Citrus Sinensis ID: 004263
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 765 | 2.2.26 [Sep-21-2011] | |||||||
| Q42699 | 765 | 5-methyltetrahydropteroyl | N/A | no | 1.0 | 1.0 | 0.879 | 0.0 | |
| P93263 | 765 | 5-methyltetrahydropteroyl | N/A | no | 1.0 | 1.0 | 0.875 | 0.0 | |
| O50008 | 765 | 5-methyltetrahydropteroyl | yes | no | 1.0 | 1.0 | 0.869 | 0.0 | |
| Q42662 | 764 | 5-methyltetrahydropteroyl | N/A | no | 0.998 | 1.0 | 0.867 | 0.0 | |
| Q6N765 | 788 | 5-methyltetrahydropteroyl | yes | no | 0.983 | 0.954 | 0.525 | 0.0 | |
| Q87BY8 | 758 | 5-methyltetrahydropteroyl | yes | no | 0.976 | 0.985 | 0.530 | 0.0 | |
| B2I621 | 758 | 5-methyltetrahydropteroyl | yes | no | 0.976 | 0.985 | 0.530 | 0.0 | |
| B3QGC4 | 788 | 5-methyltetrahydropteroyl | yes | no | 0.983 | 0.954 | 0.525 | 0.0 | |
| Q9PB72 | 758 | 5-methyltetrahydropteroyl | yes | no | 0.976 | 0.985 | 0.525 | 0.0 | |
| B0U3F5 | 758 | 5-methyltetrahydropteroyl | yes | no | 0.976 | 0.985 | 0.528 | 0.0 |
| >sp|Q42699|METE_CATRO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1 | Back alignment and function desciption |
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Score = 1424 bits (3685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/765 (87%), Positives = 724/765 (94%)
Query: 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSN 60
MASH+VGYPRMGPKRELKFALESFWD KSSA++LQ VAADLR+SIW QMADAGIK+IPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLQKVAADLRSSIWKQMADAGIKYIPSN 60
Query: 61 TFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
TFSYYDQVLDT MLGAVPPRY++ GGEIGFD YFSMARGNASVPAMEMTKWFDTNYHYI
Sbjct: 61 TFSYYDQVLDTATMLGAVPPRYNFAGGEIGFDTYFSMARGNASVPAMEMTKWFDTNYHYI 120
Query: 121 VPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSL 180
VPELGP+VNFSYASHKAV EYKEAK LG++TVPVLVGPV++LLLSKPAKGVEK+F LLSL
Sbjct: 121 VPELGPEVNFSYASHKAVNEYKEAKELGVDTVPVLVGPVTFLLLSKPAKGVEKTFPLLSL 180
Query: 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240
+DKI+PVYKEV+ ELKAAGA+WIQFDEPTLVLDL+SH+L+AF+ AYSEL+S+LSGLNV++
Sbjct: 181 LDKILPVYKEVIGELKAAGASWIQFDEPTLVLDLESHQLEAFTKAYSELESTLSGLNVIV 240
Query: 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWA 300
ETYFAD+PAETYKILT+LKGVTGFGFDL+RG KTLDLIK FP GKYLFAGVVDGRNIWA
Sbjct: 241 ETYFADIPAETYKILTALKGVTGFGFDLVRGAKTLDLIKGGFPSGKYLFAGVVDGRNIWA 300
Query: 301 NDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVE 360
NDLA+SL+TLQ L G VGKDK+VVSTSCSLLHTAVDL NE KLD+EIKSWLAFAAQKVVE
Sbjct: 301 NDLAASLSTLQSLEGIVGKDKLVVSTSCSLLHTAVDLVNEPKLDKEIKSWLAFAAQKVVE 360
Query: 361 VNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARL 420
VNALAKAL+G+KDEA+FS NAAAQASRKSSPRVTN+AVQK AAAL+GSDHRRAT VSARL
Sbjct: 361 VNALAKALAGEKDEAFFSENAAAQASRKSSPRVTNQAVQKAAAALRGSDHRRATTVSARL 420
Query: 421 DAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEE 480
DAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKKISEDDYVK IKEEI+ VVKLQEE
Sbjct: 421 DAQQKKLNLPVLPTTTIGSFPQTLELRRVRREYKAKKISEDDYVKAIKEEISKVVKLQEE 480
Query: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTV 540
LDIDVLVHGEPERNDMVEYFGEQLSGFAFT NGWVQSYGSRCVKPPIIYGDVSRP MTV
Sbjct: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPNPMTV 540
Query: 541 FWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGIT 600
FWS AQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGI
Sbjct: 541 FWSQTAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGIN 600
Query: 601 VIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSI 660
VIQIDEAALREGLPLRK+E FYL WAVHSFRITN +QDTTQ+HTHMCYSNFNDIIHSI
Sbjct: 601 VIQIDEAALREGLPLRKAEHAFYLDWAVHSFRITNLPLQDTTQIHTHMCYSNFNDIIHSI 660
Query: 661 MDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLA 720
+DMDADV+TIENSRS EKLLSVFREGVKY AGIGPGVYDIHSPRIPSTEEIADRINKMLA
Sbjct: 661 IDMDADVMTIENSRSSEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 720
Query: 721 VLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLASAK 765
VL++NILWVNPDCGLKTRKY+EVKPAL NMV+AAKL+RTQLASAK
Sbjct: 721 VLDTNILWVNPDCGLKTRKYAEVKPALENMVSAAKLIRTQLASAK 765
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Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation. Catharanthus roseus (taxid: 4058) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|P93263|METE_MESCR 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1 | Back alignment and function description |
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| >sp|O50008|METE_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1 | Back alignment and function description |
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| >sp|Q42662|METE_SOLSC 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6N765|METE_RHOPA 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=metE PE=3 SV=1 | Back alignment and function description |
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| >sp|Q87BY8|METE_XYLFT 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=metE PE=3 SV=1 | Back alignment and function description |
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| >sp|B2I621|METE_XYLF2 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa (strain M23) GN=metE PE=3 SV=1 | Back alignment and function description |
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| >sp|B3QGC4|METE_RHOPT 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=metE PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9PB72|METE_XYLFA 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa (strain 9a5c) GN=metE PE=3 SV=1 | Back alignment and function description |
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| >sp|B0U3F5|METE_XYLFM 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa (strain M12) GN=metE PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 765 | ||||||
| 449452654 | 827 | PREDICTED: 5-methyltetrahydropteroyltrig | 1.0 | 0.925 | 0.904 | 0.0 | |
| 255569484 | 765 | 5-methyltetrahydropteroyltriglutamate--h | 1.0 | 1.0 | 0.904 | 0.0 | |
| 151347486 | 765 | methionine synthase [Carica papaya] | 1.0 | 1.0 | 0.901 | 0.0 | |
| 255549601 | 815 | 5-methyltetrahydropteroyltriglutamate--h | 1.0 | 0.938 | 0.900 | 0.0 | |
| 225439223 | 765 | PREDICTED: 5-methyltetrahydropteroyltrig | 1.0 | 1.0 | 0.895 | 0.0 | |
| 296084004 | 804 | unnamed protein product [Vitis vinifera] | 1.0 | 0.951 | 0.900 | 0.0 | |
| 224131686 | 765 | vitamin-b12 independent methionine synth | 1.0 | 1.0 | 0.899 | 0.0 | |
| 225436073 | 765 | PREDICTED: 5-methyltetrahydropteroyltrig | 1.0 | 1.0 | 0.900 | 0.0 | |
| 356547867 | 803 | PREDICTED: 5-methyltetrahydropteroyltrig | 1.0 | 0.952 | 0.898 | 0.0 | |
| 224146039 | 765 | vitamin-b12 independent methionine synth | 1.0 | 1.0 | 0.891 | 0.0 |
| >gi|449452654|ref|XP_004144074.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 1457 bits (3773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 692/765 (90%), Positives = 731/765 (95%)
Query: 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSN 60
MASH+VGYPR+GPKRELKFALESFWDGKSSAD+LQ VAADLR+SIW QMA+AGIKFIPSN
Sbjct: 63 MASHIVGYPRIGPKRELKFALESFWDGKSSADDLQKVAADLRSSIWKQMAEAGIKFIPSN 122
Query: 61 TFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
TFSYYDQVLDT MLGAVP RY WNGGEIGFD+YFSMARGNASVPAMEMTKWFDTNYHYI
Sbjct: 123 TFSYYDQVLDTATMLGAVPSRYGWNGGEIGFDIYFSMARGNASVPAMEMTKWFDTNYHYI 182
Query: 121 VPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSL 180
VPEL P+ F+YASHKAV E+KEAKALG+ETVPVLVGPVS+LLLSKPAKGVEKSFSLLSL
Sbjct: 183 VPELSPEDKFTYASHKAVNEFKEAKALGVETVPVLVGPVSFLLLSKPAKGVEKSFSLLSL 242
Query: 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240
IDKI+PVYKEVV+ELKAAGATWIQFDEPTLV DLD+H LQAF+ AYSEL+S+LSGLNVLI
Sbjct: 243 IDKILPVYKEVVSELKAAGATWIQFDEPTLVKDLDAHHLQAFTQAYSELESTLSGLNVLI 302
Query: 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWA 300
ETYFADVPAE YK LTSLKGV+G+GFDL+RGT+T+DLIK FP GKYLFAGVVDGRNIW+
Sbjct: 303 ETYFADVPAEAYKTLTSLKGVSGYGFDLVRGTQTVDLIKGGFPSGKYLFAGVVDGRNIWS 362
Query: 301 NDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVE 360
