Citrus Sinensis ID: 004267

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760----

MSHPAESSDANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDAAAVPRYWI

ccccccccccccccccccHHHHHccccccEEEEcccccccccEEEEcHHHHHHcccccccEEEEEEccccEEEEEEEccccccccEEEEcHHHHHHcccccccEEEEEEccccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccccEEEEEcccEEEEEEEEEEcccccEEEccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHccEEEEEcccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEccccccccHHccccccccEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccHHHHHHHHHccccccccccEEEcccccccccccHHHHHHHHHHHHHHHcccHHHHHHcccccccEEEEEccccccHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHcc

ccccccccccccccccHHHHHHcccccccEEEEEccccccccEEEEcHHHHHHcccccccEEEEEccccEEEEEEEcccccccccEEEEccEEHHccEcccccEEEEEEccccccccEEEEEcccccEcccccHHHHHHHHHHHHHHccccccccEEEEccccccEEEEEEEEccccEEEEccccEEEEcccccccccccccccccHcccccHHHHHHHHHHHHHcccccHHHHHHccccccccEEEEccccccHHHHHHHHHHHHcccEEEEccHHHHHHHHcccHHHHHHHHHHHHHccccEEEEccHHHccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccHHHcccccccEEEEcccccHcHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccHHHHHHHHHcccccHccEEEEEcccccHcHcccHHHHHHHHHHHHccccccHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHccccEEEEccHHHHHHHHcHcHHHHHHHHHHHHHHccEEEEEcHHHHHcHHccccccccccHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHcccccccEEEEEccccHHHHHHHHHHHHccccccccccHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccEcHHHHHHHHHHccccccHHHHHHHHHHc

mshpaessdansgkkdySTAILerkkspnrlvvdeainddnsvvglhpdtmdklqifrgdtilikgkkrkDTICIALAddtceqpkirmnkVVRSNLRVRLgdvvsvhqcpdvkygkrvhilpiddtiegvtgnlfdaflrpyfteayrpvrkgdlflvrggmrsvefkvietdpgeycvvapdteifcegepikrededrldevgyddvggVRKQMAQIRELVElplrhpqlfksigvkppkgillygppgsgkTLIARAVANETgafffcingpeimsKLAGESESNLRKAFEEAeknapsiifideidsiapkrekthgeVERRIVSQLLTLMDGLKSRAHVIVIgatnrpnsidpalrrfgrfdreidigvpdevgRLEVLRIHtknmklsddvdleriakdthgyvgADLAALCTEAALQCIREKmdvidledeTIDAEILNSMAVSNEHFQtalgtsnpsaLRETVVevpnvswedigglENVKRELQETvqypvehpekfekfgmspskgvlfygppgcgkTLLAKAIANECQanfisvkgpelltmwfgesEANVREIFDKArqsapcvlffDELDSIatqrgssvgdaggAADRVLNQLLTEMDGMSAKKTVFIIgatnrpdiidpallrpgrldqliyiplpdedsrHQIFKAClrkspvskdvDLRALAKYtqgfsgadITEICQRACKYAIRENIEKDIERErrrrdnpeamdedaAEDEVSEIKAAHFEESMKFARRSIcsdaaavprywi

mshpaessdansgkkdystailerkkspnrlvvdeainddnsvvglhpdtmdklQIFRgdtilikgkkrkdtICIAladdtceqpkirmnkvvrsnlrvrlgdvvsvhqcpdvkygkrvhilpiddtiegVTGNLFDAFLRPYFTEAYRPVRKGdlflvrggmrsvefkvietdpgeycvvapdteifcegepikrededrldevgyddvggVRKQMAQIRELVelplrhpqlfksigvkppkgILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEaeknapsiifideidsiapkrekthgeverRIVSQLLTLMDGLKSRAHVIVigatnrpnsidpalRRFGrfdreidigvpdevgrlevlrihtknmklsddvdLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQrgssvgdaggAADRVLNQLLTEMDGMSAKKTVFIIGatnrpdiidpallrPGRLDQLIYIPLPDEDSRHQIFKAClrkspvskdvdLRALAKytqgfsgaditEICQRACKYAIReniekdiererrrrdnpeamdedaaedEVSEIKAAHFEESMKFARRSIcsdaaavprywi

MSHPAESSDANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQrgssvgdaggaadrvLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAireniekdiererrrrdnPeamdedaaedeVSEIKAAHFEESMKFARRSICSDAAAVPRYWI

*******************************VVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPI*******LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM***********************SIIFIDEIDSIA********EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALG*****ALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVE****FEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ*********GAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENI********************************************IC***********

******************************LVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHIL***********NLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTE********************YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDS*****************SQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK**************ILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS******************VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE***************AAEDEVSEIKAAHFEESMKFARRSICSDAAAVPRYWI

*****************STAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK********ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE*******************SEIKAAHFEESMKFARRSICSDAAAVPRYWI

***************DYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR********GAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRD**********EDEVSEIKAAHFEESMKFARRSICSDAAAVPRYWI

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		764	2.2.26 [Sep-21-2011]
P54774		807	Cell division cycle prote	yes	no	0.988	0.935	0.952	0.0
Q9LZF6		810	Cell division control pro	yes	no	0.986	0.930	0.928	0.0
Q96372		805	Cell division cycle prote	N/A	no	0.985	0.935	0.923	0.0
Q9SCN8		815	Cell division control pro	no	no	0.985	0.923	0.915	0.0
P54609		809	Cell division control pro	yes	no	0.985	0.930	0.923	0.0
P23787		805	Transitional endoplasmic	N/A	no	0.979	0.929	0.785	0.0
Q7ZU99		806	Transitional endoplasmic	yes	no	0.979	0.928	0.788	0.0
Q6GL04		805	Transitional endoplasmic	yes	no	0.979	0.929	0.788	0.0
Q01853		806	Transitional endoplasmic	yes	no	0.979	0.928	0.789	0.0
P55072		806	Transitional endoplasmic	yes	no	0.979	0.928	0.789	0.0

>sp\|P54774\|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1	Back alignment and function desciption

 Score = 1487 bits (3849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 720/756 (95%), Positives = 743/756 (98%), Gaps = 1/756 (0%)

Query: 1   MSHPAESSDANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGD 60
           MS   ESSD  SGKKD+STAILERKKSPNRLVVDEA+NDDNSVV +HP TM+KLQ+FRGD
Sbjct: 1   MSQQGESSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRGD 60

Query: 61  TILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH 120
           TILIKGKKRKDTICIALAD+ CE+PKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
Sbjct: 61  TILIKGKKRKDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH 120

Query: 121 ILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCV 180
           ILPIDDTIEGVTGNLFDAFL+PYF EAYRPVRKGDLFLVRGGMRSVEFKV+ETDPGEYCV
Sbjct: 121 ILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVVETDPGEYCV 180

Query: 181 VAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK 240
           VAPDTEIFCEGEP+KREDE+RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
Sbjct: 181 VAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK 240

Query: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300
           PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360
           APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360

Query: 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCT 420
           LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCT
Sbjct: 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCT 420

Query: 421 EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW 480
           EAALQCIREKMDVIDLEDETIDAE+LNSMAV+NEHFQTALGTSNPSALRETVVEVPNVSW
Sbjct: 421 EAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW 480

Query: 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540
           EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
Sbjct: 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540

Query: 541 ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA 600
           ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
Sbjct: 541 ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA 600

Query: 601 ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI 660
           ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
Sbjct: 601 ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI 660

Query: 661 FKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDN 720
           FKACLRKSP++K+VDLRALA++TQGFSGADITEICQRACKYAIRENIEKDIERER+ R+N
Sbjct: 661 FKACLRKSPIAKNVDLRALARHTQGFSGADITEICQRACKYAIRENIEKDIERERKSREN 720

Query: 721 PEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDA 756
           PEAMDED  +DEV+EIKAAHFEESMKFARRS+ SDA
Sbjct: 721 PEAMDEDTVDDEVAEIKAAHFEESMKFARRSV-SDA 755

Probably functions in cell division and growth processes.
Glycine max (taxid: 3847)

>sp\|Q9LZF6\|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=1 SV=2	Back alignment and function description

>sp\|Q96372\|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1	Back alignment and function description

>sp\|Q9SCN8\|CD48D_ARATH Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1	Back alignment and function description

>sp\|P54609\|CD48A_ARATH Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1	Back alignment and function description

>sp\|P23787\|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3	Back alignment and function description

>sp\|Q7ZU99\|TERA_DANRE Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1	Back alignment and function description

>sp\|Q6GL04\|TERA_XENTR Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1	Back alignment and function description

>sp\|Q01853\|TERA_MOUSE Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4	Back alignment and function description

>sp\|P55072\|TERA_HUMAN Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		764
351727028		807	cell division cycle protein 48 homolog [	0.988	0.935	0.952	0.0
356543494		807	PREDICTED: cell division cycle protein 4	0.988	0.935	0.951	0.0
356505246		808	PREDICTED: cell division cycle protein 4	0.988	0.934	0.948	0.0
356572464		808	PREDICTED: cell division cycle protein 4	0.988	0.934	0.945	0.0
255556938		805	Transitional endoplasmic reticulum ATPas	0.986	0.936	0.951	0.0
98962497		808	putative spindle disassembly related pro	0.986	0.933	0.943	0.0
255556934		806	Transitional endoplasmic reticulum ATPas	0.986	0.935	0.956	0.0
209865725		805	cell division cycle protein [Dimocarpus	0.986	0.936	0.953	0.0
449440119		804	PREDICTED: cell division cycle protein 4	0.986	0.937	0.936	0.0
239819394		805	cell division control protein [Nicotiana	0.986	0.936	0.932	0.0

