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE------E--
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc------c--
Confidence            469999999999999999864   3577889987  56644 43 56799999999999888875322100      0  


Q ss_pred             cccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCC
Q 004255          245 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP  322 (765)
Q Consensus       245 ~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p  322 (765)
                      .....++++|  ++|+.+......     .                                                  
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~-----~--------------------------------------------------  106 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRL-----E--------------------------------------------------  106 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEE-----C--------------------------------------------------
T ss_pred             cceeeEEEcCCCcEEEEeecCCcc-----e--------------------------------------------------
Confidence            0123456666  455444322100     0                                                  


Q ss_pred             CCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255          323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       323 ~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~  401 (765)
                                        .......++.+.+||..+++.+..+..+ ..+..++|+|||++|++++.+   +.+||...
T Consensus       107 ------------------~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~---~~~~d~~~  163 (337)
T d1pbyb_         107 ------------------LTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD---LHVMDPEA  163 (337)
T ss_dssp             ------------------SSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS---EEEEETTT
T ss_pred             ------------------eeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC---cceeeeec
Confidence                              0001124568889999999888888755 457788999999999888652   67788754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.04  E-value=1.1e-07  Score=98.31  Aligned_cols=67  Identities=9%  Similarity=0.078  Sum_probs=45.7

Q ss_pred             EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE--EEEEeCCCcEEEEeC
Q 004255          383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW--IAIVSSKGTCHVFVL  460 (765)
Q Consensus       383 lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~--Las~S~dgTVhIwdl  460 (765)
                      .+++... +..|.+||+.+       +          ..+..+..+   ..+.+++|||||++  +++++.|++|+|||+
T Consensus       290 ~~~~~~~-~~~v~~~d~~t-------~----------~~~~~~~~~---~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         290 AWKLHAA-AKEVTSVTGLV-------G----------QTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             eEEeecC-CCeEEEEECCC-------C----------cEEEEecCC---CCeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            3344444 34588999855       3          344444322   35889999999984  478899999999999


Q ss_pred             CCCCCCcccc
Q 004255          461 SPFGGDSGFQ  470 (765)
Q Consensus       461 ~~~gg~~~~~  470 (765)
                      .+......+.
T Consensus       349 ~tg~~~~~~~  358 (373)
T d2madh_         349 GAGDQDQSTV  358 (373)
T ss_pred             CCCCEEEEEC
Confidence            8865444443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=2.7e-07  Score=92.82  Aligned_cols=186  Identities=13%  Similarity=0.179  Sum_probs=116.8

Q ss_pred             CEEEEEECCCC---eEEEEEeCCCCEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 004255          173 TAVRFYSFQSH---CYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV  245 (765)
Q Consensus       173 ~tV~lWdlktg---~~v~tL~~~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~~~~~~~  245 (765)
                      ++|++||+.+.   +.+.+++....|..|+++|  ++|+++.  ++.|++|++.+.....++..+...     +    . 
T Consensus        14 ~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~-----~----~-   83 (333)
T d1ri6a_          14 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-----P----G-   83 (333)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-----S----S-
T ss_pred             CcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc-----C----C-
Confidence            69999998654   4566677888999999998  6776654  468999998766544444322110     0    0 


Q ss_pred             ccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccccCCC
Q 004255          246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD  323 (765)
Q Consensus       246 ~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~~~p~  323 (765)
                      ....++++|  ++|+.++                                                              
T Consensus        84 ~p~~l~~spDg~~l~v~~--------------------------------------------------------------  101 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGS--------------------------------------------------------------  101 (333)
T ss_dssp             CCSEEEECTTSSEEEEEE--------------------------------------------------------------
T ss_pred             CceEEEEcCCCCEEeecc--------------------------------------------------------------
Confidence            001244544  3333332                                                              


Q ss_pred             CCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE--EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 004255          324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP  401 (765)
Q Consensus       324 ~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~--~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~  401 (765)
                                            ..++.|.+|+........  ....|...+.++.|+|||+++++++..+..|.+|+...
T Consensus       102 ----------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         102 ----------------------YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             ----------------------TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ----------------------cCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence                                  124466677665554332  33456677889999999999999998888899999854


Q ss_pred             CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCC
Q 004255          402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG  465 (765)
Q Consensus       402 ~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~gg  465 (765)
                      .      +.       ...................++|++++.++.... ..+...+|++.....
T Consensus       160 ~------~~-------~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  211 (333)
T d1ri6a_         160 D------GH-------LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG  211 (333)
T ss_dssp             T------SC-------EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             C------Cc-------ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccc
Confidence            2      10       000111111111223478899999999887665 556788998865443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.68  E-value=9e-08  Score=96.41  Aligned_cols=105  Identities=7%  Similarity=-0.033  Sum_probs=78.3

Q ss_pred             ccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 004255          342 GADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV  420 (765)
Q Consensus       342 ~~~~~~dG~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~  420 (765)
                      ++.+..++.|.|||+.+++++.+++ .|...+.+|+|+|||++|+.++..+..|.+||+.+       +          .
T Consensus        11 l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-------~----------~   73 (346)
T d1jmxb_          11 MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-------C----------K   73 (346)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-------T----------E
T ss_pred             EEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc-------C----------e
Confidence            4467789999999999999999987 56667889999999999866665566799999965       3          3


Q ss_pred             EEEEEeccccc----ccEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCC
Q 004255          421 HLYKLHRGITS----ATIQDICFSHYSQWIAIVS------------SKGTCHVFVLSPF  463 (765)
Q Consensus       421 ~l~~l~rG~~~----a~I~slaFSpDg~~Las~S------------~dgTVhIwdl~~~  463 (765)
                      .+..+..+...    ..+..++|||||++|++++            .++.+.+|+....
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~  132 (346)
T d1jmxb_          74 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  132 (346)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             eeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence            44444332211    1245799999999998876            4667778877653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.67  E-value=1.1e-06  Score=91.51  Aligned_cols=59  Identities=5%  Similarity=-0.048  Sum_probs=45.0