NDL +S+TTL+ L VGK+K+VVSTSCSLLHTAVDL NETKLD EIKSWLAFAAQKVVE
Sbjct: 363 NDLQASITTLEALENVVGKEKIVVSTSCSLLHTAVDLVNETKLDDEIKSWLAFAAQKVVE 422
Query: 361 VNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARL 420
VNALAKALSG KDEAYFSSNAAAQASRKSSPRVTNEAVQK AAALKGSDHRR+TNVSARL
Sbjct: 423 VNALAKALSGHKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRSTNVSARL 482
Query: 421 DAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEE 480
DAQQKKLNLP LPTTTIGSFPQTMDLRRVRREFKAKKISE+DYV +IKEEIN VV+LQEE
Sbjct: 483 DAQQKKLNLPMLPTTTIGSFPQTMDLRRVRREFKAKKISEEDYVSSIKEEINKVVQLQEE 542
Query: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTV 540
LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPK MTV
Sbjct: 543 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTV 602
Query: 541 FWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGIT 600
FWS+MAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGIT
Sbjct: 603 FWSTMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGIT 662
Query: 601 VIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSI 660
VIQIDEAALREGLPLRKSE++FYL WAVHSFRITNCGVQDTTQ+HTHMCYSNFNDIIHSI
Sbjct: 663 VIQIDEAALREGLPLRKSEENFYLNWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSI 722
Query: 661 MDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLA 720
+DMDADVITIENSRSDEKLLSVFREGVKY AGIGPGVYDIHSPRIPSTEEIADRINKMLA
Sbjct: 723 IDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLA 782
Query: 721 VLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLASAK 765
VLESNILWVNPDCGLKTRKY+EVKPAL NMVAAAKLLR+QLASAK
Sbjct: 783 VLESNILWVNPDCGLKTRKYTEVKPALLNMVAAAKLLRSQLASAK 827
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569484|ref|XP_002525709.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] gi|223535009|gb|EEF36692.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|151347486|gb|ABS01352.1| methionine synthase [Carica papaya] | Back alignment and taxonomy information |
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| >gi|255549601|ref|XP_002515852.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] gi|223545007|gb|EEF46521.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|225439223|ref|XP_002276438.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296084004|emb|CBI24392.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224131686|ref|XP_002328083.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222837598|gb|EEE75963.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225436073|ref|XP_002276908.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356547867|ref|XP_003542326.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224146039|ref|XP_002325856.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222862731|gb|EEF00238.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 765 | ||||||
| TAIR|locus:2170318 | 765 | ATMS1 "methionine synthesis 1" | 1.0 | 1.0 | 0.869 | 0.0 | |
| TAIR|locus:2079434 | 765 | MS2 "methionine synthase 2" [A | 1.0 | 1.0 | 0.858 | 0.0 | |
| TAIR|locus:2147147 | 812 | MS3 "methionine synthase 3" [A | 0.994 | 0.937 | 0.838 | 0.0 | |
| UNIPROTKB|P65340 | 759 | metE "5-methyltetrahydropteroy | 0.968 | 0.976 | 0.511 | 3.9e-195 | |
| UNIPROTKB|G4ML75 | 766 | MGG_06712 "5-methyltetrahydrop | 0.983 | 0.981 | 0.493 | 3.2e-191 | |
| TIGR_CMR|CBU_2048 | 775 | CBU_2048 "5-methyltetrahydropt | 0.984 | 0.971 | 0.496 | 9.8e-190 | |
| DICTYBASE|DDB_G0279211 | 825 | DDB_G0279211 "5-methyltetrahyd | 0.504 | 0.467 | 0.583 | 4.7e-189 | |
| ASPGD|ASPL0000077429 | 774 | metH [Emericella nidulans (tax | 0.985 | 0.974 | 0.479 | 3.5e-185 | |
| UNIPROTKB|P25665 | 753 | metE "cobalamin-independent ho | 0.971 | 0.986 | 0.497 | 3.5e-185 | |
| CGD|CAL0002475 | 767 | MET6 [Candida albicans (taxid: | 0.977 | 0.975 | 0.499 | 5.2e-184 |
| TAIR|locus:2170318 ATMS1 "methionine synthesis 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3482 (1230.8 bits), Expect = 0., P = 0.
Identities = 665/765 (86%), Positives = 715/765 (93%)
Query: 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSN 60
MASH+VGYPRMGPKRELKFALESFWDGKS+A++LQ V+ADLR+SIW QM+ AG KFIPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSN 60
Query: 61 TFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
TF++YDQVLDTTAMLGAVPPRY + GGEIG DVYFSMARGNASVPAMEMTKWFDTNYHYI
Sbjct: 61 TFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
Query: 121 VPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSL 180
VPELGP+VNFSYASHKAV EYKEAKALG++TVPVLVGPVSYLLLSK AKGV+KSF LLSL
Sbjct: 121 VPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSL 180
Query: 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240
+ KI+P+YKEV+ ELKAAGATWIQ DEP LV+DL+ KLQAF+ AY+EL+S+LSGLNVL+
Sbjct: 181 LPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLV 240
Query: 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWA 300
ETYFAD+PAE YK LTSLKGVT FGFDL+RGTKTLDL+K FP GKYLFAGVVDGRNIWA
Sbjct: 241 ETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWA 300
Query: 301 NDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVE 360
ND A+SL+TLQ L G VGKDK+VVSTSCSLLHTAVDL NETKLD EIKSWLAFAAQKVVE
Sbjct: 301 NDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVE 360
Query: 361 VNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARL 420
VNALAKAL+GQKDEA FS+NAAA ASR+SSPRVTNE VQK AAALKGSDHRRATNVSARL
Sbjct: 361 VNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARL 420
Query: 421 DAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEE 480
DAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKK+SE+DYVK IKEEI VV LQEE
Sbjct: 421 DAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEE 480
Query: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTV 540
LDIDVLVHGEPERNDMVEYFGEQLSGFAFT NGWVQSYGSRCVKPP+IYGDVSRPKAMTV
Sbjct: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTV 540
Query: 541 FWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGIT 600
FWS+MAQSMT RPMKGMLTGPVTILNWSFVRNDQPR ETCYQIALAIKDEVEDLEK GI
Sbjct: 541 FWSAMAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIG 600
Query: 601 VIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSI 660
VIQIDEAALREGLPLRKSE FYL WAVHSFRITNCGVQD+TQ+HTHMCYS+FNDIIHSI
Sbjct: 601 VIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSI 660
Query: 661 MDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLA 720
+DMDADVITIENSRSDEKLLSVFREGVKY AGIGPGVYDIHSPRIPS+EEIADR+NKMLA
Sbjct: 661 IDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLA 720
Query: 721 VLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLASAK 765
VLE NILWVNPDCGLKTRKY+EVKPAL NMV AAKL+R+QLASAK
Sbjct: 721 VLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765
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| TAIR|locus:2079434 MS2 "methionine synthase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2147147 MS3 "methionine synthase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P65340 metE "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4ML75 MGG_06712 "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CBU_2048 CBU_2048 "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0279211 DDB_G0279211 "5-methyltetrahydropteroyltriglutamate-homocysteine-S-methyltransfe rase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000077429 metH [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P25665 metE "cobalamin-independent homocysteine transmethylase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0002475 MET6 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B2UJ81 | METE_RALPJ | 2, ., 1, ., 1, ., 1, 4 | 0.5136 | 0.9843 | 0.9703 | yes | no |
| P65340 | METE_MYCTU | 2, ., 1, ., 1, ., 1, 4 | 0.5066 | 0.9699 | 0.9776 | yes | no |
| P65341 | METE_MYCBO | 2, ., 1, ., 1, ., 1, 4 | 0.5066 | 0.9699 | 0.9776 | yes | no |
| Q9F187 | METE_CUPNE | 2, ., 1, ., 1, ., 1, 4 | 0.5091 | 0.9816 | 0.9482 | yes | no |
| B2I621 | METE_XYLF2 | 2, ., 1, ., 1, ., 1, 4 | 0.5302 | 0.9764 | 0.9854 | yes | no |