>gi\|351727028\|ref\|NP_001235099.1\| cell division cycle protein 48 homolog [Glycine max] gi\|1705678\|sp\|P54774.1\|CDC48_SOYBN RecName: Full=Cell division cycle protein 48 homolog; AltName: Full=Valosin-containing protein homolog; Short=VCP gi\|862480\|gb\|AAA80587.1\| valosin-containing protein [Glycine max] gi\|86212372\|gb\|ABC87759.1\| plamsma membrane-associated AAA-ATPase [Glycine max]	Back alignment and taxonomy information

 Score = 1487 bits (3849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 720/756 (95%), Positives = 743/756 (98%), Gaps = 1/756 (0%)

Query: 1   MSHPAESSDANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGD 60
           MS   ESSD  SGKKD+STAILERKKSPNRLVVDEA+NDDNSVV +HP TM+KLQ+FRGD
Sbjct: 1   MSQQGESSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRGD 60

Query: 61  TILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH 120
           TILIKGKKRKDTICIALAD+ CE+PKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
Sbjct: 61  TILIKGKKRKDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH 120

Query: 121 ILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCV 180
           ILPIDDTIEGVTGNLFDAFL+PYF EAYRPVRKGDLFLVRGGMRSVEFKV+ETDPGEYCV
Sbjct: 121 ILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVVETDPGEYCV 180

Query: 181 VAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK 240
           VAPDTEIFCEGEP+KREDE+RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
Sbjct: 181 VAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK 240

Query: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300
           PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360
           APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360

Query: 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCT 420
           LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCT
Sbjct: 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCT 420

Query: 421 EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW 480
           EAALQCIREKMDVIDLEDETIDAE+LNSMAV+NEHFQTALGTSNPSALRETVVEVPNVSW
Sbjct: 421 EAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW 480

Query: 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540
           EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
Sbjct: 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540

Query: 541 ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA 600
           ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
Sbjct: 541 ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA 600

Query: 601 ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI 660
           ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
Sbjct: 601 ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI 660

Query: 661 FKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDN 720
           FKACLRKSP++K+VDLRALA++TQGFSGADITEICQRACKYAIRENIEKDIERER+ R+N
Sbjct: 661 FKACLRKSPIAKNVDLRALARHTQGFSGADITEICQRACKYAIRENIEKDIERERKSREN 720

Query: 721 PEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDA 756
           PEAMDED  +DEV+EIKAAHFEESMKFARRS+ SDA
Sbjct: 721 PEAMDEDTVDDEVAEIKAAHFEESMKFARRSV-SDA 755

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356543494\|ref\|XP_003540195.1\| PREDICTED: cell division cycle protein 48 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|356505246\|ref\|XP_003521403.1\| PREDICTED: cell division cycle protein 48 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|356572464\|ref\|XP_003554388.1\| PREDICTED: cell division cycle protein 48 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|255556938\|ref\|XP_002519502.1\| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] gi\|223541365\|gb\|EEF42916.1\| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|98962497\|gb\|ABF59516.1\| putative spindle disassembly related protein CDC48 [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|255556934\|ref\|XP_002519500.1\| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] gi\|223541363\|gb\|EEF42914.1\| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|209865725\|gb\|ACC66148.3\| cell division cycle protein [Dimocarpus longan] gi\|221327637\|gb\|ACM17483.1\| cell division cycle protein [Dimocarpus longan]	Back alignment and taxonomy information

>gi\|449440119\|ref\|XP_004137832.1\| PREDICTED: cell division cycle protein 48 homolog [Cucumis sativus] gi\|449525650\|ref\|XP_004169829.1\| PREDICTED: cell division cycle protein 48 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|239819394\|gb\|ACS28251.1\| cell division control protein [Nicotiana glutinosa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		764
TAIR\|locus:2831844		810	AtCDC48C "cell division cycle	0.986	0.930	0.882	0.0
TAIR\|locus:2101933		815	AtCDC48B "AT3G53230" [Arabidop	0.985	0.923	0.873	0.0
TAIR\|locus:2085064		809	CDC48 "cell division cycle 48"	0.985	0.930	0.879	0.0
DICTYBASE\|DDB_G0288065		793	cdcD "CDC48 family AAA ATPase"	0.968	0.933	0.784	1.59999999856e-315
ZFIN\|ZDB-GENE-030131-5408		806	vcp "valosin containing protei	0.977	0.926	0.754	9.5e-311
UNIPROTKB\|P55072		806	VCP "Transitional endoplasmic	0.977	0.926	0.757	2.5e-310
MGI\|MGI:99919		806	Vcp "valosin containing protei	0.977	0.926	0.757	2.5e-310
RGD\|621595		806	Vcp "valosin-containing protei	0.977	0.926	0.757	2.5e-310
UNIPROTKB\|E2RLQ9		822	VCP "Uncharacterized protein"	0.980	0.911	0.755	5.2e-310
UNIPROTKB\|Q6GL04		805	vcp "Transitional endoplasmic	0.977	0.927	0.756	6.7e-310

TAIR\|locus:2831844 AtCDC48C "cell division cycle 48C" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3429 (1212.1 bits), Expect = 0., P = 0.
 Identities = 667/756 (88%), Positives = 697/756 (92%)

Query:     1 MSHPAESSDANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGD 60
             MS+  ESSD+ + KKD+STAILERKKSPNRLVVDEAINDDNSVV LHP TM+KLQ+FRGD
Sbjct:     1 MSNEPESSDSKT-KKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGD 59

Query:    61 TILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH 120
             TILIKGKKRKDT+CIALAD+TCE+PKIRMNKVVRSNLRVRLGDV+SVHQCPDVKYGKRVH
Sbjct:    60 TILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVH 119

Query:   121 ILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCV 180
             ILP+DDT+EGVTGNLFDA+L+PYF EAYRPVRKGDLFLVRGGMRSVEFKVIETDP EYCV
Sbjct:   120 ILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCV 179

Query:   181 VAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK 240
             VAPDTEIFCEGEP+KREDE+RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
Sbjct:   180 VAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK 239

Query:   241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300
             PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
Sbjct:   240 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299

Query:   301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360
             APSIIFIDEIDSIAPKREKT+GEVERRIVSQLLTLMDGLKSRAHVIV+GATNRPNSIDPA
Sbjct:   300 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 359

Query:   361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCT 420
             LRRFGRFDREIDIGVPDE+GRLEVLRIHTKNMKL++DVDLERI+KDTHGYVGADLAALCT
Sbjct:   360 LRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCT 419

Query:   421 EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW 480
             EAALQCIREKMDVIDLED++IDAEILNSMAVSNEHF TALG SNPSALRETVVEVPNVSW
Sbjct:   420 EAALQCIREKMDVIDLEDDSIDAEILNSMAVSNEHFHTALGNSNPSALRETVVEVPNVSW 479

Query:   481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540
             EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
Sbjct:   480 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 539

Query:   541 ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXXXXX 600
             ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ           
Sbjct:   540 ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSAGDAGGA 599

Query:   601 XXXXLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI 660
                 LNQLLTEMDGM+AKKTVFIIGATNRPDIID ALLRPGRLDQLIYIPLPDEDSR  I
Sbjct:   600 ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNI 659

Query:   661 FKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAXXXXXXXXXXXXXXXXXX 720
             FKACLRKSPV+KDVD+ ALAKYTQGFSGADITEICQRACKYA                  
Sbjct:   660 FKACLRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQN 719

Query:   721 PXXXXXXXXXXXVSEIKAAHFEESMKFARRSICSDA 756
             P           VSEI+AAHFEESMK+ARRS+ SDA
Sbjct:   720 PEAMEEDMVDDEVSEIRAAHFEESMKYARRSV-SDA 754