Q ss_pred             CCEEEEEECCCCeEEEEEeCCC--------CEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEec
Q 004255          172 PTAVRFYSFQSHCYEHVLRFRS--------SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTY  230 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~s--------~V~sV~~s~--~~LaV~~--~~~I~iwD~~t~~~l~tl~t~  230 (765)
                      +.+|++||..+++.+..+..+.        ....+++++  ++|+++.  .+.|.+||+.+++....+...
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~  165 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA  165 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS
T ss_pred             CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc
Confidence            3689999999999999986432        124577776  7777764  467999999999988877653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.57  E-value=1.9e-06  Score=87.64  Aligned_cols=179  Identities=14%  Similarity=0.040  Sum_probs=112.5

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEecCCcccCCCC
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTYPVPQLAGQG  239 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~t~~~l~tl~t~p~p~~~~~~  239 (765)
                      ++|.+||..+++.+.++.... +..++++|  ++|+++.           ++.|++||+.+++.+..+..+..+..    
T Consensus        28 ~~v~v~D~~tg~~~~~~~~g~-~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~----  102 (355)
T d2bbkh_          28 TQQFVIDGEAGRVIGMIDGGF-LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF----  102 (355)
T ss_dssp             EEEEEEETTTTEEEEEEEECS-SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC----
T ss_pred             CeEEEEECCCCcEEEEEECCC-CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee----
Confidence            689999999999999987432 22577877  6666542           35799999999998888775443210    


Q ss_pred             ccccccccceeEEccceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhhhcccceeecccccc
Q 004255          240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE  319 (765)
Q Consensus       240 ~~~~~~~~~~~Alspr~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~la~G~~ktls~~~~~  319 (765)
                               .....|..+++..+.                           ..+.                         
T Consensus       103 ---------~~~~~~~~~~~s~dg---------------------------~~~~-------------------------  121 (355)
T d2bbkh_         103 ---------LVGTYPWMTSLTPDG---------------------------KTLL-------------------------  121 (355)
T ss_dssp             ---------CBSCCGGGEEECTTS---------------------------SEEE-------------------------
T ss_pred             ---------ecCCCCceEEEecCC---------------------------CeeE-------------------------
Confidence                     000111222332211                           0000                         


Q ss_pred             cCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCC-------CeEEEEECCCCCEEEEEEcCCC
Q 004255          320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS-------PISALCFDPSGTLLVTASVYGN  392 (765)
Q Consensus       320 ~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~-------~IsaLaFSpdG~lLATaS~dGt  392 (765)
                                            ......+..+.+||..+++.+..+..+..       +...++|++||+.++....++.
T Consensus       122 ----------------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~  179 (355)
T d2bbkh_         122 ----------------------FYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG  179 (355)
T ss_dssp             ----------------------EEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred             ----------------------EecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCC
Confidence                                  00112345788899988888877765432       2345677788877776665555


Q ss_pred             EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       393 ~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      .+.+++.....                       .+ ....+...+|++++..++.++.++++++|++...
T Consensus       180 ~~~~~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         180 TPEITHTEVFH-----------------------PE-DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             CCEEEECCCCS-----------------------CT-TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             eEEEEeccccc-----------------------ce-ecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence            56666653310                       00 1112445678889999999999999999999764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.54  E-value=1.4e-06  Score=89.64  Aligned_cols=99  Identities=12%  Similarity=-0.022  Sum_probs=70.6

Q ss_pred             CCCCeEEEEECCCCcEEEEeccCCCCeE-------EEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCC
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAHTSPIS-------ALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNS  417 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH~~~Is-------aLaFSpdG~lLATaS~d-Gt~IrVWdi~~~~~~~~sG~~~~~~~~  417 (765)
                      ..++.|.|||+.+++.+..+..|..+..       .+.|++||+.++....+ +..+.+|+...       +        
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~-------~--------  158 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG-------S--------  158 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC-------C--------
Confidence            4578999999999999998887766553       46788888877666533 44577787643       1        


Q ss_pred             cceEEEEEecccccccEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCCCCc
Q 004255          418 SHVHLYKLHRGITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLSPFGGDS  467 (765)
Q Consensus       418 s~~~l~~l~rG~~~a~I~slaFSpDg~~L-as~S~dgTVhIwdl~~~gg~~  467 (765)
                        ..+...      ....++.|+|||+.+ ++.+.|+++.+|+........
T Consensus       159 --~~~~~~------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~  201 (373)
T d2madh_         159 --SDDQLL------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA  201 (373)
T ss_pred             --eEEEEe------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeE
Confidence              122111      235679999999765 678899999999987654443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.36  E-value=1.8e-06  Score=93.05  Aligned_cols=108  Identities=12%  Similarity=0.088  Sum_probs=68.5

Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      .+|.+.|||+.+++ +..+..|...+..+.|||||++||..+.  ..+.+|+........      ..........+.-.
T Consensus        90 ~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~~--~~l~~~~~~~g~~~~------~t~~~~~~~~~~g~  160 (470)
T d2bgra1          90 YTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVWN--NDIYVKIEPNLPSYR------ITWTGKEDIIYNGI  160 (470)
T ss_dssp             EEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEET--TEEEEESSTTSCCEE------CCSCCBTTTEEESB
T ss_pred             cCceEEEEECCCCc-ccccccCCccccccccccCcceeeEeec--ccceEEECCCCceee------eeeccCCCcccccc
Confidence            35789999999887 4668899999999999999999999765  468999975421000      00000000000000


Q ss_pred             cc-----cccccEEEEEEccCCCEEEEEeCCCc-EEEEeCCCC
Q 004255          427 RG-----ITSATIQDICFSHYSQWIAIVSSKGT-CHVFVLSPF  463 (765)
Q Consensus       427 rG-----~~~a~I~slaFSpDg~~Las~S~dgT-VhIwdl~~~  463 (765)
                      ..     ........+.|||||++||....|.+ +..|.+..+
T Consensus       161 ~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~  203 (470)
T d2bgra1         161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFY  203 (470)
T ss_dssp             CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred             cceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEee
Confidence            00     00011345789999999999988766 776666543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.22  E-value=4.1e-05  Score=83.18  Aligned_cols=223  Identities=9%  Similarity=0.062  Sum_probs=130.1