| Q6N765 | METE_RHOPA | 2, ., 1, ., 1, ., 1, 4 | 0.5256 | 0.9830 | 0.9543 | yes | no |
| B4EJ37 | METE_BURCJ | 2, ., 1, ., 1, ., 1, 4 | 0.5238 | 0.9777 | 0.9790 | yes | no |
| Q7NS23 | METE_CHRVO | 2, ., 1, ., 1, ., 1, 4 | 0.5111 | 0.9856 | 0.9921 | yes | no |
| Q1BQX8 | METE_BURCA | 2, ., 1, ., 1, ., 1, 4 | 0.5238 | 0.9777 | 0.9790 | yes | no |
| Q3SGL1 | METE_THIDA | 2, ., 1, ., 1, ., 1, 4 | 0.5077 | 0.9712 | 0.9624 | yes | no |
| O50008 | METE_ARATH | 2, ., 1, ., 1, ., 1, 4 | 0.8692 | 1.0 | 1.0 | yes | no |
| Q9PB72 | METE_XYLFA | 2, ., 1, ., 1, ., 1, 4 | 0.525 | 0.9764 | 0.9854 | yes | no |
| Q9JZQ2 | METE_NEIMB | 2, ., 1, ., 1, ., 1, 4 | 0.5124 | 0.9764 | 0.9854 | yes | no |
| A5FJR8 | METE_FLAJ1 | 2, ., 1, ., 1, ., 1, 4 | 0.5214 | 0.9830 | 0.9715 | yes | no |
| Q39AN3 | METE_BURS3 | 2, ., 1, ., 1, ., 1, 4 | 0.5264 | 0.9777 | 0.9790 | yes | no |
| Q0B6M7 | METE_BURCM | 2, ., 1, ., 1, ., 1, 4 | 0.5238 | 0.9777 | 0.9790 | yes | no |
| A1TYT7 | METE_MARAV | 2, ., 1, ., 1, ., 1, 4 | 0.5058 | 0.9712 | 0.9828 | yes | no |
| A0B2Z3 | METE_BURCH | 2, ., 1, ., 1, ., 1, 4 | 0.5238 | 0.9777 | 0.9790 | yes | no |
| Q9AMV8 | METE_BRAJA | 2, ., 1, ., 1, ., 1, 4 | 0.5032 | 0.9764 | 0.9564 | yes | no |
| Q42699 | METE_CATRO | 2, ., 1, ., 1, ., 1, 4 | 0.8797 | 1.0 | 1.0 | N/A | no |
| Q13MI3 | METE_BURXL | 2, ., 1, ., 1, ., 1, 4 | 0.5139 | 0.9660 | 0.9672 | yes | no |
| Q87BY8 | METE_XYLFT | 2, ., 1, ., 1, ., 1, 4 | 0.5302 | 0.9764 | 0.9854 | yes | no |
| Q93J59 | METE_STRCO | 2, ., 1, ., 1, ., 1, 4 | 0.5052 | 0.9869 | 0.9779 | yes | no |
| A4J5C3 | METE_DESRM | 2, ., 1, ., 1, ., 1, 4 | 0.4915 | 0.9777 | 0.9790 | yes | no |
| Q2KYF3 | METE_BORA1 | 2, ., 1, ., 1, ., 1, 4 | 0.5071 | 0.9777 | 0.9765 | yes | no |
| Q9JUT6 | METE_NEIMA | 2, ., 1, ., 1, ., 1, 4 | 0.5150 | 0.9764 | 0.9854 | yes | no |
| B3QGC4 | METE_RHOPT | 2, ., 1, ., 1, ., 1, 4 | 0.5256 | 0.9830 | 0.9543 | yes | no |
| A7HQP6 | METE_PARL1 | 2, ., 1, ., 1, ., 1, 4 | 0.5117 | 0.9843 | 0.9868 | yes | no |
| Q2SMS4 | METE_HAHCH | 2, ., 1, ., 1, ., 1, 4 | 0.5103 | 0.9803 | 0.9855 | yes | no |
| Q42662 | METE_SOLSC | 2, ., 1, ., 1, ., 1, 4 | 0.8679 | 0.9986 | 1.0 | N/A | no |
| P93263 | METE_MESCR | 2, ., 1, ., 1, ., 1, 4 | 0.8758 | 1.0 | 1.0 | N/A | no |
| Q2S338 | METE_SALRD | 2, ., 1, ., 1, ., 1, 4 | 0.5156 | 0.9764 | 0.9713 | yes | no |
| Q21N29 | METE_SACD2 | 2, ., 1, ., 1, ., 1, 4 | 0.5071 | 0.9790 | 0.9790 | yes | no |
| A1KHS4 | METE_MYCBP | 2, ., 1, ., 1, ., 1, 4 | 0.5066 | 0.9699 | 0.9776 | yes | no |
| Q1QZS5 | METE_CHRSD | 2, ., 1, ., 1, ., 1, 4 | 0.5176 | 0.9764 | 0.9816 | yes | no |
| Q98A73 | METE_RHILO | 2, ., 1, ., 1, ., 1, 4 | 0.4980 | 0.9843 | 0.9703 | yes | no |
| A4JJS1 | METE_BURVG | 2, ., 1, ., 1, ., 1, 4 | 0.5058 | 0.9751 | 0.9726 | yes | no |
| B1Z0R8 | METE_BURA4 | 2, ., 1, ., 1, ., 1, 4 | 0.5251 | 0.9777 | 0.9790 | yes | no |
| Q11PV4 | METE_CYTH3 | 2, ., 1, ., 1, ., 1, 4 | 0.4980 | 0.9895 | 0.9767 | yes | no |
| Q0K0V6 | METE_CUPNH | 2, ., 1, ., 1, ., 1, 4 | 0.5104 | 0.9816 | 0.9482 | yes | no |
| Q11EU7 | METE_MESSB | 2, ., 1, ., 1, ., 1, 4 | 0.5045 | 0.9712 | 0.9661 | yes | no |
| B1K5S8 | METE_BURCC | 2, ., 1, ., 1, ., 1, 4 | 0.5225 | 0.9777 | 0.9790 | yes | no |
| A5U1I0 | METE_MYCTA | 2, ., 1, ., 1, ., 1, 4 | 0.5066 | 0.9699 | 0.9776 | yes | no |
| Q3JAD5 | METE_NITOC | 2, ., 1, ., 1, ., 1, 4 | 0.5176 | 0.9803 | 0.9894 | yes | no |
| B1VV57 | METE_STRGG | 2, ., 1, ., 1, ., 1, 4 | 0.5150 | 0.9803 | 0.9689 | yes | no |
| A1KTL3 | METE_NEIMF | 2, ., 1, ., 1, ., 1, 4 | 0.5150 | 0.9764 | 0.9854 | yes | no |
| Q8XS05 | METE_RALSO | 2, ., 1, ., 1, ., 1, 4 | 0.5117 | 0.9790 | 0.9652 | yes | no |
| Q3SNK1 | METE_NITWN | 2, ., 1, ., 1, ., 1, 4 | 0.5051 | 0.9764 | 0.9688 | yes | no |
| Q9AAW1 | METE_CAUCR | 2, ., 1, ., 1, ., 1, 4 | 0.5155 | 0.9764 | 0.9613 | yes | no |
| B0U3F5 | METE_XYLFM | 2, ., 1, ., 1, ., 1, 4 | 0.5289 | 0.9764 | 0.9854 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.14 | 0.994 |
| 3rd Layer | 2.1.1 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 | GSVIVG00003836001 | SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (765 aa) | |||||||||
(Vitis vinifera) | |||||||||||
 | GSVIVG00000669001 | • | • | • | • | 0.978 | |||||
 | GSVIVG00021002001 | • | • | • | • | 0.959 | |||||
 | METK2 | • | • | • | • | 0.950 | |||||
 | METK5 | • | • | • | • | 0.950 | |||||
 | METK3 | • | • | • | • | 0.950 | |||||
 | METK4 | • | • | • | • | 0.950 | |||||
 | METK1 | • | • | • | • | 0.950 | |||||
 | GSVIVG00015916001 | • | • | • | 0.941 | ||||||
 | GSVIVG00031656001 | • | • | • | 0.941 | ||||||
 | GSVIVG00000520001 | • | • | • | 0.936 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 765 | |||
| PLN02475 | 766 | PLN02475, PLN02475, 5-methyltetrahydropteroyltrigl | 0.0 | |
| PRK05222 | 758 | PRK05222, PRK05222, 5-methyltetrahydropteroyltrigl | 0.0 | |
| TIGR01371 | 750 | TIGR01371, met_syn_B12ind, 5-methyltetrahydroptero | 0.0 | |
| cd03312 | 360 | cd03312, CIMS_N_terminal_like, CIMS - Cobalamine-i | 0.0 | |
| pfam01717 | 324 | pfam01717, Meth_synt_2, Cobalamin-independent synt | 0.0 | |
| COG0620 | 330 | COG0620, MetE, Methionine synthase II (cobalamin-i | 1e-156 | |
| pfam08267 | 310 | pfam08267, Meth_synt_1, Cobalamin-independent synt | 1e-152 | |
| cd03311 | 332 | cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-i | 1e-142 | |
| PRK04326 | 330 | PRK04326, PRK04326, methionine synthase; Provision | 4e-74 | |
| cd03310 | 321 | cd03310, CIMS_like, CIMS - Cobalamine-independent | 1e-34 | |
| PRK00957 | 305 | PRK00957, PRK00957, methionine synthase; Provision | 1e-29 | |
| cd00465 | 306 | cd00465, URO-D_CIMS_like, The URO-D_CIMS_like prot | 4e-27 | |
| PRK01207 | 343 | PRK01207, PRK01207, methionine synthase; Provision | 2e-22 | |
| PRK09121 | 339 | PRK09121, PRK09121, 5-methyltetrahydropteroyltrigl | 4e-18 | |
| cd03310 | 321 | cd03310, CIMS_like, CIMS - Cobalamine-independent | 2e-09 | |
| PRK08575 | 326 | PRK08575, PRK08575, 5-methyltetrahydropteroyltrigl | 8e-08 | |
| COG0620 | 330 | COG0620, MetE, Methionine synthase II (cobalamin-i | 2e-05 | |
| PRK08575 | 326 | PRK08575, PRK08575, 5-methyltetrahydropteroyltrigl | 2e-04 | |
| cd03311 | 332 | cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-i | 0.001 | |
| cd00465 | 306 | cd00465, URO-D_CIMS_like, The URO-D_CIMS_like prot | 0.002 |
| >gnl|CDD|215264 PLN02475, PLN02475, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | Back alignment and domain information |
|---|
Score = 1588 bits (4114), Expect = 0.0
Identities = 691/766 (90%), Positives = 727/766 (94%), Gaps = 1/766 (0%)
Query: 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSN 60
MASH+VGYPRMGPKRELKFALESFWDGKSSA++LQ VAADLR+SIW QM+ AGIK+IPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSAAGIKYIPSN 60
Query: 61 TFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
TFSYYDQVLDTTAMLGAVPPRY W GGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI
Sbjct: 61 TFSYYDQVLDTTAMLGAVPPRYGWTGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
Query: 121 VPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSL 180
VPELGP+V FSYASHKAV EYKEAKALG++TVPVLVGPVSYLLLSKPAKGV+KSF LLSL
Sbjct: 121 VPELGPEVKFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVDKSFDLLSL 180
Query: 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240
+DKI+PVYKEV+AELKAAGA+WIQFDEP LV+DL+SHKLQAF AY+EL+S+LSGLNVL+
Sbjct: 181 LDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAYAELESTLSGLNVLV 240
Query: 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKT-EFPLGKYLFAGVVDGRNIW 299
ETYFADVPAE YK LTSLKGVT FGFDL+RGTKTLDLIK FP GKYLFAGVVDGRNIW
Sbjct: 241 ETYFADVPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLIKKAGFPSGKYLFAGVVDGRNIW 300
Query: 300 ANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVV 359
ANDLA+SL TLQ L G VGKDK+VVSTSCSLLHTAVDL NETKLD+E+KSWLAFAAQKVV
Sbjct: 301 ANDLAASLATLQALEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDKELKSWLAFAAQKVV 360
Query: 360 EVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSAR 419
EV ALAKAL+GQKDEA+FS+NAAAQASR+SSPRVTNEAVQK AAALKGSDHRRAT VSAR
Sbjct: 361 EVVALAKALAGQKDEAFFSANAAAQASRRSSPRVTNEAVQKAAAALKGSDHRRATPVSAR 420
Query: 420 LDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQE 479
LDAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKKISE+DYVK IKEEI VVKLQE
Sbjct: 421 LDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKISEEDYVKAIKEEIAKVVKLQE 480
Query: 480 ELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMT 539
ELDIDVLVHGEPERNDMVEYFGEQLSGFAFT NGWVQSYGSRCVKPPIIYGDVSRPKAMT
Sbjct: 481 ELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMT 540
Query: 540 VFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGI 599
VFWSS+AQSMTKRPMKGMLTGPVTILNWSFVRNDQPR ETCYQIALAIKDEVEDLEKAGI
Sbjct: 541 VFWSSVAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGI 600
Query: 600 TVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHS 659
TVIQIDEAALREGLPLRKSE FYL WAVHSFRITNCGVQDTTQ+HTHMCYSNFNDIIHS
Sbjct: 601 TVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHS 660
Query: 660 IMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKML 719
I+DMDADVITIENSRSDEKLLSVFREGVKY AGIGPGVYDIHSPRIPSTEEIADRINKML
Sbjct: 661 IIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKML 720
Query: 720 AVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLASAK 765
AVLESNILWVNPDCGLKTRKY EVKPAL NMVAAAKLLR QLASAK
Sbjct: 721 AVLESNILWVNPDCGLKTRKYPEVKPALKNMVAAAKLLRAQLASAK 766
|
Length = 766 |
| >gnl|CDD|235367 PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233381 TIGR01371, met_syn_B12ind, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|239428 cd03312, CIMS_N_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like | Back alignment and domain information |
|---|
| >gnl|CDD|216660 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|223693 COG0620, MetE, Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|219768 pfam08267, Meth_synt_1, Cobalamin-independent synthase, N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|239427 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like | Back alignment and domain information |
|---|
| >gnl|CDD|179825 PRK04326, PRK04326, methionine synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|239426 cd03310, CIMS_like, CIMS - Cobalamine-independent methonine synthase, or MetE | Back alignment and domain information |
|---|
| >gnl|CDD|234875 PRK00957, PRK00957, methionine synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238261 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases | Back alignment and domain information |
|---|
| >gnl|CDD|100814 PRK01207, PRK01207, methionine synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|181659 PRK09121, PRK09121, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|239426 cd03310, CIMS_like, CIMS - Cobalamine-independent methonine synthase, or MetE | Back alignment and domain information |
|---|
| >gnl|CDD|236299 PRK08575, PRK08575, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223693 COG0620, MetE, Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|236299 PRK08575, PRK08575, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|239427 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like | Back alignment and domain information |
|---|
| >gnl|CDD|238261 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 765 | |||
| KOG2263 | 765 | consensus Methionine synthase II (cobalamin-indepe | 100.0 | |
| PLN02475 | 766 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PRK05222 | 758 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| TIGR01371 | 750 | met_syn_B12ind 5-methyltetrahydropteroyltriglutama | 100.0 | |
| cd03312 | 360 | CIMS_N_terminal_like CIMS - Cobalamine-independent | 100.0 | |
| PF08267 | 310 | Meth_synt_1: Cobalamin-independent synthase, N-ter | 100.0 | |
| COG0620 | 330 | MetE Methionine synthase II (cobalamin-independent | 100.0 | |
| PRK01207 | 343 | methionine synthase; Provisional | 100.0 | |
| PRK09121 | 339 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PRK08575 | 326 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PF01717 | 324 | Meth_synt_2: Cobalamin-independent synthase, Catal | 100.0 | |
| PRK08575 | 326 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PRK06520 | 368 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PRK06233 | 372 | hypothetical protein; Provisional | 100.0 | |
| PRK04326 | 330 | methionine synthase; Provisional | 100.0 | |
| cd03311 | 332 | CIMS_C_terminal_like CIMS - Cobalamine-independent | 100.0 | |
| cd03312 | 360 | CIMS_N_terminal_like CIMS - Cobalamine-independent | 100.0 | |
| TIGR01371 | 750 | met_syn_B12ind 5-methyltetrahydropteroyltriglutama | 100.0 | |
| PRK05222 | 758 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PLN02475 | 766 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PRK00957 | 305 | methionine synthase; Provisional | 100.0 | |
| PRK04326 | 330 | methionine synthase; Provisional | 100.0 | |
| PRK09121 | 339 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| cd03310 | 321 | CIMS_like CIMS - Cobalamine-independent methonine | 100.0 | |
| PRK06052 | 344 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PRK06520 | 368 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PRK06233 | 372 | hypothetical protein; Provisional | 100.0 | |
| COG0620 | 330 | MetE Methionine synthase II (cobalamin-independent | 100.0 | |
| cd03310 | 321 | CIMS_like CIMS - Cobalamine-independent methonine | 100.0 | |
| cd03311 | 332 | CIMS_C_terminal_like CIMS - Cobalamine-independent | 100.0 | |
| PRK01207 | 343 | methionine synthase; Provisional | 100.0 | |
| PF08267 | 310 | Meth_synt_1: Cobalamin-independent synthase, N-ter | 100.0 | |
| PF01717 | 324 | Meth_synt_2: Cobalamin-independent synthase, Catal | 100.0 | |
| PRK00957 | 305 | methionine synthase; Provisional | 100.0 | |
| PRK06438 | 292 | hypothetical protein; Provisional | 100.0 | |
| PRK06438 | 292 | hypothetical protein; Provisional | 100.0 | |
| PRK06052 | 344 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| KOG2263 | 765 | consensus Methionine synthase II (cobalamin-indepe | 100.0 | |
| cd00465 | 306 | URO-D_CIMS_like The URO-D_CIMS_like protein superf | 99.94 | |
| cd00465 | 306 | URO-D_CIMS_like The URO-D_CIMS_like protein superf | 99.78 | |
| cd03465 | 330 | URO-D_like The URO-D _like protein superfamily inc | 99.72 | |
| TIGR01463 | 340 | mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi | 99.66 | |
| PRK06252 | 339 | methylcobalamin:coenzyme M methyltransferase; Vali | 99.66 | |
| cd03307 | 326 | Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al | 99.51 | |
| PRK00115 | 346 | hemE uroporphyrinogen decarboxylase; Validated | 99.45 | |
| PLN02433 | 345 | uroporphyrinogen decarboxylase | 99.4 | |
| cd00717 | 335 | URO-D Uroporphyrinogen decarboxylase (URO-D) is a | 99.39 | |
| TIGR01464 | 338 | hemE uroporphyrinogen decarboxylase. This model re | 99.39 | |
| PF01208 | 343 | URO-D: Uroporphyrinogen decarboxylase (URO-D); Int | 99.36 | |
| cd03308 | 378 | CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro | 99.12 | |
| cd03309 | 321 | CmuC_like CmuC_like. Proteins similar to the putat | 99.04 | |
| COG0407 | 352 | HemE Uroporphyrinogen-III decarboxylase [Coenzyme | 98.98 | |
| cd03465 | 330 | URO-D_like The URO-D _like protein superfamily inc | 98.94 | |
| TIGR01463 | 340 | mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi | 98.63 | |
| PRK06252 | 339 | methylcobalamin:coenzyme M methyltransferase; Vali | 98.6 | |
| cd03307 | 326 | Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al | 98.21 | |
| PF01208 | 343 | URO-D: Uroporphyrinogen decarboxylase (URO-D); Int | 98.13 | |
| PLN02433 | 345 | uroporphyrinogen decarboxylase | 98.07 | |
| TIGR01464 | 338 | hemE uroporphyrinogen decarboxylase. This model re | 97.89 | |