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR\|locus:2101933 AtCDC48B "AT3G53230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2085064 CDC48 "cell division cycle 48" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0288065 cdcD "CDC48 family AAA ATPase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-5408 vcp "valosin containing protein" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|P55072 VCP "Transitional endoplasmic reticulum ATPase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:99919 Vcp "valosin containing protein" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|621595 Vcp "valosin-containing protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RLQ9 VCP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6GL04 vcp "Transitional endoplasmic reticulum ATPase" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q58556	Y1156_METJA	No assigned EC number	0.5244	0.8913	0.7541	yes	no
P54609	CD48A_ARATH	No assigned EC number	0.9233	0.9856	0.9307	yes	no
Q9SCN8	CD48D_ARATH	No assigned EC number	0.9153	0.9856	0.9239	no	no
P46462	TERA_RAT	No assigned EC number	0.7893	0.9790	0.9280	yes	no
Q3ZBT1	TERA_BOVIN	No assigned EC number	0.788	0.9790	0.9280	yes	no
O28972	Y1297_ARCFU	No assigned EC number	0.5034	0.9214	0.9604	yes	no
Q9P3A7	CDC48_SCHPO	No assigned EC number	0.6954	0.9712	0.9104	yes	no
P55072	TERA_HUMAN	No assigned EC number	0.7893	0.9790	0.9280	yes	no
Q01853	TERA_MOUSE	No assigned EC number	0.7893	0.9790	0.9280	yes	no
Q5AWS6	CDC48_EMENI	No assigned EC number	0.6986	0.9829	0.9125	yes	no
Q8SSJ5	CDC48_ENCCU	No assigned EC number	0.6018	0.9620	0.9423	yes	no
Q7KN62	TERA_DROME	No assigned EC number	0.756	0.9725	0.9275	yes	no
Q96372	CDC48_CAPAN	No assigned EC number	0.9232	0.9856	0.9354	N/A	no
P54811	TERA1_CAEEL	No assigned EC number	0.7154	0.9869	0.9320	no	no
P54812	TERA2_CAEEL	No assigned EC number	0.7374	0.9856	0.9296	yes	no
Q7ZU99	TERA_DANRE	No assigned EC number	0.788	0.9790	0.9280	yes	no
Q6GL04	TERA_XENTR	No assigned EC number	0.788	0.9790	0.9291	yes	no
O05209	VAT_THEAC	No assigned EC number	0.5235	0.7958	0.8161	yes	no
P54774	CDC48_SOYBN	No assigned EC number	0.9523	0.9882	0.9355	yes	no
P25694	CDC48_YEAST	No assigned EC number	0.7003	0.9659	0.8838	yes	no
P23787	TERA_XENLA	No assigned EC number	0.7853	0.9790	0.9291	N/A	no
Q9LZF6	CD48E_ARATH	No assigned EC number	0.9285	0.9869	0.9308	yes	no
P03974	TERA_PIG	No assigned EC number	0.7866	0.9790	0.9280	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_600258.1	annotation not avaliable (810 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		764
TIGR01243		733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	0.0
COG0464		494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	0.0
PRK03992		389	PRK03992, PRK03992, proteasome-activating nucleoti	7e-96
COG1222		406	COG1222, RPT1, ATP-dependent 26S proteasome regula	6e-95
PRK03992		389	PRK03992, PRK03992, proteasome-activating nucleoti	6e-94
COG1222		406	COG1222, RPT1, ATP-dependent 26S proteasome regula	4e-91
TIGR01243		733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	2e-87
TIGR01242		364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	3e-86
TIGR01242		364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	3e-83
COG0464		494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	2e-81
TIGR01241		495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	8e-74
TIGR01241		495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	3e-73
PTZ00454		398	PTZ00454, PTZ00454, 26S protease regulatory subuni	5e-73
PTZ00361		438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	3e-72
CHL00176		638	CHL00176, ftsH, cell division protein; Validated	3e-68
PTZ00454		398	PTZ00454, PTZ00454, 26S protease regulatory subuni	1e-67
COG0465		596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	5e-65
CHL00176		638	CHL00176, ftsH, cell division protein; Validated	5e-63
COG0465		596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	7e-62
PTZ00361		438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	5e-61
PRK10733		644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	6e-60
pfam00004		131	pfam00004, AAA, ATPase family associated with vari	2e-56
TIGR03689		512	TIGR03689, pup_AAA, proteasome ATPase	2e-56
pfam00004		131	pfam00004, AAA, ATPase family associated with vari	3e-55
TIGR03689		512	TIGR03689, pup_AAA, proteasome ATPase	2e-54
PRK10733		644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	4e-53
COG1223		368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	1e-51
COG1223		368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	7e-51
COG0464		494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	8e-45
CHL00195		489	CHL00195, ycf46, Ycf46; Provisional	8e-33
cd00009		151	cd00009, AAA, The AAA+ (ATPases Associated with a	9e-32
cd00009		151	cd00009, AAA, The AAA+ (ATPases Associated with a	2e-30
pfam02359		84	pfam02359, CDC48_N, Cell division protein 48 (CDC4	2e-22
smart00382		148	smart00382, AAA, ATPases associated with a variety	2e-20
smart00382		148	smart00382, AAA, ATPases associated with a variety	4e-20
smart01073		82	smart01073, CDC48_N, Cell division protein 48 (CDC	8e-20
CHL00195		489	CHL00195, ycf46, Ycf46; Provisional	3e-16
PRK13342		413	PRK13342, PRK13342, recombination factor protein R	1e-11
smart01072		64	smart01072, CDC48_2, Cell division protein 48 (CDC	3e-10
COG2256		436	COG2256, MGS1, ATPase related to the helicase subu	2e-09
PRK13342		413	PRK13342, PRK13342, recombination factor protein R	1e-08
COG0542		786	COG0542, clpA, ATP-binding subunits of Clp proteas	7e-08
COG0714		329	COG0714, COG0714, MoxR-like ATPases [General funct	1e-07
TIGR03922		557	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas	1e-07
COG0593		408	COG0593, DnaA, ATPase involved in DNA replication	1e-07
TIGR03922		557	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas	2e-07
PRK13341		725	PRK13341, PRK13341, recombination factor protein R	2e-07
pfam02933		61	pfam02933, CDC48_2, Cell division protein 48 (CDC4	3e-07
COG2255		332	COG2255, RuvB, Holliday junction resolvasome, heli	3e-07
PRK00080		328	PRK00080, ruvB, Holliday junction DNA helicase Ruv	4e-07
pfam07728		135	pfam07728, AAA_5, AAA domain (dynein-related subfa	6e-07
TIGR00635		305	TIGR00635, ruvB, Holliday junction DNA helicase, R	9e-07
COG2256		436	COG2256, MGS1, ATPase related to the helicase subu	1e-06
PRK00080		328	PRK00080, ruvB, Holliday junction DNA helicase Ruv	3e-06
PHA02544		316	PHA02544, 44, clamp loader, small subunit; Provisi	3e-06
pfam05496		231	pfam05496, RuvB_N, Holliday junction DNA helicase	5e-06
COG2255		332	COG2255, RuvB, Holliday junction resolvasome, heli	8e-06
pfam13401		124	pfam13401, AAA_22, AAA domain	9e-06
pfam07724		168	pfam07724, AAA_2, AAA domain (Cdc48 subfamily)	1e-05
TIGR00635		305	TIGR00635, ruvB, Holliday junction DNA helicase, R	2e-05
COG0714		329	COG0714, COG0714, MoxR-like ATPases [General funct	3e-05
COG1484		254	COG1484, DnaC, DNA replication protein [DNA replic	5e-05
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	5e-05
TIGR00382		413	TIGR00382, clpX, endopeptidase Clp ATP-binding reg	5e-05
PRK04195		482	PRK04195, PRK04195, replication factor C large sub	6e-05
COG1224		450	COG1224, TIP49, DNA helicase TIP49, TBP-interactin	9e-05
PRK13341		725	PRK13341, PRK13341, recombination factor protein R	1e-04
pfam05496		231	pfam05496, RuvB_N, Holliday junction DNA helicase	2e-04
COG1484		254	COG1484, DnaC, DNA replication protein [DNA replic	2e-04
pfam06068		395	pfam06068, TIP49, TIP49 C-terminus	3e-04
COG1219		408	COG1219, ClpX, ATP-dependent protease Clp, ATPase	4e-04
PRK05342		412	PRK05342, clpX, ATP-dependent protease ATP-binding	4e-04
pfam07724		168	pfam07724, AAA_2, AAA domain (Cdc48 subfamily)	5e-04
PRK08116		268	PRK08116, PRK08116, hypothetical protein; Validate	5e-04
COG1474		366	COG1474, CDC6, Cdc6-related protein, AAA superfami	8e-04
PRK06835		329	PRK06835, PRK06835, DNA replication protein DnaC;	0.001
pfam00910		105	pfam00910, RNA_helicase, RNA helicase	0.001
cd01120		165	cd01120, RecA-like_NTPases, RecA-like NTPases	0.001
PRK08116		268	PRK08116, PRK08116, hypothetical protein; Validate	0.002
TIGR02639		730	TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi	0.002
pfam13207		114	pfam13207, AAA_17, AAA domain	0.003
TIGR02881		261	TIGR02881, spore_V_K, stage V sporulation protein	0.003
pfam01057		271	pfam01057, Parvo_NS1, Parvovirus non-structural pr	0.004

>gnl\|CDD\|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily	Back alignment and domain information

 Score =  735 bits (1898), Expect = 0.0
 Identities = 360/728 (49%), Positives = 501/728 (68%), Gaps = 21/728 (2%)

Query: 30  RLVVDEAINDD--NSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIA-LADDTCEQPK 86
            L V EA   D    +V +   T  +L +  GD + I+   R     +  L  D   +  
Sbjct: 3   ELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIEKGDRSVVAIVWPLRPDDEGRGI 62

Query: 87  IRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTE 146
           IRM+  +R+N  V +GD V+V +  +VK  K+V + P   T     G  F  +++ +   
Sbjct: 63  IRMDGYLRANAGVTIGDTVTVERA-EVKEAKKVVLAP---TQPIRFGRDFVDYVKEFLLG 118

Query: 147 AYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEDRLDEVG 206
             +P+ KG+  +V     ++ F V+ T P  +  V   TE+    +P++ E E ++ +V 
Sbjct: 119 --KPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEATEVEIREKPVREEIERKVPKVT 176

Query: 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266
           Y+D+GG+++   +IRE+VELP++HP+LF+ +G++PPKG+LLYGPPG+GKTL+A+AVANE 
Sbjct: 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236

Query: 267 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 326
           GA+F  INGPEIMSK  GESE  LR+ F+EAE+NAPSIIFIDEID+IAPKRE+  GEVE+
Sbjct: 237 GAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEK 296

Query: 327 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLR 386
           R+V+QLLTLMDGLK R  VIVIGATNRP+++DPALRR GRFDREI I VPD+  R E+L+
Sbjct: 297 RVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILK 356

Query: 387 IHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDV--IDLEDETIDAE 444
           +HT+NM L++DVDL+++A+ THG+VGADLAAL  EAA+  +R  +    I+ E E I AE
Sbjct: 357 VHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAE 416

Query: 445 ILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHP 504
           +L  + V+ + F  AL    PSA+RE +VEVPNV W DIGGLE VK+EL+E V++P++HP
Sbjct: 417 VLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHP 476

Query: 505 EKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 564
           E FEK G+ P KGVL +GPPG GKTLLAKA+A E  ANFI+V+GPE+L+ W GESE  +R
Sbjct: 477 EIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIR 536

Query: 565 EIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624
           EIF KARQ+AP ++FFDE+D+IA  RG+    +    DR++NQLLTEMDG+     V +I
Sbjct: 537 EIFRKARQAAPAIIFFDEIDAIAPARGARFDTS--VTDRIVNQLLTEMDGIQELSNVVVI 594