Q ss_pred             CCEEEEEECCCCeEEEEEeCC--CCEEEEEecC--C--eEEEEeCCeE------------------EEEECCCCceeEEE
Q 004255          172 PTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--R--IVAVGLATQI------------------YCFDALTLENKFSV  227 (765)
Q Consensus       172 p~tV~lWdlktg~~v~tL~~~--s~V~sV~~s~--~--~LaV~~~~~I------------------~iwD~~t~~~l~tl  227 (765)
                      .++|.++|++++++...++.+  ..+..+++++  +  +++...+..+                  ..+|..+++..+++
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            469999999999999988764  4789999986  4  4444444444                  55899999988888


Q ss_pred             EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCCccccCCCCCCCCCCCCcCCCCCcceeeehhhhhhhh
Q 004255          228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF  305 (765)
Q Consensus       228 ~t~p~p~~~~~~~~~~~~~~~~~Alsp--r~LAyas~~~~~~~~G~~s~~~lt~~~~s~s~sp~~gslva~~a~d~~k~l  305 (765)
                      ....+|              ..++++|  +|+..+....-    .....+..+....        .. +....+...   
T Consensus       173 ~v~~~p--------------~~v~~spdGk~a~vt~~nse----~~~~id~~t~~~~--------d~-i~v~n~p~~---  222 (441)
T d1qnia2         173 IVDGNL--------------DNTDADYTGKYATSTCYNSE----RAVDLAGTMRNDR--------DW-VVVFNVERI---  222 (441)
T ss_dssp             EESSCC--------------CCEEECSSSSEEEEEESCTT----CCSSHHHHTCSSB--------CE-EEEEEHHHH---
T ss_pred             ecCCCc--------------cceEECCCCCEEEEEecCCC----ceEEEeccCcceE--------EE-EEeCCccce---
Confidence            754443              3467887  77666543210    0000000000000        00 000000000   


Q ss_pred             hcccceeecccccccCCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 004255          306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV  385 (765)
Q Consensus       306 a~G~~ktls~~~~~~~p~~s~~~~s~s~~~~~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLA  385 (765)
                                  -.+.++           ++..     ....++.+.|++....+.+..++.+.+| ..+.++|||++++
T Consensus       223 ------------~~~~~d-----------Gk~~-----~v~~~~v~vvd~~~~~~v~~~IPvgksP-hGv~vSPDGkyl~  273 (441)
T d1qnia2         223 ------------AAAVKA-----------GNFK-----TIGDSKVPVVDGRGESEFTRYIPVPKNP-HGLNTSPDGKYFI  273 (441)
T ss_dssp             ------------HHHHHT-----------TCCB-----CCTTCCCCEEECSSSCSSEEEECCBSSC-CCEEECTTSCEEE
T ss_pred             ------------EEEecC-----------CCEE-----EeCCCCcEEEEcccCCceEEEEeCCCCc-cCceECCCCCEEE
Confidence                        000111           1111     1234577888888888888889887776 5689999999998


Q ss_pred             EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       386 TaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      .++..+.+|.|||+......- .+.  .+...  ....+..-|.   -....+|+++|+-+.+...|.+|..|++.
T Consensus       274 ~~~~~~~tvsv~d~~k~~~~~-~~~--~~~~~--~~~~~~~~gl---gplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         274 ANGKLSPTVSVIAIDKLDDLF-EDK--IELRD--TIVAEPELGL---GPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EECTTSSBEEEEEGGGHHHHT-TTS--SCGGG--GEEECCBCCS---CEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             EeCCcCCcEEEEEeehhhhHh-hcc--CCcce--EEEeeccccc---CcccceecCCceEEEcccccceEEEeccc
Confidence            777767789999985421000 000  00000  1111111111   13456899999999999999999999985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.01  E-value=1e-05  Score=83.92  Aligned_cols=99  Identities=8%  Similarity=-0.034  Sum_probs=71.9

Q ss_pred             CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCC
Q 004255          347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNS  417 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~---------dGt~IrVWdi~~~~~~~~sG~~~~~~~~  417 (765)
                      .+..|.+||..+++.+.++..|..+  .++|+|||+.|+.++.         .+..|++||..+       +        
T Consensus        44 g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t-------~--------  106 (368)
T d1mdah_          44 GTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------F--------  106 (368)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------C--------
T ss_pred             CcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCC-------C--------
Confidence            3456778899999999999888766  5899999999998763         123599999865       2        


Q ss_pred             cceEEEEEec--cc---ccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCC
Q 004255          418 SHVHLYKLHR--GI---TSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG  464 (765)
Q Consensus       418 s~~~l~~l~r--G~---~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~g  464 (765)
                        +.+.++.-  +.   .......++|||||++|++++ .++++.+||+....
T Consensus       107 --~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~  157 (368)
T d1mdah_         107 --LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             --CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             --cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence              34444421  10   111124689999999998886 57999999998754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.92  E-value=1.2e-05  Score=86.27  Aligned_cols=96  Identities=13%  Similarity=0.136  Sum_probs=71.2

Q ss_pred             CCCeEEEEECCCCcEEEEec-----cCCCCeEEEEECCCCCEEEEEEcC--------CCEEEEEeCCCCcccCCCCCCcc
Q 004255          347 NAGIVVVKDFVTRAIISQFK-----AHTSPISALCFDPSGTLLVTASVY--------GNNINIFRIMPSCMRSGSGNHKY  413 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i~~~~-----aH~~~IsaLaFSpdG~lLATaS~d--------Gt~IrVWdi~~~~~~~~sG~~~~  413 (765)
                      .+|.+.+||+.+++....+.     .|...|.++.|||||++||.++..        ...+.|||+..       +    
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~-------~----  102 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-------R----  102 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-------T----
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC-------C----
Confidence            46789999999998766454     455789999999999999998641        12467899865       2    


Q ss_pred             ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                             .+..+. + +...+..+.|||||++||... ++.+.+|++...
T Consensus       103 -------~~~~l~-~-~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g  142 (470)
T d2bgra1         103 -------QLITEE-R-IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL  142 (470)
T ss_dssp             -------EECCSS-C-CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             -------cccccc-c-CCccccccccccCcceeeEee-cccceEEECCCC
Confidence                   233332 2 234588999999999999865 667899987643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.90  E-value=0.0025  Score=66.35  Aligned_cols=79  Identities=14%  Similarity=0.181  Sum_probs=48.7