| PRK00115 | 346 | hemE uroporphyrinogen decarboxylase; Validated | 97.79 | |
| cd00717 | 335 | URO-D Uroporphyrinogen decarboxylase (URO-D) is a | 97.59 | |
| cd03309 | 321 | CmuC_like CmuC_like. Proteins similar to the putat | 97.5 | |
| KOG2872 | 359 | consensus Uroporphyrinogen decarboxylase [Coenzyme | 97.43 | |
| cd03308 | 378 | CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro | 96.22 | |
| COG0407 | 352 | HemE Uroporphyrinogen-III decarboxylase [Coenzyme | 96.18 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 91.1 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 90.09 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 89.97 | |
| PRK08005 | 210 | epimerase; Validated | 89.23 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 88.62 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 87.87 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 86.83 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 86.68 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 84.65 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 83.59 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 82.94 | |
| PRK14057 | 254 | epimerase; Provisional | 82.29 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 82.29 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 80.9 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 80.62 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 80.57 |
| >KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-212 Score=1660.46 Aligned_cols=763 Identities=86% Similarity=1.291 Sum_probs=742.2
Q ss_pred CceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 004263 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (765)
Q Consensus 1 ~~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~ 80 (765)
|.+|++||||||++||||+|+|+||.|++|.++|.++++++|.++|+.|+++|+|+||+|+||+||+|||++.|||+||+
T Consensus 2 ~~S~i~G~PRiGp~RELK~A~E~~W~GKts~ddL~~va~~LR~~~WK~~k~aGv~~IPSN~FS~YDQvlD~t~~~~~vP~ 81 (765)
T KOG2263|consen 2 MASHIVGYPRIGPKRELKFALESFWDGKTSADDLQKVAADLRSSIWKLMKAAGVKIIPSNTFSHYDQVLDTTAMLGAVPP 81 (765)
T ss_pred cccccccCCCcCccHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchhHHHHHHhHHHHhcCCCc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCCCCceEeehHHH
Q 004263 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (765)
Q Consensus 81 rf~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T 160 (765)
||++..+.+++|+||+|+||..+++|+||+||||+||||++||+...+.|++.+++.++||++||++|+.++|||+||+|
T Consensus 82 RYg~~sg~~~lD~yFsM~RG~~~v~A~EM~KWFDsNyHyi~Pe~~~e~~F~~~s~KavdEf~EAK~lGi~T~PVLvGPvs 161 (765)
T KOG2263|consen 82 RYGRTSGEIGLDVYFSMARGNASVPAMEMTKWFDSNYHYIVPELGPEVNFSYASHKAVDEFKEAKALGIDTVPVLVGPVS 161 (765)
T ss_pred ccccccCccchhhhhhhhcCCCCcchHHHhhhhccCceeeccccCCccceeeccchhHHHHHHHHhcCCcccceeecchh
Confidence 99877778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEE
Q 004263 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (765)
Q Consensus 161 ~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (765)
||+|+|..++-..++++.+|+++|+|+|.++|.+|.++|++|||||||+|++|++.+-+++|..+|..+......++++|
T Consensus 162 YL~l~K~aKg~~ks~~~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~l~a~k~AY~~l~~~~~~~~v~l 241 (765)
T KOG2263|consen 162 YLLLSKAAKGVDKSFELLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEKLQAFKGAYAELESTLSGLNVLL 241 (765)
T ss_pred hhheeccccCcccccchHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHHHHHHHHHHHHHHhhccccceee
Confidence 99999876553225789999999999999999999999999999999999999999999999999999976554579999
Q ss_pred EeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCC
Q 004263 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKD 320 (765)
Q Consensus 241 ~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~ 320 (765)
+||||+++.+.++.|..||.|.++|+|+++++++++.++..||.+|.|++|||||||||.+|+......|+++...+|.+
T Consensus 242 ~TYF~~v~~~a~~~lk~L~~v~~~~~D~VR~~e~lD~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~d 321 (765)
T KOG2263|consen 242 ATYFADVPAEAYKTLKSLKGVTAFGFDLVRGPETLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGKD 321 (765)
T ss_pred hhhhccCCHHHHHHHhCCcceeeeeeeeeechhhHHHHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhccc
Confidence 99999996666999999998999999999999999999888999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhcCCCCCCHHHHh
Q 004263 321 KVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQK 400 (765)
Q Consensus 321 ~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 400 (765)
+|.|++||||+|+|+|+.+|++||+|||+|||||.|||.|++.|++++++..+.+.+.+|..+.++|+.|++++|++||+
T Consensus 322 kvvVstS~SlLHt~vdL~nE~kld~EiK~w~aFA~qK~~Ev~~l~Ka~sg~~~~a~~eaNa~~~~sR~~Sp~v~~~aV~~ 401 (765)
T KOG2263|consen 322 KVVVSTSCSLLHTAVDLINETKLDAEIKSWLAFAAQKVVEVNALAKALSGQKVEALFEANAAALASRRSSPRVTNEAVQK 401 (765)
T ss_pred eEEEeechhhhccchhhccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhcchHHHhhccCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777888999999999999999999999999
Q ss_pred HHhhCcCCCCcCCCChHHHHHHHHhhcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004263 401 PAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEE 480 (765)
Q Consensus 401 ~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~~~~i~~~v~~Q~~ 480 (765)
|++++++.|.+|.+||+.|..+||++||||.||||||||||||.+||..|..|.+|+||+++|.++|+++|+.+|+.||+
T Consensus 402 r~a~v~~~~h~R~t~~~~Rl~~QQk~lnLPl~PTTTIGSFPQTkelR~~R~~f~~~~IS~edY~k~I~~Ei~kVvkfQEe 481 (765)
T KOG2263|consen 402 RVAAVKGSDHRRATPVSARLDAQQKKLNLPLLPTTTIGSFPQTKELRRVRREFKAKKISEEDYVKFIKEEIEKVVKFQEE 481 (765)
T ss_pred HHHhcCcccccccCchhhhhHHHHhhcCCCccccccccCCcchHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHHhccCCCceEeeec
Q 004263 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTG 560 (765)
Q Consensus 481 ~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~~~t~~~vK~~ltG 560 (765)
+||||++|||.+|||||+||+|+|+||.||.||||||||+|||+||+|+||++||+|||+.|..|||+.|.+||||||||
T Consensus 482 lgiDVLVHGEpERNDMVeyFGEql~GfaFTvNGWVQSYGSRcVkPPiI~GDvsRPk~MtV~~S~~AQs~TsrPmKGMLTg 561 (765)
T KOG2263|consen 482 LGIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSYAQSMTSRPMKGMLTG 561 (765)
T ss_pred hCccEEecCCcccccHHHHHHhhccceEEEecchhHhhcCcccCCCeeeccccCCCcceeeHHHHHHHHhcCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCCCCHHHHHHHHHHHHHHHHccCCC
Q 004263 561 PVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD 640 (765)
Q Consensus 561 PvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~~~~~~~l~~~v~a~~~~~~~v~~ 640 (765)
|+|++.|||+|+|.++.+.|.|||.++++|+.+|+++|+.+||+|||+||++||+|+.++..|++|++++||.+++++.+
T Consensus 562 PvTiL~WSF~R~D~~~~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR~aE~~~Yl~WAv~aFRi~~sgVqd 641 (765)
T KOG2263|consen 562 PVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLRKAEHSFYLDWAVHAFRITNSGVQD 641 (765)
T ss_pred ceEEEEeccccCCcchhHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcCCCcchhhHHHHHHHHHHHhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccCChhHHHHHHHcCCccEEEEecCCCChhhHHHhhhcccCCceeccccccCCCCCCCCHHHHHHHHHHHHh
Q 004263 641 TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLA 720 (765)
Q Consensus 641 ~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~ve~~eev~~~i~~a~~ 720 (765)
++|||+||||+||++|+..|.+|++|+|+||.+|+++++|..|.++..|+..||+||+|+|||++|+.+|+++||.+.++
T Consensus 642 ~TQIHtH~CYSdfndi~~~I~~mDADVitIEnSrsD~kllsvf~~gvkY~~~IGpG~~DIHSPRiPs~dE~~erI~~~l~ 721 (765)
T KOG2263|consen 642 STQIHTHMCYSDFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIAERINKMLA 721 (765)
T ss_pred cchhhhhhhhhhccHHHHHHHhccCcEEEEecCcchHHHHHHHhccCcccCCcCCceecccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998766789999999999999999999999999999999
Q ss_pred hcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 004263 721 VLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLAS 763 (765)
Q Consensus 721 ~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~~~ 763 (765)
.+|.+.+||||||||+||.|+|+..+|+|||+||+.+|++|+.