Query: 625 GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQ 684
            ATNRPDI+DPALLRPGR D+LI +P PDE++R +IFK   R  P+++DVDL  LA+ T+
Sbjct: 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTE 654

Query: 685 GFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEES 744
           G++GADI  +C+ A   A+RE+I     +E+      E  +E+  +D    ++  HF E+
Sbjct: 655 GYTGADIEAVCREAAMAALRESI-GSPAKEKL-----EVGEEEFLKDLK--VEMRHFLEA 706

Query: 745 MKFARRSI 752
           +K  + S+
Sbjct: 707 LKKVKPSV 714

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl\|CDD\|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional	Back alignment and domain information

>gnl\|CDD\|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional	Back alignment and domain information

>gnl\|CDD\|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily	Back alignment and domain information

>gnl\|CDD\|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family	Back alignment and domain information

>gnl\|CDD\|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family	Back alignment and domain information

>gnl\|CDD\|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH	Back alignment and domain information

>gnl\|CDD\|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH	Back alignment and domain information

>gnl\|CDD\|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|214386 CHL00176, ftsH, cell division protein; Validated	Back alignment and domain information

>gnl\|CDD\|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|214386 CHL00176, ftsH, cell division protein; Validated	Back alignment and domain information

>gnl\|CDD\|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed	Back alignment and domain information

>gnl\|CDD\|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)	Back alignment and domain information

>gnl\|CDD\|200312 TIGR03689, pup_AAA, proteasome ATPase	Back alignment and domain information

>gnl\|CDD\|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)	Back alignment and domain information

>gnl\|CDD\|200312 TIGR03689, pup_AAA, proteasome ATPase	Back alignment and domain information

>gnl\|CDD\|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed	Back alignment and domain information

>gnl\|CDD\|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|177094 CHL00195, ycf46, Ycf46; Provisional	Back alignment and domain information

>gnl\|CDD\|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>gnl\|CDD\|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>gnl\|CDD\|216993 pfam02359, CDC48_N, Cell division protein 48 (CDC48), N-terminal domain	Back alignment and domain information

>gnl\|CDD\|214640 smart00382, AAA, ATPases associated with a variety of cellular activities	Back alignment and domain information

>gnl\|CDD\|214640 smart00382, AAA, ATPases associated with a variety of cellular activities	Back alignment and domain information

>gnl\|CDD\|215012 smart01073, CDC48_N, Cell division protein 48 (CDC48) N-terminal domain	Back alignment and domain information

>gnl\|CDD\|177094 CHL00195, ycf46, Ycf46; Provisional	Back alignment and domain information

>gnl\|CDD\|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed	Back alignment and domain information

>gnl\|CDD\|215011 smart01072, CDC48_2, Cell division protein 48 (CDC48) domain 2	Back alignment and domain information

>gnl\|CDD\|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed	Back alignment and domain information

>gnl\|CDD\|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	Back alignment and domain information

>gnl\|CDD\|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	Back alignment and domain information

>gnl\|CDD\|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|202475 pfam02933, CDC48_2, Cell division protein 48 (CDC48), domain 2	Back alignment and domain information

>gnl\|CDD\|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>gnl\|CDD\|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)	Back alignment and domain information

>gnl\|CDD\|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>gnl\|CDD\|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>gnl\|CDD\|222866 PHA02544, 44, clamp loader, small subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus	Back alignment and domain information

>gnl\|CDD\|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|222104 pfam13401, AAA_22, AAA domain	Back alignment and domain information

>gnl\|CDD\|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily)	Back alignment and domain information

>gnl\|CDD\|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>gnl\|CDD\|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|224401 COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX)	Back alignment and domain information

>gnl\|CDD\|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription]	Back alignment and domain information

>gnl\|CDD\|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus	Back alignment and domain information

>gnl\|CDD\|224401 COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|147949 pfam06068, TIP49, TIP49 C-terminus	Back alignment and domain information

>gnl\|CDD\|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional	Back alignment and domain information

>gnl\|CDD\|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily)	Back alignment and domain information

>gnl\|CDD\|236153 PRK08116, PRK08116, hypothetical protein; Validated	Back alignment and domain information

>gnl\|CDD\|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated	Back alignment and domain information

>gnl\|CDD\|216186 pfam00910, RNA_helicase, RNA helicase	Back alignment and domain information

>gnl\|CDD\|238540 cd01120, RecA-like_NTPases, RecA-like NTPases	Back alignment and domain information

>gnl\|CDD\|236153 PRK08116, PRK08116, hypothetical protein; Validated	Back alignment and domain information

>gnl\|CDD\|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA	Back alignment and domain information

>gnl\|CDD\|221983 pfam13207, AAA_17, AAA domain	Back alignment and domain information

>gnl\|CDD\|163057 TIGR02881, spore_V_K, stage V sporulation protein K	Back alignment and domain information