Q ss_pred             CeEEEEECCCCCEEEEEEcCCC-----EEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc-ccccEEEEEEcc-CC
Q 004255          371 PISALCFDPSGTLLVTASVYGN-----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-TSATIQDICFSH-YS  443 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt-----~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~-~~a~I~slaFSp-Dg  443 (765)
                      ....|.|+|||++|+++.....     .|-+|++...      |.        ......+..-. ....-.+++|+| ||
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~------g~--------~~~~~~~~~~~~~G~~p~~i~~~p~~G  321 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC------GS--------IEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT------SC--------EEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCC------Cc--------eeeEeEeeEEEcCCCCccEEEecCCCC
Confidence            3567899999999988754211     2667776431      20        01111111111 112346799998 89


Q ss_pred             CEEEEE-eCCCcEEEEeCCCC
Q 004255          444 QWIAIV-SSKGTCHVFVLSPF  463 (765)
Q Consensus       444 ~~Las~-S~dgTVhIwdl~~~  463 (765)
                      +||+++ ..+++|.||+++..
T Consensus       322 ~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         322 EWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEETT
T ss_pred             CEEEEEeCCCCeEEEEEEeCC
Confidence            988777 46799999998754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.67  E-value=0.0014  Score=70.75  Aligned_cols=110  Identities=10%  Similarity=0.003  Sum_probs=65.7

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE--------------EEEEeCCCCc---------cc
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN--------------INIFRIMPSC---------MR  405 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~--------------IrVWdi~~~~---------~~  405 (765)
                      ..+..+|..+.+...++.... ....++|+|||+++++++.+...              |.+++.....         ..
T Consensus       156 ~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v  234 (441)
T d1qnia2         156 TMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI  234 (441)
T ss_dssp             EEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC
T ss_pred             ceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEe
Confidence            467788999998888887654 46779999999999988764322              2233211000         00


Q ss_pred             CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE-EEeCCCcEEEEeCCC
Q 004255          406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA-IVSSKGTCHVFVLSP  462 (765)
Q Consensus       406 ~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~La-s~S~dgTVhIwdl~~  462 (765)
                      ...+....+.......++.+.-|.   .-..+++||||++++ ++..++||.|||+..
T Consensus       235 ~~~~v~vvd~~~~~~v~~~IPvgk---sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         235 GDSKVPVVDGRGESEFTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             TTCCCCEEECSSSCSSEEEECCBS---SCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CCCCcEEEEcccCCceEEEEeCCC---CccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            001111111111112333343332   235689999999875 567899999999975

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=0.02  Score=54.92  Aligned_cols=92  Identities=13%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 004255          350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI  429 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~  429 (765)
                      .|.+.++..+.. ..+..+........|+|+|+.++..+.++....+|.....     .+           .. ++..  
T Consensus       152 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~-----~~-----------~~-~~~~--  211 (269)
T d2hqsa1         152 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-----TG-----------GV-QVLS--  211 (269)
T ss_dssp             EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT-----TC-----------CE-EECC--
T ss_pred             eEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeecc-----cc-----------cc-eEee--
Confidence            355556655432 3344455667778999999999998887766666655331     01           11 2211  


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCC---cEEEEeCC
Q 004255          430 TSATIQDICFSHYSQWIAIVSSKG---TCHVFVLS  461 (765)
Q Consensus       430 ~~a~I~slaFSpDg~~Las~S~dg---TVhIwdl~  461 (765)
                      .........|||||++||-.+.++   .+++++++
T Consensus       212 ~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         212 STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            123456789999999998666543   46677765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.27  E-value=0.1  Score=51.10  Aligned_cols=96  Identities=16%  Similarity=0.192  Sum_probs=65.8

Q ss_pred             CCeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          348 AGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~--aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      .+.|++||.. ++.+.+|.  ++......|+++++|+++++-+..+..|.+|+-.        |          ..+..+
T Consensus       177 ~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--------G----------~~~~~~  237 (279)
T d1q7fa_         177 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------G----------QLISAL  237 (279)
T ss_dssp             GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------S----------CEEEEE
T ss_pred             ccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC--------C----------CEEEEE
Confidence            3567778754 45566663  3455568899999999887655445568999841        4          344455


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004255          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF  463 (765)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~  463 (765)
                      ..+......+.|++.+||+++ +++.++.|++|.....
T Consensus       238 ~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         238 ESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCC
T ss_pred             eCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeee
Confidence            433333357899999999754 5567899999998764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.05  E-value=0.037  Score=57.10  Aligned_cols=81  Identities=16%  Similarity=0.224  Sum_probs=55.2

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S  450 (765)
                      -+.+++|+|||++|+.++.....|.+|++...      |.        ......+...........++|+||++++.+..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~------g~--------~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~  211 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLAS------GE--------VELVGSVDAPDPGDHPRWVAMHPTGNYLYALM  211 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTT------SC--------EEEEEEEECSSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCC------Cc--------eeeccceeecCCCCceEEEEECCCCceEEEec
Confidence            36789999999999999875557888886431      21        01222222111123478899999999885554


Q ss_pred             -CCCcEEEEeCCCCCC
Q 004255          451 -SKGTCHVFVLSPFGG  465 (765)
Q Consensus       451 -~dgTVhIwdl~~~gg  465 (765)
                       .+++|.+|+++..+.
T Consensus       212 e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         212 EAGNRICEYVIDPATH  227 (365)
T ss_dssp             TTTTEEEEEEECTTTC
T ss_pred             cCCCEEEEEEecCCCc
Confidence             688999999986544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.19  E-value=0.69  Score=45.62  Aligned_cols=50  Identities=8%  Similarity=-0.112  Sum_probs=39.2

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC-CeEEEEeCCeEEEEECCCCce
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGLATQIYCFDALTLEN  223 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~-~~LaV~~~~~I~iwD~~t~~~  223 (765)
                      ++|.-||.++++. ..+.++..+.++.+.. ..|.++..+.|+.+|..+++.
T Consensus        40 ~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~   90 (295)
T d2ghsa1          40 RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVL   90 (295)
T ss_dssp             TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCE
T ss_pred             CEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEeCccEEeeccccee
Confidence            5899999998864 4677888888888754 456666778999999999874