T Consensus 722 ~~~~~~lWvNPDCGLKTR~~~E~~~~L~~Mv~AAk~~R~Q~~~ 764 (765)
T KOG2263|consen 722 VLPQNILWVNPDCGLKTRGYTEVKPALKNMVAAAKLIRSQLAS 764 (765)
T ss_pred hcccccEEECCCcCcccCCCccccHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999875
|
|
| >PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | Back alignment and domain information |
|---|
| >PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional | Back alignment and domain information |
|---|
| >TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | Back alignment and domain information |
|---|
| >cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like | Back alignment and domain information |
|---|
| >PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine [] | Back alignment and domain information |
|---|
| >COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK01207 methionine synthase; Provisional | Back alignment and domain information |
|---|
| >PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2 | Back alignment and domain information |
|---|
| >PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK06233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK04326 methionine synthase; Provisional | Back alignment and domain information |
|---|
| >cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like | Back alignment and domain information |
|---|
| >cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like | Back alignment and domain information |
|---|
| >TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | Back alignment and domain information |
|---|
| >PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | Back alignment and domain information |
|---|
| >PRK00957 methionine synthase; Provisional | Back alignment and domain information |
|---|
| >PRK04326 methionine synthase; Provisional | Back alignment and domain information |
|---|
| >PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE | Back alignment and domain information |
|---|
| >PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK06233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE | Back alignment and domain information |
|---|
| >cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like | Back alignment and domain information |
|---|
| >PRK01207 methionine synthase; Provisional | Back alignment and domain information |
|---|
| >PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine [] | Back alignment and domain information |
|---|
| >PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2 | Back alignment and domain information |
|---|
| >PRK00957 methionine synthase; Provisional | Back alignment and domain information |
|---|
| >PRK06438 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06438 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases | Back alignment and domain information |
|---|
| >cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases | Back alignment and domain information |
|---|
| >cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases | Back alignment and domain information |
|---|
| >TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family | Back alignment and domain information |
|---|
| >PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated | Back alignment and domain information |
|---|
| >cd03307 Mta_CmuA_like MtaA_CmuA_like family | Back alignment and domain information |
|---|
| >PRK00115 hemE uroporphyrinogen decarboxylase; Validated | Back alignment and domain information |
|---|
| >PLN02433 uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
| >cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors | Back alignment and domain information |
|---|
| >TIGR01464 hemE uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
| >PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] | Back alignment and domain information |
|---|
| >cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC | Back alignment and domain information |
|---|
| >cd03309 CmuC_like CmuC_like | Back alignment and domain information |
|---|
| >COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases | Back alignment and domain information |
|---|
| >TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family | Back alignment and domain information |
|---|
| >PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated | Back alignment and domain information |
|---|
| >cd03307 Mta_CmuA_like MtaA_CmuA_like family | Back alignment and domain information |
|---|
| >PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] | Back alignment and domain information |
|---|
| >PLN02433 uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
| >TIGR01464 hemE uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
| >PRK00115 hemE uroporphyrinogen decarboxylase; Validated | Back alignment and domain information |
|---|
| >cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors | Back alignment and domain information |
|---|
| >cd03309 CmuC_like CmuC_like | Back alignment and domain information |
|---|
| >KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC | Back alignment and domain information |
|---|
| >COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 765 | ||||
| 1u1h_A | 765 | A. Thaliana Cobalamine Independent Methionine Synth | 0.0 | ||
| 3ppc_A | 789 | Crystal Structure Of The Candida Albicans Methionin | 0.0 | ||
| 3pph_A | 789 | Crystal Structure Of The Candida Albicans Methionin | 0.0 | ||
| 3ppf_A | 789 | Crystal Structure Of The Candida Albicans Methionin | 0.0 | ||
| 2nq5_A | 755 | Crystal Structure Of Methyltransferase From Strepto | 1e-180 | ||
| 3l7r_A | 779 | Crystal Structure Of Mete From Streptococcus Mutans | 1e-180 | ||
| 1xr2_A | 766 | Crystal Structure Of Oxidized T. Maritima Cobalamin | 1e-166 | ||
| 1t7l_A | 766 | Crystal Structure Of Cobalamin-Independent Methioni | 1e-166 | ||
| 1xpg_A | 765 | Crystal Structure Of T. Maritima Cobalamin-Independ | 1e-155 | ||
| 1xdj_A | 766 | Crystal Structure Of T. Maritima Cobalamin-Independ | 1e-155 | ||
| 3rpd_A | 357 | The Structure Of A B12-Independent Methionine Synth | 2e-21 |
| >pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase Length = 765 | Back alignment and structure |
|
| >pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Tyrosine Variant With Zinc Length = 789 | Back alignment and structure |
| >pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Threonine Variant Length = 789 | Back alignment and structure |
| >pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Alanine Variant Without Zinc Length = 789 | Back alignment and structure |
| >pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus Mutans Length = 755 | Back alignment and structure |
| >pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans Length = 779 | Back alignment and structure |
| >pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin- Independent Methionine Synthase Complexed With Methyltetrahydrofolate Length = 766 | Back alignment and structure |
| >pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine Synthase From T. Maritima Length = 766 | Back alignment and structure |
| >pdb|1XPG|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Methyltetrahydrofolate Length = 765 | Back alignment and structure |
| >pdb|1XDJ|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Homocysteine Length = 766 | Back alignment and structure |
| >pdb|3RPD|A Chain A, The Structure Of A B12-Independent Methionine Synthase From Shewanella Sp. W3-18-1 In Complex With Selenomethionine. Length = 357 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Length = 765 | Back alignment and structure |
|---|
Score = 1146 bits (2965), Expect = 0.0
Identities = 664/765 (86%), Positives = 715/765 (93%)
Query: 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSN 60
MASH+VGYPRMGPKRELKFALESFWDGKS+A++LQ V+ADLR+SIW QM+ AG KFIPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSN 60
Query: 61 TFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
TF++YDQVLDTTAMLGAVPPRY + GGEIG DVYFSMARGNASVPAMEMTKWFDTNYHYI
Sbjct: 61 TFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
Query: 121 VPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSL 180
VPELGP+VNFSYASHKAV EYKEAKALG++TVPVLVGPVSYLLLSK AKGV+KSF LLSL
Sbjct: 121 VPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSL 180
Query: 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240
+ KI+P+YKEV+ ELKAAGATWIQ DEP LV+DL+ KLQAF+ AY+EL+S+LSGLNVL+
Sbjct: 181 LPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLV 240
Query: 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWA 300
ETYFAD+PAE YK LTSLKGVT FGFDL+RGTKTLDL+K FP GKYLFAGVVDGRNIWA
Sbjct: 241 ETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWA 300
Query: 301 NDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVE 360
ND A+SL+TLQ L G VGKDK+VVSTSCSLLHTAVDL NETKLD EIKSW+AFAAQKVVE
Sbjct: 301 NDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVE 360
Query: 361 VNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARL 420
VNALAKAL+GQKDEA FS+NAAA ASR+SSPRVTNE VQK AAALKGSDHRRATNVSARL
Sbjct: 361 VNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARL 420
Query: 421 DAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEE 480
DAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKK+SE+DYVK IKEEI VV LQEE
Sbjct: 421 DAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEE 480
Query: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTV 540
LDIDVLVHGEPERNDMVEYFGEQLSGFAFT NGWVQSYGSRCVKPP+IYGDVSRPKAMTV
Sbjct: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTV 540
Query: 541 FWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGIT 600
FWS+MAQSMT RPMKGMLTGPVTILNWSFVRNDQPR ETCYQIALAIKDEVEDLEK GI
Sbjct: 541 FWSAMAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIG 600
Query: 601 VIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSI 660
VIQIDEAALREGLPLRKSE FYL WAVHSFRITNCGVQD+TQ+HTHMCYS+FNDIIHSI
Sbjct: 601 VIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSI 660
Query: 661 MDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLA 720
+DMDADVITIENSRSDEKLLSVFREGVKY AGIGPGVYDIHSPRIPS+EEIADR+NKMLA
Sbjct: 661 IDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLA 720
Query: 721 VLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLASAK 765
VLE NILWVNPDCGLKTRKY+EVKPAL NMV AAKL+R+QLASAK
Sbjct: 721 VLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765