>gnl\|CDD\|216270 pfam01057, Parvo_NS1, Parvovirus non-structural protein NS1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		764
KOG0730		693	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0733		802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	100.0
TIGR01243		733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	100.0
KOG0736		953	consensus Peroxisome assembly factor 2 containing	100.0
KOG0735		952	consensus AAA+-type ATPase [Posttranslational modi	100.0
COG0464		494	SpoVK ATPases of the AAA+ class [Posttranslational	100.0
KOG0741		744	consensus AAA+-type ATPase [Posttranslational modi	100.0
COG1222		406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
KOG0738		491	consensus AAA+-type ATPase [Posttranslational modi	100.0
COG1222		406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
KOG0728		404	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0727		408	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0733		802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	100.0
KOG0734		752	consensus AAA+-type ATPase containing the peptidas	100.0
KOG0730		693	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0726		440	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0739		439	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0729		435	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0652		424	consensus 26S proteasome regulatory complex, ATPas	100.0
CHL00195		489	ycf46 Ycf46; Provisional	100.0
KOG0731		774	consensus AAA+-type ATPase containing the peptidas	100.0
KOG0736		953	consensus Peroxisome assembly factor 2 containing	100.0
KOG0737		386	consensus AAA+-type ATPase [Posttranslational modi	100.0
PTZ00454		398	26S protease regulatory subunit 6B-like protein; P	100.0
COG0465		596	HflB ATP-dependent Zn proteases [Posttranslational	100.0
COG1223		368	Predicted ATPase (AAA+ superfamily) [General funct	100.0
PRK03992		389	proteasome-activating nucleotidase; Provisional	100.0
PTZ00361		438	26 proteosome regulatory subunit 4-like protein; P	100.0
KOG0741		744	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0728		404	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0738		491	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0652		424	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0727		408	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0734		752	consensus AAA+-type ATPase containing the peptidas	100.0
KOG0651		388	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0726		440	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0735		952	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0732		1080	consensus AAA+-type ATPase containing the bromodom	100.0
COG1223		368	Predicted ATPase (AAA+ superfamily) [General funct	100.0
TIGR01241		495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	100.0
KOG0740		428	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0729		435	consensus 26S proteasome regulatory complex, ATPas	100.0
TIGR03689		512	pup_AAA proteasome ATPase. In the Actinobacteria,	100.0
TIGR01242		364	26Sp45 26S proteasome subunit P45 family. Many pro	100.0
CHL00176		638	ftsH cell division protein; Validated	100.0
PTZ00454		398	26S protease regulatory subunit 6B-like protein; P	100.0
KOG0739		439	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0732		1080	consensus AAA+-type ATPase containing the bromodom	100.0
PRK10733		644	hflB ATP-dependent metalloprotease; Reviewed	100.0
KOG0731		774	consensus AAA+-type ATPase containing the peptidas	100.0
CHL00206		2281	ycf2 Ycf2; Provisional	100.0
KOG0737		386	consensus AAA+-type ATPase [Posttranslational modi	100.0
TIGR01243		733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	100.0
COG0464		494	SpoVK ATPases of the AAA+ class [Posttranslational	100.0
PRK03992		389	proteasome-activating nucleotidase; Provisional	100.0
PTZ00361		438	26 proteosome regulatory subunit 4-like protein; P	100.0
PLN00020		413	ribulose bisphosphate carboxylase/oxygenase activa	100.0
COG0465		596	HflB ATP-dependent Zn proteases [Posttranslational	100.0
TIGR02639		731	ClpA ATP-dependent Clp protease ATP-binding subuni	100.0
PRK11034		758	clpA ATP-dependent Clp protease ATP-binding subuni	100.0
CHL00195		489	ycf46 Ycf46; Provisional	100.0
TIGR01242		364	26Sp45 26S proteasome subunit P45 family. Many pro	100.0
KOG0651		388	consensus 26S proteasome regulatory complex, ATPas	100.0
TIGR01241		495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	100.0
TIGR03689		512	pup_AAA proteasome ATPase. In the Actinobacteria,	100.0
CHL00176		638	ftsH cell division protein; Validated	99.97
KOG0740		428	consensus AAA+-type ATPase [Posttranslational modi	99.97
TIGR03345		852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.97
PLN00020		413	ribulose bisphosphate carboxylase/oxygenase activa	99.97
CHL00095		821	clpC Clp protease ATP binding subunit	99.97
PRK10733		644	hflB ATP-dependent metalloprotease; Reviewed	99.96
CHL00206		2281	ycf2 Ycf2; Provisional	99.96
TIGR03346		852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.96
PRK10865		857	protein disaggregation chaperone; Provisional	99.96
COG0542		786	clpA ATP-binding subunits of Clp protease and DnaK	99.95
KOG0744		423	consensus AAA+-type ATPase [Posttranslational modi	99.89
CHL00181		287	cbbX CbbX; Provisional	99.89
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	99.88
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.87
PF00004		132	AAA: ATPase family associated with various cellula	99.87
KOG0743		457	consensus AAA+-type ATPase [Posttranslational modi	99.87
KOG0742		630	consensus AAA+-type ATPase [Posttranslational modi	99.86
PF00004		132	AAA: ATPase family associated with various cellula	99.83
CHL00181		287	cbbX CbbX; Provisional	99.79
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.77
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	99.76
TIGR00763		775	lon ATP-dependent protease La. This protein is ind	99.73
PF05496		233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.73
TIGR02639		731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.71
KOG0742		630	consensus AAA+-type ATPase [Posttranslational modi	99.71
KOG0744		423	consensus AAA+-type ATPase [Posttranslational modi	99.7
KOG0743		457	consensus AAA+-type ATPase [Posttranslational modi	99.7
PF05496		233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.68
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.68
KOG1051		898	consensus Chaperone HSP104 and related ATP-depende	99.68
COG2256		436	MGS1 ATPase related to the helicase subunit of the	99.66
PRK00080		328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.66
PRK11034		758	clpA ATP-dependent Clp protease ATP-binding subuni	99.64
COG2255		332	RuvB Holliday junction resolvasome, helicase subun	99.62
PRK05342		412	clpX ATP-dependent protease ATP-binding subunit Cl	99.61
TIGR00763		775	lon ATP-dependent protease La. This protein is ind	99.6
COG2255		332	RuvB Holliday junction resolvasome, helicase subun	99.59
PRK10787		784	DNA-binding ATP-dependent protease La; Provisional	99.57
TIGR00382		413	clpX endopeptidase Clp ATP-binding regulatory subu	99.57
KOG2004		906	consensus Mitochondrial ATP-dependent protease PIM	99.57
PRK00080		328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.56
TIGR03345		852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.56
PRK10865		857	protein disaggregation chaperone; Provisional	99.56
TIGR02902		531	spore_lonB ATP-dependent protease LonB. Members of	99.55
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.55
TIGR00390		441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.55
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	99.55
COG0466		782	Lon ATP-dependent Lon protease, bacterial type [Po	99.54
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	99.53
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	99.53
PRK07940		394	DNA polymerase III subunit delta'; Validated	99.53
COG2256		436	MGS1 ATPase related to the helicase subunit of the	99.53
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	99.52
PRK13342		413	recombination factor protein RarA; Reviewed	99.52
PRK05201		443	hslU ATP-dependent protease ATP-binding subunit Hs	99.52
TIGR03346		852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.52
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	99.52
CHL00095		821	clpC Clp protease ATP binding subunit	99.52
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	99.52
PRK04195		482	replication factor C large subunit; Provisional	99.5
KOG2004		906	consensus Mitochondrial ATP-dependent protease PIM	99.5
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	99.49
PF05673		249	DUF815: Protein of unknown function (DUF815); Inte	99.48
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	99.48
PRK00149		450	dnaA chromosomal replication initiation protein; R	99.48
PRK00411		394	cdc6 cell division control protein 6; Reviewed	99.48
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	99.47
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	99.45
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	99.45
PRK05563		559	DNA polymerase III subunits gamma and tau; Validat	99.44
TIGR02903		615	spore_lon_C ATP-dependent protease, Lon family. Me	99.43
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	99.43
COG0466		782	Lon ATP-dependent Lon protease, bacterial type [Po	99.42
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	99.42
PF02359		87	CDC48_N: Cell division protein 48 (CDC48), N-termi	99.41
PRK12402		337	replication factor C small subunit 2; Reviewed	99.41
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	99.41
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	99.41
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	99.41
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	99.4
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	99.39
PRK14088		440	dnaA chromosomal replication initiation protein; P	99.38
PRK13341		725	recombination factor protein RarA/unknown domain f	99.38
PRK06893		229	DNA replication initiation factor; Validated	99.38
KOG2028		554	consensus ATPase related to the helicase subunit o	99.38
PRK14951		618	DNA polymerase III subunits gamma and tau; Provisi	99.38
TIGR02397		355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.37
COG0488		530	Uup ATPase components of ABC transporters with dup	99.37
PRK12422		445	chromosomal replication initiation protein; Provis	99.37
PTZ00112		1164	origin recognition complex 1 protein; Provisional	99.37
PRK07133		725	DNA polymerase III subunits gamma and tau; Validat	99.37
PRK04195		482	replication factor C large subunit; Provisional	99.36
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	99.36
TIGR02640		262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.36
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	99.35
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.35
PLN03025		319	replication factor C subunit; Provisional	99.35
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	99.35
PHA02544		316	44 clamp loader, small subunit; Provisional	99.35
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	99.35
PRK14970		367	DNA polymerase III subunits gamma and tau; Provisi	99.34
PRK14953		486	DNA polymerase III subunits gamma and tau; Provisi	99.34
PRK14086		617	dnaA chromosomal replication initiation protein; P	99.34
PRK07940		394	DNA polymerase III subunit delta'; Validated	99.34
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	99.33
PRK10787		784	DNA-binding ATP-dependent protease La; Provisional	99.33
PRK05896		605	DNA polymerase III subunits gamma and tau; Validat	99.33
PRK14965		576	DNA polymerase III subunits gamma and tau; Provisi	99.32
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	99.31
PRK13342		413	recombination factor protein RarA; Reviewed	99.3
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	99.3
PRK06305		451	DNA polymerase III subunits gamma and tau; Validat	99.3
PRK06647		563	DNA polymerase III subunits gamma and tau; Validat	99.28
PRK05342		412	clpX ATP-dependent protease ATP-binding subunit Cl	99.28
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	99.28
PF05673		249	DUF815: Protein of unknown function (DUF815); Inte	99.28
COG1474		366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.27
PRK08084		235	DNA replication initiation factor; Provisional	99.27
PRK08903		227	DnaA regulatory inactivator Hda; Validated	99.27
TIGR02902		531	spore_lonB ATP-dependent protease LonB. Members of	99.27
TIGR00390		441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.27
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	99.27
PRK14087		450	dnaA chromosomal replication initiation protein; P	99.27
PRK08727		233	hypothetical protein; Validated	99.27
COG1219		408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.26
KOG2028		554	consensus ATPase related to the helicase subunit o	99.26
PLN03025		319	replication factor C subunit; Provisional	99.26
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	99.26
TIGR01650		327	PD_CobS cobaltochelatase, CobS subunit. This model	99.25
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	99.25
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.25
PRK00440		319	rfc replication factor C small subunit; Reviewed	99.25
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	99.25
PHA02544		316	44 clamp loader, small subunit; Provisional	99.25
PRK00149		450	dnaA chromosomal replication initiation protein; R	99.25
PRK05201		443	hslU ATP-dependent protease ATP-binding subunit Hs	99.24
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	99.24
PRK05642		234	DNA replication initiation factor; Validated	99.23
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	99.23
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	99.23
PRK00411		394	cdc6 cell division control protein 6; Reviewed	99.23
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	99.22
PRK12402		337	replication factor C small subunit 2; Reviewed	99.22
COG2607		287	Predicted ATPase (AAA+ superfamily) [General funct	99.22
PRK06893		229	DNA replication initiation factor; Validated	99.22
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	99.21
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	99.21
PRK13407		334	bchI magnesium chelatase subunit I; Provisional	99.2
PRK06620		214	hypothetical protein; Validated	99.2
PRK14088		440	dnaA chromosomal replication initiation protein; P	99.2
PRK14954		620	DNA polymerase III subunits gamma and tau; Provisi	99.19
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	99.19
TIGR00382		413	clpX endopeptidase Clp ATP-binding regulatory subu	99.18
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	99.18
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	99.18
PRK08084		235	DNA replication initiation factor; Provisional	99.17
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	99.17
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	99.17
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	99.16
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	99.16
PTZ00112		1164	origin recognition complex 1 protein; Provisional	99.16
COG2812		515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.16
PRK14086		617	dnaA chromosomal replication initiation protein; P	99.16
PRK14971		614	DNA polymerase III subunits gamma and tau; Provisi	99.15
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	99.15
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.15
COG1224		450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.15
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	99.14
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.14
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	99.14
TIGR02640		262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.14
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	99.13
PRK12422		445	chromosomal replication initiation protein; Provis	99.13
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	99.11
smart00382		148	AAA ATPases associated with a variety of cellular	99.11
COG0714		329	MoxR-like ATPases [General function prediction onl	99.11
PRK05896		605	DNA polymerase III subunits gamma and tau; Validat	99.11
PRK08903		227	DnaA regulatory inactivator Hda; Validated	99.11
PRK13341		725	recombination factor protein RarA/unknown domain f	99.1
PHA02244		383	ATPase-like protein	99.1
KOG1969		877	consensus DNA replication checkpoint protein CHL12	99.1
CHL00081		350	chlI Mg-protoporyphyrin IX chelatase	99.1
PF07724		171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.09
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	99.09
TIGR02030		337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.09