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.53  E-value=1.4  Score=44.16  Aligned_cols=48  Identities=10%  Similarity=0.176  Sum_probs=41.3

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEE-ecCCeEEEEeCCeEEEEECCC
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVR-CSPRIVAVGLATQIYCFDALT  220 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~-~s~~~LaV~~~~~I~iwD~~t  220 (765)
                      ++++++|+.+.+.++.+.++..|.==+ .+++.|+...+..||=|++..
T Consensus        83 ~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVYHW~~~g  131 (327)
T d1utca2          83 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG  131 (327)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECSSEEEEEESSS
T ss_pred             CeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEcCCceEEEcccC
Confidence            589999999999999999998774444 478999999899999999853

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.51  E-value=1.1  Score=42.80  Aligned_cols=95  Identities=13%  Similarity=0.056  Sum_probs=55.0

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      +.|..+|.............-.....|+|+++|.++++... .+.|..++....      .          ..+.. ..+
T Consensus       161 ~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~-~~~i~~~~~~~~------~----------~~~~~-~~~  222 (260)
T d1rwia_         161 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN-TNQVVKLLAGST------T----------STVLP-FTG  222 (260)
T ss_dssp             TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT-TTEEEEECTTCS------C----------CEECC-CCS
T ss_pred             ccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC-CCEEEEEeCCCC------e----------EEEEc-cCC
Confidence            45566665544333222244455678999999998887766 444666654210      0          11111 111


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                        -....+|+|++||+.+++-..++.  |+.+.+.+.
T Consensus       223 --~~~P~~i~~d~~g~l~vad~~~~r--I~~i~~~~~  255 (260)
T d1rwia_         223 --LNTPLAVAVDSDRTVYVADRGNDR--VVKLTSLEH  255 (260)
T ss_dssp             --CCCEEEEEECTTCCEEEEEGGGTE--EEEECCCGG
T ss_pred             --CCCeEEEEEeCCCCEEEEECCCCE--EEEEeCCCC
Confidence              123678999999988777666664  455565543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.042  Score=58.88  Aligned_cols=99  Identities=15%  Similarity=0.141  Sum_probs=60.5

Q ss_pred             CCeEEEEECCCCcEEEEe--ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          348 AGIVVVKDFVTRAIISQF--KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~--~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      .|...|+|+.+++.....  ......+....|||||+.||-...  ..|.+.+...       +          ......
T Consensus        90 ~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~--~nl~~~~~~~-------~----------~~~~lt  150 (465)
T d1xfda1          90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVG-------K----------QAIRVV  150 (465)
T ss_dssp             CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSS-------S----------CCEEEE
T ss_pred             cccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEec--ceEEEEecCC-------C----------ceEEEe
Confidence            467889999988753322  233445667899999999998775  3466666532       1          011111


Q ss_pred             ecccccc----------------cEEEEEEccCCCEEEEEeCC-CcEEEEeCCCCCC
Q 004255          426 HRGITSA----------------TIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG  465 (765)
Q Consensus       426 ~rG~~~a----------------~I~slaFSpDg~~Las~S~d-gTVhIwdl~~~gg  465 (765)
                      ..|....                .-..+.|||||++||....| ..|..|.+..+++
T Consensus       151 ~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~  207 (465)
T d1xfda1         151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG  207 (465)
T ss_dssp             CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred             cccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccc
Confidence            1111100                01357799999999998754 4477777765443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=95.38  E-value=0.042  Score=54.71  Aligned_cols=85  Identities=22%  Similarity=0.306  Sum_probs=58.4

Q ss_pred             CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 004255          358 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI  437 (765)
Q Consensus       358 s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~sl  437 (765)
                      ..+++..|...+ .+..++++|||++++|... ++.|..||  +.      |.        ...+..     ....+.++
T Consensus        17 ~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~-~~~I~~i~--p~------g~--------~~~~~~-----~~~~~~gl   73 (302)
T d2p4oa1          17 PAKIITSFPVNT-FLENLASAPDGTIFVTNHE-VGEIVSIT--PD------GN--------QQIHAT-----VEGKVSGL   73 (302)
T ss_dssp             CEEEEEEECTTC-CEEEEEECTTSCEEEEETT-TTEEEEEC--TT------CC--------EEEEEE-----CSSEEEEE
T ss_pred             cccEEEECCCCC-CcCCEEECCCCCEEEEeCC-CCEEEEEe--CC------CC--------EEEEEc-----CCCCcceE
Confidence            345566675433 5788999999999998776 44455555  32      31        012222     12458999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCCC
Q 004255          438 CFSHYSQWIAIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       438 aFSpDg~~Las~S~dgTVhIwdl~~~gg  465 (765)
                      +|++||+++++...++.+.+|+.....+
T Consensus        74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          74 AFTSNGDLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             EEcCCCCeEEEecCCceEEEEEeccccc
Confidence            9999999999998999998888765443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=1.4  Score=41.07  Aligned_cols=51  Identities=12%  Similarity=-0.061  Sum_probs=37.0

Q ss_pred             CEEEEEECCCCeEEEEEeCCCCEEEEEecC--CeEEEEeCC----eEEEEECCCCce
Q 004255          173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLAT----QIYCFDALTLEN  223 (765)
Q Consensus       173 ~tV~lWdlktg~~v~tL~~~s~V~sV~~s~--~~LaV~~~~----~I~iwD~~t~~~  223 (765)
                      ..|.|.|...+.....++....+.+-+++|  +.||.....    .+++.+..++..
T Consensus        19 ~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~   75 (269)
T d2hqsa1          19 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV   75 (269)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             EEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce
Confidence            368888987666666667888899999998  677754332    478888877654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.58  E-value=0.84  Score=44.16  Aligned_cols=92  Identities=12%  Similarity=0.097  Sum_probs=61.9