|
| >1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Length = 766 | Back alignment and structure |
|---|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Length = 789 | Back alignment and structure |
|---|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Length = 789 | Back alignment and structure |
|---|
| >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Length = 755 | Back alignment and structure |
|---|
| >3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Length = 357 | Back alignment and structure |
|---|
| >3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Length = 357 | Back alignment and structure |
|---|
| >1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Length = 375 | Back alignment and structure |
|---|
| >1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Length = 375 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 765 | |||
| 3ppg_A | 789 | 5-methyltetrahydropteroyltriglutamate--homocystei | 100.0 | |
| 1t7l_A | 766 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 1u1j_A | 765 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 2nq5_A | 755 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 3rpd_A | 357 | Methionine synthase (B12-independent); structural | 100.0 | |
| 1ypx_A | 375 | Putative vitamin-B12 independent methionine synth | 100.0 | |
| 1t7l_A | 766 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 3rpd_A | 357 | Methionine synthase (B12-independent); structural | 100.0 | |
| 1u1j_A | 765 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 1ypx_A | 375 | Putative vitamin-B12 independent methionine synth | 100.0 | |
| 2nq5_A | 755 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 3ppg_A | 789 | 5-methyltetrahydropteroyltriglutamate--homocystei | 100.0 | |
| 2inf_A | 359 | URO-D, UPD, uroporphyrinogen decarboxylase; (alpha | 99.65 | |
| 1j93_A | 353 | UROD, uroporphyrinogen decarboxylase; beta barrel, | 99.59 | |
| 3cyv_A | 354 | URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ | 99.47 | |
| 1r3s_A | 367 | URO-D, uroporphyrinogen decarboxylase, UPD; uropor | 99.44 | |
| 2eja_A | 338 | URO-D, UPD, uroporphyrinogen decarboxylase; dimer, | 99.39 | |
| 4ay7_A | 348 | Methylcobalamin\: coenzyme M methyltransferase; TI | 99.34 | |
| 4exq_A | 368 | UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid | 99.27 | |
| 1j93_A | 353 | UROD, uroporphyrinogen decarboxylase; beta barrel, | 99.01 | |
| 2inf_A | 359 | URO-D, UPD, uroporphyrinogen decarboxylase; (alpha | 99.0 | |
| 3cyv_A | 354 | URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ | 98.34 | |
| 2eja_A | 338 | URO-D, UPD, uroporphyrinogen decarboxylase; dimer, | 98.29 | |
| 1r3s_A | 367 | URO-D, uroporphyrinogen decarboxylase, UPD; uropor | 98.01 | |
| 4exq_A | 368 | UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid | 97.41 | |
| 4ay7_A | 348 | Methylcobalamin\: coenzyme M methyltransferase; TI | 97.33 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 93.03 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 92.78 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 92.64 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 89.89 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 89.69 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 88.73 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 84.24 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 83.66 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 83.45 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 82.57 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 80.73 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 80.69 |
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-197 Score=1710.30 Aligned_cols=751 Identities=51% Similarity=0.837 Sum_probs=699.2
Q ss_pred CceecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 004263 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (765)
Q Consensus 1 ~~t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~ 80 (765)
|+||++||||||++||||+|+|+||+|++|+++|.++++++|+++|+.|+++|||+||+|||||||||||+++|||+||+
T Consensus 24 ~~~~~lg~prig~~relk~a~e~yw~g~~~~~eL~~~~~~lr~~~w~~q~~aGid~ip~~dFs~YD~vLd~~~~~g~ip~ 103 (789)
T 3ppg_A 24 VQSSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSNDFSYYDQVLDLSLLFNAIPE 103 (789)
T ss_dssp CCEECSCCCCSCTTCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSBCEESCCCSSCHHHHHHHHTTCCCG
T ss_pred HHHhhcCCCCcCCccHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEecCCCcchHHHHHHHHHhCCCch
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhhhccCCC----------CCCcccceeecccCceeecceecCCCccccC---CccchHHHHHHHHc
Q 004263 81 RYSWNGGEIGFDVYFSMARGNA----------SVPAMEMTKWFDTNYHYIVPELGPDVNFSYA---SHKAVQEYKEAKAL 147 (765)
Q Consensus 81 rf~~~~~~~~l~~yFa~arG~~----------~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~---~~~~~~e~~~a~~~ 147 (765)
||+... ..+||+||+||||.. +++|+||||||||||||+||||.++++|+++ .++++++|++|+++
T Consensus 104 r~~~~~-~~~l~~yf~~arg~~~~~~~~~~~~~~~a~eMtKWFdTNYHYiVPE~~~~~~f~l~~~~~~k~~~e~~eAk~~ 182 (789)
T 3ppg_A 104 RYTKFD-LAPIDVLFAMGRGLQAAATATQAAVDVTALEMVKWFDSNYHYVRPTFSHSTEFKLNTAAGIKPVDEFNEAKAL 182 (789)
T ss_dssp GGGSSC-CCHHHHHHHHHHCEEECC-----CEEECCCCEEECTTSSCEEECCEECTTCCCCCCGGGCCHHHHHHHHHHHT
T ss_pred hhcccC-CCcHHHHHHHhcCCccccccccccCCcccccccccccCCCCeeceEECCCCCeeeccccchhHHHHHHHHHHc
Confidence 998542 347999999999965 5779999999999999999999999999999 89999999999999
Q ss_pred CCCCceEeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHH
Q 004263 148 GMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYS 227 (765)
Q Consensus 148 g~~~K~vl~GP~T~l~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~ 227 (765)
|+.+||||+||+||++|||..++- .++++.+++++|+++|.++|++|.++||+|||||||+|++|+++++++++.++|+
T Consensus 183 G~~~kpVl~GPvT~L~L~k~~~~~-~~~~~~~lL~~Ll~~Y~~~l~~L~~~G~~wVQiDEP~Lv~dl~~~~~~~~~~aY~ 261 (789)
T 3ppg_A 183 GVQTRPVILGPVSYLYLGKADKDS-LDLEPISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDLPEAVQSKFKEAYD 261 (789)
T ss_dssp TCCCEEEEECHHHHHHTCEECGGG-TTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHTHHHHHHH
T ss_pred CCCCCceeecHHHHHHHhcccccc-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCCeeecCCCHHHHHHHHHHHH
Confidence 999999999999999999931210 0368889999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHH
Q 004263 228 ELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSL 307 (765)
Q Consensus 228 ~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~ 307 (765)
.|.+. ..++|+|+||||++ +++++.|.++| |+||||||++++++++.+.+.+|++|.|++|||||||+|++|+++++
T Consensus 262 ~L~~~-~~~kill~TYFg~~-~~~l~~l~~lp-V~gl~lDlv~~~~~l~~v~~~~~~~k~L~aGvVdGRNiWr~dl~~~l 338 (789)
T 3ppg_A 262 ALVGA-DVPELILTTYFGDV-RPNLKAIENLP-VAGFHFDFVRVPEQLDEVASILKDGQTLSAGVVDGRNIWKTDFAKAS 338 (789)
T ss_dssp HHCST-TSCEEEEECCSSCC-GGGHHHHTTCC-CSEEEEETTTCGGGHHHHHHTCCTTCEEEEEEECSSCCBCCCHHHHH
T ss_pred HHhhC-CCCCEEEECCCCCH-HHHHHHHHcCC-CcEEEEEccCCcchHHHHHhhcCCCCeEEEEEecCCccccCCHHHHH
Confidence 99763 35799999999999 89999999999 99999999998899999987899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHhh
Q 004263 308 TTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASR 387 (765)
Q Consensus 308 ~~l~~~~~~~~~~~l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~~~~~~~~~~~~~~~~~ 387 (765)
++|+++.+.+|.++|||+|||||+|||+|++.|++||+++|+|||||.|||.||++|++++++.+..+.+.+|.+++++|
T Consensus 339 ~~l~~l~~~lg~~~l~vspScSLlHvP~~l~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 418 (789)
T 3ppg_A 339 AVVQKAIEKVGKDKVVVATSSSLLHTPVDLESETKLDAVIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKAR 418 (789)
T ss_dssp HHHHHHHHHHCGGGEEEEESSCGGGSCSCGGGCSSSCHHHHTTBCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCCCcccccccCCCHHHHhhcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 99999999899899999999999999999999999999999999999999999999999997655667899999999999
Q ss_pred hcCCCCCCHHHHhHHhhCcCCCCcCCCChHHHHHHHHhhcCCCCccceecccCCCcHHHHHHHHHHhcCCCCHHHHHHHH
Q 004263 388 KSSPRVTNEAVQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTI 467 (765)
Q Consensus 388 ~~~~~~~~~~v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~~tt~iGSfPr~~elr~a~~~~~~g~i~~~~~~~~~ 467 (765)
+.|++++|++||+|+++|+++|++|.+||++|+++|+++|+||+||||||||||||++|++||++|.+|+||.++|++++
T Consensus 419 ~~~~~~~~~~v~~r~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~ptt~VGSfPRp~~L~~aR~~~~~G~is~~el~~~~ 498 (789)
T 3ppg_A 419 SESSITNDPKVQERLTTINEALATRKAAFPERLTEQKAKYNLPLFPTTTIGSFPQTKDIRINRNKFAKGQITAEEYEAFI 498 (789)
T ss_dssp HTCSSSCCHHHHHHHHTCCTGGGSCSSCHHHHHHHHHHHHCCCSSCBBCCSCCCCCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred hcccccCCHHHHHHHHhCCHhhhccCCchHHHHHHHHHhcCCCCceeccccCcCCCHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhccCCeEEeccceeeecCCceeeCcEEEccCCCCcccchhHHHHHH
Q 004263 468 KEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQ 547 (765)
Q Consensus 468 ~~~i~~~v~~Q~~~Gldvi~~GE~~r~D~v~~f~~~l~G~~~~~~g~~~~~~t~~~~~P~i~g~i~~~~p~~~~~~~~a~ 547 (765)
+++|+++|+.|+++|||+||||||+|+|||+||+++|+||.++.+||||+||++|++||+|+|+|++++||+++|++|+|
T Consensus 499 ~~aI~~vV~~Qe~~GLdvvtDGE~~R~d~v~~F~e~L~G~~~~~~g~vq~~g~r~~~~p~i~G~V~~~~p~~v~~~~~~q 578 (789)
T 3ppg_A 499 NKEIETVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFAFTTNGWVQSYGSRYVRPPIIVGDVSRPKAMTVKESVYAQ 578 (789)
T ss_dssp HHHHHHHHHHHHHHTCSBBCCCCTTCSCTTHHHHTTSEEEECCSSCCEEEETTEEECCCEEEEEEECCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeeeCCCccchhHHHHHHHhCCCeeEecCcceEecCCccccCCeeeccCCCCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCceEeeechhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEecccccccCCCCCC-CCHHHHHHH
Q 004263 548 SMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRK-SEQDFYLKW 626 (765)
Q Consensus 548 ~~t~~~vK~~ltGPvTll~~s~~~~~~~~~e~~~~la~al~~ev~~L~~aG~~~IQiDEPaL~~~l~l~~-~~~~~~l~~ 626 (765)
++|++|+|+|||||+||+.|++.+++.++++++.|||.+|++|+++|+++||++||||||++++++|++. .+++++++|
T Consensus 579 s~t~~pvK~~L~gP~ti~~~s~~r~~~~~ee~~~dlA~A~r~Ei~~L~~AG~r~IQiDEPal~e~l~~r~g~d~~~~l~~ 658 (789)
T 3ppg_A 579 SITSKPMKGMLTGPVTILRWSFPRDDVSGKIQALQLGLALRDEVNDLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNW 658 (789)
T ss_dssp HTCSSCBEEEEECHHHHHHTSBCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTGGGSCSSSSHHHHHHHHH
T ss_pred hhccCCCceeccchHhHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhcccccccCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 678999999