PRK05563		559	DNA polymerase III subunits gamma and tau; Validat	99.09
PF07728		139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.09
PRK14970		367	DNA polymerase III subunits gamma and tau; Provisi	99.09
PRK14951		618	DNA polymerase III subunits gamma and tau; Provisi	99.09
TIGR02397		355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.09
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	99.08
PRK07133		725	DNA polymerase III subunits gamma and tau; Validat	99.08
PRK11331		459	5-methylcytosine-specific restriction enzyme subun	99.08
COG1123		539	ATPase components of various ABC-type transport sy	99.07
PRK08727		233	hypothetical protein; Validated	99.07
COG5271		4600	MDN1 AAA ATPase containing von Willebrand factor t	99.07
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.07
PRK00440		319	rfc replication factor C small subunit; Reviewed	99.06
PRK05564		313	DNA polymerase III subunit delta'; Validated	99.06
TIGR02903		615	spore_lon_C ATP-dependent protease, Lon family. Me	99.05
PRK09087		226	hypothetical protein; Validated	99.05
PRK14953		486	DNA polymerase III subunits gamma and tau; Provisi	99.05
COG0593		408	DnaA ATPase involved in DNA replication initiation	99.04
PRK09112		351	DNA polymerase III subunit delta'; Validated	99.04
PRK06305		451	DNA polymerase III subunits gamma and tau; Validat	99.04
PRK05642		234	DNA replication initiation factor; Validated	99.04
PRK06647		563	DNA polymerase III subunits gamma and tau; Validat	99.04
COG0542		786	clpA ATP-binding subunits of Clp protease and DnaK	99.03
KOG0745		564	consensus Putative ATP-dependent Clp-type protease	99.02
TIGR00764		608	lon_rel lon-related putative ATP-dependent proteas	99.02
TIGR01650		327	PD_CobS cobaltochelatase, CobS subunit. This model	99.02
PRK14965		576	DNA polymerase III subunits gamma and tau; Provisi	99.02
PRK14087		450	dnaA chromosomal replication initiation protein; P	99.01
TIGR02442		633	Cob-chelat-sub cobaltochelatase subunit. A number	99.0
PHA02244		383	ATPase-like protein	99.0
smart00382		148	AAA ATPases associated with a variety of cellular	98.99
KOG0927		614	consensus Predicted transporter (ABC superfamily)	98.99
COG1474		366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.97
COG5271		4600	MDN1 AAA ATPase containing von Willebrand factor t	98.97
PRK14954		620	DNA polymerase III subunits gamma and tau; Provisi	98.96
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	98.96
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	98.96
PRK06620		214	hypothetical protein; Validated	98.96
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	98.96
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	98.96
PRK07471		365	DNA polymerase III subunit delta'; Validated	98.95
PRK10636		638	putative ABC transporter ATP-binding protein; Prov	98.93
PRK04132		846	replication factor C small subunit; Provisional	98.93
PRK05707		328	DNA polymerase III subunit delta'; Validated	98.92
PRK13549		506	xylose transporter ATP-binding subunit; Provisiona	98.91
PF07728		139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.9
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	98.9
PRK07399		314	DNA polymerase III subunit delta'; Validated	98.9
PRK09700		510	D-allose transporter ATP-binding protein; Provisio	98.88
PRK13407		334	bchI magnesium chelatase subunit I; Provisional	98.88
COG1220		444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	98.87
PRK10938		490	putative molybdenum transport ATP-binding protein	98.87
PRK11147		635	ABC transporter ATPase component; Reviewed	98.87
PRK15439		510	autoinducer 2 ABC transporter ATP-binding protein	98.87
PRK09087		226	hypothetical protein; Validated	98.86
PRK10982		491	galactose/methyl galaxtoside transporter ATP-bindi	98.86
KOG1969		877	consensus DNA replication checkpoint protein CHL12	98.85
COG0714		329	MoxR-like ATPases [General function prediction onl	98.85
PF01078		206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	98.85
PRK10762		501	D-ribose transporter ATP binding protein; Provisio	98.85
COG0470		325	HolB ATPase involved in DNA replication [DNA repli	98.84
TIGR00368		499	Mg chelatase-related protein. The N-terminal end m	98.82
TIGR03269		520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.82
PRK11331		459	5-methylcytosine-specific restriction enzyme subun	98.82
COG0593		408	DnaA ATPase involved in DNA replication initiation	98.82
PRK13531		498	regulatory ATPase RavA; Provisional	98.81
PF06068		398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	98.81
TIGR02655		484	circ_KaiC circadian clock protein KaiC. Members of	98.81
COG2607		287	Predicted ATPase (AAA+ superfamily) [General funct	98.81
PRK08058		329	DNA polymerase III subunit delta'; Validated	98.8
PRK15064		530	ABC transporter ATP-binding protein; Provisional	98.79
PRK09112		351	DNA polymerase III subunit delta'; Validated	98.79
smart00350		509	MCM minichromosome maintenance proteins.	98.79
PF07724		171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	98.79
PRK15134		529	microcin C ABC transporter ATP-binding protein Yej	98.78
TIGR02633		500	xylG D-xylose ABC transporter, ATP-binding protein	98.78
PF07726		131	AAA_3: ATPase family associated with various cellu	98.78
smart00763		361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.77
PRK14971		614	DNA polymerase III subunits gamma and tau; Provisi	98.76
PLN03073		718	ABC transporter F family; Provisional	98.76
CHL00081		350	chlI Mg-protoporyphyrin IX chelatase	98.76
KOG0066		807	consensus eIF2-interacting protein ABC50 (ABC supe	98.76
COG2812		515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	98.75
PRK11288		501	araG L-arabinose transporter ATP-binding protein;	98.75
TIGR02030		337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	98.75
PRK06964		342	DNA polymerase III subunit delta'; Validated	98.75
TIGR02031		589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.74
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	98.74
PRK13409		590	putative ATPase RIL; Provisional	98.73
TIGR00602		637	rad24 checkpoint protein rad24. This family is bas	98.72
COG4172		534	ABC-type uncharacterized transport system, duplica	98.71
PRK11819		556	putative ABC transporter ATP-binding protein; Revi	98.69
COG1224		450	TIP49 DNA helicase TIP49, TBP-interacting protein	98.69
COG1219		408	ClpX ATP-dependent protease Clp, ATPase subunit [P	98.69
PRK05564		313	DNA polymerase III subunit delta'; Validated	98.68
COG1116		248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.68
PRK08116		268	hypothetical protein; Validated	98.67
PRK07471		365	DNA polymerase III subunit delta'; Validated	98.67
TIGR00602		637	rad24 checkpoint protein rad24. This family is bas	98.66
KOG0062		582	consensus ATPase component of ABC transporters wit	98.65
PRK10261		623	glutathione transporter ATP-binding protein; Provi	98.65
PRK09862		506	putative ATP-dependent protease; Provisional	98.65
TIGR03719		552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.64
KOG1942		456	consensus DNA helicase, TBP-interacting protein [R	98.63
PF01078		206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	98.62
PRK11608		326	pspF phage shock protein operon transcriptional ac	98.6
PRK13531		498	regulatory ATPase RavA; Provisional	98.6
KOG1514		767	consensus Origin recognition complex, subunit 1, a	98.6
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.59
TIGR02974		329	phageshock_pspF psp operon transcriptional activat	98.59
COG1120		258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.58
PF07726		131	AAA_3: ATPase family associated with various cellu	98.58
PRK09302		509	circadian clock protein KaiC; Reviewed	98.58
COG0470		325	HolB ATPase involved in DNA replication [DNA repli	98.58
PRK06871		325	DNA polymerase III subunit delta'; Validated	98.57
COG1220		444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	98.56
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	98.55
KOG0991		333	consensus Replication factor C, subunit RFC2 [Repl	98.55
PRK05707		328	DNA polymerase III subunit delta'; Validated	98.55
PRK07993		334	DNA polymerase III subunit delta'; Validated	98.54
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.54
TIGR01817		534	nifA Nif-specific regulatory protein. This model r	98.54
PRK15424		538	propionate catabolism operon regulatory protein Pr	98.53
KOG0991		333	consensus Replication factor C, subunit RFC2 [Repl	98.52
COG1125		309	OpuBA ABC-type proline/glycine betaine transport s	98.52
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.52
COG1121		254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.52
PRK11388		638	DNA-binding transcriptional regulator DhaR; Provis	98.51
TIGR02442		633	Cob-chelat-sub cobaltochelatase subunit. A number	98.51
PRK04132		846	replication factor C small subunit; Provisional	98.5
PRK07399		314	DNA polymerase III subunit delta'; Validated	98.49
PRK08769		319	DNA polymerase III subunit delta'; Validated	98.48
PRK08116		268	hypothetical protein; Validated	98.48
COG1221		403	PspF Transcriptional regulators containing an AAA-	98.48
cd03216		163	ABC_Carb_Monos_I This family represents the domain	98.47
KOG0745		564	consensus Putative ATP-dependent Clp-type protease	98.46
COG1126		240	GlnQ ABC-type polar amino acid transport system, A	98.45
PRK08058		329	DNA polymerase III subunit delta'; Validated	98.44
PRK15429		686	formate hydrogenlyase transcriptional activator Fh	98.43
PRK08181		269	transposase; Validated	98.42
PRK09183		259	transposase/IS protein; Provisional	98.42
PRK05022		509	anaerobic nitric oxide reductase transcription reg	98.41
COG1118		345	CysA ABC-type sulfate/molybdate transport systems,	98.41
COG3842		352	PotA ABC-type spermidine/putrescine transport syst	98.41
TIGR02329		526	propionate_PrpR propionate catabolism operon regul	98.4
COG4619		223	ABC-type uncharacterized transport system, ATPase	98.4
COG1136		226	SalX ABC-type antimicrobial peptide transport syst	98.39
PRK08699		325	DNA polymerase III subunit delta'; Validated	98.39
cd03222		177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.38
PF13173		128	AAA_14: AAA domain	98.38
PRK06090		319	DNA polymerase III subunit delta'; Validated	98.37
cd03214		180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.37
PRK09183		259	transposase/IS protein; Provisional	98.37
PF13173		128	AAA_14: AAA domain	98.37
PRK08181		269	transposase; Validated	98.37
TIGR00368		499	Mg chelatase-related protein. The N-terminal end m	98.36
KOG2680		454	consensus DNA helicase TIP49, TBP-interacting prot	98.34
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.34
COG1239		423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.34
COG0606		490	Predicted ATPase with chaperone activity [Posttran	98.34
PRK06526		254	transposase; Provisional	98.33
PRK07952		244	DNA replication protein DnaC; Validated	98.33
PRK06526		254	transposase; Provisional	98.33
PTZ00111		915	DNA replication licensing factor MCM4; Provisional	98.33
PF00158		168	Sigma54_activat: Sigma-54 interaction domain; Inte	98.32
COG3839		338	MalK ABC-type sugar transport systems, ATPase comp	98.32
PRK08939		306	primosomal protein DnaI; Reviewed	98.3
cd03228		171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.3
PF01637		234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.3
PF03215		519	Rad17: Rad17 cell cycle checkpoint protein	98.29
COG1124		252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.28
COG1122		235	CbiO ABC-type cobalt transport system, ATPase comp	98.28
KOG2227		529	consensus Pre-initiation complex, subunit CDC6, AA	98.27
PF01637		234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.27
PRK12377		248	putative replication protein; Provisional	98.26
cd03221		144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.26
PRK06921		266	hypothetical protein; Provisional	98.26
PRK10820		520	DNA-binding transcriptional regulator TyrR; Provis	98.26
COG2884		223	FtsE Predicted ATPase involved in cell division [C	98.25
cd03246		173	ABCC_Protease_Secretion This family represents the	98.25
smart00350		509	MCM minichromosome maintenance proteins.	98.25
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.25
PRK13765		637	ATP-dependent protease Lon; Provisional	98.25
COG1221		403	PspF Transcriptional regulators containing an AAA-	98.24
cd03247		178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.24
PRK06835		329	DNA replication protein DnaC; Validated	98.24
PRK12377		248	putative replication protein; Provisional	98.24
PF01695		178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.23
COG1484		254	DnaC DNA replication protein [DNA replication, rec	98.23
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	98.23
PF00158		168	Sigma54_activat: Sigma-54 interaction domain; Inte	98.22
COG4608		268	AppF ABC-type oligopeptide transport system, ATPas	98.22
COG3829		560	RocR Transcriptional regulator containing PAS, AAA	98.22
TIGR02031		589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.22
cd00267		157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.21
COG1484		254	DnaC DNA replication protein [DNA replication, rec	98.21
cd03238		176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.2
PRK06964		342	DNA polymerase III subunit delta'; Validated	98.19
PRK05022		509	anaerobic nitric oxide reductase transcription reg	98.19
PRK07952		244	DNA replication protein DnaC; Validated	98.18
PF01695		178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.18
cd03230		173	ABC_DR_subfamily_A This family of ATP-binding prot	98.18
cd03229		178	ABC_Class3 This class is comprised of all BPD (Bin	98.18
PRK06871		325	DNA polymerase III subunit delta'; Validated	98.18
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	98.17
PRK06851		367	hypothetical protein; Provisional	98.17
COG1117		253	PstB ABC-type phosphate transport system, ATPase c	98.17
COG1119		257	ModF ABC-type molybdenum transport system, ATPase	98.16
PRK15429		686	formate hydrogenlyase transcriptional activator Fh	98.16
COG1131		293	CcmA ABC-type multidrug transport system, ATPase c	98.16
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	98.16
COG1239		423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.15
COG1245		591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.14
KOG0990		360	consensus Replication factor C, subunit RFC5 [Repl	98.13
TIGR02974		329	phageshock_pspF psp operon transcriptional activat	98.12
TIGR02237		209	recomb_radB DNA repair and recombination protein R	98.12
PRK09862		506	putative ATP-dependent protease; Provisional	98.12
PF05729		166	NACHT: NACHT domain	98.12
PRK11608		326	pspF phage shock protein operon transcriptional ac	98.11
PRK08939		306	primosomal protein DnaI; Reviewed	98.11
cd03223		166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.11
PRK15424		538	propionate catabolism operon regulatory protein Pr	98.1
PRK08699		325	DNA polymerase III subunit delta'; Validated	98.1
COG1127		263	Ttg2A ABC-type transport system involved in resist	98.09
PRK06835		329	DNA replication protein DnaC; Validated	98.09
cd03213		194	ABCG_EPDR ABCG transporters are involved in eye pi	98.09
PRK13539		207	cytochrome c biogenesis protein CcmA; Provisional	98.08
smart00763		361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.08
COG3829		560	RocR Transcriptional regulator containing PAS, AAA	98.07
cd03255		218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.07
PF03215		519	Rad17: Rad17 cell cycle checkpoint protein	98.06
PRK06921		266	hypothetical protein; Provisional	98.06
COG4525		259	TauB ABC-type taurine transport system, ATPase com	98.06
COG1126		240	GlnQ ABC-type polar amino acid transport system, A	98.06
COG3638		258	ABC-type phosphate/phosphonate transport system, A	98.06
COG0606		490	Predicted ATPase with chaperone activity [Posttran	98.06
cd03283		199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.06
PRK11650		356	ugpC glycerol-3-phosphate transporter ATP-binding	98.06
PRK08769		319	DNA polymerase III subunit delta'; Validated	98.05
PF00910		107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.05
COG1129		500	MglA ABC-type sugar transport system, ATPase compo	98.04
COG2204		464	AtoC Response regulator containing CheY-like recei	98.04
cd03259		213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.04
cd03301		213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.03
PRK07993		334	DNA polymerase III subunit delta'; Validated	98.03
COG3604		550	FhlA Transcriptional regulator containing GAF, AAA	98.03
PRK11432		351	fbpC ferric transporter ATP-binding subunit; Provi	98.02
TIGR03864		236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.02
cd03269		210	ABC_putative_ATPase This subfamily is involved in	98.02
PRK05917		290	DNA polymerase III subunit delta'; Validated	98.02