Q ss_pred             eEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          350 IVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       350 ~V~IwDl~s~~~i~~~~-aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      .|.+++. .++....+. .+......++++++|.++++... ...+.+++..        |          ..+..+...
T Consensus        94 ~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~-~~~~~~~~~~--------g----------~~~~~~g~~  153 (279)
T d1q7fa_          94 QIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECK-VMRVIIFDQN--------G----------NVLHKFGCS  153 (279)
T ss_dssp             EEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETT-TTEEEEECTT--------S----------CEEEEEECT
T ss_pred             ccccccc-cccceeecCCCcccccceeccccCCcEEEEeec-cceeeEeccC--------C----------ceeeccccc
Confidence            4555554 344444443 34456778999999998877655 4557777642        3          345555333


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       429 ~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                      ........+++.++|+.+++....+.|++|+.+
T Consensus       154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~  186 (279)
T d1q7fa_         154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE  186 (279)
T ss_dssp             TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             ccccccceeeeccceeEEeeeccccceeeeecC
Confidence            233468899999999999999999999999854

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.53  E-value=0.11  Score=49.35  Aligned_cols=85  Identities=9%  Similarity=0.085  Sum_probs=54.7

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CC----EEEEEeCCCCcccCCCCCCccccCCcceEE
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-GN----NINIFRIMPSCMRSGSGNHKYDWNSSHVHL  422 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~d-Gt----~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l  422 (765)
                      +|.|.+.|+.+++. ..|..+...+...+|||||+.||-.+.. +.    .|.++++..       |           ..
T Consensus        20 ~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~-------g-----------~~   80 (281)
T d1k32a2          20 CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-------G-----------EI   80 (281)
T ss_dssp             TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-------T-----------EE
T ss_pred             CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC-------C-----------ce
Confidence            46788889998875 4677777788999999999999866532 21    244555432       2           22


Q ss_pred             EEEecc-----cccccEEEEEEccCCCEEEEEeC
Q 004255          423 YKLHRG-----ITSATIQDICFSHYSQWIAIVSS  451 (765)
Q Consensus       423 ~~l~rG-----~~~a~I~slaFSpDg~~Las~S~  451 (765)
                      ..+...     .........+|+|||+.|+....
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            222110     00112467899999999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=94.34  E-value=0.12  Score=51.28  Aligned_cols=98  Identities=17%  Similarity=0.204  Sum_probs=64.6

Q ss_pred             CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL  425 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l  425 (765)
                      ..+++|..||....  ...+......+.+|+|+|||+++++....+. +.+|+....     .+        ....+..+
T Consensus        46 ~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~-~~~~~~~~~-----~~--------~~~~~~~~  109 (302)
T d2p4oa1          46 HEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADS-IPVVSLVKS-----DG--------TVETLLTL  109 (302)
T ss_dssp             TTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTS-CEEEEEECT-----TS--------CEEEEEEC
T ss_pred             CCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCce-EEEEEeccc-----cc--------ceeecccc
Confidence            34677777775432  3445556678999999999999988777554 777776431     01        11222222


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004255          426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP  462 (765)
Q Consensus       426 ~rG~~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~~  462 (765)
                      .   ......++++.+||+++++.+.++.+..++...
T Consensus       110 ~---~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~  143 (302)
T d2p4oa1         110 P---DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  143 (302)
T ss_dssp             T---TCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             C---CccccceeEEccCCCEEeeccccccceeeeccC
Confidence            1   223578999999999998888888776666543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.09  Score=56.15  Aligned_cols=97  Identities=10%  Similarity=0.036  Sum_probs=62.2

Q ss_pred             CCCCeEEEEECCCCcEEEEeccC---CCCeEEEEECCCCCEEEEEEcC--------CCEEEEEeCCCCcccCCCCCCccc
Q 004255          346 DNAGIVVVKDFVTRAIISQFKAH---TSPISALCFDPSGTLLVTASVY--------GNNINIFRIMPSCMRSGSGNHKYD  414 (765)
Q Consensus       346 ~~dG~V~IwDl~s~~~i~~~~aH---~~~IsaLaFSpdG~lLATaS~d--------Gt~IrVWdi~~~~~~~~sG~~~~~  414 (765)
                      ..+|.|.+||+.+++....+..+   .-.+....|||||++|+.+..-        ...+-|+|+..       +     
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~-------~-----  101 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-------G-----  101 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-------C-----
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC-------C-----
Confidence            46788999999988754444432   3467788999999998876531        12466778754       2     


Q ss_pred             cCCcceEEEEEeccc-ccccEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004255          415 WNSSHVHLYKLHRGI-TSATIQDICFSHYSQWIAIVSSKGTCHVFVLS  461 (765)
Q Consensus       415 ~~~s~~~l~~l~rG~-~~a~I~slaFSpDg~~Las~S~dgTVhIwdl~  461 (765)
                            ....+.... ....+....|||||++||-.. ++.+.+.+..
T Consensus       102 ------~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~  142 (465)
T d1xfda1         102 ------DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHV  142 (465)
T ss_dssp             ------CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSS
T ss_pred             ------ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecC
Confidence                  111221111 112355688999999999886 4556666654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=90.72  E-value=1  Score=44.70  Aligned_cols=99  Identities=16%  Similarity=0.164  Sum_probs=61.8

Q ss_pred             CCCeEEEEECCCCcEE------EEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 004255          347 NAGIVVVKDFVTRAII------SQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH  419 (765)
Q Consensus       347 ~dG~V~IwDl~s~~~i------~~~~a-H~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~  419 (765)
                      ..+.|..||+.....+      ..+.+ +......|+++.+|++.++... +..|.+||-..       |          
T Consensus       196 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-~g~I~~~dp~~-------g----------  257 (314)
T d1pjxa_         196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-SSHIEVFGPDG-------G----------  257 (314)
T ss_dssp             TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-TTEEEEECTTC-------B----------
T ss_pred             cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-CCEEEEEeCCC-------C----------
Confidence            4567777776543222      22222 2223457999999998877655 45688998532       2          


Q ss_pred             eEEEEEecccccccEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCCC
Q 004255          420 VHLYKLHRGITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLSPFGG  465 (765)
Q Consensus       420 ~~l~~l~rG~~~a~I~slaFSpDg~~L-as~S~dgTVhIwdl~~~gg  465 (765)
                      ..+..+.-  ......+|+|.||++.| ++.+.+|+|..+++...|.
T Consensus       258 ~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         258 QPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             SCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred             EEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence            12222221  12357899999999855 5556778888888877664