Q ss_pred HHHHHHHHHccCCCCceEEEEeccCChhHHHHHHHcCCccEEEEe-cCCCChhhHHHhhhcccCCceeccccccCCCCCC
Q 004263 627 AVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIE-NSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRI 705 (765)
Q Consensus 627 ~v~a~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~~D~isiE-~~r~~~~~L~~~~~~~~~~~~l~~GVvd~~s~~v 705 (765)
+++++|.++++++++++||+|||||||+. +.|.++++|+|+|| ++|+++++|+.|++ +++.|++||||+|++++
T Consensus 659 av~a~n~a~~g~p~d~~I~tHiC~Gnf~~--~~I~~l~aD~islE~~~Rs~~e~L~~~~~---~~k~V~lGVvds~sp~v 733 (789)
T 3ppg_A 659 AAQSFRVATSGVENSTQIHSHFCYSDLDP--NHIKALDADVVSIEFSKKDDPNYIQEFSE---YPNHIGLGLFDIHSPRI 733 (789)
T ss_dssp HHHHHHHHHSSSCTTSEEEEECC---CCH--HHHHHHCCSEEEEC---------CGGGGG---CCSEEEEC-------CC
T ss_pred HHHHHHHHHhcCCCCcEEEEeccCCCCCh--hHHHhCCCCEEEEecCCCcchHHHHHHHh---cCCeEEeeeecCCCCCC
Confidence 99999999999998999999999999987 99999999999999 88888899998886 47899999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 004263 706 PSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQL 761 (765)
Q Consensus 706 e~~eev~~~i~~a~~~i~~~~l~vsPdCGL~~~~~~~~~~kL~~mv~aa~~~r~~~ 761 (765)
|++|+|+++|+++++++|++++||||||||++++|+++++||++||+||+.+|+++
T Consensus 734 Es~EeV~~rI~~a~~~v~~erL~lsPdCGl~t~~~~~a~akL~~mveaAk~lR~~~ 789 (789)
T 3ppg_A 734 PSKQEFVSRIEEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEFRAKY 789 (789)
T ss_dssp CCHHHHHHHHHHHTTTSCGGGEEECCSCC---CCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999864
|
| >1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* | Back alignment and structure |
|---|
| >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* | Back alignment and structure |
|---|
| >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A | Back alignment and structure |
|---|
| >3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} | Back alignment and structure |
|---|
| >1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* | Back alignment and structure |
|---|
| >3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} | Back alignment and structure |
|---|
| >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* | Back alignment and structure |
|---|
| >1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A | Back alignment and structure |
|---|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A | Back alignment and structure |
|---|
| >2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 | Back alignment and structure |
|---|
| >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} | Back alignment and structure |
|---|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* | Back alignment and structure |
|---|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A | Back alignment and structure |
|---|
| >4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 | Back alignment and structure |
|---|
| >2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} | Back alignment and structure |
|---|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* | Back alignment and structure |
|---|
| >4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A | Back alignment and structure |
|---|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 765 | ||||
| d1u1ha1 | 394 | c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglu | 1e-157 | |
| d1u1ha1 | 394 | c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglu | 2e-71 | |
| d1u1ha2 | 365 | c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltrig | 1e-139 | |
| d1u1ha2 | 365 | c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltrig | 3e-33 |
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 459 bits (1181), Expect = e-157
Identities = 328/394 (83%), Positives = 363/394 (92%)
Query: 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNT 61
ASH+VGYPRMGPKRELKFALESFWDGKS+A++LQ V+ADLR+SIW QM+ AG KFIPSNT
Sbjct: 1 ASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNT 60
Query: 62 FSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIV 121
F++YDQVLDTTAMLGAVPPRY + GGEIG DVYFSMARGNASVPAMEMTKWFDTNYHYIV
Sbjct: 61 FAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIV 120
Query: 122 PELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLI 181
PELGP+VNFSYASHKAV EYKEAKALG++TVPVLVGPVSYLLLSK AKGV+KSF LLSL+
Sbjct: 121 PELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSLL 180
Query: 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE 241
KI+P+YKEV+ ELKAAGATWIQ DEP LV+DL+ KLQAF+ AY+EL+S+LSGLNVL+E
Sbjct: 181 PKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVE 240
Query: 242 TYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWAN 301
TYFAD+PAE YK LTSLKGVT FGFDL+RGTKTLDL+K FP GKYLFAGVVDGRNIWAN
Sbjct: 241 TYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWAN 300
Query: 302 DLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEV 361
D A+SL+TLQ L G VGKDK+VVSTSCSLLHTAVDL NETKLD EIKSW+AFAAQKVVEV
Sbjct: 301 DFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEV 360
Query: 362 NALAKALSGQKDEAYFSSNAAAQASRKSSPRVTN 395
NALAKAL+GQKDEA FS+NAAA ASR+SSPRVTN
Sbjct: 361 NALAKALAGQKDEALFSANAAALASRRSSPRVTN 394
|
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 394 | Back information, alignment and structure |
|---|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 365 | Back information, alignment and structure |
|---|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 365 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 765 | |||
| d1u1ha1 | 394 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1u1ha2 | 365 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1u1ha2 | 365 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1u1ha1 | 394 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1j93a_ | 343 | Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic | 99.17 | |
| d1r3sa_ | 356 | Uroporphyrinogen decarboxylase, UROD {Human (Homo | 99.17 | |
| d1r3sa_ | 356 | Uroporphyrinogen decarboxylase, UROD {Human (Homo | 96.67 | |
| d1j93a_ | 343 | Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic | 96.63 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 88.74 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 84.51 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 80.76 |
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.5e-106 Score=890.56 Aligned_cols=392 Identities=83% Similarity=1.276 Sum_probs=368.1
Q ss_pred eecccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCcc
Q 004263 3 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRY 82 (765)
Q Consensus 3 t~~~G~PRiG~~reLk~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~it~Gefs~yD~vLD~~~~~g~ip~rf 82 (765)
||++||||||++||||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+||||||||||||||+++|||+||+||
T Consensus 2 ~~~lG~PRig~~RELK~A~E~yw~G~is~~eL~~~~~~~~~~~~~~Q~~aGid~I~~GeFs~yD~vLD~~~~~g~iP~Rf 81 (394)
T d1u1ha1 2 SHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPRY 81 (394)
T ss_dssp BBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCGGG
T ss_pred CCcCcCCCCCCchHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeccCCccchHHHHHHHHHcCCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchhhhhhccCCCCCCcccceeecccCceeecceecCCCccccCCccchHHHHHHHHcCCCCceEeehHHHHh
Q 004263 83 SWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYL 162 (765)
Q Consensus 83 ~~~~~~~~l~~yFa~arG~~~~~a~~m~kwfdtNyhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T~l 162 (765)
+...+..++++||+|+||..++.+++|||||||||||+|||+.++++|++..++++++|++|+++|+++||||+||+||+
T Consensus 82 ~~~~~~~~ld~yFa~arg~~~~~a~emtkwfdtnyhy~vPe~~~~~~~~l~~~~~~~~~~ea~~~g~~~Kpvl~GP~T~l 161 (394)
T d1u1ha1 82 GYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYL 161 (394)
T ss_dssp CCCSSSCCHHHHHHHHHCBTTBCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHHHH
T ss_pred ccccccccHHHHHHHHhcCCcccccccccccCCCCCccCCccCCCccccccchhHHHHHHHHhhcCCccccccCCHHHHH
Confidence 87655567999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHccCCCCcEEEEe
Q 004263 163 LLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIET 242 (765)
Q Consensus 163 ~l~~~~~~y~~~~~~~~ll~~L~~~y~~~l~~L~~~G~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~t 242 (765)
+|++..++.+..+++.+++++|+++|++++++|+++||+|||||||+|++++++++++++.++|+.|.+..++++++|+|
T Consensus 162 ~l~k~~~~~~~~~~~~~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~~~~i~l~t 241 (394)
T d1u1ha1 162 LLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVET 241 (394)
T ss_dssp HTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHHHHHHHHHHHTTTTTTSEEEEEC
T ss_pred HHhcccCCCccccCHHHHHHHHHHHHHHHHHHHHhccCCEEEeeccchhccCCHHHHHHHHHHHHHHHhhcCCCCceEEe
Confidence 99985332212358889999999999999999999999999999999999999999999999999998876668999999
Q ss_pred ccCCCchhhHHHHhcC-CCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCcCCHHHHHHHHHHHhhhcCCCc
Q 004263 243 YFADVPAETYKILTSL-KGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDK 321 (765)
Q Consensus 243 yfg~~~~~~~~~l~~l-~~vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~~~ed~~~~~~~l~~~~~~~~~~~ 321 (765)
|||+++++.++.|..+ + |||+||||++++.++..+...+|++|+|++|||||||+|+||+++++++|+++.+++|++|
T Consensus 242 yfg~~~~~~~~~l~~~~~-Vd~l~lD~~~~~~~l~~~~~~~p~~k~L~~GVVdgrniw~ed~e~v~~~i~~~~~~v~~er 320 (394)
T d1u1ha1 242 YFADIPAEAYKTLTSLKG-VTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDK 320 (394)
T ss_dssp CSSCCCHHHHHHHTTCTT-CCEEEEETTTCTTHHHHHHHCCCTTCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHSCSSC
T ss_pred ccCCCchhhHHHHhhcCC-CCeeEEEeecCccchHHHHHhCCcccEEEeeeEecCCCCcCCHHHHHHHHHHHHHhCCccc
Confidence 9999845667777765 7 9999999999888877776679999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhcCCCCCC
Q 004263 322 VVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTN 395 (765)
Q Consensus 322 l~vspsC~L~h~P~~~~~E~~l~~~~~~~lafA~qKl~el~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (765)
|||||||||+|||+|++.|++||+++|+|||||+|||+||++|+++|++.....+++.|++++++|++|+++||
T Consensus 321 l~lspsCsLlh~P~~~~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~n 394 (394)
T d1u1ha1 321 LVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTN 394 (394)
T ss_dssp EEEEESSCGGGSCSCGGGCCSSCHHHHHTBCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHCTTTCC
T ss_pred EEEeCCCCCcCCCCcCccccCCCHHHHhhhchHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999875556779999999999999999997
|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|