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=3e-122  Score=999.92  Aligned_cols=681  Identities=61%  Similarity=1.004  Sum_probs=632.9

Q ss_pred             CCcchHHhhcCCCCCeEEEecccCCCCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCCCCCeEEEcHhHH
Q 004267           15 KDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVR   94 (764)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r   94 (764)
                      .+.+++|+..+..++.+.|.. .+++...+.+++..|+.+++..|  |.+.|+.+...++.+...+. ....+.++...|
T Consensus         2 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r   77 (693)
T KOG0730|consen    2 ESPSTAILPVKCPQNNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSR   77 (693)
T ss_pred             CcccccccccccCCCCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheec
Confidence            578899999999999999988 44455589999999999999999  99999987766654433334 778899999999


Q ss_pred             hhcCcCCCCeEEEEecCCCCCCcEEEeccccCcccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEEEEEEec
Q 004267           95 SNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD  174 (764)
Q Consensus        95 ~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~  174 (764)
                      .++.++.|+.|.+++++.+..+.++.+.|+..+..++....++.+.+.|+....+++..|+++   ..+..+.|++++..
T Consensus        78 ~~l~~~~~~~~~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  154 (693)
T KOG0730|consen   78 SNLRLQLGRLLHSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELD  154 (693)
T ss_pred             cchhhcccceecccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccc
Confidence            999999999999998778888888999999988888888888889999999889999999988   33445678888887


Q ss_pred             CCceEeeCCCceEEecCCCCcccccccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCC
Q 004267          175 PGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSG  254 (764)
Q Consensus       175 p~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtG  254 (764)
                      |..  +++++|.+.+.+++....... ...++ +++||+..++..+++++.+|+++|..+.++|+.+|+++|+|||||||
T Consensus       155 ~~~--~v~~~t~~~~~~~~~~~~~~~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~G  230 (693)
T KOG0730|consen  155 PSP--QVTPDTELSYLGEPAKREEEE-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTG  230 (693)
T ss_pred             cch--hcCccchhhhcCCCccccccc-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCC
Confidence            766  788999998888887665444 46778 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcC-CeEEEEccccccCCCCCCCchHHHHHHHHHHH
Q 004267          255 KTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLL  333 (764)
Q Consensus       255 KTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll  333 (764)
                      ||.+++++|++.++.++.++++++++++.|++++.+|.+|+++...+ |+++||||+|.++|++....+ +++|++.||+
T Consensus       231 kt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqll  309 (693)
T KOG0730|consen  231 KTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLL  309 (693)
T ss_pred             hHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 999999999999999987666 8999999999


Q ss_pred             HHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchH
Q 004267          334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA  413 (764)
Q Consensus       334 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~  413 (764)
                      ++|+++....+++||++||+|+.||+++|| |||+++++++.|+..+|.+|++.+++++++.+++++..+|..||||+|+
T Consensus       310 tL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGa  388 (693)
T KOG0730|consen  310 TLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGA  388 (693)
T ss_pred             HHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHH
Confidence            999999999999999999999999999999 9999999999999999999999999999999889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcceeeeeccCccccccccchhhhhcc
Q 004267          414 DLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKREL  493 (764)
Q Consensus       414 dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l  493 (764)
                      |+.++|++|++.+.++                      ++++|..|+..++|+++|+..++.|+++|+||||++++|+.|
T Consensus       389 DL~~l~~ea~~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el  446 (693)
T KOG0730|consen  389 DLAALCREASLQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL  446 (693)
T ss_pred             HHHHHHHHHHHHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence            9999999999988765                      456788899999999999999999999999999999999999


Q ss_pred             cceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhhC
Q 004267          494 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS  573 (764)
Q Consensus       494 ~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~  573 (764)
                      ++.|.||+++++.|.++|+++++|||||||||||||++||++|++++.+|++|+|+++++||+|+||+.||++|++||+.
T Consensus       447 q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~  526 (693)
T KOG0730|consen  447 QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQV  526 (693)
T ss_pred             HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCC
Q 004267          574 APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD  653 (764)
Q Consensus       574 ~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~  653 (764)
                      +||||||||||+++..|+++.   +++.+|++++||+||||++..++|+||||||||+.||+|++||||||++||||+||
T Consensus       527 aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD  603 (693)
T KOG0730|consen  527 APCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD  603 (693)
T ss_pred             CCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence            999999999999999998443   37899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccccccccccc
Q 004267          654 EDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEV  733 (764)
Q Consensus       654 ~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  733 (764)
                      .+.|.+||+.+++++++.+++|+++||+.|+|||||||.++|++|++.|+++.++                        .
T Consensus       604 ~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~------------------------a  659 (693)
T KOG0730|consen  604 LEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE------------------------A  659 (693)
T ss_pred             HHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc------------------------c
Confidence            9999999999999999999999999999999999999999999999999999875                        3