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.43  E-value=0.3  Score=46.13  Aligned_cols=69  Identities=16%  Similarity=0.255  Sum_probs=44.6

Q ss_pred             EECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-
Q 004255          376 CFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-  452 (765)
Q Consensus       376 aFSpd--G~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~d-  452 (765)
                      ..|||  |+.+|-.+. |. |.+.|+..       |           ....|..+  ...+...+|||||++||-.+.+ 
T Consensus         5 ~~sPdi~G~~v~f~~~-~d-l~~~d~~~-------g-----------~~~~Lt~~--~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DD-LWEHDLKS-------G-----------STRKIVSN--LGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETTEEEEEET-TE-EEEEETTT-------C-----------CEEEEECS--SSEEEEEEECTTSSEEEEEEEES
T ss_pred             ccCCCCCCCEEEEEeC-Cc-EEEEECCC-------C-----------CEEEEecC--CCcccCEEECCCCCEEEEEEeeC
Confidence            46799  999998776 53 66668743       2           23345433  2457889999999999966432 


Q ss_pred             ---CcEEEEeCCCCCCC
Q 004255          453 ---GTCHVFVLSPFGGD  466 (765)
Q Consensus       453 ---gTVhIwdl~~~gg~  466 (765)
                         ....||-+...++.
T Consensus        63 ~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2          63 SSLNTADLYFYNGENGE   79 (281)
T ss_dssp             TTCCEEEEEEEETTTTE
T ss_pred             CCCCceEEEEEEecCCc
Confidence               23456666555554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.29  E-value=3.9  Score=40.92  Aligned_cols=195  Identities=12%  Similarity=0.175  Sum_probs=108.7

Q ss_pred             CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 004255          349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG  428 (765)
Q Consensus       349 G~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG  428 (765)
                      .+++|||+++++.++.+.-. .+|..-.|=.+. .|+--.  ++.|.=|++.        |.      ....++++.+.-
T Consensus        83 ~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT--~taVYHW~~~--------g~------s~P~k~fdR~~~  144 (327)
T d1utca2          83 KTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT--DNAVYHWSME--------GE------SQPVKMFDRHSS  144 (327)
T ss_dssp             TEEEEEETTTTEEEEEEECS-SCCCEEEESSSS-EEEEEC--SSEEEEEESS--------SS------CCCEEEEECCGG
T ss_pred             CeEEEEehhHhhhhceEEcC-CCcEEEEecCCC-EEEEEc--CCceEEEccc--------CC------CCchhhhhhccc
Confidence            47999999999888776654 467777775544 444433  3468889983        21      112455443322


Q ss_pred             cccccEEEEEEccCCCEEEEEeC-------CCcEEEEeCCCCCCCcccccccCCCCCCccccccCCCcccCCCCCccCCc
Q 004255          429 ITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQC  501 (765)
Q Consensus       429 ~~~a~I~slaFSpDg~~Las~S~-------dgTVhIwdl~~~gg~~~~~~h~~~~~~~~~~p~~~l~~~~~s~~~~~q~~  501 (765)
                      ..+..|..-.-++|.+|++..+-       .|.+.||.++. +..+.+.+|...                     |.+..
T Consensus       145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~---------------------F~~~~  202 (327)
T d1utca2         145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAAS---------------------FAQFK  202 (327)
T ss_dssp             GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEE---------------------EEEEC
T ss_pred             ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeee---------------------eEEEE
Confidence            22346888899999999887642       36788998875 445567777521                     22222


Q ss_pred             CC-CCCCeeeeeeeeeeeCCCCcccccccccccccCccccccceeeeecccCcccccccccccc-CccccEEEEcCCccE
Q 004255          502 VL-PPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT-NSLEHLLVYTPSGYV  579 (765)
Q Consensus       502 ~~-~~~~~~l~~~~~i~~~~~~w~~~~~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~~~~~-~~~~~Llv~s~~G~l  579 (765)
                      ++ .+.|..|-..+. |....+=+ .+-.-....++....|.. ..++|-..-+...-|+...+ ++-+=++|.|--|++
T Consensus       203 ~~g~~~~~~lf~fa~-r~~~~~kL-hIiEig~~~~g~~~f~kk-~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i  279 (327)
T d1utca2         203 MEGNAEESTLFCFAV-RGQAGGKL-HIIEVGTPPTGNQPFPKK-AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  279 (327)
T ss_dssp             CTTCSSCEEEEEEEE-EETTEEEE-EEEECSCCCTTCCCCCCE-EEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred             cCCCCCCceEEEEEE-CCCCCcEE-EEEEcCCCccCCCCCcce-eEEEECCccccCCcEEEEEeeccCCEEEEEecCcEE
Confidence            21 122333333221 21111000 000001111121123333 56788776565444432222 455669999999999


Q ss_pred             EEEeccc
Q 004255          580 VQHELLP  586 (765)
Q Consensus       580 ~~y~l~p  586 (765)
                      +.|+|..
T Consensus       280 ~lyDleT  286 (327)
T d1utca2         280 HLYDLET  286 (327)
T ss_dssp             EEEETTT
T ss_pred             EEEEccc
Confidence            9999965

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.66  E-value=12  Score=36.46  Aligned_cols=77  Identities=10%  Similarity=0.156  Sum_probs=48.4

Q ss_pred             eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 004255          372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS  451 (765)
Q Consensus       372 IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S~  451 (765)
                      -+.|+|+|||+.|..+....+.|..||+...      |....   ...........+  ...-..|++..||+..++...
T Consensus       179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~------g~~~~---~~~~~~~~~~~~--~~~PdGl~vD~~G~l~Va~~~  247 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANRLHRIALEDD------GVTIQ---PFGATIPYYFTG--HEGPDSCCIDSDDNLYVAMYG  247 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTT------SSSEE---EEEEEEEEECCS--SSEEEEEEEBTTCCEEEEEET
T ss_pred             eeeeeeccccceEEEecccCCceEEEEEcCC------Cceec---cccceeeeccCC--ccceeeeeEcCCCCEEEEEcC
Confidence            4679999999977666655667999988542      21000   000011111111  112567999999998888888


Q ss_pred             CCcEEEEe
Q 004255          452 KGTCHVFV  459 (765)
Q Consensus       452 dgTVhIwd  459 (765)
                      .+.|.+|+
T Consensus       248 ~g~V~~~~  255 (319)
T d2dg1a1         248 QGRVLVFN  255 (319)
T ss_dssp             TTEEEEEC
T ss_pred             CCEEEEEC
Confidence            99999887

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=83.98  E-value=1.7  Score=43.11  Aligned_cols=95  Identities=14%  Similarity=0.149  Sum_probs=60.8

Q ss_pred             eEEEEECCCCcEE--E-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 004255          350 IVVVKDFVTRAII--S-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH  426 (765)
Q Consensus       350 ~V~IwDl~s~~~i--~-~~~aH~~~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~  426 (765)
                      .+.+||..+++-.  . .-..|..-..+.++.++|++++.++.+...+.+||.....           |    ..+-.+.
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~-----------w----~~~~~~~  117 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS-----------W----IPGPDMQ  117 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE-----------E----EECCCCS
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc-----------c----ccccccc
Confidence            4778999987532  1 2234444456778999999999998877789999985420           1    0000110


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCC------CcEEEEeCCC
Q 004255          427 RGITSATIQDICFSHYSQWIAIVSSK------GTCHVFVLSP  462 (765)
Q Consensus       427 rG~~~a~I~slaFSpDg~~Las~S~d------gTVhIwdl~~  462 (765)
                      .   ...-...+..+||+.++.++.+      .++.+||+..
T Consensus       118 ~---~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         118 V---ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             S---CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             c---cccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            0   0011246778899999988753      3688898765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=82.55  E-value=27  Score=36.16  Aligned_cols=112  Identities=13%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--------------CEEEEEeCCCCcc--cCC----
Q 004255          348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--------------NNINIFRIMPSCM--RSG----  407 (765)
Q Consensus       348 dG~V~IwDl~s~~~i~~~~aH~~~IsaLaFSpdG~lLATaS~dG--------------t~IrVWdi~~~~~--~~~----  407 (765)
                      .+++.++|..+.+...++.-- ..+..+++++||+++++.|.+.              ..+.++++.....  ..+    
T Consensus       172 ~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~e  250 (459)
T d1fwxa2         172 VNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  250 (459)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             ceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEE
Confidence            357778899998887776532 3456789999999998877421              1245555421000  000    


Q ss_pred             -CCCCccccCC--cceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC
Q 004255          408 -SGNHKYDWNS--SHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF  463 (765)
Q Consensus       408 -sG~~~~~~~~--s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S-~dgTVhIwdl~~~  463 (765)
                       .|....+...  ....+..+--+   ..-..+.+||||+|+++++ .+.|+-|+|+...
T Consensus       251 ingV~VVD~~~~~~~~v~~yIPVp---KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         251 LNGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             ETTEEEEECSGG--CSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             eCCceeecccccCCcceeEEEecC---CCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence             0100000000  00111111111   1124689999999987776 4889999999753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.17  E-value=4.5  Score=38.17  Aligned_cols=71  Identities=11%  Similarity=0.056  Sum_probs=47.8

Q ss_pred             CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 004255          371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS  450 (765)
Q Consensus       371 ~IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~Las~S  450 (765)
                      ....|+++++|+++++... +..|..||....                  .+..+... .......|+|.++|+.+++..
T Consensus       141 ~p~~i~~~~~g~~~v~~~~-~~~i~~~d~~~~------------------~~~~~~~~-~~~~p~gi~~d~~g~l~vsd~  200 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTD-NNRVVKLEAESN------------------NQVVLPFT-DITAPWGIAVDEAGTVYVTEH  200 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGG-GTEEEEECTTTC------------------CEEECCCS-SCCSEEEEEECTTCCEEEEET
T ss_pred             CcceeeecCCCCEeeeccc-cccccccccccc------------------eeeeeecc-ccCCCccceeeeeeeeeeeec
Confidence            4478999999998877666 456888886431                  11222111 112367899999999888888


Q ss_pred             CCCcEEEEeCC
Q 004255          451 SKGTCHVFVLS  461 (765)
Q Consensus       451 ~dgTVhIwdl~  461 (765)
                      ..+.|..++..
T Consensus       201 ~~~~i~~~~~~  211 (260)
T d1rwia_         201 NTNQVVKLLAG  211 (260)
T ss_dssp             TTTEEEEECTT
T ss_pred             CCCEEEEEeCC
Confidence            88877776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.94  E-value=26  Score=33.77  Aligned_cols=71  Identities=14%  Similarity=0.172  Sum_probs=45.8

Q ss_pred             eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc----ccccEEEEEEccCCCEEE
Q 004255          372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----TSATIQDICFSHYSQWIA  447 (765)
Q Consensus       372 IsaLaFSpdG~lLATaS~dGt~IrVWdi~~~~~~~~sG~~~~~~~~s~~~l~~l~rG~----~~a~I~slaFSpDg~~La  447 (765)
                      -..|+++++|++.++... +..|.+||- .       |          +.+.++.--.    ....+++++|.+++..|.
T Consensus       230 PdGl~vD~~G~l~Va~~~-~g~V~~~~p-~-------G----------~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~  290 (319)
T d2dg1a1         230 PDSCCIDSDDNLYVAMYG-QGRVLVFNK-R-------G----------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI  290 (319)
T ss_dssp             EEEEEEBTTCCEEEEEET-TTEEEEECT-T-------S----------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             eeeeeEcCCCCEEEEEcC-CCEEEEECC-C-------C----------cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEE
Confidence            356999999998877766 456889984 1       4          3555543110    112478999999988877


Q ss_pred             EEeCC----CcEEEEeCC
Q 004255          448 IVSSK----GTCHVFVLS  461 (765)
Q Consensus       448 s~S~d----gTVhIwdl~  461 (765)
                      +.+.+    +.-.||.++
T Consensus       291 ~t~~~~~~~~~g~l~~~~  308 (319)
T d2dg1a1         291 ICSNDIEMGGGSMLYTVN  308 (319)
T ss_dssp             EEEECGGGTCCEEEEEEE
T ss_pred             EEcCCCCcCCceeEEEEe
Confidence            76643    334555554