Q ss_pred             ccccHHHHHHHHHhcCCCCCCcccc
Q 004267          734 SEIKAAHFEESMKFARRSICSDAAA  758 (764)
Q Consensus       734 ~~i~~~~f~~a~~~~~~s~~~~~~~  758 (764)
                      ..|+.+||++|++.++||+ +..+.
T Consensus       660 ~~i~~~hf~~al~~~r~s~-~~~~~  683 (693)
T KOG0730|consen  660 TEITWQHFEEALKAVRPSL-TSELL  683 (693)
T ss_pred             ccccHHHHHHHHHhhcccC-CHHHH
Confidence            4799999999999999999 55443

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily	Back alignment and domain information

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>CHL00195 ycf46 Ycf46; Provisional	Back alignment and domain information

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional	Back alignment and domain information

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]	Back alignment and domain information

>PRK03992 proteasome-activating nucleotidase; Provisional	Back alignment and domain information

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional	Back alignment and domain information

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]	Back alignment and domain information

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH	Back alignment and domain information

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03689 pup_AAA proteasome ATPase	Back alignment and domain information

>TIGR01242 26Sp45 26S proteasome subunit P45 family	Back alignment and domain information

>CHL00176 ftsH cell division protein; Validated	Back alignment and domain information

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional	Back alignment and domain information

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed	Back alignment and domain information

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>CHL00206 ycf2 Ycf2; Provisional	Back alignment and domain information

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily	Back alignment and domain information

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK03992 proteasome-activating nucleotidase; Provisional	Back alignment and domain information

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional	Back alignment and domain information

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional	Back alignment and domain information

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA	Back alignment and domain information

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional	Back alignment and domain information

>CHL00195 ycf46 Ycf46; Provisional	Back alignment and domain information

>TIGR01242 26Sp45 26S proteasome subunit P45 family	Back alignment and domain information

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH	Back alignment and domain information

>TIGR03689 pup_AAA proteasome ATPase	Back alignment and domain information

>CHL00176 ftsH cell division protein; Validated	Back alignment and domain information

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional	Back alignment and domain information

>CHL00095 clpC Clp protease ATP binding subunit	Back alignment and domain information

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed	Back alignment and domain information

>CHL00206 ycf2 Ycf2; Provisional	Back alignment and domain information

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>TIGR00763 lon ATP-dependent protease La	Back alignment and domain information

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair	Back alignment and domain information

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA	Back alignment and domain information

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional	Back alignment and domain information

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional	Back alignment and domain information

>TIGR00763 lon ATP-dependent protease La	Back alignment and domain information

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK10787 DNA-binding ATP-dependent protease La; Provisional	Back alignment and domain information

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)	Back alignment and domain information

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

>TIGR02902 spore_lonB ATP-dependent protease LonB	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PRK13342 recombination factor protein RarA; Reviewed	Back alignment and domain information

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional	Back alignment and domain information

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>CHL00095 clpC Clp protease ATP binding subunit	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK05563 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]	Back alignment and domain information

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau	Back alignment and domain information

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	Back alignment and domain information

>PRK12422 chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>PRK07133 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14086 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK10787 DNA-binding ATP-dependent protease La; Provisional	Back alignment and domain information

>PRK05896 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK13342 recombination factor protein RarA; Reviewed	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>PRK06305 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK06647 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function	Back alignment and domain information

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>TIGR02902 spore_lonB ATP-dependent protease LonB	Back alignment and domain information

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK13407 bchI magnesium chelatase subunit I; Provisional	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK14086 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK12422 chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>COG0714 MoxR-like ATPases [General function prediction only]	Back alignment and domain information

>PRK05896 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed	Back alignment and domain information

>PHA02244 ATPase-like protein	Back alignment and domain information

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>CHL00081 chlI Mg-protoporyphyrin IX chelatase	Back alignment and domain information

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I	Back alignment and domain information

>PRK05563 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07133 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional	Back alignment and domain information

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>PRK05564 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK06305 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

>PRK06647 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00764 lon_rel lon-related putative ATP-dependent protease	Back alignment and domain information

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit	Back alignment and domain information

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit	Back alignment and domain information

>PHA02244 ATPase-like protein	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]	Back alignment and domain information

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK10636 putative ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK04132 replication factor C small subunit; Provisional	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK13549 xylose transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07399 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK09700 D-allose transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13407 bchI magnesium chelatase subunit I; Provisional	Back alignment and domain information

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional	Back alignment and domain information

>PRK11147 ABC transporter ATPase component; Reviewed	Back alignment and domain information

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional	Back alignment and domain information

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>COG0714 MoxR-like ATPases [General function prediction only]	Back alignment and domain information

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX	Back alignment and domain information

>PRK10762 D-ribose transporter ATP binding protein; Provisional	Back alignment and domain information

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00368 Mg chelatase-related protein	Back alignment and domain information

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2	Back alignment and domain information

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional	Back alignment and domain information

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK13531 regulatory ATPase RavA; Provisional	Back alignment and domain information

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins	Back alignment and domain information

>TIGR02655 circ_KaiC circadian clock protein KaiC	Back alignment and domain information

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]	Back alignment and domain information

>PRK08058 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK15064 ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>smart00350 MCM minichromosome maintenance proteins	Back alignment and domain information

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional	Back alignment and domain information

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein	Back alignment and domain information

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model	Back alignment and domain information

>smart00763 AAA_PrkA PrkA AAA domain	Back alignment and domain information

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PLN03073 ABC transporter F family; Provisional	Back alignment and domain information

>CHL00081 chlI Mg-protoporyphyrin IX chelatase	Back alignment and domain information

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I	Back alignment and domain information

>PRK06964 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PRK13409 putative ATPase RIL; Provisional	Back alignment and domain information

>TIGR00602 rad24 checkpoint protein rad24	Back alignment and domain information

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	Back alignment and domain information

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed	Back alignment and domain information

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]	Back alignment and domain information

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK05564 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR00602 rad24 checkpoint protein rad24	Back alignment and domain information

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK10261 glutathione transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK09862 putative ATP-dependent protease; Provisional	Back alignment and domain information

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family	Back alignment and domain information

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]	Back alignment and domain information

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX	Back alignment and domain information

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional	Back alignment and domain information

>PRK13531 regulatory ATPase RavA; Provisional	Back alignment and domain information

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF	Back alignment and domain information

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model	Back alignment and domain information

>PRK09302 circadian clock protein KaiC; Reviewed	Back alignment and domain information

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK06871 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK07993 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>TIGR01817 nifA Nif-specific regulatory protein	Back alignment and domain information

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional	Back alignment and domain information

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]	Back alignment and domain information

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional	Back alignment and domain information

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit	Back alignment and domain information

>PRK04132 replication factor C small subunit; Provisional	Back alignment and domain information

>PRK07399 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>PRK08058 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>PRK09183 transposase/IS protein; Provisional	Back alignment and domain information

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional	Back alignment and domain information

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR	Back alignment and domain information

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>PRK08699 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>PRK06090 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea	Back alignment and domain information

>PRK09183 transposase/IS protein; Provisional	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>TIGR00368 Mg chelatase-related protein	Back alignment and domain information

>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]	Back alignment and domain information

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PTZ00111 DNA replication licensing factor MCM4; Provisional	Back alignment and domain information

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor	Back alignment and domain information

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK08939 primosomal protein DnaI; Reviewed	Back alignment and domain information

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export	Back alignment and domain information

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP	Back alignment and domain information

>PF03215 Rad17: Rad17 cell cycle checkpoint protein	Back alignment and domain information

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth	Back alignment and domain information

>PRK06921 hypothetical protein; Provisional	Back alignment and domain information

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional	Back alignment and domain information

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	Back alignment and domain information

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain	Back alignment and domain information

>smart00350 MCM minichromosome maintenance proteins	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>PRK13765 ATP-dependent protease Lon; Provisional	Back alignment and domain information

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif	Back alignment and domain information

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor	Back alignment and domain information

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D	Back alignment and domain information

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>PRK06964 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif	Back alignment and domain information

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity	Back alignment and domain information

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment	Back alignment and domain information

>PRK06871 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>PRK06851 hypothetical protein; Provisional	Back alignment and domain information

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional	Back alignment and domain information

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]	Back alignment and domain information

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]	Back alignment and domain information

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]	Back alignment and domain information

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF	Back alignment and domain information

>TIGR02237 recomb_radB DNA repair and recombination protein RadB	Back alignment and domain information

>PRK09862 putative ATP-dependent protease; Provisional	Back alignment and domain information

>PF05729 NACHT: NACHT domain	Back alignment and domain information

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional	Back alignment and domain information

>PRK08939 primosomal protein DnaI; Reviewed	Back alignment and domain information

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome	Back alignment and domain information

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional	Back alignment and domain information

>PRK08699 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)	Back alignment and domain information

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>smart00763 AAA_PrkA PrkA AAA domain	Back alignment and domain information

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)	Back alignment and domain information

>PF03215 Rad17: Rad17 cell cycle checkpoint protein	Back alignment and domain information

>PRK06921 hypothetical protein; Provisional	Back alignment and domain information

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes	Back alignment and domain information

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)	Back alignment and domain information

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup	Back alignment and domain information

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK	Back alignment and domain information

>PRK07993 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system	Back alignment and domain information

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity	Back alignment and domain information

>PRK05917 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

Homologous Structure Templates